Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007687
(1048 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033125.1| ETS homologous factor [Bos taurus]. 522 e-148
Alignment gi|NP_001019740.1| ETS-related transcription factor Elf-5 [Bos ... 137 1e-32
Alignment gi|NP_001092379.1| ETS-related transcription factor Elf-3 [Bos ... 93 3e-19
Alignment gi|NP_001075047.1| SAM pointed domain-containing Ets transcript... 50 3e-10
Alignment gi|NP_001068905.1| GA-binding protein alpha chain [Bos taurus]. 41 1e-09
Alignment gi|NP_001178067.1| ETS-related transcription factor Elf-2 [Bos ... 54 2e-07
Alignment gi|XP_002694390.1| PREDICTED: E74-like factor 2 (ets domain tra... 54 2e-07
Alignment gi|XP_002694389.1| PREDICTED: E74-like factor 2 (ets domain tra... 54 2e-07
Alignment gi|XP_001250103.1| PREDICTED: E74-like factor 2 (ets domain tra... 54 2e-07
Alignment gi|NP_001192538.1| ETS translocation variant 3 [Bos taurus]. 40 1e-06
>ref|NP_001033125.1| ETS homologous factor [Bos taurus].
Length = 300
Score = 522 bits (1345), Expect = e-148
Identities = 250/299 (83%), Positives = 259/299 (86%), Gaps = 1/299 (0%)
Frame = +3
Query: 153 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 332
MILEGSGVMNLNPSNNLLHQ P WTDSY TCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGSGVMNLNPSNNLLHQQPTWTDSYSTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 60
Query: 333 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 512
HLLDTNQLDASCIPFQEFD+NGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDASCIPFQEFDVNGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 120
Query: 513 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 692
LFQSTHNVIVKTEQTDP+IMN+WKEENYL+D NYGSTVDLLDSKTFCRAQISMTTTGHLP
Sbjct: 121 LFQSTHNVIVKTEQTDPSIMNTWKEENYLYDTNYGSTVDLLDSKTFCRAQISMTTTGHLP 180
Query: 693 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 872
+AESPD KKEQDHPTK HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL
Sbjct: 181 IAESPDTKKEQDHPTKPHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 240
Query: 873 KSEAVAQLWGXXXXXXXXXXXXSAEP*DITTK-ERFWNVWMEKTGI*IGENARGWREKK 1046
KSEAVAQLWG + K E V + G+NARGWRE +
Sbjct: 241 KSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENE 299
>ref|NP_001019740.1| ETS-related transcription factor Elf-5 [Bos taurus].
Length = 255
Score = 137 bits (346), Expect = 1e-32
Identities = 95/303 (31%), Positives = 139/303 (45%), Gaps = 17/303 (5%)
Frame = +3
Query: 189 PSNNLLHQPPAWTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQ 353
P+ + +WTD + F W +HP+YWTK VWEWLQ D +
Sbjct: 12 PNTSFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQYK 71
Query: 354 LDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHN 533
LDA+CI F F+I+G LC M+ +EF AAG G+ LY LQ ++ G ++
Sbjct: 72 LDANCISFCHFNISGLQLCGMTQEEFMEAAGVCGEYLYFILQSIRSQG----------YS 121
Query: 534 VIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDM 713
++T T+ D DS + T+G
Sbjct: 122 FFNDPDETKATLK------------------DYADSS-------CLKTSG---------- 146
Query: 714 KKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQ 893
K QD + S T + + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A+
Sbjct: 147 IKSQDCHSHSRT---SLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAK 203
Query: 894 LWGXXXXXXXXXXXXSAEP*DITTKERFWNV--WMEKTGI----------*IGENARGWR 1037
+WG + D T E+ + KTGI G+NA GW+
Sbjct: 204 MWG------------QRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQ 251
Query: 1038 EKK 1046
E K
Sbjct: 252 EDK 254
>ref|NP_001092379.1| ETS-related transcription factor Elf-3 [Bos taurus].
Length = 372
Score = 93.2 bits (230), Expect = 3e-19
Identities = 40/64 (62%), Positives = 50/64 (78%)
Frame = +3
Query: 711 MKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVA 890
+ KE + KH PRGTHLWEFIRDIL++P+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 254 LSKESRECLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRQEGVFKFLRSEAVA 313
Query: 891 QLWG 902
QLWG
Sbjct: 314 QLWG 317
Score = 71.6 bits (174), Expect = 1e-12
Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Frame = +2
Query: 743 PHQKAQSSRDSLMGIHSRHSPE--------------PRQESGVNQVGRPV*GHLQVLEIR 880
P + ++ SR+ L G S+H+P P G+ + G + L
Sbjct: 251 PRKLSKESRECLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRQEGVFKFLRSE 310
Query: 881 GRGTALGEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNWYINWGK 1021
G+K+K+SSMTYEKLSRAMRYYYKREILERVDG+ +G+
Sbjct: 311 AVAQLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGR 357
>ref|NP_001075047.1| SAM pointed domain-containing Ets transcription factor [Bos
taurus].
Length = 335
Score = 49.7 bits (117), Expect(2) = 3e-10
Identities = 45/204 (22%), Positives = 80/204 (39%)
Frame = +3
Query: 291 PQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYS 470
P W+ V +WL +L FQE + G+ LC+MS ++F + + G +L++
Sbjct: 147 PVDWSPGNVQKWLLWTEHQYRLPPVGKAFQE--LGGKELCAMSEEQFRQRSPLGGDVLHA 204
Query: 471 NLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTF 650
+L D+++S +W +E
Sbjct: 205 HL-----------DIWKSA----------------AWMKER------------------- 218
Query: 651 CRAQISMTTTGHLPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGL 830
T+ G + S + D S + + HLW+F++++LL P
Sbjct: 219 -------TSPGAIHFCASTSEESWTDSEVDSSC---SGQPIHLWQFLKELLLKPHSYGRF 268
Query: 831 IKWEDRSEGIFRFLKSEAVAQLWG 902
I+W ++ +GIF+ S VA+LWG
Sbjct: 269 IRWLNKEKGIFKIEDSAQVARLWG 292
Score = 33.5 bits (75), Expect(2) = 3e-10
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 899 GEKEKHSSMTYEKLSRAMRYYYKREILERVD 991
G ++ +M Y+KLSR++R YYK+ I+ + D
Sbjct: 292 GIRKNRPAMNYDKLSRSIRQYYKKGIIRKPD 322
>ref|NP_001068905.1| GA-binding protein alpha chain [Bos taurus].
Length = 454
Score = 41.2 bits (95), Expect(2) = 1e-09
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 7/211 (3%)
Frame = +3
Query: 291 PQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYS 470
P W+ QV W+ ++ + + I +I+G LCS+S ++F + G++L+S
Sbjct: 186 PIQWSTDQVLHWVVWVM--KEFSMTDIDLTTLNISGRELCSLSQEDFFQRV-PRGEILWS 242
Query: 471 NLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTF 650
+L+ L+ S + N IV +Q I S +
Sbjct: 243 HLELLRKYVLASQE---QQMNEIVTIDQPVQIIPASVQ---------------------- 277
Query: 651 CRAQISMTTTGHLPVAESPDMKKEQDHPTKSHTKKHNPRGT-------HLWEFIRDILLN 809
S T T + S K Q P S + +P LW+F+ ++L +
Sbjct: 278 -----SATPTAIKAINSSAKAAKVQRAPRISGEDRSSPGNRTGNNGQIQLWQFLLELLTD 332
Query: 810 PDKNPGLIKWEDRSEGIFRFLKSEAVAQLWG 902
D I W EG F+ + E VAQ WG
Sbjct: 333 KDARD-CISWVG-DEGEFKLNQPELVAQKWG 361
Score = 40.4 bits (93), Expect(2) = 1e-09
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +2
Query: 899 GEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNW 1003
G+++ +M YEKLSRA+RYYY +++ +V GK +
Sbjct: 361 GQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRF 395
>ref|NP_001178067.1| ETS-related transcription factor Elf-2 [Bos taurus].
Length = 582
Score = 54.3 bits (129), Expect = 2e-07
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +3
Query: 699 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 878
+SP D K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 172 QSPISNGSPDLGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 231
Query: 879 EAVAQLWG 902
+AV++LWG
Sbjct: 232 KAVSKLWG 239
>ref|XP_002694390.1| PREDICTED: E74-like factor 2 (ets domain transcription factor)
isoform 2 [Bos taurus].
Length = 534
Score = 54.3 bits (129), Expect = 2e-07
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +3
Query: 699 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 878
+SP D K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 124 QSPISNGSPDLGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 183
Query: 879 EAVAQLWG 902
+AV++LWG
Sbjct: 184 KAVSKLWG 191
>ref|XP_002694389.1| PREDICTED: E74-like factor 2 (ets domain transcription factor)
isoform 1 [Bos taurus].
Length = 582
Score = 54.3 bits (129), Expect = 2e-07
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +3
Query: 699 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 878
+SP D K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 172 QSPISNGSPDLGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 231
Query: 879 EAVAQLWG 902
+AV++LWG
Sbjct: 232 KAVSKLWG 239
>ref|XP_001250103.1| PREDICTED: E74-like factor 2 (ets domain transcription factor)
isoform 2 [Bos taurus].
Length = 534
Score = 54.3 bits (129), Expect = 2e-07
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +3
Query: 699 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 878
+SP D K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 124 QSPISNGSPDLGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 183
Query: 879 EAVAQLWG 902
+AV++LWG
Sbjct: 184 KAVSKLWG 191
>ref|NP_001192538.1| ETS translocation variant 3 [Bos taurus].
Length = 509
Score = 39.7 bits (91), Expect(2) = 1e-06
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 899 GEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNW 1003
G ++ M Y+KLSRA+RYYY + IL + GK +
Sbjct: 77 GRRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRF 111
Score = 31.6 bits (70), Expect(2) = 1e-06
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 693 VAESPDMKKEQDHPTKSHTKKHNP--RGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFR 866
V E P+ P ++ + +P R LW FI + LL ++ +I W+ G F
Sbjct: 7 VVEKPEGGGGYQFPDWAYKTESSPGSRQIQLWHFILE-LLQKEEFRHVIAWQQGEYGEFV 65
Query: 867 FLKSEAVAQLWG 902
+ VA+LWG
Sbjct: 66 IKDPDEVARLWG 77
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,495,855
Number of extensions: 1068090
Number of successful extensions: 3112
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3106
Number of HSP's successfully gapped: 24
Length of query: 349
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,273,310
Effective search space: 3511234260
Effective search space used: 3511234260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007687
(1048 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540546.2| PREDICTED: similar to ets homologous factor iso... 517 e-147
Alignment gi|XP_857258.1| PREDICTED: similar to ets homologous factor iso... 459 e-129
Alignment gi|XP_851152.1| PREDICTED: similar to E74-like factor 5 ESE-2a ... 144 2e-34
Alignment gi|XP_547356.2| PREDICTED: similar to E74-like factor 3 (ets do... 123 3e-28
Alignment gi|XP_535570.1| PREDICTED: similar to GA binding protein transc... 41 1e-09
Alignment gi|XP_538872.2| PREDICTED: similar to SAM pointed domain contai... 47 2e-09
Alignment gi|XP_857052.1| PREDICTED: similar to E74-like factor 1 (ets do... 53 5e-07
Alignment gi|XP_533288.2| PREDICTED: similar to ETS-related transcription... 53 5e-07
Alignment gi|XP_856018.1| PREDICTED: similar to E74-like factor 2 (ets do... 53 5e-07
Alignment gi|XP_855980.1| PREDICTED: similar to E74-like factor 2 (ets do... 53 5e-07
>ref|XP_540546.2| PREDICTED: similar to ets homologous factor isoform 1 [Canis
familiaris].
Length = 300
Score = 517 bits (1331), Expect = e-147
Identities = 247/299 (82%), Positives = 260/299 (86%), Gaps = 1/299 (0%)
Frame = +3
Query: 153 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 332
MILEGSGVMNLNPSNNLLHQ PAWTD Y TC+VSSGFFGGQWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGSGVMNLNPSNNLLHQQPAWTDGYSTCSVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 60
Query: 333 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 512
HLLDTNQLDASCIPFQEFD+NGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDASCIPFQEFDVNGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 120
Query: 513 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 692
LFQSTHNVIVKTEQ+DP+IMN+WKEENYL+D NYGSTVDLLDSKTFCRAQISMT+TGHLP
Sbjct: 121 LFQSTHNVIVKTEQSDPSIMNTWKEENYLYDTNYGSTVDLLDSKTFCRAQISMTSTGHLP 180
Query: 693 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 872
VAESP+MKKEQ+HP KSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL
Sbjct: 181 VAESPEMKKEQEHPAKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 240
Query: 873 KSEAVAQLWGXXXXXXXXXXXXSAEP*DITTK-ERFWNVWMEKTGI*IGENARGWREKK 1046
KSEAVAQLWG + K E V + G+NARGWRE +
Sbjct: 241 KSEAVAQLWGKKKNNNSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENE 299
>ref|XP_857258.1| PREDICTED: similar to ets homologous factor isoform 2 [Canis
familiaris].
Length = 277
Score = 459 bits (1181), Expect = e-129
Identities = 225/299 (75%), Positives = 237/299 (79%), Gaps = 1/299 (0%)
Frame = +3
Query: 153 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 332
MILEGSGVMNLNPSNNLLHQ PAWTD Y TC+VSSGFFGGQWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGSGVMNLNPSNNLLHQQPAWTDGYSTCSVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 60
Query: 333 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 512
HLLDTNQLDASCIPFQEFD+NGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDASCIPFQEFDVNGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 120
Query: 513 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 692
LFQSTHNVIVKTEQ+DP+IMN+WKEENYL+D NYGST
Sbjct: 121 LFQSTHNVIVKTEQSDPSIMNTWKEENYLYDTNYGST----------------------- 157
Query: 693 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 872
VAESP+MKKEQ+HP KSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL
Sbjct: 158 VAESPEMKKEQEHPAKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 217
Query: 873 KSEAVAQLWGXXXXXXXXXXXXSAEP*DITTK-ERFWNVWMEKTGI*IGENARGWREKK 1046
KSEAVAQLWG + K E V + G+NARGWRE +
Sbjct: 218 KSEAVAQLWGKKKNNNSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENE 276
>ref|XP_851152.1| PREDICTED: similar to E74-like factor 5 ESE-2a [Canis familiaris].
Length = 298
Score = 144 bits (362), Expect = 2e-34
Identities = 97/303 (32%), Positives = 142/303 (46%), Gaps = 17/303 (5%)
Frame = +3
Query: 189 PSNNLLHQPPAWTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQ 353
P+ + +WTD + F W +HP+YWTK VWEWLQ D +
Sbjct: 55 PNTSFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQYK 114
Query: 354 LDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHN 533
LDA+CI F F+++G LCSM+ +EF AAG G+ LY LQ+++ G ++
Sbjct: 115 LDANCISFCHFNVSGLQLCSMTQEEFVEAAGICGEYLYFILQNIRSQG----------YS 164
Query: 534 VIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDM 713
TE+T I D DS + T+G
Sbjct: 165 FFTDTEETKAAIK------------------DYADSN-------CLKTSG---------- 189
Query: 714 KKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQ 893
K QD ++S T + + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A+
Sbjct: 190 IKSQDCHSQSRT---SLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAK 246
Query: 894 LWGXXXXXXXXXXXXSAEP*DITTKERFWNV--WMEKTGI----------*IGENARGWR 1037
+WG + D T E+ + KTGI G+NA GW+
Sbjct: 247 MWG------------QRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQ 294
Query: 1038 EKK 1046
E K
Sbjct: 295 EDK 297
>ref|XP_547356.2| PREDICTED: similar to E74-like factor 3 (ets domain transcription
factor, epithelial-specific ) [Canis familiaris].
Length = 475
Score = 123 bits (308), Expect = 3e-28
Identities = 83/256 (32%), Positives = 114/256 (44%), Gaps = 47/256 (18%)
Frame = +3
Query: 276 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG 455
W PQ W+K QV +W+ + ++ N+ DAS I F D++G LC+ + +E G G
Sbjct: 165 WSGKQPQLWSKAQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCAPEELRLVFGPLG 224
Query: 456 QLLYSNL--------QHLKWNGQC---SSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLF 602
LYS L L W + S FQ + + ++ ++ F
Sbjct: 225 DQLYSQLWDLTASFPDELSWIIELLEKDSMAFQESLGPFDQGSPFSQEMLEESRQAGPYF 284
Query: 603 DPNYG-----------------------------STVDL--LDSKTFCRAQISMTTTGHL 689
+YG S VDL DSK F R G
Sbjct: 285 PGSYGPGALSPGSSDVSTAGTATSQSPHSSDSGGSDVDLDPTDSKLFSRDGFPDYKKGDP 344
Query: 690 PVAESP-----DMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSE 854
+ + KE + KH PRGTHLWEFIRDIL++P+ N GL+KWE+R E
Sbjct: 345 KHGKRKRGRPRKLSKESRECLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRQE 404
Query: 855 GIFRFLKSEAVAQLWG 902
G+F+FL+SEAVAQLWG
Sbjct: 405 GVFKFLRSEAVAQLWG 420
Score = 70.1 bits (170), Expect = 3e-12
Identities = 42/107 (39%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Frame = +2
Query: 743 PHQKAQSSRDSLMGIHSRHSPE--------------PRQESGVNQVGRPV*GHLQVLEIR 880
P + ++ SR+ L G S+H+P P G+ + G + L
Sbjct: 354 PRKLSKESRECLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRQEGVFKFLRSE 413
Query: 881 GRGTALGEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNWYINWGK 1021
G+K+K+SSMTYEKLSRAMRYYYKR ILERVDG+ +GK
Sbjct: 414 AVAQLWGQKKKNSSMTYEKLSRAMRYYYKRGILERVDGRRLVYKFGK 460
>ref|XP_535570.1| PREDICTED: similar to GA binding protein transcription factor,
alpha subunit (60kD) [Canis familiaris].
Length = 454
Score = 41.2 bits (95), Expect(2) = 1e-09
Identities = 46/204 (22%), Positives = 83/204 (40%)
Frame = +3
Query: 291 PQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYS 470
P W+ QV W+ ++ + + I +I+G LCS++ ++F + G++L+S
Sbjct: 186 PIQWSTDQVLHWVVWVM--KEFSMTDIDLTTLNISGRELCSLNQEDFFQRV-PRGEILWS 242
Query: 471 NLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTF 650
+L+ L+ S + N IV +Q I S + S T
Sbjct: 243 HLELLRKYVLASQE---QQMNEIVTIDQPVQIIPAS------------------VQSATP 281
Query: 651 CRAQISMTTTGHLPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGL 830
++ ++ V +P + E + T + LW+F+ ++L + D
Sbjct: 282 TTIKVINSSAKAAKVQRAPRISGEDRSSPGNRTGNNGQ--IQLWQFLLELLTDKDARD-C 338
Query: 831 IKWEDRSEGIFRFLKSEAVAQLWG 902
I W EG F+ + E VAQ WG
Sbjct: 339 ISWVG-DEGEFKLNQPELVAQKWG 361
Score = 40.4 bits (93), Expect(2) = 1e-09
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +2
Query: 899 GEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNW 1003
G+++ +M YEKLSRA+RYYY +++ +V GK +
Sbjct: 361 GQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRF 395
>ref|XP_538872.2| PREDICTED: similar to SAM pointed domain containing ets
transcription factor [Canis familiaris].
Length = 759
Score = 47.4 bits (111), Expect(2) = 2e-09
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +3
Query: 774 HLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWG 902
HLW+F++++LL P I+W ++ +GIF+ S VA+LWG
Sbjct: 674 HLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWG 716
Score = 33.5 bits (75), Expect(2) = 2e-09
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 899 GEKEKHSSMTYEKLSRAMRYYYKREILERVD 991
G ++ +M Y+KLSR++R YYK+ I+ + D
Sbjct: 716 GIRKNRPAMNYDKLSRSIRQYYKKGIIRKPD 746
>ref|XP_857052.1| PREDICTED: similar to E74-like factor 1 (ets domain transcription
factor) isoform 4 [Canis familiaris].
Length = 583
Score = 52.8 bits (125), Expect = 5e-07
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 17/133 (12%)
Frame = +3
Query: 555 TDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDMKKEQ--- 725
TD I +S E++ + P +V L Q T H P A SP+ K +
Sbjct: 84 TDNNIFSS-SEDDIVVAPITHVSVTLDGIPEVMETQQVQETYAHSPGASSPEQPKRKKGR 142
Query: 726 -------DHPTKS---HTKKHNPRGT----HLWEFIRDILLNPDKNPGLIKWEDRSEGIF 863
D P + KK N G +LWEF+ +L + P IKW R +GIF
Sbjct: 143 KTKPPRPDSPATTPNISVKKKNKDGKGNTIYLWEFLLALLQDKATCPKYIKWTQREKGIF 202
Query: 864 RFLKSEAVAQLWG 902
+ + S+AV++LWG
Sbjct: 203 KLVDSKAVSRLWG 215
>ref|XP_533288.2| PREDICTED: similar to ETS-related transcription factor Elf-2
(E74-like factor 2) (New ETS-related factor) isoform 1
[Canis familiaris].
Length = 592
Score = 52.8 bits (125), Expect = 5e-07
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +3
Query: 699 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 878
+SP + K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 184 QSPISNGSPELGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 243
Query: 879 EAVAQLWG 902
+AV++LWG
Sbjct: 244 KAVSKLWG 251
>ref|XP_856018.1| PREDICTED: similar to E74-like factor 2 (ets domain transcription
factor) isoform 1 isoform 4 [Canis familiaris].
Length = 580
Score = 52.8 bits (125), Expect = 5e-07
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +3
Query: 699 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 878
+SP + K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 172 QSPISNGSPELGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 231
Query: 879 EAVAQLWG 902
+AV++LWG
Sbjct: 232 KAVSKLWG 239
>ref|XP_855980.1| PREDICTED: similar to E74-like factor 2 (ets domain transcription
factor) isoform 1 isoform 3 [Canis familiaris].
Length = 580
Score = 52.8 bits (125), Expect = 5e-07
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +3
Query: 699 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 878
+SP + K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 172 QSPISNGSPELGIKKKPREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 231
Query: 879 EAVAQLWG 902
+AV++LWG
Sbjct: 232 KAVSKLWG 239
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,239,169
Number of extensions: 1103689
Number of successful extensions: 3327
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 3320
Number of HSP's successfully gapped: 27
Length of query: 349
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 245
Effective length of database: 15,407,560
Effective search space: 3774852200
Effective search space used: 3774852200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007687
(1048 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031940.1| ETS homologous factor [Mus musculus]. 516 e-147
Alignment gi|NP_001139285.1| ETS-related transcription factor Elf-5 [Mus ... 138 6e-33
Alignment gi|NP_034255.2| ETS-related transcription factor Elf-5 [Mus mus... 138 6e-33
Alignment gi|NP_001156603.1| ETS-related transcription factor Elf-3 isofo... 128 6e-30
Alignment gi|NP_031947.1| ETS-related transcription factor Elf-3 isoform ... 128 8e-30
Alignment gi|NP_038919.1| SAM pointed domain-containing Ets transcription... 52 6e-11
Alignment gi|NP_032091.2| GA-binding protein alpha chain [Mus musculus]. 44 1e-10
Alignment gi|NP_075991.1| ETS-related transcription factor Elf-2 [Mus mus... 53 3e-07
Alignment gi|NP_001076787.1| ETS translocation variant 3 [Mus musculus]. 40 1e-06
Alignment gi|NP_036181.3| ETS translocation variant 3 [Mus musculus]. 40 1e-06
>ref|NP_031940.1| ETS homologous factor [Mus musculus].
Length = 300
Score = 516 bits (1330), Expect = e-147
Identities = 247/299 (82%), Positives = 260/299 (86%), Gaps = 1/299 (0%)
Frame = +3
Query: 153 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 332
MILEGSGVMNLNP+NNLLHQ PAWTDSYPTCNVSSGFFG QWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGSGVMNLNPANNLLHQQPAWTDSYPTCNVSSGFFGSQWHEIHPQYWTKYQVWEWLQ 60
Query: 333 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 512
HLLDTNQLDASCIPFQEFDI+GEHLCSMSLQEFTRAAG+AGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDASCIPFQEFDISGEHLCSMSLQEFTRAAGSAGQLLYSNLQHLKWNGQCSSD 120
Query: 513 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 692
LFQS HNVIVKTEQTDP+IMN+WKEENYL+DP+YGSTVDLLDSKTFCRAQISMTT+ HLP
Sbjct: 121 LFQSAHNVIVKTEQTDPSIMNTWKEENYLYDPSYGSTVDLLDSKTFCRAQISMTTSSHLP 180
Query: 693 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 872
VAESPDMKKEQDHP KSHTKKHNPRGTHLWEFIRDILL+PDKNPGLIKWEDRSEGIFRFL
Sbjct: 181 VAESPDMKKEQDHPVKSHTKKHNPRGTHLWEFIRDILLSPDKNPGLIKWEDRSEGIFRFL 240
Query: 873 KSEAVAQLWGXXXXXXXXXXXXSAEP*DITTK-ERFWNVWMEKTGI*IGENARGWREKK 1046
KSEAVAQLWG + K E V + G+NARGWRE +
Sbjct: 241 KSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENE 299
>ref|NP_001139285.1| ETS-related transcription factor Elf-5 [Mus musculus].
Length = 253
Score = 138 bits (348), Expect = 6e-33
Identities = 92/292 (31%), Positives = 134/292 (45%), Gaps = 17/292 (5%)
Frame = +3
Query: 222 WTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEF 386
WTD + + F W +HP+YWTK VWEWLQ D +LDA+CI F F
Sbjct: 23 WTDLFSNEDYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHF 82
Query: 387 DINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPT 566
+I+G LCSM+ +EF AAG G+ LY LQ+++ G +
Sbjct: 83 NISGLQLCSMTQEEFIEAAGICGEYLYFILQNIRSQGY---------------------S 121
Query: 567 IMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDMKKEQDHPTKSH 746
N +E T TG A+S +K H
Sbjct: 122 FFNDAEE----------------------------TKTGIKDYADSSCLKTSGIKSQDCH 153
Query: 747 TKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGXXXXXXXX 926
++ + + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A++WG
Sbjct: 154 SRT-SLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWG-------- 204
Query: 927 XXXXSAEP*DITTKERFWNV--WMEKTGI----------*IGENARGWREKK 1046
+ D T E+ + KTGI G+NA GW+E+K
Sbjct: 205 ----QRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEEK 252
>ref|NP_034255.2| ETS-related transcription factor Elf-5 [Mus musculus].
Length = 253
Score = 138 bits (348), Expect = 6e-33
Identities = 92/292 (31%), Positives = 134/292 (45%), Gaps = 17/292 (5%)
Frame = +3
Query: 222 WTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEF 386
WTD + + F W +HP+YWTK VWEWLQ D +LDA+CI F F
Sbjct: 23 WTDLFSNEDYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHF 82
Query: 387 DINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPT 566
+I+G LCSM+ +EF AAG G+ LY LQ+++ G +
Sbjct: 83 NISGLQLCSMTQEEFIEAAGICGEYLYFILQNIRSQGY---------------------S 121
Query: 567 IMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDMKKEQDHPTKSH 746
N +E T TG A+S +K H
Sbjct: 122 FFNDAEE----------------------------TKTGIKDYADSSCLKTSGIKSQDCH 153
Query: 747 TKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGXXXXXXXX 926
++ + + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A++WG
Sbjct: 154 SRT-SLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWG-------- 204
Query: 927 XXXXSAEP*DITTKERFWNV--WMEKTGI----------*IGENARGWREKK 1046
+ D T E+ + KTGI G+NA GW+E+K
Sbjct: 205 ----QRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEEK 252
>ref|NP_001156603.1| ETS-related transcription factor Elf-3 isoform 1 [Mus musculus].
Length = 391
Score = 128 bits (322), Expect = 6e-30
Identities = 97/316 (30%), Positives = 144/316 (45%), Gaps = 55/316 (17%)
Frame = +3
Query: 120 FATQNL*V---NEIMILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIH 290
F T++L + N+ M LEG G + + TD +++ W
Sbjct: 34 FGTEDLVLTLNNQQMTLEGPGPQTRSQRDR--------TDPLAVLHLAEK---ASWTSER 82
Query: 291 PQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYS 470
PQ+W+K QV EW+ + ++ N+ DAS I F D++G LCS +L+E G G L++
Sbjct: 83 PQFWSKTQVLEWISYQVEKNKYDASSIDFSRCDMDGATLCSCALEELRLVFGPLGDQLHA 142
Query: 471 NLQHLKWNGQCSSDL-------------FQSTHNVIVKTEQTDP---TIMNSWKEENYLF 602
L+ L N S +L FQ + +Q P +++ ++ + +
Sbjct: 143 QLRDLTSNS--SDELSWIIELLEKDGMSFQESLGDSGPFDQGSPFAQELLDDGRQASPYY 200
Query: 603 DPNYGSTVDLLDSKTFCRAQISMTTTGH----------LPVAES--------PDMKK--- 719
YG S A+ + + H L + ES PD KK
Sbjct: 201 CSTYGPGAPSPGSSDVSTARTATPQSSHASDSGGSDVDLDLTESKVFPRDGFPDYKKGEP 260
Query: 720 -----EQDHPTK----------SHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSE 854
++ P K KH PRGTHLWEFIRDIL++P+ N GL+KWE+R E
Sbjct: 261 KHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHE 320
Query: 855 GIFRFLKSEAVAQLWG 902
G+F+FL+SEAVAQLWG
Sbjct: 321 GVFKFLRSEAVAQLWG 336
Score = 67.4 bits (163), Expect = 2e-11
Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Frame = +2
Query: 743 PHQKAQSSRDSLMGIHSRHSPE--------------PRQESGVNQVGRPV*GHLQVLEIR 880
P + ++ D L G S+H+P P G+ + G + L
Sbjct: 270 PRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSE 329
Query: 881 GRGTALGEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNWYINWGK 1021
G+K+K+S+MTYEKLSRAMRYYYKREILERVDG+ +GK
Sbjct: 330 AVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGK 376
>ref|NP_031947.1| ETS-related transcription factor Elf-3 isoform 2 [Mus musculus].
Length = 371
Score = 128 bits (321), Expect = 8e-30
Identities = 86/261 (32%), Positives = 124/261 (47%), Gaps = 52/261 (19%)
Frame = +3
Query: 276 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG 455
W PQ+W+K QV EW+ + ++ N+ DAS I F D++G LCS +L+E G G
Sbjct: 58 WTSERPQFWSKTQVLEWISYQVEKNKYDASSIDFSRCDMDGATLCSCALEELRLVFGPLG 117
Query: 456 QLLYSNLQHLKWNGQCSSDL-------------FQSTHNVIVKTEQTDP---TIMNSWKE 587
L++ L+ L N S +L FQ + +Q P +++ ++
Sbjct: 118 DQLHAQLRDLTSNS--SDELSWIIELLEKDGMSFQESLGDSGPFDQGSPFAQELLDDGRQ 175
Query: 588 ENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGH----------LPVAES--------PDM 713
+ + YG S A+ + + H L + ES PD
Sbjct: 176 ASPYYCSTYGPGAPSPGSSDVSTARTATPQSSHASDSGGSDVDLDLTESKVFPRDGFPDY 235
Query: 714 KK--------EQDHPTK----------SHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKW 839
KK ++ P K KH PRGTHLWEFIRDIL++P+ N GL+KW
Sbjct: 236 KKGEPKHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKW 295
Query: 840 EDRSEGIFRFLKSEAVAQLWG 902
E+R EG+F+FL+SEAVAQLWG
Sbjct: 296 ENRHEGVFKFLRSEAVAQLWG 316
Score = 67.4 bits (163), Expect = 2e-11
Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Frame = +2
Query: 743 PHQKAQSSRDSLMGIHSRHSPE--------------PRQESGVNQVGRPV*GHLQVLEIR 880
P + ++ D L G S+H+P P G+ + G + L
Sbjct: 250 PRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSE 309
Query: 881 GRGTALGEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNWYINWGK 1021
G+K+K+S+MTYEKLSRAMRYYYKREILERVDG+ +GK
Sbjct: 310 AVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGK 356
>ref|NP_038919.1| SAM pointed domain-containing Ets transcription factor [Mus
musculus].
Length = 325
Score = 51.6 bits (122), Expect(2) = 6e-11
Identities = 47/204 (23%), Positives = 81/204 (39%)
Frame = +3
Query: 291 PQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYS 470
P W+ V +WL +L + FQE + G+ LC+MS ++F + A G +L++
Sbjct: 137 PGDWSPGNVQKWLLWTEHQYRLPPAGKAFQE--LGGKELCAMSEEQFRQRAPLGGDVLHA 194
Query: 471 NLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTF 650
+L D+++S +W +E
Sbjct: 195 HL-----------DIWKSA----------------AWMKER------------------- 208
Query: 651 CRAQISMTTTGHLPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGL 830
T+ G L S + D S + + HLW+F++++LL P
Sbjct: 209 -------TSPGTLHYCASTSEEGWTDGEVDSSC---SGQPIHLWQFLKELLLKPHSYGRF 258
Query: 831 IKWEDRSEGIFRFLKSEAVAQLWG 902
I+W ++ +GIF+ S VA+LWG
Sbjct: 259 IRWLNKEKGIFKIEDSAQVARLWG 282
Score = 33.9 bits (76), Expect(2) = 6e-11
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 899 GEKEKHSSMTYEKLSRAMRYYYKREILERVD 991
G ++ +M Y+KLSR++R YYK+ I+ + D
Sbjct: 282 GVRKNRPAMNYDKLSRSIRQYYKKGIIRKPD 312
>ref|NP_032091.2| GA-binding protein alpha chain [Mus musculus].
Length = 454
Score = 43.9 bits (102), Expect(2) = 1e-10
Identities = 48/204 (23%), Positives = 85/204 (41%)
Frame = +3
Query: 291 PQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYS 470
P +W+ QV W+ ++ + + I +I+G LCS++ ++F + G++L+S
Sbjct: 186 PIHWSTDQVLHWVVWVM--KEFSMTDIDLTTLNISGRELCSLNQEDFFQRV-PRGEILWS 242
Query: 471 NLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTF 650
+L+ L+ S + N IV +Q I S P +T+ +++S
Sbjct: 243 HLELLRKYVLASQE---QQMNEIVTIDQPVQIIPAS-------VPPATPTTIKVINSSAK 292
Query: 651 CRAQISMTTTGHLPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGL 830
V SP + E + T + LW+F+ ++L + D
Sbjct: 293 AAK-----------VQRSPRISGEDRSSPGNRTGNNGQ--IQLWQFLLELLTDKDARD-C 338
Query: 831 IKWEDRSEGIFRFLKSEAVAQLWG 902
I W EG F+ + E VAQ WG
Sbjct: 339 ISWVG-DEGEFKLNQPELVAQKWG 361
Score = 40.4 bits (93), Expect(2) = 1e-10
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +2
Query: 899 GEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNW 1003
G+++ +M YEKLSRA+RYYY +++ +V GK +
Sbjct: 361 GQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRF 395
>ref|NP_075991.1| ETS-related transcription factor Elf-2 [Mus musculus].
Length = 593
Score = 53.1 bits (126), Expect = 3e-07
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +3
Query: 699 ESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKS 878
+SP + K ++ T+LWEF+ D+L + + P IKW R +GIF+ + S
Sbjct: 184 QSPVSNGSPELGIKKKAREGKGNTTYLWEFLLDLLQDKNTCPRYIKWTQREKGIFKLVDS 243
Query: 879 EAVAQLWG 902
+AV++LWG
Sbjct: 244 KAVSKLWG 251
>ref|NP_001076787.1| ETS translocation variant 3 [Mus musculus].
Length = 513
Score = 39.7 bits (91), Expect(2) = 1e-06
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 899 GEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNW 1003
G ++ M Y+KLSRA+RYYY + IL + GK +
Sbjct: 77 GRRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRF 111
Score = 31.2 bits (69), Expect(2) = 1e-06
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 693 VAESPDMKKEQDHPTKSHTKKHNP--RGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFR 866
+ E P+ P ++ + +P R LW FI + LL ++ +I W+ G F
Sbjct: 7 IVEKPEGGGGYQFPDWAYKAESSPGSRQIQLWHFILE-LLQKEEFRHVIAWQQGEYGEFV 65
Query: 867 FLKSEAVAQLWG 902
+ VA+LWG
Sbjct: 66 IKDPDEVARLWG 77
>ref|NP_036181.3| ETS translocation variant 3 [Mus musculus].
Length = 513
Score = 39.7 bits (91), Expect(2) = 1e-06
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 899 GEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNW 1003
G ++ M Y+KLSRA+RYYY + IL + GK +
Sbjct: 77 GRRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRF 111
Score = 31.2 bits (69), Expect(2) = 1e-06
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 693 VAESPDMKKEQDHPTKSHTKKHNP--RGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFR 866
+ E P+ P ++ + +P R LW FI + LL ++ +I W+ G F
Sbjct: 7 IVEKPEGGGGYQFPDWAYKAESSPGSRQIQLWHFILE-LLQKEEFRHVIAWQQGEYGEFV 65
Query: 867 FLKSEAVAQLWG 902
+ VA+LWG
Sbjct: 66 IKDPDEVARLWG 77
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,519,033
Number of extensions: 928477
Number of successful extensions: 2651
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2642
Number of HSP's successfully gapped: 27
Length of query: 349
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 247
Effective length of database: 12,553,887
Effective search space: 3100810089
Effective search space used: 3100810089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007687
(1048 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122919.1| PREDICTED: ETS homologous factor-like isofor... 545 e-155
Alignment gi|XP_003353956.1| PREDICTED: ETS homologous factor-like isofor... 542 e-154
Alignment gi|NP_001230640.1| ETS-related transcription factor Elf-5 [Sus ... 140 1e-33
Alignment gi|XP_003130654.2| PREDICTED: ETS-related transcription factor ... 94 1e-19
Alignment gi|NP_001177183.1| SAM pointed domain-containing Ets transcript... 47 2e-09
Alignment gi|XP_003131046.2| PREDICTED: ETS-related transcription factor ... 50 2e-06
Alignment gi|XP_001929530.1| PREDICTED: ETS translocation variant 3-like ... 40 3e-06
Alignment gi|XP_003135417.1| PREDICTED: ETS-related transcription factor ... 48 8e-06
>ref|XP_003122919.1| PREDICTED: ETS homologous factor-like isoform 1 [Sus scrofa].
Length = 309
Score = 545 bits (1405), Expect = e-155
Identities = 263/301 (87%), Positives = 267/301 (88%), Gaps = 1/301 (0%)
Frame = +3
Query: 147 EIMILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEW 326
EIMILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEW
Sbjct: 8 EIMILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEW 67
Query: 327 LQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCS 506
LQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCS
Sbjct: 68 LQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCS 127
Query: 507 SDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGH 686
SDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGH
Sbjct: 128 SDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGH 187
Query: 687 LPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFR 866
LPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFR
Sbjct: 188 LPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFR 247
Query: 867 FLKSEAVAQLWGXXXXXXXXXXXXSAEP*DITTK-ERFWNVWMEKTGI*IGENARGWREK 1043
FLKSEAVAQLWG + K E V + G+NARGWRE
Sbjct: 248 FLKSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWREN 307
Query: 1044 K 1046
+
Sbjct: 308 E 308
>ref|XP_003353956.1| PREDICTED: ETS homologous factor-like isoform 2 [Sus scrofa].
Length = 300
Score = 542 bits (1396), Expect = e-154
Identities = 261/299 (87%), Positives = 265/299 (88%), Gaps = 1/299 (0%)
Frame = +3
Query: 153 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 332
MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 60
Query: 333 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 512
HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 120
Query: 513 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 692
LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP
Sbjct: 121 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 180
Query: 693 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 872
VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL
Sbjct: 181 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 240
Query: 873 KSEAVAQLWGXXXXXXXXXXXXSAEP*DITTK-ERFWNVWMEKTGI*IGENARGWREKK 1046
KSEAVAQLWG + K E V + G+NARGWRE +
Sbjct: 241 KSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENE 299
>ref|NP_001230640.1| ETS-related transcription factor Elf-5 [Sus scrofa].
Length = 255
Score = 140 bits (353), Expect = 1e-33
Identities = 98/303 (32%), Positives = 140/303 (46%), Gaps = 17/303 (5%)
Frame = +3
Query: 189 PSNNLLHQPPAWTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQ 353
P+ N +WTD + + F W +HP+YWTK VWEWLQ D +
Sbjct: 12 PNANFCDPLMSWTDLFSSEEYYPAFEHQTACDPYWTSVHPEYWTKRHVWEWLQFCCDQYK 71
Query: 354 LDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHN 533
LDA+CI F F+I+G LCSM+ +EF AAG G+ LY LQ+++ G ++
Sbjct: 72 LDANCISFCHFNISGLQLCSMTQEEFIEAAGICGEYLYFILQNIRSQG----------YS 121
Query: 534 VIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDM 713
E+T I D DS + T+G
Sbjct: 122 FFNDAEETKAAIK------------------DYADSS-------CLKTSG---------- 146
Query: 714 KKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQ 893
K QD S T + + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A+
Sbjct: 147 IKSQDCHNHSRT---SLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAK 203
Query: 894 LWGXXXXXXXXXXXXSAEP*DITTKERFWNV--WMEKTGI----------*IGENARGWR 1037
+WG + D T E+ + KTGI G+NA GW+
Sbjct: 204 MWG------------QRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQ 251
Query: 1038 EKK 1046
E K
Sbjct: 252 EDK 254
>ref|XP_003130654.2| PREDICTED: ETS-related transcription factor Elf-3-like [Sus
scrofa].
Length = 303
Score = 94.0 bits (232), Expect = 1e-19
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +3
Query: 711 MKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVA 890
+ KE + KH PRGTHLWEFIRDIL+NP+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 185 LSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRQEGVFKFLRSEAVA 244
Query: 891 QLWG 902
QLWG
Sbjct: 245 QLWG 248
Score = 72.8 bits (177), Expect = 3e-13
Identities = 45/114 (39%), Positives = 59/114 (51%), Gaps = 16/114 (14%)
Frame = +2
Query: 743 PHQKAQSSRDSLMGIHSRHSPE--------------PRQESGVNQVGRPV*GHLQVLEIR 880
P + ++ SR L G S+H+P P G+ + G + L
Sbjct: 182 PRKLSKESRGCLEGTKSKHAPRGTHLWEFIRDILINPELNEGLMKWENRQEGVFKFLRSE 241
Query: 881 GRGTALGEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNWYINWGKCT--WME 1036
G+K+K+SSMTYEKLSRAMRYYYKREILERVDG+ +GK + W E
Sbjct: 242 AVAQLWGQKKKNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSSGWQE 295
>ref|NP_001177183.1| SAM pointed domain-containing Ets transcription factor [Sus
scrofa].
Length = 335
Score = 47.4 bits (111), Expect(2) = 2e-09
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +3
Query: 774 HLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWG 902
HLW+F++++LL P I+W ++ +GIF+ S VA+LWG
Sbjct: 250 HLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWG 292
Score = 32.3 bits (72), Expect(2) = 2e-09
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 899 GEKEKHSSMTYEKLSRAMRYYYKREILERVD 991
G ++ +M Y+KLSR++R YY++ I+ + D
Sbjct: 292 GIRKNRPAMNYDKLSRSIRQYYRKGIIRKPD 322
>ref|XP_003131046.2| PREDICTED: ETS-related transcription factor Elf-1 isoform 1 [Sus
scrofa].
Length = 503
Score = 50.1 bits (118), Expect = 2e-06
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 17/133 (12%)
Frame = +3
Query: 555 TDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDM-KKEQDH 731
TD I +S E+ + P +V L Q T H P SP+ KK++
Sbjct: 7 TDNNIFSS--SEDDVIAPITHVSVTLDGIPEVMETQQVQETFAHSPGPSSPEQPKKKKGR 64
Query: 732 PTKS------------HTKKHNPRGT----HLWEFIRDILLNPDKNPGLIKWEDRSEGIF 863
TK KK N G +LWEF+ +L + P IKW R +GIF
Sbjct: 65 KTKPPRPDSPATTPNISVKKKNKDGKGNTIYLWEFLLALLQDKATCPKYIKWTQREKGIF 124
Query: 864 RFLKSEAVAQLWG 902
+ + S+AV++LWG
Sbjct: 125 KLVDSKAVSRLWG 137
>ref|XP_001929530.1| PREDICTED: ETS translocation variant 3-like protein-like [Sus
scrofa].
Length = 358
Score = 39.7 bits (91), Expect(2) = 3e-06
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 899 GEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNW 1003
G ++ M Y+KLSRA+RYYY + IL + GK +
Sbjct: 82 GRRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRF 116
Score = 29.3 bits (64), Expect(2) = 3e-06
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 765 RGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWG 902
R LW FI + LL ++ +I W+ G F + VA+LWG
Sbjct: 38 RQIQLWHFILE-LLQKEEFRHVIAWQQGEYGEFVIKDPDEVARLWG 82
>ref|XP_003135417.1| PREDICTED: ETS-related transcription factor Elf-4 [Sus scrofa].
Length = 662
Score = 48.1 bits (113), Expect = 8e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 732 PTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWG 902
P + +K +LWEF+ +L + + P IKW R +GIF+ + S+AV++LWG
Sbjct: 195 PIRKKSKDGKGSTIYLWEFLLALLQDRNTCPKYIKWTQREKGIFKLVDSKAVSKLWG 251
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,414,440
Number of extensions: 684450
Number of successful extensions: 1898
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1894
Number of HSP's successfully gapped: 16
Length of query: 349
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 249
Effective length of database: 8,854,232
Effective search space: 2204703768
Effective search space used: 2204703768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007687
(1048 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193545.1| ETS homologous factor isoform 1 [Homo sapien... 516 e-146
Alignment gi|NP_036285.2| ETS homologous factor isoform 2 [Homo sapiens]. 514 e-146
Alignment gi|NP_001193544.1| ETS homologous factor isoform 3 [Homo sapien... 457 e-129
Alignment gi|NP_001413.1| ETS-related transcription factor Elf-5 isoform ... 139 4e-33
Alignment gi|NP_938195.1| ETS-related transcription factor Elf-5 isoform ... 139 4e-33
Alignment gi|NP_001107781.1| ETS-related transcription factor Elf-3 [Homo... 91 1e-18
Alignment gi|NP_004424.3| ETS-related transcription factor Elf-3 [Homo sa... 91 1e-18
Alignment gi|NP_001230010.1| ETS-related transcription factor Elf-5 isofo... 77 3e-14
Alignment gi|NP_001230009.1| ETS-related transcription factor Elf-5 isofo... 77 3e-14
Alignment gi|NP_036523.1| SAM pointed domain-containing Ets transcription... 50 2e-10
>ref|NP_001193545.1| ETS homologous factor isoform 1 [Homo sapiens].
Length = 322
Score = 516 bits (1330), Expect = e-146
Identities = 247/301 (82%), Positives = 259/301 (86%), Gaps = 1/301 (0%)
Frame = +3
Query: 147 EIMILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEW 326
+IMILEG GVMNLNP NNLLHQPPAWTDSY TCNVSSGFFGGQWHEIHPQYWTKYQVWEW
Sbjct: 21 KIMILEGGGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGFFGGQWHEIHPQYWTKYQVWEW 80
Query: 327 LQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCS 506
LQHLLDTNQLDA+CIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCS
Sbjct: 81 LQHLLDTNQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCS 140
Query: 507 SDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGH 686
SDLFQSTHNVIVKTEQT+P+IMN+WK+ENYL+D NYGSTVDLLDSKTFCRAQISMTTT H
Sbjct: 141 SDLFQSTHNVIVKTEQTEPSIMNTWKDENYLYDTNYGSTVDLLDSKTFCRAQISMTTTSH 200
Query: 687 LPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFR 866
LPVAESPDMKKEQD P K HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEG+FR
Sbjct: 201 LPVAESPDMKKEQDPPAKCHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFR 260
Query: 867 FLKSEAVAQLWGXXXXXXXXXXXXSAEP*DITTK-ERFWNVWMEKTGI*IGENARGWREK 1043
FLKSEAVAQLWG + K E V + G+NARGWRE
Sbjct: 261 FLKSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWREN 320
Query: 1044 K 1046
+
Sbjct: 321 E 321
>ref|NP_036285.2| ETS homologous factor isoform 2 [Homo sapiens].
Length = 300
Score = 514 bits (1325), Expect = e-146
Identities = 246/299 (82%), Positives = 257/299 (85%), Gaps = 1/299 (0%)
Frame = +3
Query: 153 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 332
MILEG GVMNLNP NNLLHQPPAWTDSY TCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGGGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 60
Query: 333 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 512
HLLDTNQLDA+CIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 120
Query: 513 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 692
LFQSTHNVIVKTEQT+P+IMN+WK+ENYL+D NYGSTVDLLDSKTFCRAQISMTTT HLP
Sbjct: 121 LFQSTHNVIVKTEQTEPSIMNTWKDENYLYDTNYGSTVDLLDSKTFCRAQISMTTTSHLP 180
Query: 693 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 872
VAESPDMKKEQD P K HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEG+FRFL
Sbjct: 181 VAESPDMKKEQDPPAKCHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFL 240
Query: 873 KSEAVAQLWGXXXXXXXXXXXXSAEP*DITTK-ERFWNVWMEKTGI*IGENARGWREKK 1046
KSEAVAQLWG + K E V + G+NARGWRE +
Sbjct: 241 KSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENE 299
>ref|NP_001193544.1| ETS homologous factor isoform 3 [Homo sapiens].
Length = 277
Score = 457 bits (1177), Expect = e-129
Identities = 224/299 (74%), Positives = 235/299 (78%), Gaps = 1/299 (0%)
Frame = +3
Query: 153 MILEGSGVMNLNPSNNLLHQPPAWTDSYPTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 332
MILEG GVMNLNP NNLLHQPPAWTDSY TCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ
Sbjct: 1 MILEGGGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQ 60
Query: 333 HLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 512
HLLDTNQLDA+CIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD
Sbjct: 61 HLLDTNQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSD 120
Query: 513 LFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLP 692
LFQSTHNVIVKTEQT+P+IMN+WK+ENYL+D NYGST
Sbjct: 121 LFQSTHNVIVKTEQTEPSIMNTWKDENYLYDTNYGST----------------------- 157
Query: 693 VAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFL 872
VAESPDMKKEQD P K HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEG+FRFL
Sbjct: 158 VAESPDMKKEQDPPAKCHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFL 217
Query: 873 KSEAVAQLWGXXXXXXXXXXXXSAEP*DITTK-ERFWNVWMEKTGI*IGENARGWREKK 1046
KSEAVAQLWG + K E V + G+NARGWRE +
Sbjct: 218 KSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENE 276
>ref|NP_001413.1| ETS-related transcription factor Elf-5 isoform 2 [Homo sapiens].
Length = 255
Score = 139 bits (350), Expect = 4e-33
Identities = 95/293 (32%), Positives = 137/293 (46%), Gaps = 17/293 (5%)
Frame = +3
Query: 219 AWTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQE 383
+WTD + F W +HP+YWTK VWEWLQ D +LD +CI F
Sbjct: 22 SWTDLFSNEEYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQYKLDTNCISFCN 81
Query: 384 FDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDP 563
F+I+G LCSM+ +EF AAG G+ LY LQ+++ G ++ E++
Sbjct: 82 FNISGLQLCSMTQEEFVEAAGLCGEYLYFILQNIRTQG----------YSFFNDAEESKA 131
Query: 564 TIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDMKKEQDHPTKS 743
TI D DS + T+G K QD + S
Sbjct: 132 TIK------------------DYADSN-------CLKTSG----------IKSQDCHSHS 156
Query: 744 HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGXXXXXXX 923
T + + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A++WG
Sbjct: 157 RT---SLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWG------- 206
Query: 924 XXXXXSAEP*DITTKERFWNV--WMEKTGI----------*IGENARGWREKK 1046
+ D T E+ + KTGI G+NA GW+E K
Sbjct: 207 -----QRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEDK 254
>ref|NP_938195.1| ETS-related transcription factor Elf-5 isoform 1 [Homo sapiens].
Length = 265
Score = 139 bits (350), Expect = 4e-33
Identities = 95/293 (32%), Positives = 137/293 (46%), Gaps = 17/293 (5%)
Frame = +3
Query: 219 AWTDSYPTCNVSSGF-----FGGQWHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQE 383
+WTD + F W +HP+YWTK VWEWLQ D +LD +CI F
Sbjct: 32 SWTDLFSNEEYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCDQYKLDTNCISFCN 91
Query: 384 FDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQSTHNVIVKTEQTDP 563
F+I+G LCSM+ +EF AAG G+ LY LQ+++ G ++ E++
Sbjct: 92 FNISGLQLCSMTQEEFVEAAGLCGEYLYFILQNIRTQG----------YSFFNDAEESKA 141
Query: 564 TIMNSWKEENYLFDPNYGSTVDLLDSKTFCRAQISMTTTGHLPVAESPDMKKEQDHPTKS 743
TI D DS + T+G K QD + S
Sbjct: 142 TIK------------------DYADSN-------CLKTSG----------IKSQDCHSHS 166
Query: 744 HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGXXXXXXX 923
T + + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A++WG
Sbjct: 167 RT---SLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWG------- 216
Query: 924 XXXXXSAEP*DITTKERFWNV--WMEKTGI----------*IGENARGWREKK 1046
+ D T E+ + KTGI G+NA GW+E K
Sbjct: 217 -----QRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEDK 264
>ref|NP_001107781.1| ETS-related transcription factor Elf-3 [Homo sapiens].
Length = 371
Score = 91.3 bits (225), Expect = 1e-18
Identities = 40/64 (62%), Positives = 50/64 (78%)
Frame = +3
Query: 711 MKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVA 890
+ KE + KH PRGTHLWEFIRDIL++P+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 253 LSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVA 312
Query: 891 QLWG 902
QLWG
Sbjct: 313 QLWG 316
Score = 67.4 bits (163), Expect = 2e-11
Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Frame = +2
Query: 743 PHQKAQSSRDSLMGIHSRHSPE--------------PRQESGVNQVGRPV*GHLQVLEIR 880
P + ++ D L G S+H+P P G+ + G + L
Sbjct: 250 PRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSE 309
Query: 881 GRGTALGEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNWYINWGK 1021
G+K+K+S+MTYEKLSRAMRYYYKREILERVDG+ +GK
Sbjct: 310 AVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGK 356
Score = 57.8 bits (138), Expect = 2e-08
Identities = 25/70 (35%), Positives = 41/70 (58%)
Frame = +3
Query: 276 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG 455
W PQ+W+K QV +W+ + ++ N+ DAS I F D++G LC+ +L+E G G
Sbjct: 59 WLGEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLG 118
Query: 456 QLLYSNLQHL 485
L++ L+ L
Sbjct: 119 DQLHAQLRDL 128
>ref|NP_004424.3| ETS-related transcription factor Elf-3 [Homo sapiens].
Length = 371
Score = 91.3 bits (225), Expect = 1e-18
Identities = 40/64 (62%), Positives = 50/64 (78%)
Frame = +3
Query: 711 MKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVA 890
+ KE + KH PRGTHLWEFIRDIL++P+ N GL+KWE+R EG+F+FL+SEAVA
Sbjct: 253 LSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVA 312
Query: 891 QLWG 902
QLWG
Sbjct: 313 QLWG 316
Score = 67.4 bits (163), Expect = 2e-11
Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Frame = +2
Query: 743 PHQKAQSSRDSLMGIHSRHSPE--------------PRQESGVNQVGRPV*GHLQVLEIR 880
P + ++ D L G S+H+P P G+ + G + L
Sbjct: 250 PRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSE 309
Query: 881 GRGTALGEKEKHSSMTYEKLSRAMRYYYKREILERVDGKNWYINWGK 1021
G+K+K+S+MTYEKLSRAMRYYYKREILERVDG+ +GK
Sbjct: 310 AVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGK 356
Score = 57.8 bits (138), Expect = 2e-08
Identities = 25/70 (35%), Positives = 41/70 (58%)
Frame = +3
Query: 276 WHEIHPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAG 455
W PQ+W+K QV +W+ + ++ N+ DAS I F D++G LC+ +L+E G G
Sbjct: 59 WLGEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLG 118
Query: 456 QLLYSNLQHL 485
L++ L+ L
Sbjct: 119 DQLHAQLRDL 128
>ref|NP_001230010.1| ETS-related transcription factor Elf-5 isoform 4 [Homo sapiens].
Length = 187
Score = 77.0 bits (188), Expect = 3e-14
Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 12/122 (9%)
Frame = +3
Query: 717 KEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQL 896
K QD + S T + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A++
Sbjct: 80 KSQDCHSHSRTSLQS---SHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKM 136
Query: 897 WGXXXXXXXXXXXXSAEP*DITTKERFWNV--WMEKTGI----------*IGENARGWRE 1040
WG + D T E+ + KTGI G+NA GW+E
Sbjct: 137 WG------------QRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQE 184
Query: 1041 KK 1046
K
Sbjct: 185 DK 186
>ref|NP_001230009.1| ETS-related transcription factor Elf-5 isoform 3 [Homo sapiens].
Length = 160
Score = 77.0 bits (188), Expect = 3e-14
Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 12/122 (9%)
Frame = +3
Query: 717 KEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGIFRFLKSEAVAQL 896
K QD + S T + +HLWEF+RD+LL+P++N G+++WEDR +GIFR +KSEA+A++
Sbjct: 53 KSQDCHSHSRTSLQS---SHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKM 109
Query: 897 WGXXXXXXXXXXXXSAEP*DITTKERFWNV--WMEKTGI----------*IGENARGWRE 1040
WG + D T E+ + KTGI G+NA GW+E
Sbjct: 110 WG------------QRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQE 157
Query: 1041 KK 1046
K
Sbjct: 158 DK 159
>ref|NP_036523.1| SAM pointed domain-containing Ets transcription factor [Homo
sapiens].
Length = 335
Score = 50.4 bits (119), Expect(2) = 2e-10
Identities = 45/204 (22%), Positives = 80/204 (39%)
Frame = +3
Query: 291 PQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYS 470
P W+ V +WL +L FQE + G+ LC+MS ++F + + G +L++
Sbjct: 147 PMDWSPSNVQKWLLWTEHQYRLPPMGKAFQE--LAGKELCAMSEEQFRQRSPLGGDVLHA 204
Query: 471 NLQHLKWNGQCSSDLFQSTHNVIVKTEQTDPTIMNSWKEENYLFDPNYGSTVDLLDSKTF 650
+L D+++S +W +E
Sbjct: 205 HL-----------DIWKSA----------------AWMKER------------------- 218
Query: 651 CRAQISMTTTGHLPVAESPDMKKEQDHPTKSHTKKHNPRGTHLWEFIRDILLNPDKNPGL 830
T+ G + S + D S + + HLW+F++++LL P
Sbjct: 219 -------TSPGAIHYCASTSEESWTDSEVDSSC---SGQPIHLWQFLKELLLKPHSYGRF 268
Query: 831 IKWEDRSEGIFRFLKSEAVAQLWG 902
I+W ++ +GIF+ S VA+LWG
Sbjct: 269 IRWLNKEKGIFKIEDSAQVARLWG 292
Score = 33.5 bits (75), Expect(2) = 2e-10
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 899 GEKEKHSSMTYEKLSRAMRYYYKREILERVD 991
G ++ +M Y+KLSR++R YYK+ I+ + D
Sbjct: 292 GIRKNRPAMNYDKLSRSIRQYYKKGIIRKPD 322
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,577,464
Number of extensions: 1095319
Number of successful extensions: 3260
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 3244
Number of HSP's successfully gapped: 37
Length of query: 349
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,901,872
Effective search space: 3665860512
Effective search space used: 3665860512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007687
(1048 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 492 e-136
>Sscrofa_Chr02
|| Length = 162569375
Score = 492 bits (248), Expect = e-136
Identities = 248/248 (100%)
Strand = Plus / Minus
Query: 249 gtttccagcgggttttttggaggccagtggcatgaaatccatcctcagtactggaccaag 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28673368 gtttccagcgggttttttggaggccagtggcatgaaatccatcctcagtactggaccaag 28673309
Query: 309 taccaggtgtgggagtggctccagcacctcctggacaccaaccagctggacgccagctgc 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28673308 taccaggtgtgggagtggctccagcacctcctggacaccaaccagctggacgccagctgc 28673249
Query: 369 atccctttccaggagtttgacatcaatggcgaacacctctgcagcatgagtctgcaggag 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28673248 atccctttccaggagtttgacatcaatggcgaacacctctgcagcatgagtctgcaggag 28673189
Query: 429 ttcacccgggcggcggggacggcggggcagctcctctacagcaacttgcagcatctcaag 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28673188 ttcacccgggcggcggggacggcggggcagctcctctacagcaacttgcagcatctcaag 28673129
Query: 489 tggaatgg 496
||||||||
Sbjct: 28673128 tggaatgg 28673121
Score = 373 bits (188), Expect = e-100
Identities = 195/196 (99%), Gaps = 1/196 (0%)
Strand = Plus / Minus
Query: 760 atcctcgagggactcacttatgggaattcattcgagacattctcctgaacccagacaaga 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28659536 atcctcgagggactcacttatgggaattcattcgagacattctcctgaacccagacaaga 28659477
Query: 820 atccggggttaatcaagtgggaagaccggtctgagggcatcttcaggttcttgaaatcag 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28659476 atccggggttaatcaagtgggaagaccggtctgagggcatcttcaggttcttgaaatcag 28659417
Query: 880 aggccgtggcacagctctgggggaaaaagaaaaac-acagcagcatgacctacgaaaaac 938
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 28659416 aggccgtggcacagctctgggggaaaaagaaaaacaacagcagcatgacctacgaaaaac 28659357
Query: 939 tcagccgagccatgag 954
||||||||||||||||
Sbjct: 28659356 tcagccgagccatgag 28659341
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 1 gcatttatcttcactctgatgagggctcagacgtgataacactcctggttccccattccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28699558 gcatttatcttcactctgatgagggctcagacgtgataacactcctggttccccattccc 28699499
Query: 61 cgtaggagctggcgtgagggctgcctgctgcttcccctccattagccacagctattggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28699498 cgtaggagctggcgtgagggctgcctgctgcttcccctccattagccacagctattggat 28699439
Query: 121 ttgccacccagaatctttaggtaaatgag 149
|||||||||||||||||||||||||||||
Sbjct: 28699438 ttgccacccagaatctttaggtaaatgag 28699410
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 148 agatcatgattctggaaggaagtggtgtaatgaatctcaaccccagcaacaacctcctcc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28677376 agatcatgattctggaaggaagtggtgtaatgaatctcaaccccagcaacaacctcctcc 28677317
Query: 208 accagccgccggcctggacagacagctaccccacgtgcaatg 249
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28677316 accagccgccggcctggacagacagctaccccacgtgcaatg 28677275
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 626 agatttgttggacagcaaaactttctgccgggcccagatctccatgacaactactggtca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28667030 agatttgttggacagcaaaactttctgccgggcccagatctccatgacaactactggtca 28666971
Query: 686 ccttcccgttg 696
|||||||||||
Sbjct: 28666970 ccttcccgttg 28666960
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 558 gaccctaccatcatgaactcctggaaagaagaaaactatttattcgaccccaactatggt 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28667221 gaccctaccatcatgaactcctggaaagaagaaaactatttattcgaccccaactatggt 28667162
Query: 618 agcacagtag 627
||||||||||
Sbjct: 28667161 agcacagtag 28667152
Score = 135 bits (68), Expect = 5e-29
Identities = 88/92 (95%), Gaps = 2/92 (2%)
Strand = Plus / Minus
Query: 953 agatattactacaaaagagagattctggaacgtgtggatggaa-aaaactggtatataaa 1011
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 28658969 agatattactacaaaagagagattctggaacgtgtggatggaagaagactggtatataaa 28658910
Query: 1012 ttggggaa-aatgcacgtggatggagggaaaa 1042
|| ||||| |||||||||||||||||||||||
Sbjct: 28658909 tttgggaagaatgcacgtggatggagggaaaa 28658878
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 696 gcagagtcacctgatatgaaaaaggagcaagatcaccctacaaagtcccacaccaaaaag 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28661287 gcagagtcacctgatatgaaaaaggagcaagatcaccctacaaagtcccacaccaaaaag 28661228
Query: 756 caca 759
||||
Sbjct: 28661227 caca 28661224
Score = 119 bits (60), Expect = 3e-24
Identities = 63/64 (98%)
Strand = Plus / Minus
Query: 495 ggccagtgcagcagtgacctgttccagtccacacacaacgtcattgtcaagaccgaacaa 554
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 28670276 ggccagtgcagcagtgacctgttccagtccacacacaacgtcattgtcaagacggaacaa 28670217
Query: 555 accg 558
||||
Sbjct: 28670216 accg 28670213
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,613,244
Number of extensions: 259
Number of successful extensions: 259
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 9
Length of query: 1048
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1027
Effective length of database: 2,808,413,156
Effective search space: 2884240311212
Effective search space used: 2884240311212
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)