Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007679
(1128 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013016.1| F-actin-capping protein subunit alpha-2 [Bos... 528 e-150
Alignment gi|NP_001076949.1| F-actin-capping protein subunit alpha-1 [Bos... 470 e-132
Alignment gi|NP_001035651.1| F-actin-capping protein subunit alpha-3 [Bos... 189 4e-48
>ref|NP_001013016.1| F-actin-capping protein subunit alpha-2 [Bos taurus].
Length = 286
Score = 528 bits (1359), Expect = e-150
Identities = 260/281 (92%), Positives = 263/281 (93%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVF EGAAHAFAQYNLD
Sbjct: 1 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNLD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRI FKFDHLRKEATDPRPYEAENA+ESW
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRISFKFDHLRKEATDPRPYEAENAIESW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT
Sbjct: 121 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ
Sbjct: 181 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 240
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 241 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 281
>ref|NP_001076949.1| F-actin-capping protein subunit alpha-1 [Bos taurus].
Length = 286
Score = 470 bits (1209), Expect = e-132
Identities = 224/281 (79%), Positives = 246/281 (87%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MAD E+++SDEEKVRIAAKFI HAPPGEFNEVF EGAAHAFAQYN+D
Sbjct: 1 MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGN +FLDP+N+I FKFDHLRKEA+DP+P EA+ ++SW
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEEADGGLKSW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
R S ++ALRAYVK+HY NG CTVY K IDGQQTIIACIESHQFQ KNFWNGRWRSEWKFT
Sbjct: 121 RESCDSALRAYVKDHYSNGFCTVYAKTIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITP T QVVG+LKIQVHYYEDGNVQLVSHKD+QDS+TVSNE QTAKEFIKI+E AENEYQ
Sbjct: 181 ITPPTAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEAQTAKEFIKIIEHAENEYQ 240
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTTFKALRRQLPVTRTK+DW +IL +IGK
Sbjct: 241 TAISENYQTMSDTTFKALRRQLPVTRTKVDWNKILSYKIGK 281
>ref|NP_001035651.1| F-actin-capping protein subunit alpha-3 [Bos taurus].
Length = 299
Score = 189 bits (480), Expect = 4e-48
Identities = 100/270 (37%), Positives = 153/270 (56%), Gaps = 2/270 (0%)
Frame = +1
Query: 235 LSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLDQFTPVKI 414
LS +EK ++ + +I APPGEF F A Q+ P+ I
Sbjct: 6 LSRKEKEKVIRRLLIQAPPGEFVNAFDDLCLLIRDEKLMHHQGECAGHQHCQKYSVPLSI 65
Query: 415 EGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEA-ENAVESWRTSVET 591
+G + VL++ H +G+ +F D ++++ FKFD L+ + D + + N E RT V
Sbjct: 66 DG--NAVLLSHHNVVGDYRFFDYQSKLSFKFDLLQNQLKDIQSHGIIRNETEYLRTVVLC 123
Query: 592 ALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFTITPSTT 771
AL+ YV +HYP G C V K + ++ +IACIE H ++ ++WNG W+S+W F + P T
Sbjct: 124 ALKLYVNDHYPKGNCNVLRKTVKNKEFLIACIEDHSYETADYWNGLWKSKWIFQVNPFLT 183
Query: 772 QVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQTAISEN 951
QV G + +Q HY+ N+ + KD+++SL V N+ Q A F ++VE EN++Q A+ E
Sbjct: 184 QVTGRIFVQAHYFRCVNLHIEISKDLKESLEVVNQAQLALSFARLVEEQENKFQAALLEE 243
Query: 952 YQTMSDTTF-KALRRQLPVTRTKIDWKQIL 1038
Q +S+ K LRR LPVTRT IDW++IL
Sbjct: 244 LQELSNEALRKILRRDLPVTRTHIDWQRIL 273
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,497,275
Number of extensions: 748342
Number of successful extensions: 1749
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1746
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007679
(1128 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013013.1| F-actin-capping protein subunit alpha-2 [Can... 532 e-151
Alignment gi|XP_533066.2| PREDICTED: similar to capping protein (actin fi... 469 e-132
Alignment gi|XP_862832.1| PREDICTED: similar to capping protein (actin fi... 464 e-131
Alignment gi|XP_862807.1| PREDICTED: similar to capping protein (actin fi... 450 e-126
Alignment gi|XP_862856.1| PREDICTED: similar to capping protein (actin fi... 419 e-117
Alignment gi|XP_855099.1| PREDICTED: similar to capping protein (actin fi... 393 e-109
Alignment gi|XP_534875.1| PREDICTED: similar to F-actin capping protein a... 184 1e-46
Alignment gi|XP_862781.1| PREDICTED: similar to capping protein (actin fi... 64 3e-10
>ref|NP_001013013.1| F-actin-capping protein subunit alpha-2 [Canis lupus familiaris].
Length = 286
Score = 532 bits (1370), Expect = e-151
Identities = 262/281 (93%), Positives = 264/281 (93%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVF EGAAHAFAQYNLD
Sbjct: 1 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNLD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT
Sbjct: 121 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ
Sbjct: 181 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 240
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 241 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 281
>ref|XP_533066.2| PREDICTED: similar to capping protein (actin filament) muscle Z-line,
alpha 1 isoform 2 [Canis familiaris].
Length = 286
Score = 469 bits (1206), Expect = e-132
Identities = 224/281 (79%), Positives = 245/281 (87%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MAD E+++SDEEKVRIAAKFI HAPPGEFNEVF EGAAHAFAQYN+D
Sbjct: 1 MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGN +FLDP+N+I FKFDHLRKEA+DP+P + + ++SW
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEDVDGGLKSW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
R S + ALRAYVK+HY NG CTVY K IDGQQTIIACIESHQFQ KNFWNGRWRSEWKFT
Sbjct: 121 RESCDNALRAYVKDHYSNGFCTVYAKAIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITP T QVVG+LKIQVHYYEDGNVQLVSHKD+QDS+TVSNEVQTAKEFIKI+E AENEYQ
Sbjct: 181 ITPPTAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEVQTAKEFIKIIEHAENEYQ 240
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 241 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 281
>ref|XP_862832.1| PREDICTED: similar to capping protein (actin filament) muscle Z-line,
alpha 1 isoform 5 [Canis familiaris].
Length = 287
Score = 464 bits (1194), Expect = e-131
Identities = 224/282 (79%), Positives = 245/282 (86%), Gaps = 1/282 (0%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MAD E+++SDEEKVRIAAKFI HAPPGEFNEVF EGAAHAFAQYN+D
Sbjct: 1 MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGN +FLDP+N+I FKFDHLRKEA+DP+P + + ++SW
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEDVDGGLKSW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
R S + ALRAYVK+HY NG CTVY K IDGQQTIIACIESHQFQ KNFWNGRWRSEWKFT
Sbjct: 121 RESCDNALRAYVKDHYSNGFCTVYAKAIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKI-QVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEY 930
ITP T QVVG+LKI QVHYYEDGNVQLVSHKD+QDS+TVSNEVQTAKEFIKI+E AENEY
Sbjct: 181 ITPPTAQVVGVLKIQQVHYYEDGNVQLVSHKDVQDSVTVSNEVQTAKEFIKIIEHAENEY 240
Query: 931 QTAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
QTAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 241 QTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 282
>ref|XP_862807.1| PREDICTED: similar to capping protein (actin filament) muscle Z-line,
alpha 1 isoform 4 [Canis familiaris].
Length = 279
Score = 450 bits (1157), Expect = e-126
Identities = 218/281 (77%), Positives = 238/281 (84%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MAD E+++SDEEKVRIAAKFI HAPPGEFNEVF EGAAHAFAQYN+D
Sbjct: 1 MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGN +FLDP+N+I FKFDHLRKEA+DP+P + + ++SW
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEDVDGGLKSW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
R S + ALRAYVK+HY NG CTVY K IDGQQTIIACIESHQFQ KNFWNGRWRSEWKFT
Sbjct: 121 RESCDNALRAYVKDHYSNGFCTVYAKAIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITP T QV VHYYEDGNVQLVSHKD+QDS+TVSNEVQTAKEFIKI+E AENEYQ
Sbjct: 181 ITPPTAQV-------VHYYEDGNVQLVSHKDVQDSVTVSNEVQTAKEFIKIIEHAENEYQ 233
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 234 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 274
>ref|XP_862856.1| PREDICTED: similar to capping protein (actin filament) muscle Z-line,
alpha 1 isoform 6 [Canis familiaris].
Length = 265
Score = 419 bits (1078), Expect = e-117
Identities = 205/281 (72%), Positives = 225/281 (80%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MAD E+++SDEEKVRIAAKFI HAPPGEFNEVF EGAAHAFAQYN+D
Sbjct: 1 MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGN +FLDP+N+I FKFDHLRKEA+DP+P + + ++SW
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEDVDGGLKSW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
R S + ALRAYVK+HY NG CTVY K IDGQQTIIACIESHQFQ KNFWNGRWRSEWKFT
Sbjct: 121 RESCDNALRAYVKDHYSNGFCTVYAKAIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITP T QVVG+LKIQVHYYEDGNVQLVSHKD+QDS+TVS
Sbjct: 181 ITPPTAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVS--------------------- 219
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 220 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 260
>ref|XP_855099.1| PREDICTED: similar to capping protein (actin filament) muscle Z-line,
alpha 1 [Canis familiaris].
Length = 255
Score = 393 bits (1009), Expect = e-109
Identities = 197/281 (70%), Positives = 217/281 (77%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MAD E+++S+EEKV AAKFI HAPPGEFNEVF EGAAHAFA YN+D
Sbjct: 1 MADFEDRVSEEEKVHTAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAPYNMD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGN +FLDPKN+I FKFDHL K+A+DP+P + + A
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNSRFLDPKNKISFKFDHLWKDASDPQPEDVDGA---- 116
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
IDGQQTIIACIESHQFQ KNFWNGRWRSEWKFT
Sbjct: 117 ---------------------------IDGQQTIIACIESHQFQPKNFWNGRWRSEWKFT 149
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITP T QVVG+LKIQVHYYEDG+VQLVSHKD+QDS+TVSNEVQTAKEFIKI+E AENEYQ
Sbjct: 150 ITPPTAQVVGVLKIQVHYYEDGSVQLVSHKDVQDSVTVSNEVQTAKEFIKIIEHAENEYQ 209
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTT+KALR QLPVTRTKIDW +IL +IGK
Sbjct: 210 TAISENYQTMSDTTYKALRWQLPVTRTKIDWNKILSYKIGK 250
>ref|XP_534875.1| PREDICTED: similar to F-actin capping protein alpha-3 subunit (CapZ
alpha-3) (Germ cell-specific protein 3) [Canis
familiaris].
Length = 299
Score = 184 bits (468), Expect = 1e-46
Identities = 100/270 (37%), Positives = 151/270 (55%), Gaps = 2/270 (0%)
Frame = +1
Query: 235 LSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLDQFTPVKI 414
LS +EK R+ + +I APPGEF F A Q+ P+ I
Sbjct: 6 LSRKEKERVIRRLLIQAPPGEFVNAFDDLCLLIRDEKLMHHQGECAGHQHCQKYSVPLCI 65
Query: 415 EGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEA-ENAVESWRTSVET 591
+G + VL++ H +G+ +F D ++++ FKFD L+ + D + + N E R V
Sbjct: 66 DG--NPVLLSHHNVVGDYRFFDYQSKLSFKFDLLQNQLRDIQSHGIIRNETEYLRNVVLC 123
Query: 592 ALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFTITPSTT 771
AL+ YV +HYP G C V K + ++ +IACIE H ++ ++ WNG W+S+W F I P T
Sbjct: 124 ALKLYVNDHYPTGNCNVLRKSVKNKEFLIACIEDHSYETRDCWNGLWKSKWIFQINPFLT 183
Query: 772 QVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQTAISEN 951
QV G + +Q H++ N+ + KD+++SL V N+ Q A F ++VE EN +Q A+ E
Sbjct: 184 QVTGRIFVQAHFFRAVNLHIEISKDLKESLEVVNQAQLALNFARLVEEQENIFQAAVLEE 243
Query: 952 YQTMSDTTF-KALRRQLPVTRTKIDWKQIL 1038
Q +S+ K LRR LPVTRT IDW++IL
Sbjct: 244 LQELSNEALRKILRRDLPVTRTLIDWQRIL 273
>ref|XP_862781.1| PREDICTED: similar to capping protein (actin filament) muscle
Z-line, alpha 1 isoform 3 [Canis familiaris].
Length = 52
Score = 63.5 bits (153), Expect = 3e-10
Identities = 32/51 (62%), Positives = 35/51 (68%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAA 366
MAD E+++SDEEKVRIAAKFI HAPPGEFNEVF EGAA
Sbjct: 1 MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAA 51
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,980,684
Number of extensions: 770134
Number of successful extensions: 1839
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1833
Number of HSP's successfully gapped: 9
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007679
(1128 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031630.1| F-actin-capping protein subunit alpha-2 [Mus mu... 531 e-151
Alignment gi|NP_033927.2| F-actin-capping protein subunit alpha-1 [Mus mu... 465 e-131
Alignment gi|XP_003086230.1| PREDICTED: f-actin-capping protein subunit a... 464 e-131
Alignment gi|NP_031631.3| F-actin-capping protein subunit alpha-3 [Mus mu... 182 5e-46
>ref|NP_031630.1| F-actin-capping protein subunit alpha-2 [Mus musculus].
Length = 286
Score = 531 bits (1367), Expect = e-151
Identities = 259/281 (92%), Positives = 264/281 (93%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVF EGAAHAFAQYNLD
Sbjct: 1 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNLD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENA+ESW
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAIESW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
RTSVETALRAYVKEHYPNGVCTVYGKK+DGQQTIIACIESHQFQAKNFWNGRWRSEWKFT
Sbjct: 121 RTSVETALRAYVKEHYPNGVCTVYGKKVDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
+TPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ
Sbjct: 181 VTPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 240
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 241 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 281
>ref|NP_033927.2| F-actin-capping protein subunit alpha-1 [Mus musculus].
Length = 286
Score = 465 bits (1197), Expect = e-131
Identities = 220/281 (78%), Positives = 246/281 (87%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MAD E+++SDEEKVRIAAKFI HAPPGEFNEVF EGAAHAFAQYN+D
Sbjct: 1 MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGY+DQVLITEHGDLGN +FLDP+N+I FKFDHLRKEA+DP+P + + ++SW
Sbjct: 61 QFTPVKIEGYDDQVLITEHGDLGNSRFLDPRNQISFKFDHLRKEASDPQPEDVDGGLKSW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
R S ++ALRAYVK+HY NG CTVY K IDGQQTIIACIESHQFQ KNFWNGRWRSEWKFT
Sbjct: 121 RESCDSALRAYVKDHYSNGFCTVYAKTIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITP + QVVG+LKIQVHYYEDGNVQLVSHKD+QDS+TVSNE+QT KEFIKI+E+AENEYQ
Sbjct: 181 ITPPSAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEIQTTKEFIKIIESAENEYQ 240
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 241 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 281
>ref|XP_003086230.1| PREDICTED: f-actin-capping protein subunit alpha-1-like [Mus
musculus].
Length = 286
Score = 464 bits (1193), Expect = e-131
Identities = 220/281 (78%), Positives = 245/281 (87%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MAD E+++SDEEKVRIAAKFI HAPPGEFNEVF EGAAHAFAQYN+D
Sbjct: 1 MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGY+DQVLITEHGDLGN +FLDP+N+I FKFDHLRKEA+DP+P + + ++SW
Sbjct: 61 QFTPVKIEGYDDQVLITEHGDLGNSRFLDPRNQISFKFDHLRKEASDPQPEDVDGGLKSW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
R S ++ALRAYVK+HY NG CTVY K IDGQQTIIACIESHQFQ KNFWNGRWRSEWKFT
Sbjct: 121 RESCDSALRAYVKDHYSNGFCTVYAKTIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITP + QVVG+LKIQVHYYEDGNVQLVSHKD+QDS+TVSNEVQT KEFIKI+E+AENEYQ
Sbjct: 181 ITPPSAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEVQTTKEFIKIIESAENEYQ 240
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDT FKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 241 TAISENYQTMSDTAFKALRRQLPVTRTKIDWNKILSYKIGK 281
>ref|NP_031631.3| F-actin-capping protein subunit alpha-3 [Mus musculus].
Length = 299
Score = 182 bits (461), Expect = 5e-46
Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 2/270 (0%)
Frame = +1
Query: 235 LSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLDQFTPVKI 414
LS +EK ++ + ++ APPGEF F A Q+ P+ I
Sbjct: 6 LSRKEKEKVIHRLLVQAPPGEFVNAFDDLCLLIRDEKLMHHQGECAGHQHCQKYCVPLCI 65
Query: 415 EGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEA-ENAVESWRTSVET 591
+G + VL++ H +G+ +F D ++++ F+FD L+ + D + + N E R+ V
Sbjct: 66 DG--NPVLLSHHNVMGDFRFFDYQSKLSFRFDLLQNQLRDIQSHGIIRNETEYLRSVVMC 123
Query: 592 ALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFTITPSTT 771
AL+ YV +HYPNG C V K + ++ +IACIE H + WNG W+S+W F + P T
Sbjct: 124 ALKLYVNDHYPNGNCNVLRKTVKSKEFLIACIEDHSYDNGECWNGLWKSKWIFQVNPFLT 183
Query: 772 QVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQTAISEN 951
QV G + +Q H++ N+ + KD+++SL V N+ Q A F ++VE EN++Q A+ E
Sbjct: 184 QVTGRIFVQAHFFRCVNLHIEVSKDLKESLEVVNQAQLALSFARLVEEQENKFQAAVIEE 243
Query: 952 YQTMSDTTF-KALRRQLPVTRTKIDWKQIL 1038
Q +S+ K LRR LPVTRT IDW++IL
Sbjct: 244 LQELSNEALRKILRRDLPVTRTLIDWQRIL 273
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,597,051
Number of extensions: 662634
Number of successful extensions: 1595
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1592
Number of HSP's successfully gapped: 4
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007679
(1128 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090924.1| F-actin-capping protein subunit alpha-2 [Sus... 530 e-151
Alignment gi|XP_003134809.2| PREDICTED: f-actin-capping protein subunit a... 508 e-144
Alignment gi|XP_003134805.2| PREDICTED: f-actin-capping protein subunit a... 473 e-134
Alignment gi|NP_001090923.1| F-actin capping protein subunit alpha 1 [Sus... 469 e-133
Alignment gi|XP_003126497.1| PREDICTED: f-actin-capping protein subunit a... 181 9e-46
Alignment gi|XP_003126496.1| PREDICTED: f-actin-capping protein subunit a... 181 9e-46
>ref|NP_001090924.1| F-actin-capping protein subunit alpha-2 [Sus scrofa].
Length = 286
Score = 530 bits (1366), Expect = e-151
Identities = 261/281 (92%), Positives = 263/281 (93%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVF EGAAHAFAQYNLD
Sbjct: 1 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNLD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDH RKEATDPRPYEAENAVESW
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHFRKEATDPRPYEAENAVESW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT
Sbjct: 121 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ
Sbjct: 181 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 240
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 241 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 281
>ref|XP_003134809.2| PREDICTED: f-actin-capping protein subunit alpha-2-like [Sus scrofa].
Length = 351
Score = 508 bits (1307), Expect = e-144
Identities = 249/268 (92%), Positives = 251/268 (93%)
Frame = +1
Query: 253 VRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLDQFTPVKIEGYEDQ 432
VRIAAKFIIHAPPGEFNEVF EGAAHAFAQYNLDQFTPVKIEGYEDQ
Sbjct: 79 VRIAAKFIIHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNLDQFTPVKIEGYEDQ 138
Query: 433 VLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESWRTSVETALRAYVK 612
VLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESWRTSVETALRAYVK
Sbjct: 139 VLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESWRTSVETALRAYVK 198
Query: 613 EHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFTITPSTTQVVGILK 792
EHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFTITPSTTQVVGILK
Sbjct: 199 EHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFTITPSTTQVVGILK 258
Query: 793 IQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQTAISENYQTMSDT 972
IQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQTAISENYQTMSDT
Sbjct: 259 IQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQTAISENYQTMSDT 318
Query: 973 TFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 319 TFKALRRQLPVTRTKIDWNKILSYKIGK 346
>ref|XP_003134805.2| PREDICTED: f-actin-capping protein subunit alpha-2-like [Sus scrofa].
Length = 278
Score = 473 bits (1217), Expect = e-134
Identities = 229/234 (97%), Positives = 231/234 (98%)
Frame = +1
Query: 355 EGAAHAFAQYNLDQFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATD 534
EGAAHAFAQYNLDQFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATD
Sbjct: 40 EGAAHAFAQYNLDQFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATD 99
Query: 535 PRPYEAENAVESWRTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKN 714
PRPYEAENAVESWRTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKN
Sbjct: 100 PRPYEAENAVESWRTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKN 159
Query: 715 FWNGRWRSEWKFTITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKE 894
FWNGRWRSEWKFTITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKE
Sbjct: 160 FWNGRWRSEWKFTITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKE 219
Query: 895 FIKIVEAAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
FIKIVEAAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 220 FIKIVEAAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 273
>ref|NP_001090923.1| F-actin capping protein subunit alpha 1 [Sus scrofa].
Length = 286
Score = 469 bits (1208), Expect = e-133
Identities = 224/281 (79%), Positives = 246/281 (87%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MAD E+++SDEEKVRIAAKFI HAPPGEFNEVF EGAAHAFAQYN+D
Sbjct: 1 MADFEDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGN +FLDP+N+I FKFDHLRKEA+DP+P E + +++SW
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEEVDGSLKSW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
R S ++ALRAYVK+HY NG CTVY K IDGQQTIIACIESHQFQ KNFWNGRWRSEWKFT
Sbjct: 121 RESCDSALRAYVKDHYSNGFCTVYAKNIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITP T QVVG+LKIQVHYYEDGNVQLVSHKD+QDS+TVSNE QTAKEFIKI+E AENEYQ
Sbjct: 181 ITPPTAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEAQTAKEFIKIIEHAENEYQ 240
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 241 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 281
>ref|XP_003126497.1| PREDICTED: f-actin-capping protein subunit alpha-3-like isoform 2
[Sus scrofa].
Length = 298
Score = 181 bits (458), Expect = 9e-46
Identities = 99/270 (36%), Positives = 152/270 (56%), Gaps = 2/270 (0%)
Frame = +1
Query: 235 LSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLDQFTPVKI 414
LS +EK + + +I APPGEF F A Q+ P+ I
Sbjct: 6 LSRKEKEKAIRRLLIQAPPGEFVNAFDDLCLLIRDEKLMHHQGECAGHQHCQKYSVPLSI 65
Query: 415 EGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEA-ENAVESWRTSVET 591
+G + VL++ H +G+ +F D ++++ FKFD L+ + D + + N E RT V
Sbjct: 66 DG--NAVLLSHHNVVGDYRFFDYQSKLSFKFDLLQNQLKDIQSHGIIRNETEYLRTVVLC 123
Query: 592 ALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFTITPSTT 771
AL+ YV +HYP G C V K + ++ +IACIE H + + +FWNG W+S+W F I P T
Sbjct: 124 ALKLYVNDHYPKGNCNVLRKTVKNKEFLIACIEDHSYNS-DFWNGLWKSKWIFQINPFLT 182
Query: 772 QVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQTAISEN 951
QV G + +Q H++ N+ + KD+++SL V N+ Q A F ++VE EN++Q A+ E
Sbjct: 183 QVTGRIFVQAHFFRCVNLHVEISKDLKESLEVVNQAQLALNFARLVEEQENKFQAAVLEE 242
Query: 952 YQTMSDTTF-KALRRQLPVTRTKIDWKQIL 1038
Q +S+ + +RR LPVTRT IDW++IL
Sbjct: 243 LQELSNEALRRIIRRDLPVTRTLIDWQRIL 272
>ref|XP_003126496.1| PREDICTED: f-actin-capping protein subunit alpha-3-like isoform 1
[Sus scrofa].
Length = 298
Score = 181 bits (458), Expect = 9e-46
Identities = 99/270 (36%), Positives = 152/270 (56%), Gaps = 2/270 (0%)
Frame = +1
Query: 235 LSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLDQFTPVKI 414
LS +EK + + +I APPGEF F A Q+ P+ I
Sbjct: 6 LSRKEKEKAIRRLLIQAPPGEFVNAFDDLCLLIRDEKLMHHQGECAGHQHCQKYSVPLSI 65
Query: 415 EGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEA-ENAVESWRTSVET 591
+G + VL++ H +G+ +F D ++++ FKFD L+ + D + + N E RT V
Sbjct: 66 DG--NAVLLSHHNVVGDYRFFDYQSKLSFKFDLLQNQLKDIQSHGIIRNETEYLRTVVLC 123
Query: 592 ALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFTITPSTT 771
AL+ YV +HYP G C V K + ++ +IACIE H + + +FWNG W+S+W F I P T
Sbjct: 124 ALKLYVNDHYPKGNCNVLRKTVKNKEFLIACIEDHSYNS-DFWNGLWKSKWIFQINPFLT 182
Query: 772 QVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQTAISEN 951
QV G + +Q H++ N+ + KD+++SL V N+ Q A F ++VE EN++Q A+ E
Sbjct: 183 QVTGRIFVQAHFFRCVNLHVEISKDLKESLEVVNQAQLALNFARLVEEQENKFQAAVLEE 242
Query: 952 YQTMSDTTF-KALRRQLPVTRTKIDWKQIL 1038
Q +S+ + +RR LPVTRT IDW++IL
Sbjct: 243 LQELSNEALRRIIRRDLPVTRTLIDWQRIL 272
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,493,856
Number of extensions: 475755
Number of successful extensions: 1121
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1113
Number of HSP's successfully gapped: 6
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007679
(1128 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006127.1| F-actin-capping protein subunit alpha-2 [Homo s... 527 e-150
Alignment gi|NP_006126.1| F-actin-capping protein subunit alpha-1 [Homo s... 470 e-133
Alignment gi|NP_201585.1| F-actin-capping protein subunit alpha-3 [Homo s... 178 9e-45
>ref|NP_006127.1| F-actin-capping protein subunit alpha-2 [Homo sapiens].
Length = 286
Score = 527 bits (1357), Expect = e-150
Identities = 260/281 (92%), Positives = 262/281 (93%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVF EGAAHAFAQYNLD
Sbjct: 1 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNLD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRP E ENAVESW
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPCEVENAVESW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT
Sbjct: 121 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ
Sbjct: 181 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 240
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 241 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 281
>ref|NP_006126.1| F-actin-capping protein subunit alpha-1 [Homo sapiens].
Length = 286
Score = 470 bits (1210), Expect = e-133
Identities = 225/281 (80%), Positives = 246/281 (87%)
Frame = +1
Query: 214 MADLEEQLSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLD 393
MAD ++++SDEEKVRIAAKFI HAPPGEFNEVF EGAAHAFAQYN+D
Sbjct: 1 MADFDDRVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMD 60
Query: 394 QFTPVKIEGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEAENAVESW 573
QFTPVKIEGYEDQVLITEHGDLGN +FLDP+N+I FKFDHLRKEA+DP+P EA+ ++SW
Sbjct: 61 QFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEEADGGLKSW 120
Query: 574 RTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFT 753
R S ++ALRAYVK+HY NG CTVY K IDGQQTIIACIESHQFQ KNFWNGRWRSEWKFT
Sbjct: 121 RESCDSALRAYVKDHYSNGFCTVYAKTIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFT 180
Query: 754 ITPSTTQVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQ 933
ITP T QVVG+LKIQVHYYEDGNVQLVSHKD+QDSLTVSNE QTAKEFIKI+E AENEYQ
Sbjct: 181 ITPPTAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSLTVSNEAQTAKEFIKIIENAENEYQ 240
Query: 934 TAISENYQTMSDTTFKALRRQLPVTRTKIDWKQILKLQIGK 1056
TAISENYQTMSDTTFKALRRQLPVTRTKIDW +IL +IGK
Sbjct: 241 TAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 281
>ref|NP_201585.1| F-actin-capping protein subunit alpha-3 [Homo sapiens].
Length = 299
Score = 178 bits (451), Expect = 9e-45
Identities = 93/270 (34%), Positives = 150/270 (55%), Gaps = 2/270 (0%)
Frame = +1
Query: 235 LSDEEKVRIAAKFIIHAPPGEFNEVFXXXXXXXXXXXXXXEGAAHAFAQYNLDQFTPVKI 414
LS ++K R+ + ++ APPGEF F A Q+ P+ I
Sbjct: 6 LSRKDKERVIRRLLLQAPPGEFVNAFDDLCLLIRDEKLMHHQGECAGHQHCQKYSVPLCI 65
Query: 415 EGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHLRKEATDPRPYEA-ENAVESWRTSVET 591
+G + VL++ H +G+ +F D ++++ FK+D L+ + D + + +N E R +
Sbjct: 66 DG--NPVLLSHHNVMGDYRFFDHQSKLSFKYDLLQNQLKDIQSHGIIQNEAEYLRVVLLC 123
Query: 592 ALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIESHQFQAKNFWNGRWRSEWKFTITPSTT 771
AL+ YV +HYP G C + K + ++ +IACIE H ++ WNG W+S+W F + P T
Sbjct: 124 ALKLYVNDHYPKGNCNMLRKTVKSKEYLIACIEDHNYETGECWNGLWKSKWIFQVNPFLT 183
Query: 772 QVVGILKIQVHYYEDGNVQLVSHKDIQDSLTVSNEVQTAKEFIKIVEAAENEYQTAISEN 951
QV G + +Q H++ N+ + KD+++SL + N+ Q A F ++VE EN++Q A+ E
Sbjct: 184 QVTGRIFVQAHFFRCVNLHIEISKDLKESLEIVNQAQLALSFARLVEEQENKFQAAVLEE 243
Query: 952 YQTMSDTTF-KALRRQLPVTRTKIDWKQIL 1038
Q +S+ K LRR LPVTRT IDW +IL
Sbjct: 244 LQELSNEALRKILRRDLPVTRTLIDWHRIL 273
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,438,696
Number of extensions: 768519
Number of successful extensions: 1811
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1808
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007679
(1128 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 513 e-143
gb|JH118477.1| Sus scrofa unplaced genomic scaffold ChrUScaf552 511 e-142
gb|GL894710.2| Sus scrofa unplaced genomic scaffold ChrUScaf2594 420 e-115
Sscrofa_Chr04 60 3e-06
>Sscrofa_Chr18
|| Length = 61220071
Score = 513 bits (259), Expect = e-143
Identities = 510/586 (87%), Gaps = 10/586 (1%)
Strand = Plus / Plus
Query: 524 aagcaactgatccaagaccctatgaagcagaaaatgcagttgaatcatggagaacttcag 583
||||||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct: 39569770 aagcaactgatgcaagaccctttgaagcagacaatgcaaatgaatcatggagaacttcag 39569829
Query: 584 tagaaactgctctgcgagcttatgtaaaagaacattatccgaatggagtctgcactgtat 643
||||||| ||||| | | ||||| |||||||||||||| | || |||| ||||||||||
Sbjct: 39569830 tagaaacggctcttcaaacttatctaaaagaacattattcaaactgagtttgcactgtat 39569889
Query: 644 atggtnnnnnnn---tagatgggcagcaaaccattattgcatgcatagaaagccatcagt 700
||| | |||||| ||||||||||||||| |||||||| |||||||| |||
Sbjct: 39569890 atgttaaaaaaaaaatagatgaacagcaaaccattattacatgcataaaaagccataagt 39569949
Query: 701 ttcaagcaaaaaacttttggaatggtcgttggaggtcagagtggaagtttacaatcactc 760
|||||| |||||| ||||||||||||| |||| ||||||||||||||| ||||||||||
Sbjct: 39569950 ttcaagaaaaaaa-ttttggaatggtcattggtggtcagagtggaagtctacaatcactt 39570008
Query: 761 cttcaaccactcaggtggttggcatcttgaaaattcaggttcattattatgaagatggt- 819
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 39570009 cttcaaccattcaggtggctggcatcttgaaaattcaggttcattattatgaagatagtt 39570068
Query: 820 aatgttcagctagtgagtcataaagatatacaagattccctaacagtgtctaatgaggtg 879
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 39570069 aatgttcagctagtgagtcataaagatatacaagattccctaacagcatctaatgaggtg 39570128
Query: 880 caaacagcaaaagaatttataaagattgtagaggctgcagaaaatgaatatcagactgcc 939
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 39570129 caaagagcaaaagaatttataaagattgtagaggctgcagaaaatgagtatcagactatc 39570188
Query: 940 atcagtgagaattatcagaccatgtcggacactactttcaaagccttacgtcgacagttg 999
|||| | |||||||| |||| | || |||||||||||||||| |||| ||| | |||||
Sbjct: 39570189 atcattaagaattatgagacaacatcagacactactttcaaagtcttatgtcaagagttg 39570248
Query: 1000 ccagttacacgcactaagattgattggaaacagatccttaagctac-agattggca-aga 1057
|||| ||||| ||| | || ||| ||||| |||||||| ||| || ||||||||| |||
Sbjct: 39570249 ccagctacacacacaaggactgactggaacaagatcctt-agccacaagattggcataga 39570307
Query: 1058 gatgcagaatgcataaagat-cacattgcatgaccggatcatttta 1102
|||||||| ||| | ||||| |||||||||||| |||||||||||
Sbjct: 39570308 gatgcagagtgcct-aagatgaacattgcatgactggatcatttta 39570352
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Minus
Query: 431 aggtattgataacagaacatggtgacttgggaaatggaaagtttttggatccaaaaaaca 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31275430 aggtattgataacagaacatggtgacttgggaaatggaaagtttttggatccaaaaaaca 31275371
Query: 491 gaatctgtttcaaatttgatcacttaagaaaggaagcaactgatccaagaccctatgaag 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31275370 gaatctgtttcaaatttgatcacttaagaaaggaagcaactgatccaagaccctatgaag 31275311
Query: 551 cagaaaatgcagttgaatcatggagaacttcagtagaaactgctctgcgagcttatgtaa 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31275310 cagaaaatgcagttgaatcatggagaacttcagtagaaactgctctgcgagcttatgtaa 31275251
Query: 611 aagaacattatccgaatggagtctgcactgta 642
||||||||||||||||||||||||||||||||
Sbjct: 31275250 aagaacattatccgaatggagtctgcactgta 31275219
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Minus
Query: 431 aggtattgataacagaacatggtgacttgggaaatggaaagtttttggatccaaaaaaca 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31376047 aggtattgataacagaacatggtgacttgggaaatggaaagtttttggatccaaaaaaca 31375988
Query: 491 gaatctgtttcaaatttgatcacttaagaaaggaagcaactgatccaagaccctatgaag 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31375987 gaatctgtttcaaatttgatcacttaagaaaggaagcaactgatccaagaccctatgaag 31375928
Query: 551 cagaaaatgcagttgaatcatggagaacttcagtagaaactgctctgcgagcttatgtaa 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31375927 cagaaaatgcagttgaatcatggagaacttcagtagaaactgctctgcgagcttatgtaa 31375868
Query: 611 aagaacattatccgaatggagtctgcactgta 642
||||||||||||||||||||||||||||||||
Sbjct: 31375867 aagaacattatccgaatggagtctgcactgta 31375836
Score = 311 bits (157), Expect = 5e-82
Identities = 295/344 (85%), Gaps = 19/344 (5%)
Strand = Plus / Plus
Query: 206 gaaggaaaatggcggatttggaagagcagttgtctgatgaggagaaggtacgtatagcag 265
|||||||||||| |||| |||| |||||||| ||||||||||||||||| | |||||||
Sbjct: 39569131 gaaggaaaatggtggatctggaggagcagttttctgatgaggagaaggtgcatatagcaa 39569190
Query: 266 cgaaattcatcattcatgcccctcctggagaatttaatgaggtgtttaatgatgttcggt 325
| |||||||||||||| | | |||||||||||||||||||| ||||||| ||||| |||
Sbjct: 39569191 caaaattcatcattcacgtctctcctggagaatttaatgagctgtttaagaatgtttggt 39569250
Query: 326 tactgcttaataatgataatcttctcagggaaggagcagccca----------------- 368
|||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 39569251 tactacttaataaagataatcttctcagggaaggagctgccagcctttttttttttttag 39569310
Query: 369 tgcatttgcacagtataacctggaccagtttactccagtaaaaattgaaggttatgaaga 428
||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||
Sbjct: 39569311 tgcatttgcacagtataacttggactagtttactccagtaaaacttgaagggtatgaaga 39569370
Query: 429 tcaggtattgataacagaacatggtgacttgggaaatggaaagtttttggatccaaaaaa 488
|||| |||||||||| |||| ||||||||| ||||| |||||||||||||||||||||
Sbjct: 39569371 tcagttattgataactgaacctggtgacttaggaaa--caaagtttttggatccaaaaaa 39569428
Query: 489 cagaatctgtttcaaatttgatcacttaagaaaggaagcaactg 532
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 39569429 cagactctgtttcaaatttgatcacttaagaaaggaagcaactg 39569472
Score = 264 bits (133), Expect = 9e-68
Identities = 180/189 (95%), Gaps = 5/189 (2%)
Strand = Plus / Minus
Query: 932 agactgccatcagtgagaattatcagaccatgtcggacactactttcaaagccttacgtc 991
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 31263256 agactgccatcagtgagaattatcagacaatgtcggacactactttcaaagccttacgtc 31263197
Query: 992 gacagttgccagttacacgcactaagattgattggaaacagatccttaagctac-agatt 1050
||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||
Sbjct: 31263196 gacagttgccagttacacgcactaagattgattggaacaagatcctt-agctacaagatt 31263138
Query: 1051 ggc-aagagatgcagaatgcataaagatc-acattgcatgaccggatcattttaatgtct 1108
||| |||||||||||||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct: 31263137 ggcaaagagatgcagaatgcat-aagatcaacattgcatgaccggatcattttagtgtct 31263079
Query: 1109 ttgcgtttt 1117
|||||||||
Sbjct: 31263078 ttgcgtttt 31263070
Score = 264 bits (133), Expect = 9e-68
Identities = 180/189 (95%), Gaps = 5/189 (2%)
Strand = Plus / Minus
Query: 932 agactgccatcagtgagaattatcagaccatgtcggacactactttcaaagccttacgtc 991
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 31363868 agactgccatcagtgagaattatcagacaatgtcggacactactttcaaagccttacgtc 31363809
Query: 992 gacagttgccagttacacgcactaagattgattggaaacagatccttaagctac-agatt 1050
||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||
Sbjct: 31363808 gacagttgccagttacacgcactaagattgattggaacaagatcctt-agctacaagatt 31363750
Query: 1051 ggc-aagagatgcagaatgcataaagatc-acattgcatgaccggatcattttaatgtct 1108
||| |||||||||||||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct: 31363749 ggcaaagagatgcagaatgcat-aagatcaacattgcatgaccggatcattttagtgtct 31363691
Query: 1109 ttgcgtttt 1117
|||||||||
Sbjct: 31363690 ttgcgtttt 31363682
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 139 aggaccgcacgggaagggggaagtcaggtggctgccaccgctgccgccgcgccgcgatct 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31412488 aggaccgcacgggaagggggaagtcaggtggctgccaccgctgccgccgcgccgcgatct 31412429
Query: 199 gtcgccggaaggaaaatggcggatttggaagagcagttgtctgatgaggagaaggta 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31412428 gtcgccggaaggaaaatggcggatttggaagagcagttgtctgatgaggagaaggta 31412372
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 719 ggaatggtcgttggaggtcagagtggaagtttacaatcactccttcaaccactcaggtgg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31269790 ggaatggtcgttggaggtcagagtggaagtttacaatcactccttcaaccactcaggtgg 31269731
Query: 779 ttggcatcttgaaaattcaggt 800
||||||||||||||||||||||
Sbjct: 31269730 ttggcatcttgaaaattcaggt 31269709
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 719 ggaatggtcgttggaggtcagagtggaagtttacaatcactccttcaaccactcaggtgg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31370406 ggaatggtcgttggaggtcagagtggaagtttacaatcactccttcaaccactcaggtgg 31370347
Query: 779 ttggcatcttgaaaattcaggt 800
||||||||||||||||||||||
Sbjct: 31370346 ttggcatcttgaaaattcaggt 31370325
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 797 aggttcattattatgaagatggtaatgttcagctagtgagtcataaagatatacaagatt 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31267726 aggttcattattatgaagatggtaatgttcagctagtgagtcataaagatatacaagatt 31267667
Query: 857 ccctaacagtgtct 870
||||||||||||||
Sbjct: 31267666 ccctaacagtgtct 31267653
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 797 aggttcattattatgaagatggtaatgttcagctagtgagtcataaagatatacaagatt 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31368342 aggttcattattatgaagatggtaatgttcagctagtgagtcataaagatatacaagatt 31368283
Query: 857 ccctaacagtgtct 870
||||||||||||||
Sbjct: 31368282 ccctaacagtgtct 31368269
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 369 tgcatttgcacagtataacctggaccagtttactccagtaaaaattgaaggttatgaaga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31280873 tgcatttgcacagtataacctggaccagtttactccagtaaaaattgaaggttatgaaga 31280814
Query: 429 tcaggtat 436
||||||||
Sbjct: 31280813 tcaggtat 31280806
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 369 tgcatttgcacagtataacctggaccagtttactccagtaaaaattgaaggttatgaaga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31381486 tgcatttgcacagtataacctggaccagtttactccagtaaaaattgaaggttatgaaga 31381427
Query: 429 tcaggtat 436
||||||||
Sbjct: 31381426 tcaggtat 31381419
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 1 tcccggccgccgagagatctgcgcacgcgcatagccgtgcttgggctccgccggccggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31412626 tcccggccgccgagagatctgcgcacgcgcatagccgtgcttgggctccgccggccggga 31412567
Query: 61 ggaggga 67
|||||||
Sbjct: 31412566 ggaggga 31412560
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 251 aggtacgtatagcagcgaaattcatcattcatgcccctcctggagaatttaatgaggtgt 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31286328 aggtacgtatagcagcgaaattcatcattcatgcccctcctggagaatttaatgaggtgt 31286269
Query: 311 ttaatg 316
||||||
Sbjct: 31286268 ttaatg 31286263
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 251 aggtacgtatagcagcgaaattcatcattcatgcccctcctggagaatttaatgaggtgt 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31386941 aggtacgtatagcagcgaaattcatcattcatgcccctcctggagaatttaatgaggtgt 31386882
Query: 311 ttaatg 316
||||||
Sbjct: 31386881 ttaatg 31386876
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 656 tagatgggcagcaaaccattattgcatgcatagaaagccatcagtttcaagcaaaaaact 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31273521 tagatgggcagcaaaccattattgcatgcatagaaagccatcagtttcaagcaaaaaact 31273462
Query: 716 tttgg 720
|||||
Sbjct: 31273461 tttgg 31273457
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 656 tagatgggcagcaaaccattattgcatgcatagaaagccatcagtttcaagcaaaaaact 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31374137 tagatgggcagcaaaccattattgcatgcatagaaagccatcagtttcaagcaaaaaact 31374078
Query: 716 tttgg 720
|||||
Sbjct: 31374077 tttgg 31374073
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 871 aatgaggtgcaaacagcaaaagaatttataaagattgtagaggctgcagaaaatgaatat 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31264048 aatgaggtgcaaacagcaaaagaatttataaagattgtagaggctgcagaaaatgaatat 31263989
Query: 931 cag 933
|||
Sbjct: 31263988 cag 31263986
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 871 aatgaggtgcaaacagcaaaagaatttataaagattgtagaggctgcagaaaatgaatat 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31364660 aatgaggtgcaaacagcaaaagaatttataaagattgtagaggctgcagaaaatgaatat 31364601
Query: 931 cag 933
|||
Sbjct: 31364600 cag 31364598
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 316 gatgttcggttactgcttaataatgataatcttctcagggaaggagcagccca 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31284747 gatgttcggttactgcttaataatgataatcttctcagggaaggagcagccca 31284695
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 316 gatgttcggttactgcttaataatgataatcttctcagggaaggagcagccca 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31385360 gatgttcggttactgcttaataatgataatcttctcagggaaggagcagccca 31385308
>gb|JH118477.1| Sus scrofa unplaced genomic scaffold ChrUScaf552
Length = 188318
Score = 511 bits (258), Expect = e-142
Identities = 507/585 (86%), Gaps = 8/585 (1%)
Strand = Plus / Minus
Query: 524 aagcaactgatccaagaccctatgaagcagaaaatgcagttgaatcatggagaacttcag 583
||||||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct: 71645 aagcaactgatgcaagaccctttgaagcagacaatgcaaatgaatcatggagaacttcag 71586
Query: 584 tagaaactgctctgcgagcttatgtaaaagaacattatccgaatggagtctgcactgtat 643
||||||| ||||| | | ||||| |||||||||||||| | || |||| ||||||||||
Sbjct: 71585 tagaaacggctcttcaaacttatctaaaagaacattattcaaactgagtttgcactgtat 71526
Query: 644 atggtnnnnnnn---tagatgggcagcaaaccattattgcatgcatagaaagccatcagt 700
||| | || ||| ||||||||||||||| |||||||| |||||||| |||
Sbjct: 71525 atgttaaaaaaaaaatacatgaacagcaaaccattattacatgcataaaaagccataagt 71466
Query: 701 ttcaagcaaaaaacttttggaatggtcgttggaggtcagagtggaagtttacaatcactc 760
|||||| |||||| ||||||||||||| |||| ||||||||||||||| ||||||||||
Sbjct: 71465 ttcaagaaaaaaa-ttttggaatggtcattggtggtcagagtggaagtctacaatcactt 71407
Query: 761 cttcaaccactcaggtggttggcatcttgaaaattcaggttcattattatgaagatggt- 819
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 71406 cttcaaccattcaggtggctggcatcttgaaaattcaggttcattattatgaagatagtt 71347
Query: 820 aatgttcagctagtgagtcataaagatatacaagattccctaacagtgtctaatgaggtg 879
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 71346 aatgttcagctagtgagtcataaagatatacaagattccctaacagcatctaatgaggtg 71287
Query: 880 caaacagcaaaagaatttataaagattgtagaggctgcagaaaatgaatatcagactgcc 939
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 71286 caaagagcaaaagaatttataaagattgtagaggctgcagaaaatgagtatcagactatc 71227
Query: 940 atcagtgagaattatcagaccatgtcggacactactttcaaagccttacgtcgacagttg 999
|||| | |||||||| |||| | || ||||||||||||||||||||| ||| | |||||
Sbjct: 71226 atcattaagaattatgagacaacatcagacactactttcaaagccttatgtcaagagttg 71167
Query: 1000 ccagttacacgcactaagattgattggaaacagatccttaagctacagattggca-agag 1058
|||| ||||| ||| | || ||| ||||| ||||||||| | ||||||||| ||||
Sbjct: 71166 ccagctacacacacaaggactgactggaacaagatccttagccgcaagattggcatagag 71107
Query: 1059 atgcagaatgcataaagat-cacattgcatgaccggatcatttta 1102
||||||| ||| | ||||| |||||||||||| |||||||||||
Sbjct: 71106 atgcagagtgcct-aagatgaacattgcatgactggatcatttta 71063
Score = 222 bits (112), Expect = 3e-55
Identities = 145/155 (93%), Gaps = 2/155 (1%)
Strand = Plus / Minus
Query: 369 tgcatttgcacagtataacctggaccagtttactccagtaaaaattgaaggttatgaaga 428
||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 71825 tgcatttgcacagtataacttggactagtttactccagtaaaaattgaagggtatgaaga 71766
Query: 429 tcaggtattgataacagaacatggtgacttgggaaatggaaagtttttggatccaaaaaa 488
||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||
Sbjct: 71765 tcaggtattgataactgaacctggtgacttaggaaa--caaagtttttggatccaaaaaa 71708
Query: 489 cagaatctgtttcaaatttgatcacttaagaaagg 523
|||| ||||||||||||||||||||||||||||||
Sbjct: 71707 cagactctgtttcaaatttgatcacttaagaaagg 71673
Score = 176 bits (89), Expect = 2e-41
Identities = 140/157 (89%)
Strand = Plus / Minus
Query: 206 gaaggaaaatggcggatttggaagagcagttgtctgatgaggagaaggtacgtatagcag 265
|||||||||||| |||| |||| |||||||| ||||||||||||||||| | |||||||
Sbjct: 72021 gaaggaaaatggtggatctggaggagcagttttctgatgaggagaaggtgcatatagcaa 71962
Query: 266 cgaaattcatcattcatgcccctcctggagaatttaatgaggtgtttaatgatgttcggt 325
| |||||||||||||| | | |||||||||||||||||||| ||||||| ||||| |||
Sbjct: 71961 caaaattcatcattcacgtctctcctggagaatttaatgagctgtttaagaatgtttggt 71902
Query: 326 tactgcttaataatgataatcttctcagggaaggagc 362
|||| |||||||| |||||||||||||||||||||||
Sbjct: 71901 tactacttaataaagataatcttctcagggaaggagc 71865
>gb|GL894710.2| Sus scrofa unplaced genomic scaffold ChrUScaf2594
Length = 103129
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Plus
Query: 431 aggtattgataacagaacatggtgacttgggaaatggaaagtttttggatccaaaaaaca 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64495 aggtattgataacagaacatggtgacttgggaaatggaaagtttttggatccaaaaaaca 64554
Query: 491 gaatctgtttcaaatttgatcacttaagaaaggaagcaactgatccaagaccctatgaag 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64555 gaatctgtttcaaatttgatcacttaagaaaggaagcaactgatccaagaccctatgaag 64614
Query: 551 cagaaaatgcagttgaatcatggagaacttcagtagaaactgctctgcgagcttatgtaa 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64615 cagaaaatgcagttgaatcatggagaacttcagtagaaactgctctgcgagcttatgtaa 64674
Query: 611 aagaacattatccgaatggagtctgcactgta 642
||||||||||||||||||||||||||||||||
Sbjct: 64675 aagaacattatccgaatggagtctgcactgta 64706
Score = 264 bits (133), Expect = 9e-68
Identities = 180/189 (95%), Gaps = 5/189 (2%)
Strand = Plus / Plus
Query: 932 agactgccatcagtgagaattatcagaccatgtcggacactactttcaaagccttacgtc 991
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 76729 agactgccatcagtgagaattatcagacaatgtcggacactactttcaaagccttacgtc 76788
Query: 992 gacagttgccagttacacgcactaagattgattggaaacagatccttaagctac-agatt 1050
||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||
Sbjct: 76789 gacagttgccagttacacgcactaagattgattggaacaagatcctt-agctacaagatt 76847
Query: 1051 ggc-aagagatgcagaatgcataaagatc-acattgcatgaccggatcattttaatgtct 1108
||| |||||||||||||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct: 76848 ggcaaagagatgcagaatgcat-aagatcaacattgcatgaccggatcattttagtgtct 76906
Query: 1109 ttgcgtttt 1117
|||||||||
Sbjct: 76907 ttgcgtttt 76915
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 719 ggaatggtcgttggaggtcagagtggaagtttacaatcactccttcaaccactcaggtgg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70044 ggaatggtcgttggaggtcagagtggaagtttacaatcactccttcaaccactcaggtgg 70103
Query: 779 ttggcatcttgaaaattcaggt 800
||||||||||||||||||||||
Sbjct: 70104 ttggcatcttgaaaattcaggt 70125
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 797 aggttcattattatgaagatggtaatgttcagctagtgagtcataaagatatacaagatt 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72188 aggttcattattatgaagatggtaatgttcagctagtgagtcataaagatatacaagatt 72247
Query: 857 ccctaacagtgtct 870
||||||||||||||
Sbjct: 72248 ccctaacagtgtct 72261
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 369 tgcatttgcacagtataacctggaccagtttactccagtaaaaattgaaggttatgaaga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59365 tgcatttgcacagtataacctggaccagtttactccagtaaaaattgaaggttatgaaga 59424
Query: 429 tcaggtat 436
||||||||
Sbjct: 59425 tcaggtat 59432
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 251 aggtacgtatagcagcgaaattcatcattcatgcccctcctggagaatttaatgaggtgt 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53839 aggtacgtatagcagcgaaattcatcattcatgcccctcctggagaatttaatgaggtgt 53898
Query: 311 ttaatg 316
||||||
Sbjct: 53899 ttaatg 53904
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 656 tagatgggcagcaaaccattattgcatgcatagaaagccatcagtttcaagcaaaaaact 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66350 tagatgggcagcaaaccattattgcatgcatagaaagccatcagtttcaagcaaaaaact 66409
Query: 716 tttgg 720
|||||
Sbjct: 66410 tttgg 66414
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 871 aatgaggtgcaaacagcaaaagaatttataaagattgtagaggctgcagaaaatgaatat 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75937 aatgaggtgcaaacagcaaaagaatttataaagattgtagaggctgcagaaaatgaatat 75996
Query: 931 cag 933
|||
Sbjct: 75997 cag 75999
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 316 gatgttcggttactgcttaataatgataatcttctcagggaaggagcagccca 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55499 gatgttcggttactgcttaataatgataatcttctcagggaaggagcagccca 55551
>Sscrofa_Chr04
|| Length = 143465943
Score = 60.0 bits (30), Expect = 3e-06
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 796 caggttcattattatgaagatggtaatgttcagctagtgagtcataaaga 845
|||||||| |||||||||||||| ||||||||| | || |||||||||||
Sbjct: 117813187 caggttcactattatgaagatggcaatgttcagttggttagtcataaaga 117813236
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,001,234
Number of extensions: 240
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 38
Length of query: 1128
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1107
Effective length of database: 2,808,413,156
Effective search space: 3108913363692
Effective search space used: 3108913363692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)