Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007685
(1063 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033125.1| ETS homologous factor [Bos taurus]. 587 e-168
Alignment gi|NP_001019740.1| ETS-related transcription factor Elf-5 [Bos ... 187 1e-47
Alignment gi|NP_001092379.1| ETS-related transcription factor Elf-3 [Bos ... 154 2e-37
Alignment gi|NP_001178067.1| ETS-related transcription factor Elf-2 [Bos ... 90 4e-18
Alignment gi|XP_002694390.1| PREDICTED: E74-like factor 2 (ets domain tra... 90 4e-18
Alignment gi|XP_002694389.1| PREDICTED: E74-like factor 2 (ets domain tra... 90 4e-18
Alignment gi|XP_001250103.1| PREDICTED: E74-like factor 2 (ets domain tra... 90 4e-18
Alignment gi|NP_001039763.1| Friend leukemia integration 1 transcription ... 87 3e-17
Alignment gi|NP_001071321.1| ETS-related transcription factor Elf-1 [Bos ... 86 4e-17
Alignment gi|NP_001095653.1| transcriptional regulator ERG [Bos taurus]. 85 1e-16
>ref|NP_001033125.1| ETS homologous factor [Bos taurus].
Length = 300
Score = 587 bits (1514), Expect = e-168
Identities = 275/297 (92%), Positives = 284/297 (95%), Gaps = 1/297 (0%)
Frame = +3
Query: 165 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 344
MILEGSGVMNLNPSNNLLHQ P WTDSY TCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGSGVMNLNPSNNLLHQQPTWTDSYSTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 60
Query: 345 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 524
HLLDTNQLDASCIPFQEFD+NGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDASCIPFQEFDVNGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 120
Query: 525 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 704
LFQSTHNVIVKTEQTDP+IMN+WKEENYL+D NYGSTVDLLDSKTFCRAQISMTTTGHLP
Sbjct: 121 LFQSTHNVIVKTEQTDPSIMNTWKEENYLYDTNYGSTVDLLDSKTFCRAQISMTTTGHLP 180
Query: 705 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 884
+AESPD KKEQDHPTK HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL
Sbjct: 181 IAESPDTKKEQDHPTKPHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 240
Query: 885 KSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
KSEAVAQLWG+KKNNSSMTYEKLSRAMRYYYKREILERVDGR ++ARGWR+
Sbjct: 241 KSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRE 297
>ref|NP_001019740.1| ETS-related transcription factor Elf-5 [Bos taurus].
Length = 255
Score = 187 bits (476), Expect = 1e-47
Identities = 108/291 (37%), Positives = 152/291 (52%), Gaps = 5/291 (1%)
Frame = +3
Query: 201 PSNNLLHQPPAWTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQ 365
P+ + +WTD + F W +HP+YWTK VWEWLQ D +
Sbjct: 12 PNTSFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQYK 71
Query: 366 LDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHN 545
LDA+CI F F+I+G LC M+ +EF AAG G+ LY LQ ++ G ++
Sbjct: 72 LDANCISFCHFNISGLQLCGMTQEEFMEAAGVCGEYLYFILQSIRSQG----------YS 121
Query: 546 VIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDM 725
++T T+ D DS + I
Sbjct: 122 FFNDPDETKATLK------------------DYADSSCLKTSGI---------------- 147
Query: 726 KKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQ 905
K QD + S T + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A+
Sbjct: 148 -KSQDCHSHSRTSLQS---SHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAK 203
Query: 906 LWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLEDARGWRKMK 1058
+WG++K N MTYEKLSRA+RYYYK ILERVD R Y ++A GW++ K
Sbjct: 204 MWGQRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEDK 254
>ref|NP_001092379.1| ETS-related transcription factor Elf-3 [Bos taurus].
Length = 372
Score = 154 bits (388), Expect = 2e-37
Identities = 72/111 (64%), Positives = 87/111 (78%), Gaps = 1/111 (0%)
Frame = +3
Query: 723 MKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVA 902
+ KE + KH PRGTHLWEFIRDIL++P+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 254 LSKESRECLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRQEGVFKFLRSEAVA 313
Query: 903 QLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
QLWG+KK NSSMTYEKLSRAMRYYYKREILERVDGR ++ GW++
Sbjct: 314 QLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGRNSSGWKE 364
>ref|NP_001178067.1| ETS-related transcription factor Elf-2 [Bos taurus].
Length = 582
Score = 89.7 bits (221), Expect = 4e-18
Identities = 42/108 (38%), Positives = 64/108 (59%)
Frame = +3
Query: 711 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 890
+SP D K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 172 QSPISNGSPDLGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 231
Query: 891 EAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLED 1034
+AV++LWG+ KN M YE + RA+RYYY+R IL +V+G+ +D
Sbjct: 232 KAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKD 279
>ref|XP_002694390.1| PREDICTED: E74-like factor 2 (ets domain transcription factor)
isoform 2 [Bos taurus].
Length = 534
Score = 89.7 bits (221), Expect = 4e-18
Identities = 42/108 (38%), Positives = 64/108 (59%)
Frame = +3
Query: 711 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 890
+SP D K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 124 QSPISNGSPDLGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 183
Query: 891 EAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLED 1034
+AV++LWG+ KN M YE + RA+RYYY+R IL +V+G+ +D
Sbjct: 184 KAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKD 231
>ref|XP_002694389.1| PREDICTED: E74-like factor 2 (ets domain transcription factor)
isoform 1 [Bos taurus].
Length = 582
Score = 89.7 bits (221), Expect = 4e-18
Identities = 42/108 (38%), Positives = 64/108 (59%)
Frame = +3
Query: 711 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 890
+SP D K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 172 QSPISNGSPDLGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 231
Query: 891 EAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLED 1034
+AV++LWG+ KN M YE + RA+RYYY+R IL +V+G+ +D
Sbjct: 232 KAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKD 279
>ref|XP_001250103.1| PREDICTED: E74-like factor 2 (ets domain transcription factor)
isoform 2 [Bos taurus].
Length = 534
Score = 89.7 bits (221), Expect = 4e-18
Identities = 42/108 (38%), Positives = 64/108 (59%)
Frame = +3
Query: 711 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 890
+SP D K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 124 QSPISNGSPDLGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 183
Query: 891 EAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLED 1034
+AV++LWG+ KN M YE + RA+RYYY+R IL +V+G+ +D
Sbjct: 184 KAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKD 231
>ref|NP_001039763.1| Friend leukemia integration 1 transcription factor [Bos taurus].
Length = 452
Score = 86.7 bits (213), Expect = 3e-17
Identities = 76/248 (30%), Positives = 117/248 (47%), Gaps = 12/248 (4%)
Frame = +3
Query: 303 PQYWTKYQVWEWLQHLL-DTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG-QLL 476
P WT+ V +WL+ + + ++ FQ D G+ LC ++ ++F RA ++L
Sbjct: 130 PTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMD--GKELCKLNKEDFLRATSLYNTEVL 187
Query: 477 YSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNY--------GS 632
S+L +L+ SS L +T T TDP+ + KE DP+Y GS
Sbjct: 188 LSHLTYLRE----SSLLPYNT------TSHTDPSSRLNVKE-----DPSYDSVRRGGWGS 232
Query: 633 TVD--LLDSKTFCRAQISMTTTGHLPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIR 806
++ L S AQ T P PD + PT S LW+F+
Sbjct: 233 NMNSGLNKSPPLAGAQTMSKNTEQRP---QPDPYQILG-PTSSRLANPGSGQIQLWQFLL 288
Query: 807 DILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKRE 986
+ LL+ N I WE + G F+ + VA+ WGE+K+ +M Y+KLSRA+RYYY +
Sbjct: 289 E-LLSDSANASCITWEG-TNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKN 346
Query: 987 ILERVDGR 1010
I+ +V G+
Sbjct: 347 IMTKVHGK 354
>ref|NP_001071321.1| ETS-related transcription factor Elf-1 [Bos taurus].
Length = 614
Score = 86.3 bits (212), Expect = 4e-17
Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 17/133 (12%)
Frame = +3
Query: 687 TTGHLPVAESPDMKKEQ----------DHPTKS---HTKKHNPRGT----HLWEFIRDIL 815
T H P SP+ K + D PT + KK N G +LWEF+ +L
Sbjct: 159 TYAHSPGPSSPEQPKRKKGRKTKPPRPDSPTTTPNISVKKKNKDGKGNTIYLWEFLLALL 218
Query: 816 LNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILE 995
+ P IKW R +GIF+ + S+AV++LWG+ KN M YE + RA+RYYY+R IL
Sbjct: 219 QDKATCPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRALRYYYQRGILA 278
Query: 996 RVDGRDWYINLED 1034
+V+G+ +D
Sbjct: 279 KVEGQRLVYQFKD 291
>ref|NP_001095653.1| transcriptional regulator ERG [Bos taurus].
Length = 455
Score = 84.7 bits (208), Expect = 1e-16
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 7/243 (2%)
Frame = +3
Query: 303 PQYWTKYQVWEWLQHLLDTNQL-DASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG-QLL 476
P W+ V +WL+ + L D + FQ D G+ LC M+ +F R + +L
Sbjct: 131 PTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNID--GKELCKMTKDDFQRLTPSYNADIL 188
Query: 477 YSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSK 656
S+L +L+ + L T + + K Q P +M++ + + ++P S S
Sbjct: 189 LSHLHYLR-----ETPLPHLTSDDVDKALQNSPRLMHA-RNTDLPYEPPRRSA---WTSH 239
Query: 657 TFCRAQISMTTTGHLPVAESPDMKKEQDH-----PTKSHTKKHNPRGTHLWEFIRDILLN 821
Q V ++ D + + D PT S LW+F+ + LL+
Sbjct: 240 GHPAPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLE-LLS 298
Query: 822 PDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERV 1001
N I WE + G F+ + VA+ WGE+K+ +M Y+KLSRA+RYYY + I+ +V
Sbjct: 299 DSSNSNCITWEG-TNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKV 357
Query: 1002 DGR 1010
G+
Sbjct: 358 HGK 360
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,696,954
Number of extensions: 1053247
Number of successful extensions: 3053
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 3045
Number of HSP's successfully gapped: 38
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007685
(1063 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540546.2| PREDICTED: similar to ets homologous factor iso... 581 e-166
Alignment gi|XP_857258.1| PREDICTED: similar to ets homologous factor iso... 523 e-148
Alignment gi|XP_851152.1| PREDICTED: similar to E74-like factor 5 ESE-2a ... 194 2e-49
Alignment gi|XP_547356.2| PREDICTED: similar to E74-like factor 3 (ets do... 181 8e-46
Alignment gi|XP_857025.1| PREDICTED: similar to Friend leukemia integrati... 92 1e-18
Alignment gi|XP_546404.2| PREDICTED: similar to Friend leukemia integrati... 90 4e-18
Alignment gi|XP_533288.2| PREDICTED: similar to ETS-related transcription... 88 1e-17
Alignment gi|XP_856018.1| PREDICTED: similar to E74-like factor 2 (ets do... 88 1e-17
Alignment gi|XP_855980.1| PREDICTED: similar to E74-like factor 2 (ets do... 88 1e-17
Alignment gi|XP_857052.1| PREDICTED: similar to E74-like factor 1 (ets do... 88 2e-17
>ref|XP_540546.2| PREDICTED: similar to ets homologous factor isoform 1 [Canis
familiaris].
Length = 300
Score = 581 bits (1497), Expect = e-166
Identities = 271/297 (91%), Positives = 285/297 (95%), Gaps = 1/297 (0%)
Frame = +3
Query: 165 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 344
MILEGSGVMNLNPSNNLLHQ PAWTD Y TC+VSSGFFGGQWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGSGVMNLNPSNNLLHQQPAWTDGYSTCSVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 60
Query: 345 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 524
HLLDTNQLDASCIPFQEFD+NGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDASCIPFQEFDVNGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 120
Query: 525 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 704
LFQSTHNVIVKTEQ+DP+IMN+WKEENYL+D NYGSTVDLLDSKTFCRAQISMT+TGHLP
Sbjct: 121 LFQSTHNVIVKTEQSDPSIMNTWKEENYLYDTNYGSTVDLLDSKTFCRAQISMTSTGHLP 180
Query: 705 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 884
VAESP+MKKEQ+HP KSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL
Sbjct: 181 VAESPEMKKEQEHPAKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 240
Query: 885 KSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
KSEAVAQLWG+KKNN+SMTYEKLSRAMRYYYKREILERVDGR ++ARGWR+
Sbjct: 241 KSEAVAQLWGKKKNNNSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRE 297
>ref|XP_857258.1| PREDICTED: similar to ets homologous factor isoform 2 [Canis
familiaris].
Length = 277
Score = 523 bits (1347), Expect = e-148
Identities = 249/297 (83%), Positives = 262/297 (88%), Gaps = 1/297 (0%)
Frame = +3
Query: 165 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 344
MILEGSGVMNLNPSNNLLHQ PAWTD Y TC+VSSGFFGGQWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGSGVMNLNPSNNLLHQQPAWTDGYSTCSVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 60
Query: 345 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 524
HLLDTNQLDASCIPFQEFD+NGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDASCIPFQEFDVNGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 120
Query: 525 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 704
LFQSTHNVIVKTEQ+DP+IMN+WKEENYL+D NYGST
Sbjct: 121 LFQSTHNVIVKTEQSDPSIMNTWKEENYLYDTNYGST----------------------- 157
Query: 705 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 884
VAESP+MKKEQ+HP KSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL
Sbjct: 158 VAESPEMKKEQEHPAKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 217
Query: 885 KSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
KSEAVAQLWG+KKNN+SMTYEKLSRAMRYYYKREILERVDGR ++ARGWR+
Sbjct: 218 KSEAVAQLWGKKKNNNSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRE 274
>ref|XP_851152.1| PREDICTED: similar to E74-like factor 5 ESE-2a [Canis familiaris].
Length = 298
Score = 194 bits (492), Expect = 2e-49
Identities = 110/291 (37%), Positives = 155/291 (53%), Gaps = 5/291 (1%)
Frame = +3
Query: 201 PSNNLLHQPPAWTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQ 365
P+ + +WTD + F W +HP+YWTK VWEWLQ D +
Sbjct: 55 PNTSFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQYK 114
Query: 366 LDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHN 545
LDA+CI F F+++G LCSM+ +EF AAG G+ LY LQ+++ G ++
Sbjct: 115 LDANCISFCHFNVSGLQLCSMTQEEFVEAAGICGEYLYFILQNIRSQG----------YS 164
Query: 546 VIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDM 725
TE+T I D DS + I
Sbjct: 165 FFTDTEETKAAIK------------------DYADSNCLKTSGI---------------- 190
Query: 726 KKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQ 905
K QD ++S T + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A+
Sbjct: 191 -KSQDCHSQSRTSLQS---SHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAK 246
Query: 906 LWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLEDARGWRKMK 1058
+WG++K N MTYEKLSRA+RYYYK ILERVD R Y ++A GW++ K
Sbjct: 247 MWGQRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEDK 297
>ref|XP_547356.2| PREDICTED: similar to E74-like factor 3 (ets domain transcription
factor, epithelial-specific ) [Canis familiaris].
Length = 475
Score = 181 bits (460), Expect = 8e-46
Identities = 114/303 (37%), Positives = 151/303 (49%), Gaps = 48/303 (15%)
Frame = +3
Query: 288 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG 467
W PQ W+K QV +W+ + ++ N+ DAS I F D++G LC+ + +E G G
Sbjct: 165 WSGKQPQLWSKAQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCAPEELRLVFGPLG 224
Query: 468 QLLYSNL--------QHLKWNGQC---SSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLF 614
LYS L L W + S FQ + + ++ ++ F
Sbjct: 225 DQLYSQLWDLTASFPDELSWIIELLEKDSMAFQESLGPFDQGSPFSQEMLEESRQAGPYF 284
Query: 615 DPNYG-----------------------------STVDL--LDSKTFCRAQISMTTTGHL 701
+YG S VDL DSK F R G
Sbjct: 285 PGSYGPGALSPGSSDVSTAGTATSQSPHSSDSGGSDVDLDPTDSKLFSRDGFPDYKKGDP 344
Query: 702 PVAESP-----DMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSE 866
+ + KE + KH PRGTHLWEFIRDIL++P+ N GL+KWE+R E
Sbjct: 345 KHGKRKRGRPRKLSKESRECLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRQE 404
Query: 867 GIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARG 1043
G+F+FL+SEAVAQLWG+KK NSSMTYEKLSRAMRYYYKR ILERVDGR +++ G
Sbjct: 405 GVFKFLRSEAVAQLWGQKKKNSSMTYEKLSRAMRYYYKRGILERVDGRRLVYKFGKNSSG 464
Query: 1044 WRK 1052
W++
Sbjct: 465 WKE 467
>ref|XP_857025.1| PREDICTED: similar to Friend leukemia integration 1 transcription
factor (Fli-1 proto-oncogene) (ERGB transcription factor)
isoform 2 [Canis familiaris].
Length = 454
Score = 91.7 bits (226), Expect = 1e-18
Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 7/243 (2%)
Frame = +3
Query: 303 PQYWTKYQVWEWLQHLL-DTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG-QLL 476
P WT+ V +WL+ + + ++ FQ D G+ LC M+ ++F RA ++L
Sbjct: 131 PTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMD--GKELCKMNKEDFLRATSLYNTEVL 188
Query: 477 YSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSK 656
S+L +L+ +CS + +T + TD + S KE DP+Y S +
Sbjct: 189 LSHLSYLR-ESKCSLLAYNTTSH-------TDQSSRLSVKE-----DPSYDSVRRGWGNN 235
Query: 657 TFCRAQISMTTTGHLPVAESPDMKKEQDH-----PTKSHTKKHNPRGTHLWEFIRDILLN 821
S G ++++ + + + D PT S LW+F+ + LL+
Sbjct: 236 VNSGLNKSPPLAGAQAMSKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLE-LLS 294
Query: 822 PDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERV 1001
N I WE + G F+ + VA+ WGE+K+ +M Y+KLSRA+RYYY + I+ +V
Sbjct: 295 DSANASCITWEG-TNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKV 353
Query: 1002 DGR 1010
G+
Sbjct: 354 HGK 356
>ref|XP_546404.2| PREDICTED: similar to Friend leukemia integration 1 transcription
factor (Fli-1 proto-oncogene) (ERGB transcription factor)
isoform 1 [Canis familiaris].
Length = 451
Score = 89.7 bits (221), Expect = 4e-18
Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 7/243 (2%)
Frame = +3
Query: 303 PQYWTKYQVWEWLQHLL-DTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG-QLL 476
P WT+ V +WL+ + + ++ FQ D G+ LC M+ ++F RA ++L
Sbjct: 130 PTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMD--GKELCKMNKEDFLRATSLYNTEVL 187
Query: 477 YSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSK 656
S+L +L+ SS L +T T TD + S KE DP+Y S +
Sbjct: 188 LSHLSYLRE----SSLLAYNT------TSHTDQSSRLSVKE-----DPSYDSVRRGWGNN 232
Query: 657 TFCRAQISMTTTGHLPVAESPDMKKEQDH-----PTKSHTKKHNPRGTHLWEFIRDILLN 821
S G ++++ + + + D PT S LW+F+ + LL+
Sbjct: 233 VNSGLNKSPPLAGAQAMSKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLE-LLS 291
Query: 822 PDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERV 1001
N I WE + G F+ + VA+ WGE+K+ +M Y+KLSRA+RYYY + I+ +V
Sbjct: 292 DSANASCITWEG-TNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKV 350
Query: 1002 DGR 1010
G+
Sbjct: 351 HGK 353
>ref|XP_533288.2| PREDICTED: similar to ETS-related transcription factor Elf-2
(E74-like factor 2) (New ETS-related factor) isoform 1
[Canis familiaris].
Length = 592
Score = 88.2 bits (217), Expect = 1e-17
Identities = 41/108 (37%), Positives = 64/108 (59%)
Frame = +3
Query: 711 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 890
+SP + K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 184 QSPISNGSPELGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 243
Query: 891 EAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLED 1034
+AV++LWG+ KN M YE + RA+RYYY+R IL +V+G+ +D
Sbjct: 244 KAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKD 291
>ref|XP_856018.1| PREDICTED: similar to E74-like factor 2 (ets domain transcription
factor) isoform 1 isoform 4 [Canis familiaris].
Length = 580
Score = 88.2 bits (217), Expect = 1e-17
Identities = 41/108 (37%), Positives = 64/108 (59%)
Frame = +3
Query: 711 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 890
+SP + K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 172 QSPISNGSPELGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 231
Query: 891 EAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLED 1034
+AV++LWG+ KN M YE + RA+RYYY+R IL +V+G+ +D
Sbjct: 232 KAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKD 279
>ref|XP_855980.1| PREDICTED: similar to E74-like factor 2 (ets domain transcription
factor) isoform 1 isoform 3 [Canis familiaris].
Length = 580
Score = 88.2 bits (217), Expect = 1e-17
Identities = 41/108 (37%), Positives = 64/108 (59%)
Frame = +3
Query: 711 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 890
+SP + K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 172 QSPISNGSPELGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 231
Query: 891 EAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLED 1034
+AV++LWG+ KN M YE + RA+RYYY+R IL +V+G+ +D
Sbjct: 232 KAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKD 279
>ref|XP_857052.1| PREDICTED: similar to E74-like factor 1 (ets domain transcription
factor) isoform 4 [Canis familiaris].
Length = 583
Score = 87.8 bits (216), Expect = 2e-17
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Frame = +3
Query: 567 TDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDMKKEQ--- 737
TD I +S E++ + P +V L Q T H P A SP+ K +
Sbjct: 84 TDNNIFSS-SEDDIVVAPITHVSVTLDGIPEVMETQQVQETYAHSPGASSPEQPKRKKGR 142
Query: 738 -------DHPTKS---HTKKHNPRGT----HLWEFIRDILLNPDKNPGLIKWEDRSEGIF 875
D P + KK N G +LWEF+ +L + P IKW R +GIF
Sbjct: 143 KTKPPRPDSPATTPNISVKKKNKDGKGNTIYLWEFLLALLQDKATCPKYIKWTQREKGIF 202
Query: 876 RFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGR 1010
+ + S+AV++LWG+ KN M YE + RA+RYYY+R IL +V+G+
Sbjct: 203 KLVDSKAVSRLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQ 247
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,484,107
Number of extensions: 1091722
Number of successful extensions: 3408
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 3398
Number of HSP's successfully gapped: 51
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007685
(1063 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031940.1| ETS homologous factor [Mus musculus]. 582 e-166
Alignment gi|NP_001156603.1| ETS-related transcription factor Elf-3 isofo... 188 5e-48
Alignment gi|NP_031947.1| ETS-related transcription factor Elf-3 isoform ... 188 7e-48
Alignment gi|NP_001139285.1| ETS-related transcription factor Elf-5 [Mus ... 188 7e-48
Alignment gi|NP_034255.2| ETS-related transcription factor Elf-5 [Mus mus... 188 7e-48
Alignment gi|NP_075991.1| ETS-related transcription factor Elf-2 [Mus mus... 89 8e-18
Alignment gi|NP_031946.1| ETS-related transcription factor Elf-1 [Mus mus... 86 4e-17
Alignment gi|NP_032052.1| Friend leukemia integration 1 transcription fac... 86 6e-17
Alignment gi|NP_062654.2| ETS-related transcription factor Elf-4 [Mus mus... 84 2e-16
Alignment gi|NP_038919.1| SAM pointed domain-containing Ets transcription... 82 5e-16
>ref|NP_031940.1| ETS homologous factor [Mus musculus].
Length = 300
Score = 582 bits (1499), Expect = e-166
Identities = 272/297 (91%), Positives = 285/297 (95%), Gaps = 1/297 (0%)
Frame = +3
Query: 165 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 344
MILEGSGVMNLNP+NNLLHQ PAWTDSYPTCNVSSGFFG QWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGSGVMNLNPANNLLHQQPAWTDSYPTCNVSSGFFGSQWHEIHPQYWTKYQVWEWLQ 60
Query: 345 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 524
HLLDTNQLDASCIPFQEFDI+GEHLCSMSLQEFTRAAG+AGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDASCIPFQEFDISGEHLCSMSLQEFTRAAGSAGQLLYSNLQHLKWNGQCSSD 120
Query: 525 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 704
LFQS HNVIVKTEQTDP+IMN+WKEENYL+DP+YGSTVDLLDSKTFCRAQISMTT+ HLP
Sbjct: 121 LFQSAHNVIVKTEQTDPSIMNTWKEENYLYDPSYGSTVDLLDSKTFCRAQISMTTSSHLP 180
Query: 705 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 884
VAESPDMKKEQDHP KSHTKKHNPRGTHLWEFIRDILL+PDKNPGLIKWEDRSEGIFRFL
Sbjct: 181 VAESPDMKKEQDHPVKSHTKKHNPRGTHLWEFIRDILLSPDKNPGLIKWEDRSEGIFRFL 240
Query: 885 KSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
KSEAVAQLWG+KKNNSSMTYEKLSRAMRYYYKREILERVDGR ++ARGWR+
Sbjct: 241 KSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRE 297
>ref|NP_001156603.1| ETS-related transcription factor Elf-3 isoform 1 [Mus musculus].
Length = 391
Score = 188 bits (478), Expect = 5e-48
Identities = 128/363 (35%), Positives = 182/363 (50%), Gaps = 56/363 (15%)
Frame = +3
Query: 132 FATQNL*V---NEIMILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIH 302
F T++L + N+ M LEG G + + TD +++ W
Sbjct: 34 FGTEDLVLTLNNQQMTLEGPGPQTRSQRDR--------TDPLAVLHLAEK---ASWTSER 82
Query: 303 PQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYS 482
PQ+W+K QV EW+ + ++ N+ DAS I F D++G LCS +L+E G G L++
Sbjct: 83 PQFWSKTQVLEWISYQVEKNKYDASSIDFSRCDMDGATLCSCALEELRLVFGPLGDQLHA 142
Query: 483 NLQHLKWNGQCSSDL-------------FQSTHNVIVKTEQTDP---TIMNSWKEENYLF 614
L+ L N S +L FQ + +Q P +++ ++ + +
Sbjct: 143 QLRDLTSNS--SDELSWIIELLEKDGMSFQESLGDSGPFDQGSPFAQELLDDGRQASPYY 200
Query: 615 DPNYGSTVDLLDSKTFCRAQISMTTTGH----------LPVAES--------PDMKK--- 731
YG S A+ + + H L + ES PD KK
Sbjct: 201 CSTYGPGAPSPGSSDVSTARTATPQSSHASDSGGSDVDLDLTESKVFPRDGFPDYKKGEP 260
Query: 732 -----EQDHPTK----------SHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSE 866
++ P K KH PRGTHLWEFIRDIL++P+ N GL+KWE+R E
Sbjct: 261 KHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHE 320
Query: 867 GIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARG 1043
G+F+FL+SEAVAQLWG+KK NS+MTYEKLSRAMRYYYKREILERVDGR +++ G
Sbjct: 321 GVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSSG 380
Query: 1044 WRK 1052
W++
Sbjct: 381 WKE 383
>ref|NP_031947.1| ETS-related transcription factor Elf-3 isoform 2 [Mus musculus].
Length = 371
Score = 188 bits (477), Expect = 7e-48
Identities = 117/308 (37%), Positives = 162/308 (52%), Gaps = 53/308 (17%)
Frame = +3
Query: 288 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG 467
W PQ+W+K QV EW+ + ++ N+ DAS I F D++G LCS +L+E G G
Sbjct: 58 WTSERPQFWSKTQVLEWISYQVEKNKYDASSIDFSRCDMDGATLCSCALEELRLVFGPLG 117
Query: 468 QLLYSNLQHLKWNGQCSSDL-------------FQSTHNVIVKTEQTDP---TIMNSWKE 599
L++ L+ L N S +L FQ + +Q P +++ ++
Sbjct: 118 DQLHAQLRDLTSNS--SDELSWIIELLEKDGMSFQESLGDSGPFDQGSPFAQELLDDGRQ 175
Query: 600 ENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGH----------LPVAES--------PDM 725
+ + YG S A+ + + H L + ES PD
Sbjct: 176 ASPYYCSTYGPGAPSPGSSDVSTARTATPQSSHASDSGGSDVDLDLTESKVFPRDGFPDY 235
Query: 726 KK--------EQDHPTK----------SHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKW 851
KK ++ P K KH PRGTHLWEFIRDIL++P+ N GL+KW
Sbjct: 236 KKGEPKHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKW 295
Query: 852 EDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL- 1028
E+R EG+F+FL+SEAVAQLWG+KK NS+MTYEKLSRAMRYYYKREILERVDGR
Sbjct: 296 ENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFG 355
Query: 1029 EDARGWRK 1052
+++ GW++
Sbjct: 356 KNSSGWKE 363
>ref|NP_001139285.1| ETS-related transcription factor Elf-5 [Mus musculus].
Length = 253
Score = 188 bits (477), Expect = 7e-48
Identities = 106/280 (37%), Positives = 149/280 (53%), Gaps = 5/280 (1%)
Frame = +3
Query: 234 WTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEF 398
WTD + + F W +HP+YWTK VWEWLQ D +LDA+CI F F
Sbjct: 23 WTDLFSNEDYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHF 82
Query: 399 DINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPT 578
+I+G LCSM+ +EF AAG G+ LY LQ+++ G +
Sbjct: 83 NISGLQLCSMTQEEFIEAAGICGEYLYFILQNIRSQGY---------------------S 121
Query: 579 IMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDMKKEQDHPTKSH 758
N +E T TG A+S +K H
Sbjct: 122 FFNDAEE----------------------------TKTGIKDYADSSCLKTSGIKSQDCH 153
Query: 759 TKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSM 938
++ + + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A++WG++K N M
Sbjct: 154 SRT-SLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRM 212
Query: 939 TYEKLSRAMRYYYKREILERVDGRDWYINLEDARGWRKMK 1058
TYEKLSRA+RYYYK ILERVD R Y ++A GW++ K
Sbjct: 213 TYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEEK 252
>ref|NP_034255.2| ETS-related transcription factor Elf-5 [Mus musculus].
Length = 253
Score = 188 bits (477), Expect = 7e-48
Identities = 106/280 (37%), Positives = 149/280 (53%), Gaps = 5/280 (1%)
Frame = +3
Query: 234 WTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEF 398
WTD + + F W +HP+YWTK VWEWLQ D +LDA+CI F F
Sbjct: 23 WTDLFSNEDYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHF 82
Query: 399 DINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPT 578
+I+G LCSM+ +EF AAG G+ LY LQ+++ G +
Sbjct: 83 NISGLQLCSMTQEEFIEAAGICGEYLYFILQNIRSQGY---------------------S 121
Query: 579 IMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDMKKEQDHPTKSH 758
N +E T TG A+S +K H
Sbjct: 122 FFNDAEE----------------------------TKTGIKDYADSSCLKTSGIKSQDCH 153
Query: 759 TKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSM 938
++ + + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A++WG++K N M
Sbjct: 154 SRT-SLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRM 212
Query: 939 TYEKLSRAMRYYYKREILERVDGRDWYINLEDARGWRKMK 1058
TYEKLSRA+RYYYK ILERVD R Y ++A GW++ K
Sbjct: 213 TYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEEK 252
>ref|NP_075991.1| ETS-related transcription factor Elf-2 [Mus musculus].
Length = 593
Score = 88.6 bits (218), Expect = 8e-18
Identities = 41/108 (37%), Positives = 64/108 (59%)
Frame = +3
Query: 711 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 890
+SP + K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 184 QSPVSNGSPELGIKKKAREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 243
Query: 891 EAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLED 1034
+AV++LWG+ KN M YE + RA+RYYY+R IL +V+G+ +D
Sbjct: 244 KAVSKLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKD 291
>ref|NP_031946.1| ETS-related transcription factor Elf-1 [Mus musculus].
Length = 612
Score = 86.3 bits (212), Expect = 4e-17
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 17/125 (13%)
Frame = +3
Query: 687 TTGHLPVAESPDMKKEQ----------DHPTKS---HTKKHNPRGT----HLWEFIRDIL 815
T P A SP+ +K + D PT + KK N G +LWEF+ +L
Sbjct: 159 TNADSPGASSPEQRKRKKGRKTKPPRPDSPTTTPNISVKKKNKDGKGNTIYLWEFLLALL 218
Query: 816 LNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILE 995
+ P IKW R +GIF+ + S+AV++LWG+ KN M YE + RA+RYYY+R IL
Sbjct: 219 QDKATCPKYIKWTQREKGIFKLVDSKAVSRLWGKHKNKPDMNYETMGRALRYYYQRGILA 278
Query: 996 RVDGR 1010
+V+G+
Sbjct: 279 KVEGQ 283
>ref|NP_032052.1| Friend leukemia integration 1 transcription factor [Mus musculus].
Length = 452
Score = 85.5 bits (210), Expect = 6e-17
Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 8/244 (3%)
Frame = +3
Query: 303 PQYWTKYQVWEWLQHLL-DTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG-QLL 476
P WT+ V +WL+ + + ++ FQ D G+ LC M+ ++F RA ++L
Sbjct: 130 PTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMD--GKELCKMNKEDFLRATSAYNTEVL 187
Query: 477 YSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTV-DLLDS 653
S+L +L+ SS L +T T TD + + KE DP+Y S ++
Sbjct: 188 LSHLSYLRE----SSLLAYNT------TSHTDQSSRLNVKE-----DPSYDSVRRGAWNN 232
Query: 654 KTFCRAQISMTTTGHLPVAESPDMKKEQDH-----PTKSHTKKHNPRGTHLWEFIRDILL 818
S G + ++ + + + D PT S LW+F+ + LL
Sbjct: 233 NMNSGLNKSPLLGGSQTMGKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLE-LL 291
Query: 819 NPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILER 998
+ N I WE + G F+ + VA+ WGE+K+ +M Y+KLSRA+RYYY + I+ +
Sbjct: 292 SDSANASCITWEG-TNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTK 350
Query: 999 VDGR 1010
V G+
Sbjct: 351 VHGK 354
>ref|NP_062654.2| ETS-related transcription factor Elf-4 [Mus musculus].
Length = 655
Score = 84.0 bits (206), Expect = 2e-16
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +3
Query: 744 PTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKK 923
P + +K +LWEF+ +L + + P IKW R +GIF+ + S+AV++LWG++K
Sbjct: 195 PIRKKSKDGKGSTIYLWEFLLALLQDRNTCPKYIKWTQREKGIFKLVDSKAVSKLWGKQK 254
Query: 924 NNSSMTYEKLSRAMRYYYKREILERVDGR 1010
N M YE + RA+RYYY+R IL +V+G+
Sbjct: 255 NKPDMNYETMGRALRYYYQRGILAKVEGQ 283
>ref|NP_038919.1| SAM pointed domain-containing Ets transcription factor [Mus
musculus].
Length = 325
Score = 82.4 bits (202), Expect = 5e-16
Identities = 61/234 (26%), Positives = 103/234 (44%)
Frame = +3
Query: 303 PQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYS 482
P W+ V +WL +L + FQE + G+ LC+MS ++F + A G +L++
Sbjct: 137 PGDWSPGNVQKWLLWTEHQYRLPPAGKAFQE--LGGKELCAMSEEQFRQRAPLGGDVLHA 194
Query: 483 NLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTF 662
+L D+++S +W +E
Sbjct: 195 HL-----------DIWKSA----------------AWMKER------------------- 208
Query: 663 CRAQISMTTTGHLPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGL 842
T+ G L S + D S + + HLW+F++++LL P
Sbjct: 209 -------TSPGTLHYCASTSEEGWTDGEVDSSC---SGQPIHLWQFLKELLLKPHSYGRF 258
Query: 843 IKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVD 1004
I+W ++ +GIF+ S VA+LWG +KN +M Y+KLSR++R YYK+ I+ + D
Sbjct: 259 IRWLNKEKGIFKIEDSAQVARLWGVRKNRPAMNYDKLSRSIRQYYKKGIIRKPD 312
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,690,231
Number of extensions: 913827
Number of successful extensions: 2666
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 2648
Number of HSP's successfully gapped: 38
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007685
(1063 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122919.1| PREDICTED: ETS homologous factor-like isofor... 610 e-175
Alignment gi|XP_003353956.1| PREDICTED: ETS homologous factor-like isofor... 607 e-174
Alignment gi|NP_001230640.1| ETS-related transcription factor Elf-5 [Sus ... 190 1e-48
Alignment gi|XP_003130654.2| PREDICTED: ETS-related transcription factor ... 154 6e-38
Alignment gi|XP_003131046.2| PREDICTED: ETS-related transcription factor ... 86 5e-17
Alignment gi|XP_003135417.1| PREDICTED: ETS-related transcription factor ... 84 1e-16
Alignment gi|XP_003359008.1| PREDICTED: transcriptional regulator ERG-lik... 81 1e-15
Alignment gi|NP_001177183.1| SAM pointed domain-containing Ets transcript... 77 2e-14
Alignment gi|XP_003355727.1| PREDICTED: ETS domain-containing protein Elk... 74 1e-13
Alignment gi|XP_003135100.1| PREDICTED: ETS domain-containing protein Elk... 74 2e-13
>ref|XP_003122919.1| PREDICTED: ETS homologous factor-like isoform 1 [Sus scrofa].
Length = 309
Score = 610 bits (1574), Expect = e-175
Identities = 288/299 (96%), Positives = 292/299 (97%), Gaps = 1/299 (0%)
Frame = +3
Query: 159 EIMILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEW 338
EIMILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEW
Sbjct: 8 EIMILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEW 67
Query: 339 LQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCS 518
LQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCS
Sbjct: 68 LQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCS 127
Query: 519 SDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGH 698
SDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGH
Sbjct: 128 SDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGH 187
Query: 699 LPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFR 878
LPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFR
Sbjct: 188 LPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFR 247
Query: 879 FLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
FLKSEAVAQLWG+KKNNSSMTYEKLSRAMRYYYKREILERVDGR ++ARGWR+
Sbjct: 248 FLKSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRE 306
>ref|XP_003353956.1| PREDICTED: ETS homologous factor-like isoform 2 [Sus scrofa].
Length = 300
Score = 607 bits (1565), Expect = e-174
Identities = 286/297 (96%), Positives = 290/297 (97%), Gaps = 1/297 (0%)
Frame = +3
Query: 165 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 344
MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 60
Query: 345 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 524
HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 120
Query: 525 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 704
LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP
Sbjct: 121 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 180
Query: 705 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 884
VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL
Sbjct: 181 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 240
Query: 885 KSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
KSEAVAQLWG+KKNNSSMTYEKLSRAMRYYYKREILERVDGR ++ARGWR+
Sbjct: 241 KSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRE 297
>ref|NP_001230640.1| ETS-related transcription factor Elf-5 [Sus scrofa].
Length = 255
Score = 190 bits (483), Expect = 1e-48
Identities = 111/291 (38%), Positives = 153/291 (52%), Gaps = 5/291 (1%)
Frame = +3
Query: 201 PSNNLLHQPPAWTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQ 365
P+ N +WTD + + F W +HP+YWTK VWEWLQ D +
Sbjct: 12 PNANFCDPLMSWTDLFSSEEYYPAFEHQTACDPYWTSVHPEYWTKRHVWEWLQFCCDQYK 71
Query: 366 LDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHN 545
LDA+CI F F+I+G LCSM+ +EF AAG G+ LY LQ+++ G ++
Sbjct: 72 LDANCISFCHFNISGLQLCSMTQEEFIEAAGICGEYLYFILQNIRSQG----------YS 121
Query: 546 VIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDM 725
E+T I D DS + I
Sbjct: 122 FFNDAEETKAAIK------------------DYADSSCLKTSGI---------------- 147
Query: 726 KKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQ 905
K QD S T + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A+
Sbjct: 148 -KSQDCHNHSRTSLQS---SHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAK 203
Query: 906 LWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLEDARGWRKMK 1058
+WG++K N MTYEKLSRA+RYYYK ILERVD R Y ++A GW++ K
Sbjct: 204 MWGQRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEDK 254
>ref|XP_003130654.2| PREDICTED: ETS-related transcription factor Elf-3-like [Sus scrofa].
Length = 303
Score = 154 bits (390), Expect = 6e-38
Identities = 73/111 (65%), Positives = 88/111 (79%), Gaps = 1/111 (0%)
Frame = +3
Query: 723 MKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVA 902
+ KE + KH PRGTHLWEFIRDIL+NP+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 185 LSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRQEGVFKFLRSEAVA 244
Query: 903 QLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
QLWG+KK NSSMTYEKLSRAMRYYYKREILERVDGR +++ GW++
Sbjct: 245 QLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSSGWQE 295
>ref|XP_003131046.2| PREDICTED: ETS-related transcription factor Elf-1 isoform 1 [Sus
scrofa].
Length = 503
Score = 85.5 bits (210), Expect = 5e-17
Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 17/173 (9%)
Frame = +3
Query: 567 TDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDM-KKEQDH 743
TD I +S E+ + P +V L Q T H P SP+ KK++
Sbjct: 7 TDNNIFSS--SEDDVIAPITHVSVTLDGIPEVMETQQVQETFAHSPGPSSPEQPKKKKGR 64
Query: 744 PTKS------------HTKKHNPRGT----HLWEFIRDILLNPDKNPGLIKWEDRSEGIF 875
TK KK N G +LWEF+ +L + P IKW R +GIF
Sbjct: 65 KTKPPRPDSPATTPNISVKKKNKDGKGNTIYLWEFLLALLQDKATCPKYIKWTQREKGIF 124
Query: 876 RFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLED 1034
+ + S+AV++LWG+ KN M YE + RA+RYYY+R IL +V+G+ +D
Sbjct: 125 KLVDSKAVSRLWGKHKNKPDMNYETMGRALRYYYQRGILAKVEGQRLVYQFKD 177
>ref|XP_003135417.1| PREDICTED: ETS-related transcription factor Elf-4 [Sus scrofa].
Length = 662
Score = 84.0 bits (206), Expect = 1e-16
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +3
Query: 744 PTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKK 923
P + +K +LWEF+ +L + + P IKW R +GIF+ + S+AV++LWG++K
Sbjct: 195 PIRKKSKDGKGSTIYLWEFLLALLQDRNTCPKYIKWTQREKGIFKLVDSKAVSKLWGKQK 254
Query: 924 NNSSMTYEKLSRAMRYYYKREILERVDGR 1010
N M YE + RA+RYYY+R IL +V+G+
Sbjct: 255 NKPDMNYETMGRALRYYYQRGILAKVEGQ 283
>ref|XP_003359008.1| PREDICTED: transcriptional regulator ERG-like [Sus scrofa].
Length = 575
Score = 80.9 bits (198), Expect = 1e-15
Identities = 71/264 (26%), Positives = 113/264 (42%), Gaps = 28/264 (10%)
Frame = +3
Query: 303 PQYWTKYQVWEWLQHLLDTNQL-DASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG-QLL 476
P W+ V +WL+ + L D + FQ D G+ LC M+ +F R + +L
Sbjct: 227 PTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNID--GKELCKMTKDDFQRLTPSYNADIL 284
Query: 477 YSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSK 656
S+L +L+ + L T + + K Q P +M++ F S +
Sbjct: 285 LSHLHYLR-----ETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEATQR 339
Query: 657 TFCRAQI--------SMTTTGHLPVAESP-------DMKKEQDH-----------PTKSH 758
R + + T+ GH P +S M K +D PT S
Sbjct: 340 ITTRPDLPYEAPRRSAWTSHGH-PTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSSR 398
Query: 759 TKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSM 938
LW+F+ + LL+ N I WE + G F+ + VA+ WGE+K+ +M
Sbjct: 399 LANPGSGQIQLWQFLLE-LLSDSSNSSCITWEG-TNGEFKMTDPDEVARRWGERKSKPNM 456
Query: 939 TYEKLSRAMRYYYKREILERVDGR 1010
Y+KLSRA+RYYY + I+ +V G+
Sbjct: 457 NYDKLSRALRYYYDKNIMTKVHGK 480
>ref|NP_001177183.1| SAM pointed domain-containing Ets transcription factor [Sus scrofa].
Length = 335
Score = 76.6 bits (187), Expect = 2e-14
Identities = 31/73 (42%), Positives = 51/73 (69%)
Frame = +3
Query: 786 HLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAM 965
HLW+F++++LL P I+W ++ +GIF+ S VA+LWG +KN +M Y+KLSR++
Sbjct: 250 HLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSI 309
Query: 966 RYYYKREILERVD 1004
R YY++ I+ + D
Sbjct: 310 RQYYRKGIIRKPD 322
>ref|XP_003355727.1| PREDICTED: ETS domain-containing protein Elk-3 [Sus scrofa].
Length = 401
Score = 73.9 bits (180), Expect = 1e-13
Identities = 35/74 (47%), Positives = 55/74 (74%)
Frame = +3
Query: 789 LWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMR 968
LW+F+ +LL+ K+ LI W ++G F+ LK+E VA+LWG +KN ++M Y+KLSRA+R
Sbjct: 7 LWQFLLQLLLD-QKHEHLICWTS-NDGEFKLLKAEEVAKLWGLRKNKTNMNYDKLSRALR 64
Query: 969 YYYKREILERVDGR 1010
YYY + I+++V G+
Sbjct: 65 YYYDKNIIKKVIGQ 78
>ref|XP_003135100.1| PREDICTED: ETS domain-containing protein Elk-1 isoform 2 [Sus
scrofa].
Length = 443
Score = 73.6 bits (179), Expect = 2e-13
Identities = 33/74 (44%), Positives = 49/74 (66%)
Frame = +3
Query: 789 LWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMR 968
LW+F+ LL N +I W R G F+ + +E VA+LWG +KN ++M Y+KLSRA+R
Sbjct: 7 LWQFLLQ-LLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALR 65
Query: 969 YYYKREILERVDGR 1010
YYY + I+ +V G+
Sbjct: 66 YYYDKNIIRKVSGQ 79
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,547,488
Number of extensions: 675007
Number of successful extensions: 1868
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 1862
Number of HSP's successfully gapped: 25
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007685
(1063 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193545.1| ETS homologous factor isoform 1 [Homo sapien... 582 e-166
Alignment gi|NP_036285.2| ETS homologous factor isoform 2 [Homo sapiens]. 580 e-165
Alignment gi|NP_001193544.1| ETS homologous factor isoform 3 [Homo sapien... 523 e-148
Alignment gi|NP_001413.1| ETS-related transcription factor Elf-5 isoform ... 189 4e-48
Alignment gi|NP_938195.1| ETS-related transcription factor Elf-5 isoform ... 189 4e-48
Alignment gi|NP_001107781.1| ETS-related transcription factor Elf-3 [Homo... 151 1e-36
Alignment gi|NP_004424.3| ETS-related transcription factor Elf-3 [Homo sa... 151 1e-36
Alignment gi|NP_001230010.1| ETS-related transcription factor Elf-5 isofo... 127 2e-29
Alignment gi|NP_001230009.1| ETS-related transcription factor Elf-5 isofo... 127 2e-29
Alignment gi|NP_001193964.1| transcription factor ETV7 isoform 2 [Homo sa... 98 1e-20
>ref|NP_001193545.1| ETS homologous factor isoform 1 [Homo sapiens].
Length = 322
Score = 582 bits (1499), Expect = e-166
Identities = 272/299 (90%), Positives = 284/299 (94%), Gaps = 1/299 (0%)
Frame = +3
Query: 159 EIMILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEW 338
+IMILEG GVMNLNP NNLLHQPPAWTDSY TCNVSSGFFGGQWHEIHPQYWTKYQVWEW
Sbjct: 21 KIMILEGGGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGFFGGQWHEIHPQYWTKYQVWEW 80
Query: 339 LQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCS 518
LQHLLDTNQLDA+CIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCS
Sbjct: 81 LQHLLDTNQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCS 140
Query: 519 SDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGH 698
SDLFQSTHNVIVKTEQT+P+IMN+WK+ENYL+D NYGSTVDLLDSKTFCRAQISMTTT H
Sbjct: 141 SDLFQSTHNVIVKTEQTEPSIMNTWKDENYLYDTNYGSTVDLLDSKTFCRAQISMTTTSH 200
Query: 699 LPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFR 878
LPVAESPDMKKEQD P K HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEG+FR
Sbjct: 201 LPVAESPDMKKEQDPPAKCHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFR 260
Query: 879 FLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
FLKSEAVAQLWG+KKNNSSMTYEKLSRAMRYYYKREILERVDGR ++ARGWR+
Sbjct: 261 FLKSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRE 319
>ref|NP_036285.2| ETS homologous factor isoform 2 [Homo sapiens].
Length = 300
Score = 580 bits (1494), Expect = e-165
Identities = 271/297 (91%), Positives = 282/297 (94%), Gaps = 1/297 (0%)
Frame = +3
Query: 165 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 344
MILEG GVMNLNP NNLLHQPPAWTDSY TCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGGGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 60
Query: 345 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 524
HLLDTNQLDA+CIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 120
Query: 525 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 704
LFQSTHNVIVKTEQT+P+IMN+WK+ENYL+D NYGSTVDLLDSKTFCRAQISMTTT HLP
Sbjct: 121 LFQSTHNVIVKTEQTEPSIMNTWKDENYLYDTNYGSTVDLLDSKTFCRAQISMTTTSHLP 180
Query: 705 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 884
VAESPDMKKEQD P K HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEG+FRFL
Sbjct: 181 VAESPDMKKEQDPPAKCHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFL 240
Query: 885 KSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
KSEAVAQLWG+KKNNSSMTYEKLSRAMRYYYKREILERVDGR ++ARGWR+
Sbjct: 241 KSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRE 297
>ref|NP_001193544.1| ETS homologous factor isoform 3 [Homo sapiens].
Length = 277
Score = 523 bits (1346), Expect = e-148
Identities = 249/297 (83%), Positives = 260/297 (87%), Gaps = 1/297 (0%)
Frame = +3
Query: 165 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 344
MILEG GVMNLNP NNLLHQPPAWTDSY TCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGGGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 60
Query: 345 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 524
HLLDTNQLDA+CIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 120
Query: 525 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 704
LFQSTHNVIVKTEQT+P+IMN+WK+ENYL+D NYGST
Sbjct: 121 LFQSTHNVIVKTEQTEPSIMNTWKDENYLYDTNYGST----------------------- 157
Query: 705 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 884
VAESPDMKKEQD P K HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEG+FRFL
Sbjct: 158 VAESPDMKKEQDPPAKCHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFL 217
Query: 885 KSEAVAQLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
KSEAVAQLWG+KKNNSSMTYEKLSRAMRYYYKREILERVDGR ++ARGWR+
Sbjct: 218 KSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRE 274
>ref|NP_001413.1| ETS-related transcription factor Elf-5 isoform 2 [Homo sapiens].
Length = 255
Score = 189 bits (480), Expect = 4e-48
Identities = 108/281 (38%), Positives = 150/281 (53%), Gaps = 5/281 (1%)
Frame = +3
Query: 231 AWTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQE 395
+WTD + F W +HP+YWTK VWEWLQ D +LD +CI F
Sbjct: 22 SWTDLFSNEEYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQYKLDTNCISFCN 81
Query: 396 FDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDP 575
F+I+G LCSM+ +EF AAG G+ LY LQ+++ G ++ E++
Sbjct: 82 FNISGLQLCSMTQEEFVEAAGLCGEYLYFILQNIRTQG----------YSFFNDAEESKA 131
Query: 576 TIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDMKKEQDHPTKS 755
TI D DS + I K QD + S
Sbjct: 132 TIK------------------DYADSNCLKTSGI-----------------KSQDCHSHS 156
Query: 756 HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSS 935
T + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A++WG++K N
Sbjct: 157 RTSLQS---SHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDR 213
Query: 936 MTYEKLSRAMRYYYKREILERVDGRDWYINLEDARGWRKMK 1058
MTYEKLSRA+RYYYK ILERVD R Y ++A GW++ K
Sbjct: 214 MTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEDK 254
>ref|NP_938195.1| ETS-related transcription factor Elf-5 isoform 1 [Homo sapiens].
Length = 265
Score = 189 bits (480), Expect = 4e-48
Identities = 108/281 (38%), Positives = 150/281 (53%), Gaps = 5/281 (1%)
Frame = +3
Query: 231 AWTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQE 395
+WTD + F W +HP+YWTK VWEWLQ D +LD +CI F
Sbjct: 32 SWTDLFSNEEYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQYKLDTNCISFCN 91
Query: 396 FDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDP 575
F+I+G LCSM+ +EF AAG G+ LY LQ+++ G ++ E++
Sbjct: 92 FNISGLQLCSMTQEEFVEAAGLCGEYLYFILQNIRTQG----------YSFFNDAEESKA 141
Query: 576 TIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDMKKEQDHPTKS 755
TI D DS + I K QD + S
Sbjct: 142 TIK------------------DYADSNCLKTSGI-----------------KSQDCHSHS 166
Query: 756 HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSS 935
T + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A++WG++K N
Sbjct: 167 RTSLQS---SHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDR 223
Query: 936 MTYEKLSRAMRYYYKREILERVDGRDWYINLEDARGWRKMK 1058
MTYEKLSRA+RYYYK ILERVD R Y ++A GW++ K
Sbjct: 224 MTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEDK 264
>ref|NP_001107781.1| ETS-related transcription factor Elf-3 [Homo sapiens].
Length = 371
Score = 151 bits (381), Expect = 1e-36
Identities = 71/111 (63%), Positives = 88/111 (79%), Gaps = 1/111 (0%)
Frame = +3
Query: 723 MKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVA 902
+ KE + KH PRGTHLWEFIRDIL++P+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 253 LSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVA 312
Query: 903 QLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
QLWG+KK NS+MTYEKLSRAMRYYYKREILERVDGR +++ GW++
Sbjct: 313 QLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSSGWKE 363
Score = 57.8 bits (138), Expect = 2e-08
Identities = 25/70 (35%), Positives = 41/70 (58%)
Frame = +3
Query: 288 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG 467
W PQ+W+K QV +W+ + ++ N+ DAS I F D++G LC+ +L+E G G
Sbjct: 59 WLGEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLG 118
Query: 468 QLLYSNLQHL 497
L++ L+ L
Sbjct: 119 DQLHAQLRDL 128
>ref|NP_004424.3| ETS-related transcription factor Elf-3 [Homo sapiens].
Length = 371
Score = 151 bits (381), Expect = 1e-36
Identities = 71/111 (63%), Positives = 88/111 (79%), Gaps = 1/111 (0%)
Frame = +3
Query: 723 MKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVA 902
+ KE + KH PRGTHLWEFIRDIL++P+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 253 LSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVA 312
Query: 903 QLWGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINL-EDARGWRK 1052
QLWG+KK NS+MTYEKLSRAMRYYYKREILERVDGR +++ GW++
Sbjct: 313 QLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSSGWKE 363
Score = 57.8 bits (138), Expect = 2e-08
Identities = 25/70 (35%), Positives = 41/70 (58%)
Frame = +3
Query: 288 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG 467
W PQ+W+K QV +W+ + ++ N+ DAS I F D++G LC+ +L+E G G
Sbjct: 59 WLGEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLG 118
Query: 468 QLLYSNLQHL 497
L++ L+ L
Sbjct: 119 DQLHAQLRDL 128
>ref|NP_001230010.1| ETS-related transcription factor Elf-5 isoform 4 [Homo sapiens].
Length = 187
Score = 127 bits (318), Expect = 2e-29
Identities = 60/110 (54%), Positives = 83/110 (75%)
Frame = +3
Query: 729 KEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQL 908
K QD + S T + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A++
Sbjct: 80 KSQDCHSHSRTSLQS---SHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKM 136
Query: 909 WGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLEDARGWRKMK 1058
WG++K N MTYEKLSRA+RYYYK ILERVD R Y ++A GW++ K
Sbjct: 137 WGQRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEDK 186
>ref|NP_001230009.1| ETS-related transcription factor Elf-5 isoform 3 [Homo sapiens].
Length = 160
Score = 127 bits (318), Expect = 2e-29
Identities = 60/110 (54%), Positives = 83/110 (75%)
Frame = +3
Query: 729 KEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQL 908
K QD + S T + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A++
Sbjct: 53 KSQDCHSHSRTSLQS---SHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKM 109
Query: 909 WGEKKNNSSMTYEKLSRAMRYYYKREILERVDGRDWYINLEDARGWRKMK 1058
WG++K N MTYEKLSRA+RYYYK ILERVD R Y ++A GW++ K
Sbjct: 110 WGQRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEDK 159
>ref|NP_001193964.1| transcription factor ETV7 isoform 2 [Homo sapiens].
Length = 317
Score = 97.8 bits (242), Expect = 1e-20
Identities = 81/311 (26%), Positives = 132/311 (42%), Gaps = 35/311 (11%)
Frame = +3
Query: 183 GVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFG--------GQWHEIHPQYWTKYQVWEW 338
G + ++P + + PP T C G G+ I P W++ V W
Sbjct: 4 GELAISPISPVAAMPPLGTHVQARCEAQINLLGEGGICKLPGRLR-IQPALWSREDVLHW 62
Query: 339 LQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWN---- 506
L+ + C F++NG LC ++ +F A ++G +LY LQ++K
Sbjct: 63 LRWA--EQEYSLPCTAEHGFEMNGRALCILTKDDFRHRAPSSGDVLYELLQYIKTQRRAL 120
Query: 507 --GQCSSDLFQ----STHNVIVKTEQTDPTIMNSWKEENYLF---DPNYGSTVDLLDSKT 659
G +F+ + H+ + E T P+ M++ +L DP S LD
Sbjct: 121 VCGPFFGGIFRLKTPTQHSPVPPEEVTGPSQMDT--RRGHLLQPPDPGLTSNFGHLDDPG 178
Query: 660 FCR--------------AQISMTTTGHLPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWE 797
R A++ T G V P M + + + LW+
Sbjct: 179 LARWTPGKEESLNLCHCAELGCRTQG---VCSFPAMPQAPIDGRIADCRL-------LWD 228
Query: 798 FIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGEKKNNSSMTYEKLSRAMRYYY 977
++ +LL+ P IKWED+ IFR + +A+LWG KN +MTYEK+SRA+R+YY
Sbjct: 229 YVYQLLLDTRYEP-YIKWEDKDAKIFRVVDPNGLARLWGNHKNRVNMTYEKMSRALRHYY 287
Query: 978 KREILERVDGR 1010
K I+++ G+
Sbjct: 288 KLNIIKKEPGQ 298
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,808,350
Number of extensions: 1083136
Number of successful extensions: 3286
Number of sequences better than 1.0e-05: 63
Number of HSP's gapped: 3271
Number of HSP's successfully gapped: 67
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007685
(1063 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 492 e-136
>Sscrofa_Chr02
|| Length = 162569375
Score = 492 bits (248), Expect = e-136
Identities = 248/248 (100%)
Strand = Plus / Minus
Query: 261 gtttccagcgggttttttggaggccagtggcatgaaatccatcctcagtactggaccaag 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28673368 gtttccagcgggttttttggaggccagtggcatgaaatccatcctcagtactggaccaag 28673309
Query: 321 taccaggtgtgggagtggctccagcacctcctggacaccaaccagctggacgccagctgc 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28673308 taccaggtgtgggagtggctccagcacctcctggacaccaaccagctggacgccagctgc 28673249
Query: 381 atccctttccaggagtttgacatcaatggcgaacacctctgcagcatgagtctgcaggag 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28673248 atccctttccaggagtttgacatcaatggcgaacacctctgcagcatgagtctgcaggag 28673189
Query: 441 ttcacccgggcggcggggacggcggggcagctcctctacagcaacttgcagcatctcaag 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28673188 ttcacccgggcggcggggacggcggggcagctcctctacagcaacttgcagcatctcaag 28673129
Query: 501 tggaatgg 508
||||||||
Sbjct: 28673128 tggaatgg 28673121
Score = 381 bits (192), Expect = e-103
Identities = 195/196 (99%)
Strand = Plus / Minus
Query: 772 atcctcgagggactcacttatgggaattcattcgagacattctcctgaacccagacaaga 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28659536 atcctcgagggactcacttatgggaattcattcgagacattctcctgaacccagacaaga 28659477
Query: 832 atccggggttaatcaagtgggaagaccggtctgagggcatcttcaggttcttgaaatcag 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28659476 atccggggttaatcaagtgggaagaccggtctgagggcatcttcaggttcttgaaatcag 28659417
Query: 892 aggccgtggcacagctctggggggaaaagaaaaacaacagcagcatgacctacgaaaaac 951
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 28659416 aggccgtggcacagctctgggggaaaaagaaaaacaacagcagcatgacctacgaaaaac 28659357
Query: 952 tcagccgagccatgag 967
||||||||||||||||
Sbjct: 28659356 tcagccgagccatgag 28659341
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 1 ttattgtcatatgcatttatcttcactctgatgagggctcagacgtgataacactcctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28699570 ttattgtcatatgcatttatcttcactctgatgagggctcagacgtgataacactcctgg 28699511
Query: 61 ttccccattccccgtaggagctggcgtgagggctgcctgctgcttcccctccattagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28699510 ttccccattccccgtaggagctggcgtgagggctgcctgctgcttcccctccattagcca 28699451
Query: 121 cagctattggatttgccacccagaatctttaggtaaatgag 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 28699450 cagctattggatttgccacccagaatctttaggtaaatgag 28699410
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 160 agatcatgattctggaaggaagtggtgtaatgaatctcaaccccagcaacaacctcctcc 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28677376 agatcatgattctggaaggaagtggtgtaatgaatctcaaccccagcaacaacctcctcc 28677317
Query: 220 accagccgccggcctggacagacagctaccccacgtgcaatg 261
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28677316 accagccgccggcctggacagacagctaccccacgtgcaatg 28677275
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 638 agatttgttggacagcaaaactttctgccgggcccagatctccatgacaactactggtca 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28667030 agatttgttggacagcaaaactttctgccgggcccagatctccatgacaactactggtca 28666971
Query: 698 ccttcccgttg 708
|||||||||||
Sbjct: 28666970 ccttcccgttg 28666960
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 570 gaccctaccatcatgaactcctggaaagaagaaaactatttattcgaccccaactatggt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28667221 gaccctaccatcatgaactcctggaaagaagaaaactatttattcgaccccaactatggt 28667162
Query: 630 agcacagtag 639
||||||||||
Sbjct: 28667161 agcacagtag 28667152
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 708 gcagagtcacctgatatgaaaaaggagcaagatcaccctacaaagtcccacaccaaaaag 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28661287 gcagagtcacctgatatgaaaaaggagcaagatcaccctacaaagtcccacaccaaaaag 28661228
Query: 768 caca 771
||||
Sbjct: 28661227 caca 28661224
Score = 123 bits (62), Expect = 2e-25
Identities = 96/102 (94%), Gaps = 4/102 (3%)
Strand = Plus / Minus
Query: 966 agatattactacaaaagggagattctggaacgtgtggatggaag-agactggtatataaa 1024
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 28658969 agatattactacaaaagagagattctggaacgtgtggatggaagaagactggtatataaa 28658910
Query: 1025 ttt-ggaag-atgcccgtggatgga-ggaaaatgaaaactga 1063
||| ||||| |||| |||||||||| ||||||||||||||||
Sbjct: 28658909 tttgggaagaatgcacgtggatggagggaaaatgaaaactga 28658868
Score = 119 bits (60), Expect = 3e-24
Identities = 63/64 (98%)
Strand = Plus / Minus
Query: 507 ggccagtgcagcagtgacctgttccagtccacacacaacgtcattgtcaagaccgaacaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 28670276 ggccagtgcagcagtgacctgttccagtccacacacaacgtcattgtcaagacggaacaa 28670217
Query: 567 accg 570
||||
Sbjct: 28670216 accg 28670213
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,955,571
Number of extensions: 258
Number of successful extensions: 258
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 9
Length of query: 1063
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1042
Effective length of database: 2,808,413,156
Effective search space: 2926366508552
Effective search space used: 2926366508552
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)