Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007682
(1096 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070425.1| proline-rich nuclear receptor coactivator 2 ... 207 2e-53
>ref|NP_001070425.1| proline-rich nuclear receptor coactivator 2 [Bos taurus].
Length = 139
Score = 207 bits (526), Expect = 2e-53
Identities = 106/139 (76%), Positives = 109/139 (78%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMX 617
MGGGERYNIPAPQ+RNVSKNQQQL+RQKTKDQNSQMKIVHKKKERGHTYNSS+AAWQAM
Sbjct: 1 MGGGERYNIPAPQTRNVSKNQQQLSRQKTKDQNSQMKIVHKKKERGHTYNSSSAAWQAMQ 60
Query: 618 XXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSFN 797
SSLSSPTLLFKSQTNQNYAGAKF HWVPVSFN
Sbjct: 61 NGGKNKNFPNNQNWNSSLSSPTLLFKSQTNQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
Query: 798 PSDKEIMTFQLKTLLKVQV 854
PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,100,827
Number of extensions: 765408
Number of successful extensions: 2348
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2345
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007682
(1096 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,663,195
Number of extensions: 789880
Number of successful extensions: 2531
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2530
Number of HSP's successfully gapped: 0
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007682
(1096 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080659.1| proline-rich nuclear receptor coactivator 2 [Mu... 172 4e-43
>ref|NP_080659.1| proline-rich nuclear receptor coactivator 2 [Mus musculus].
Length = 140
Score = 172 bits (436), Expect = 4e-43
Identities = 91/140 (65%), Positives = 97/140 (69%), Gaps = 1/140 (0%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNS-QMKIVHKKKERGHTYNSSAAAWQAM 614
MGGGERYNIP PQSRN SKNQ+Q NRQK+KDQNS Q KI HKKKERGH YN +AAAWQAM
Sbjct: 1 MGGGERYNIPDPQSRNASKNQEQQNRQKSKDQNSSQTKIAHKKKERGHGYNPAAAAWQAM 60
Query: 615 XXXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSF 794
+ LSSP+LLFKSQ +QNYAGAKF HWV VS
Sbjct: 61 QNGGKTKSLSNNSNWNAGLSSPSLLFKSQASQNYAGAKFSEPPSPSVLPKPPSHWVHVSL 120
Query: 795 NPSDKEIMTFQLKTLLKVQV 854
NPSDKE MTFQLKTLLKVQV
Sbjct: 121 NPSDKETMTFQLKTLLKVQV 140
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,941,925
Number of extensions: 665967
Number of successful extensions: 1981
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1963
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007682
(1096 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361165.1| PREDICTED: proline-rich nuclear receptor coa... 211 6e-55
>ref|XP_003361165.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like [Sus
scrofa].
Length = 139
Score = 211 bits (537), Expect = 6e-55
Identities = 109/139 (78%), Positives = 109/139 (78%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMX 617
MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAM
Sbjct: 1 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMQ 60
Query: 618 XXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSFN 797
SSLSSPTLLFKSQTNQNYAGAKF HWVPVSFN
Sbjct: 61 NGGKNKNFPNNQNWNSSLSSPTLLFKSQTNQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
Query: 798 PSDKEIMTFQLKTLLKVQV 854
PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,913,101
Number of extensions: 489985
Number of successful extensions: 1425
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1421
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007682
(1096 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003119128.1| PREDICTED: proline-rich nuclear receptor coa... 201 9e-61
Alignment gi|XP_003119126.1| PREDICTED: proline-rich nuclear receptor coa... 201 1e-51
Alignment gi|XP_003119125.1| PREDICTED: proline-rich nuclear receptor coa... 201 1e-51
Alignment gi|XP_003119124.1| PREDICTED: proline-rich nuclear receptor coa... 201 1e-51
Alignment gi|XP_003119123.1| PREDICTED: proline-rich nuclear receptor coa... 201 1e-51
Alignment gi|XP_003119122.1| PREDICTED: proline-rich nuclear receptor coa... 201 1e-51
Alignment gi|XP_003119121.1| PREDICTED: proline-rich nuclear receptor coa... 201 1e-51
Alignment gi|XP_003119120.1| PREDICTED: proline-rich nuclear receptor coa... 201 1e-51
Alignment gi|XP_003119119.1| PREDICTED: proline-rich nuclear receptor coa... 201 1e-51
Alignment gi|NP_060231.1| proline-rich nuclear receptor coactivator 2 [Ho... 201 1e-51
>ref|XP_003119128.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform
10 [Homo sapiens].
Length = 168
Score = 201 bits (511), Expect(2) = 9e-61
Identities = 104/139 (74%), Positives = 105/139 (75%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMX 617
MGGGERYNIPAPQSRNVSKNQQQLNRQKTK+QNSQMKIVHKKKERGH YNSSAAAWQAM
Sbjct: 30 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ 89
Query: 618 XXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSFN 797
SSLS P LLFKSQ NQNYAGAKF HWVPVSFN
Sbjct: 90 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 149
Query: 798 PSDKEIMTFQLKTLLKVQV 854
PSDKEIMTFQLKTLLKVQV
Sbjct: 150 PSDKEIMTFQLKTLLKVQV 168
Score = 52.0 bits (123), Expect(2) = 9e-61
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +1
Query: 253 MLASVPRLNSADRPMKTSVLRQRKGSVRK 339
MLAS PRLNSADRPMKTSVLRQRKGS K
Sbjct: 1 MLASAPRLNSADRPMKTSVLRQRKGSKLK 29
>ref|XP_003119126.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform
8 [Homo sapiens].
Length = 139
Score = 201 bits (511), Expect = 1e-51
Identities = 104/139 (74%), Positives = 105/139 (75%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMX 617
MGGGERYNIPAPQSRNVSKNQQQLNRQKTK+QNSQMKIVHKKKERGH YNSSAAAWQAM
Sbjct: 1 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ 60
Query: 618 XXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSFN 797
SSLS P LLFKSQ NQNYAGAKF HWVPVSFN
Sbjct: 61 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
Query: 798 PSDKEIMTFQLKTLLKVQV 854
PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139
>ref|XP_003119125.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform
7 [Homo sapiens].
Length = 139
Score = 201 bits (511), Expect = 1e-51
Identities = 104/139 (74%), Positives = 105/139 (75%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMX 617
MGGGERYNIPAPQSRNVSKNQQQLNRQKTK+QNSQMKIVHKKKERGH YNSSAAAWQAM
Sbjct: 1 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ 60
Query: 618 XXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSFN 797
SSLS P LLFKSQ NQNYAGAKF HWVPVSFN
Sbjct: 61 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
Query: 798 PSDKEIMTFQLKTLLKVQV 854
PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139
>ref|XP_003119124.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform
6 [Homo sapiens].
Length = 139
Score = 201 bits (511), Expect = 1e-51
Identities = 104/139 (74%), Positives = 105/139 (75%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMX 617
MGGGERYNIPAPQSRNVSKNQQQLNRQKTK+QNSQMKIVHKKKERGH YNSSAAAWQAM
Sbjct: 1 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ 60
Query: 618 XXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSFN 797
SSLS P LLFKSQ NQNYAGAKF HWVPVSFN
Sbjct: 61 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
Query: 798 PSDKEIMTFQLKTLLKVQV 854
PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139
>ref|XP_003119123.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform
5 [Homo sapiens].
Length = 139
Score = 201 bits (511), Expect = 1e-51
Identities = 104/139 (74%), Positives = 105/139 (75%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMX 617
MGGGERYNIPAPQSRNVSKNQQQLNRQKTK+QNSQMKIVHKKKERGH YNSSAAAWQAM
Sbjct: 1 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ 60
Query: 618 XXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSFN 797
SSLS P LLFKSQ NQNYAGAKF HWVPVSFN
Sbjct: 61 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
Query: 798 PSDKEIMTFQLKTLLKVQV 854
PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139
>ref|XP_003119122.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform
4 [Homo sapiens].
Length = 139
Score = 201 bits (511), Expect = 1e-51
Identities = 104/139 (74%), Positives = 105/139 (75%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMX 617
MGGGERYNIPAPQSRNVSKNQQQLNRQKTK+QNSQMKIVHKKKERGH YNSSAAAWQAM
Sbjct: 1 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ 60
Query: 618 XXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSFN 797
SSLS P LLFKSQ NQNYAGAKF HWVPVSFN
Sbjct: 61 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
Query: 798 PSDKEIMTFQLKTLLKVQV 854
PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139
>ref|XP_003119121.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform
3 [Homo sapiens].
Length = 139
Score = 201 bits (511), Expect = 1e-51
Identities = 104/139 (74%), Positives = 105/139 (75%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMX 617
MGGGERYNIPAPQSRNVSKNQQQLNRQKTK+QNSQMKIVHKKKERGH YNSSAAAWQAM
Sbjct: 1 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ 60
Query: 618 XXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSFN 797
SSLS P LLFKSQ NQNYAGAKF HWVPVSFN
Sbjct: 61 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
Query: 798 PSDKEIMTFQLKTLLKVQV 854
PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139
>ref|XP_003119120.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform
2 [Homo sapiens].
Length = 139
Score = 201 bits (511), Expect = 1e-51
Identities = 104/139 (74%), Positives = 105/139 (75%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMX 617
MGGGERYNIPAPQSRNVSKNQQQLNRQKTK+QNSQMKIVHKKKERGH YNSSAAAWQAM
Sbjct: 1 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ 60
Query: 618 XXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSFN 797
SSLS P LLFKSQ NQNYAGAKF HWVPVSFN
Sbjct: 61 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
Query: 798 PSDKEIMTFQLKTLLKVQV 854
PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139
>ref|XP_003119119.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform
1 [Homo sapiens].
Length = 139
Score = 201 bits (511), Expect = 1e-51
Identities = 104/139 (74%), Positives = 105/139 (75%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMX 617
MGGGERYNIPAPQSRNVSKNQQQLNRQKTK+QNSQMKIVHKKKERGH YNSSAAAWQAM
Sbjct: 1 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ 60
Query: 618 XXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSFN 797
SSLS P LLFKSQ NQNYAGAKF HWVPVSFN
Sbjct: 61 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
Query: 798 PSDKEIMTFQLKTLLKVQV 854
PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139
>ref|NP_060231.1| proline-rich nuclear receptor coactivator 2 [Homo sapiens].
Length = 139
Score = 201 bits (511), Expect = 1e-51
Identities = 104/139 (74%), Positives = 105/139 (75%)
Frame = +3
Query: 438 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQAMX 617
MGGGERYNIPAPQSRNVSKNQQQLNRQKTK+QNSQMKIVHKKKERGH YNSSAAAWQAM
Sbjct: 1 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ 60
Query: 618 XXXXXXXXXXXXXXXSSLSSPTLLFKSQTNQNYAGAKFXXXXXXXXXXXXXXHWVPVSFN 797
SSLS P LLFKSQ NQNYAGAKF HWVPVSFN
Sbjct: 61 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN 120
Query: 798 PSDKEIMTFQLKTLLKVQV 854
PSDKEIMTFQLKTLLKVQV
Sbjct: 121 PSDKEIMTFQLKTLLKVQV 139
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,020,987
Number of extensions: 780084
Number of successful extensions: 2433
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2422
Number of HSP's successfully gapped: 11
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007682
(1096 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893661.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1255 0.0
>gb|GL893661.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2403
Length = 78068
Score = 1255 bits (633), Expect = 0.0
Identities = 673/681 (98%), Gaps = 4/681 (0%)
Strand = Plus / Minus
Query: 418 aggtgacaaagaagctgaagatgggtggtggagagaggtataacattccagcccctcaat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64032 aggtgacaaagaagctgaagatgggtggtggagagaggtataacattccagcccctcaat 63973
Query: 478 ctagaaatgttagtaagaaccaacaacagcttaatagacagaagaccaaggatcagaatt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63972 ctagaaatgttagtaagaaccaacaacagcttaatagacagaagaccaaggatcagaatt 63913
Query: 538 cccagatgaagattgttcataagaaaaaggaaagaggacatacttacaattcatcagcag 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63912 cccagatgaagattgttcataagaaaaaggaaagaggacatacttacaattcatcagcag 63853
Query: 598 ctgcatggcaagccatgcaaaatggggggaagaacaaaaattttccaaataatcaaaatt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63852 ctgcatggcaagccatgcaaaatggggggaagaacaaaaattttccaaataatcaaaatt 63793
Query: 658 ggaactctagcttatcaagtcccaccttactttttaagtctcaaactaatcagaactatg 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63792 ggaactctagcttatcaagtcccaccttactttttaagtctcaaactaatcagaactatg 63733
Query: 718 ctggagccaaatttagtgagccaccgtcaccaagtgttcttcctaaaccaccaagccact 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63732 ctggagccaaatttagtgagccaccgtcaccaagtgttcttcctaaaccaccaagccact 63673
Query: 778 gggttcctgtttccttcaatccttccgataaagaaataatgacatttcaactaaaaacct 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63672 gggttcctgtttccttcaatccttccgataaagaaataatgacatttcaactaaaaacct 63613
Query: 838 tacttaaagtacaggtatgagataaagtactaatgttcaaagctagtcaatatttaggga 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63612 tacttaaagtacaggtatgagataaagtactaatgttcaaagctagtcaatatttaggga 63553
Query: 898 taattggcaattgtttcagactaaatacacaaggggaattaatctgtaaaatagcttgcg 957
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 63552 taattggcaattgtttcagactaaatacacaa-gggaattaatctgtaaaatagcttgcg 63494
Query: 958 tagaaaatataattagacttcatcttttatgtggtatgtgcattgatgtaatgatagaat 1017
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 63493 tagaaaatataattagacttcatcttttatgtgttatgtgcattgatgtaatgatagaat 63434
Query: 1018 cagtgccactttactaggatttgtacttgattatcaatactaaaattaagtg-tttcaat 1076
|||||| |||| |||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 63433 cagtgcaacttaactaagatttgtacttgattatcaatact-aaattaagtgttttcaat 63375
Query: 1077 ggattaa-catttaaatgaaa 1096
||||||| |||||||||||||
Sbjct: 63374 ggattaaccatttaaatgaaa 63354
Score = 406 bits (205), Expect = e-110
Identities = 208/209 (99%)
Strand = Plus / Minus
Query: 213 gctaggacttctctcaaggttgtgtgctgaggagactcagatgttggcctcagttcctag 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64525 gctaggacttctctcaaggttgtgtgctgaggagactcagatgttggcctcagttcctag 64466
Query: 273 gctgaactcagcagatcggcccatgaaaacttctgtactgagacaaaggaaaggatctgt 332
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 64465 gctgaactcagcagatcggcccatgaaaacttctgtattgagacaaaggaaaggatctgt 64406
Query: 333 cagaaagcaacatctcttatcctgggcttggcggcaaggaagaggacaggtggtggaaat 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64405 cagaaagcaacatctcttatcctgggcttggcggcaaggaagaggacaggtggtggaaat 64346
Query: 393 cctgcaatctgaaaagcagactgaaaggt 421
|||||||||||||||||||||||||||||
Sbjct: 64345 cctgcaatctgaaaagcagactgaaaggt 64317
Score = 351 bits (177), Expect = 5e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 36 tccattttgtcggtagaggcagaaggaggaggtcggccgggacgttaaggtggcctgcag 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65692 tccattttgtcggtagaggcagaaggaggaggtcggccgggacgttaaggtggcctgcag 65633
Query: 96 caggctcgtcggtgcccgttggcttcgctcgttccgtgcctcgtctctccctggaagggg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65632 caggctcgtcggtgcccgttggcttcgctcgttccgtgcctcgtctctccctggaagggg 65573
Query: 156 aggggggcttcgacgccgagcaggatccgccgctgtcgtagtcccgagcttgaagtc 212
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65572 aggggggcttcgacgccgagcaggatccgccgctgtcgtagtcccgagcttgaagtc 65516
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,570,504
Number of extensions: 304
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 3
Length of query: 1096
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1075
Effective length of database: 2,808,413,156
Effective search space: 3019044142700
Effective search space used: 3019044142700
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)