Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007691
(1261 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179757.1| ras-related GTP-binding protein D [Bos tauru... 603 e-173
Alignment gi|XP_002683737.1| PREDICTED: Ras-related GTP binding D, partia... 543 e-154
Alignment gi|NP_001069924.1| ras-related GTP-binding protein C [Bos tauru... 490 e-138
Alignment gi|XP_002685294.1| PREDICTED: Ras-related GTP binding A-like [B... 78 2e-14
Alignment gi|XP_871161.1| PREDICTED: Ras-related GTP binding A [Bos tauru... 78 2e-14
Alignment gi|NP_001030576.1| ras-related GTP-binding protein A [Bos tauru... 76 5e-14
Alignment gi|XP_001790341.2| PREDICTED: Ras-related GTP binding A [Bos ta... 76 5e-14
Alignment gi|NP_001068747.1| ras-related GTP-binding protein B [Bos tauru... 68 1e-11
Alignment gi|XP_002707883.1| PREDICTED: Rraga protein-like [Bos taurus]. 52 1e-06
>ref|NP_001179757.1| ras-related GTP-binding protein D [Bos taurus].
Length = 397
Score = 603 bits (1556), Expect = e-173
Identities = 305/319 (95%), Positives = 306/319 (95%), Gaps = 1/319 (0%)
Frame = +3
Query: 306 MSQVLGKPQPXXXXXXXXXX-LVGLADYGDGPDSSDAERDSGAEEGVLDFSDPFSTEVKP 482
MSQVLGKPQP LVGLADYGDGPDSSDAE DSGAEEGVLDFSDPFSTEVKP
Sbjct: 1 MSQVLGKPQPEEEEDDEEEDELVGLADYGDGPDSSDAEPDSGAEEGVLDFSDPFSTEVKP 60
Query: 483 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 662
RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID
Sbjct: 61 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 120
Query: 663 FFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVDG 842
FFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVDG
Sbjct: 121 FFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVDG 180
Query: 843 LSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPT 1022
LSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPT
Sbjct: 181 LSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPT 240
Query: 1023 LENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDLSCIYGLK 1202
LENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVID+SCIYGLK
Sbjct: 241 LENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDISCIYGLK 300
Query: 1203 EDGAGTPYDKESTAIYKLN 1259
EDGAGTPYDKESTAI KLN
Sbjct: 301 EDGAGTPYDKESTAIIKLN 319
>ref|XP_002683737.1| PREDICTED: Ras-related GTP binding D, partial [Bos taurus].
Length = 350
Score = 543 bits (1399), Expect = e-154
Identities = 270/272 (99%), Positives = 271/272 (99%)
Frame = +3
Query: 444 LDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSF 623
LDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSF
Sbjct: 1 LDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSF 60
Query: 624 VNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT 803
VNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT
Sbjct: 61 VNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT 120
Query: 804 DINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAF 983
DINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAF
Sbjct: 121 DINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAF 180
Query: 984 SKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMI 1163
SKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMI
Sbjct: 181 SKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMI 240
Query: 1164 DVVIDLSCIYGLKEDGAGTPYDKESTAIYKLN 1259
DVVID+SCIYGLKEDGAGTPYDKESTAI KLN
Sbjct: 241 DVVIDISCIYGLKEDGAGTPYDKESTAIIKLN 272
>ref|NP_001069924.1| ras-related GTP-binding protein C [Bos taurus].
Length = 399
Score = 490 bits (1261), Expect = e-138
Identities = 239/261 (91%), Positives = 255/261 (97%)
Frame = +3
Query: 477 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQ 656
KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKI ++D+SNSSFVNFQIWDFPGQ
Sbjct: 61 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 120
Query: 657 IDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKV 836
+DFFDPTFDYEMIFRGTGALI+VID+QDDYMEAL RLH+TV++AYKVN D+NFEVFIHKV
Sbjct: 121 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKV 180
Query: 837 DGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQL 1016
DGLSDDHKIETQRDIHQRANDDLADAGLEK+HLSFYLTSIYDHSIFEAFSKVVQKLIPQL
Sbjct: 181 DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQL 240
Query: 1017 PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDLSCIYG 1196
PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDS+PVDMQ+YELCCDMIDVVID+SCIYG
Sbjct: 241 PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYG 300
Query: 1197 LKEDGAGTPYDKESTAIYKLN 1259
LKEDG+G+ YDKES AI KLN
Sbjct: 301 LKEDGSGSAYDKESMAIIKLN 321
>ref|XP_002685294.1| PREDICTED: Ras-related GTP binding A-like [Bos taurus].
Length = 313
Score = 77.8 bits (190), Expect = 2e-14
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 3/218 (1%)
Frame = +3
Query: 465 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 644
+T +K ++LLMG RSGK+S++ ++F +T L +T + V + +WD
Sbjct: 3 NTAMKKKVLLMGKSRSGKTSMRSIIFANYIACDTRRLGATINVEHSHVRFLGNLVLNLWD 62
Query: 645 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 815
GQ F + F + IFR LI+V D + +E + + A N D
Sbjct: 63 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNAPDAKI 122
Query: 816 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 995
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 123 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 177
Query: 996 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 1109
+LIP + LE L F ++ LF+ + + I+
Sbjct: 178 YQLIPNVQQLEMNLGNFAQIIEADEVLLFERATFLVIS 215
>ref|XP_871161.1| PREDICTED: Ras-related GTP binding A [Bos taurus].
Length = 313
Score = 77.8 bits (190), Expect = 2e-14
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 3/218 (1%)
Frame = +3
Query: 465 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 644
+T +K ++LLMG RSGK+S++ ++F +T L +T + V + +WD
Sbjct: 3 NTAMKKKVLLMGKSRSGKTSMRSIIFANYIACDTRRLGATINVEHSHVRFLGNLVLNLWD 62
Query: 645 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 815
GQ F + F + IFR LI+V D + +E + + A N D
Sbjct: 63 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNAPDAKI 122
Query: 816 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 995
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 123 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 177
Query: 996 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 1109
+LIP + LE L F ++ LF+ + + I+
Sbjct: 178 YQLIPNVQQLEMNLGNFAQIIEADEVLLFERATFLVIS 215
>ref|NP_001030576.1| ras-related GTP-binding protein A [Bos taurus].
Length = 313
Score = 76.3 bits (186), Expect = 5e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 3/218 (1%)
Frame = +3
Query: 465 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 644
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 3 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 62
Query: 645 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 815
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 63 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 122
Query: 816 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 995
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 123 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 177
Query: 996 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 1109
+LIP + LE L F ++ LF+ + + I+
Sbjct: 178 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 215
>ref|XP_001790341.2| PREDICTED: Ras-related GTP binding A [Bos taurus].
Length = 369
Score = 76.3 bits (186), Expect = 5e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 3/218 (1%)
Frame = +3
Query: 465 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 644
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 59 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 118
Query: 645 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 815
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 119 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 178
Query: 816 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 995
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 179 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 233
Query: 996 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 1109
+LIP + LE L F ++ LF+ + + I+
Sbjct: 234 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 271
>ref|NP_001068747.1| ras-related GTP-binding protein B [Bos taurus].
Length = 374
Score = 68.2 bits (165), Expect = 1e-11
Identities = 64/259 (24%), Positives = 114/259 (44%), Gaps = 31/259 (11%)
Frame = +3
Query: 426 GAEEGVLDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVF-------------------HK 548
G EG L + P +T +K ++LLMG SGK+S++ ++ H
Sbjct: 24 GEPEGSLGWVLP-NTAMKKKVLLMGKSGSGKTSMRSIILANYIARDTRRLGATILDRLHS 82
Query: 549 MSPNETL----FLESTNKICREDVSNSSF-----VNFQIWDFPGQIDFFDPTFDYEM--I 695
+ N +L ++S DV +S + +WD GQ F + F + I
Sbjct: 83 LQINSSLSTYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNI 142
Query: 696 FRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINFEVFIHKVDGLSDDHKIETQ 872
FR LI+V D + +E + + A N+ D +HK+D + +D Q
Sbjct: 143 FRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQED-----Q 197
Query: 873 RDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFIS 1052
RD+ + ++ + S + TSI+D ++++A+S +V +LIP + LE L F
Sbjct: 198 RDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAE 257
Query: 1053 NSGIEKAFLFDVVSKIYIA 1109
++ LF+ + + I+
Sbjct: 258 IIEADEVLLFERATFLVIS 276
>ref|XP_002707883.1| PREDICTED: Rraga protein-like [Bos taurus].
Length = 347
Score = 52.0 bits (123), Expect = 1e-06
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Frame = +3
Query: 465 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 644
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 85 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 144
Query: 645 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 815
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 145 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 204
Query: 816 EVFIHKVDGLSDDHK 860
+HK D + +D +
Sbjct: 205 FCLVHKXDLVQEDQR 219
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,326,466
Number of extensions: 1043405
Number of successful extensions: 3175
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3156
Number of HSP's successfully gapped: 9
Length of query: 420
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 315
Effective length of database: 14,207,134
Effective search space: 4475247210
Effective search space used: 4475247210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007691
(1261 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532231.2| PREDICTED: similar to Ras-related GTP binding D... 546 e-155
Alignment gi|XP_549027.2| PREDICTED: similar to Ras-related GTP binding B... 79 1e-14
Alignment gi|XP_531945.2| PREDICTED: similar to Ras-related GTP-binding p... 76 6e-14
Alignment gi|XP_852073.1| PREDICTED: similar to Ras-related GTP binding B... 68 2e-11
Alignment gi|XP_864934.1| PREDICTED: similar to Ras-related GTP binding B... 49 8e-06
>ref|XP_532231.2| PREDICTED: similar to Ras-related GTP binding D [Canis familiaris].
Length = 415
Score = 546 bits (1407), Expect = e-155
Identities = 272/279 (97%), Positives = 274/279 (98%)
Frame = +3
Query: 423 SGAEEGVLDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICRE 602
+G VLDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICRE
Sbjct: 59 AGGANPVLDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICRE 118
Query: 603 DVSNSSFVNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVT 782
DVSNSSFVNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVT
Sbjct: 119 DVSNSSFVNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVT 178
Query: 783 RAYKVNTDINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYD 962
RAYKVNTDINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYD
Sbjct: 179 RAYKVNTDINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYD 238
Query: 963 HSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTY 1142
HSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTY
Sbjct: 239 HSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTY 298
Query: 1143 ELCCDMIDVVIDLSCIYGLKEDGAGTPYDKESTAIYKLN 1259
ELCCDMIDVVID+SCIYGLKEDGAGTPYDKESTAI KLN
Sbjct: 299 ELCCDMIDVVIDISCIYGLKEDGAGTPYDKESTAIIKLN 337
>ref|XP_549027.2| PREDICTED: similar to Ras-related GTP binding B short isoform isoform
1 [Canis familiaris].
Length = 346
Score = 78.6 bits (192), Expect = 1e-14
Identities = 61/231 (26%), Positives = 110/231 (47%), Gaps = 3/231 (1%)
Frame = +3
Query: 426 GAEEGVLDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICRED 605
G EG L + P +T +K ++LLMG SGK+S++ ++F +T L +T +
Sbjct: 24 GEPEGSLGWVLP-NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSH 82
Query: 606 VSNSSFVNFQIWDFPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTV 779
V + +WD GQ F + F + IFR LI+V D + +E + +
Sbjct: 83 VRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSC 142
Query: 780 TRAYKVNT-DINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSI 956
A N+ D +HK+D + +D QRD+ + ++ + + + TSI
Sbjct: 143 LEAILQNSPDAKIFCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSI 197
Query: 957 YDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 1109
+D ++++A+S +V +LIP + LE L F ++ LF+ + + I+
Sbjct: 198 WDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVIS 248
>ref|XP_531945.2| PREDICTED: similar to Ras-related GTP-binding protein ragA [Canis
familiaris].
Length = 411
Score = 76.3 bits (186), Expect = 6e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 3/218 (1%)
Frame = +3
Query: 465 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 644
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 101 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 160
Query: 645 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 815
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 161 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 220
Query: 816 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 995
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 221 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 275
Query: 996 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 1109
+LIP + LE L F ++ LF+ + + I+
Sbjct: 276 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 313
>ref|XP_852073.1| PREDICTED: similar to Ras-related GTP binding B long isoform isoform
2 [Canis familiaris].
Length = 374
Score = 67.8 bits (164), Expect = 2e-11
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 31/259 (11%)
Frame = +3
Query: 426 GAEEGVLDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICRED 605
G EG L + P +T +K ++LLMG SGK+S++ ++F +T L +T
Sbjct: 24 GEPEGSLGWVLP-NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATILDRLHS 82
Query: 606 VS-NSSFVNFQI---------------------------WDFPGQIDFFDPTFDYEM--I 695
+ NSSF + + WD GQ F + F + I
Sbjct: 83 LQINSSFSTYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNI 142
Query: 696 FRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINFEVFIHKVDGLSDDHKIETQ 872
FR LI+V D + +E + + A N+ D +HK+D + +D Q
Sbjct: 143 FRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQED-----Q 197
Query: 873 RDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFIS 1052
RD+ + ++ + + + TSI+D ++++A+S +V +LIP + LE L F
Sbjct: 198 RDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAE 257
Query: 1053 NSGIEKAFLFDVVSKIYIA 1109
++ LF+ + + I+
Sbjct: 258 IIEADEVLLFERATFLVIS 276
>ref|XP_864934.1| PREDICTED: similar to Ras-related GTP binding B short isoform isoform
4 [Canis familiaris].
Length = 244
Score = 49.3 bits (116), Expect = 8e-06
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Frame = +3
Query: 675 TFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINFEVFIHKVDGLSD 851
T + IFR LI+V D + +E + + A N+ D +HK+D + +
Sbjct: 6 TSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQE 65
Query: 852 DHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLEN 1031
D QRD+ + ++ + + + TSI+D ++++A+S +V +LIP + LE
Sbjct: 66 D-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEM 120
Query: 1032 LLNIFISNSGIEKAFLFDVVSKIYIA 1109
L F ++ LF+ + + I+
Sbjct: 121 NLRNFAEIIEADEVLLFERATFLVIS 146
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,108,083
Number of extensions: 1043594
Number of successful extensions: 3150
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3130
Number of HSP's successfully gapped: 5
Length of query: 420
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 315
Effective length of database: 15,374,224
Effective search space: 4842880560
Effective search space used: 4842880560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007691
(1261 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081767.2| ras-related GTP-binding protein D [Mus musculus]. 587 e-168
Alignment gi|NP_059503.2| ras-related GTP-binding protein C [Mus musculus]. 491 e-139
Alignment gi|NP_848463.1| ras-related GTP-binding protein A [Mus musculus]. 76 5e-14
Alignment gi|NP_001004154.1| ras-related GTP-binding protein B [Mus muscu... 69 1e-11
>ref|NP_081767.2| ras-related GTP-binding protein D [Mus musculus].
Length = 399
Score = 587 bits (1514), Expect = e-168
Identities = 297/321 (92%), Positives = 302/321 (94%), Gaps = 3/321 (0%)
Frame = +3
Query: 306 MSQVLGKPQPXXXXXXXXXX---LVGLADYGDGPDSSDAERDSGAEEGVLDFSDPFSTEV 476
MSQVLGKPQP LVGLA Y DGP+SSDAE DSG EEGVLDFSDPFSTEV
Sbjct: 1 MSQVLGKPQPQGEDGGEDEEEDELVGLAGYEDGPESSDAELDSGPEEGVLDFSDPFSTEV 60
Query: 477 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQ 656
KPRILLMGLRRSGKSSIQKVVFHKMSP+ETLFLESTN+ICREDVSNSSFVNFQIWDFPGQ
Sbjct: 61 KPRILLMGLRRSGKSSIQKVVFHKMSPSETLFLESTNRICREDVSNSSFVNFQIWDFPGQ 120
Query: 657 IDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKV 836
IDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKV
Sbjct: 121 IDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKV 180
Query: 837 DGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQL 1016
DGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQL
Sbjct: 181 DGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQL 240
Query: 1017 PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDLSCIYG 1196
PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVID+SCIYG
Sbjct: 241 PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDISCIYG 300
Query: 1197 LKEDGAGTPYDKESTAIYKLN 1259
LKEDGAG PYDK+STAI KLN
Sbjct: 301 LKEDGAGAPYDKDSTAIIKLN 321
>ref|NP_059503.2| ras-related GTP-binding protein C [Mus musculus].
Length = 398
Score = 491 bits (1264), Expect = e-139
Identities = 245/293 (83%), Positives = 264/293 (90%), Gaps = 1/293 (0%)
Frame = +3
Query: 384 YGDGPDSSDAERDSGAEEGVLDFSDPFSTEV-KPRILLMGLRRSGKSSIQKVVFHKMSPN 560
YG + +A G G P + KPRILLMGLRRSGKSSIQKVVFHKMSPN
Sbjct: 28 YGVEEEEEEAAAGGGGGAGAGGGCGPGGADSSKPRILLMGLRRSGKSSIQKVVFHKMSPN 87
Query: 561 ETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQD 740
ETLFLESTNKI ++D+SNSSFVNFQIWDFPGQ+DFFDPTFDYEMIFRGTGALI+VID+QD
Sbjct: 88 ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD 147
Query: 741 DYMEALARLHLTVTRAYKVNTDINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 920
DYMEAL RLH+TV++AYKVN D+NFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL
Sbjct: 148 DYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 207
Query: 921 EKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKI 1100
EK+HLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKI
Sbjct: 208 EKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKI 267
Query: 1101 YIATDSTPVDMQTYELCCDMIDVVIDLSCIYGLKEDGAGTPYDKESTAIYKLN 1259
YIATDS+PVDMQ+YELCCDMIDVVID+SCIYGLKEDG+G+ YDKES AI KLN
Sbjct: 268 YIATDSSPVDMQSYELCCDMIDVVIDVSCIYGLKEDGSGSAYDKESMAIIKLN 320
>ref|NP_848463.1| ras-related GTP-binding protein A [Mus musculus].
Length = 313
Score = 76.3 bits (186), Expect = 5e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 3/218 (1%)
Frame = +3
Query: 465 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 644
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 3 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 62
Query: 645 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 815
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 63 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 122
Query: 816 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 995
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 123 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 177
Query: 996 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 1109
+LIP + LE L F ++ LF+ + + I+
Sbjct: 178 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 215
>ref|NP_001004154.1| ras-related GTP-binding protein B [Mus musculus].
Length = 374
Score = 68.6 bits (166), Expect = 1e-11
Identities = 63/259 (24%), Positives = 115/259 (44%), Gaps = 31/259 (11%)
Frame = +3
Query: 426 GAEEGVLDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVF-------------------HK 548
G EG L ++ P + +K ++LLMG SGK+S++ ++F H
Sbjct: 24 GEPEGSLGWAMP-NAAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATILDRIHS 82
Query: 549 MSPNETL----FLESTNKICREDVSNSSF-----VNFQIWDFPGQIDFFDPTFDYEM--I 695
+ N +L ++S DV +S + +WD GQ F + F + I
Sbjct: 83 LQINSSLSTYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNI 142
Query: 696 FRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINFEVFIHKVDGLSDDHKIETQ 872
FR LI+V D + +E + + A N+ + +HK+D + +D Q
Sbjct: 143 FRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQED-----Q 197
Query: 873 RDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFIS 1052
RD+ + ++ + S + TSI+D ++++A+S +V +LIP + LE L F
Sbjct: 198 RDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAE 257
Query: 1053 NSGIEKAFLFDVVSKIYIA 1109
++ LF+ + + I+
Sbjct: 258 IIEADEVLLFERATFLVIS 276
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,947,394
Number of extensions: 857020
Number of successful extensions: 2537
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2518
Number of HSP's successfully gapped: 4
Length of query: 420
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 316
Effective length of database: 12,493,815
Effective search space: 3948045540
Effective search space used: 3948045540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007691
(1261 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230552.1| ras-related GTP-binding protein D [Sus scrof... 611 e-175
Alignment gi|XP_003127849.1| PREDICTED: ras-related GTP-binding protein C... 490 e-139
Alignment gi|XP_001927072.2| PREDICTED: ras-related GTP-binding protein A... 76 3e-14
Alignment gi|XP_003135168.2| PREDICTED: ras-related GTP-binding protein B... 51 2e-06
Alignment gi|XP_003360384.1| PREDICTED: ras-related GTP-binding protein B... 50 2e-06
>ref|NP_001230552.1| ras-related GTP-binding protein D [Sus scrofa].
Length = 396
Score = 611 bits (1575), Expect = e-175
Identities = 306/318 (96%), Positives = 307/318 (96%)
Frame = +3
Query: 306 MSQVLGKPQPXXXXXXXXXXLVGLADYGDGPDSSDAERDSGAEEGVLDFSDPFSTEVKPR 485
MSQVLGKPQP LVGLADYGDGPDSSDAERDSGAEEGVLDFSDPFSTEVKPR
Sbjct: 1 MSQVLGKPQPEDEDDDEEDELVGLADYGDGPDSSDAERDSGAEEGVLDFSDPFSTEVKPR 60
Query: 486 ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDF 665
ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDF
Sbjct: 61 ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDF 120
Query: 666 FDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVDGL 845
FDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVDGL
Sbjct: 121 FDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVDGL 180
Query: 846 SDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTL 1025
SDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTL
Sbjct: 181 SDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTL 240
Query: 1026 ENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDLSCIYGLKE 1205
ENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVID+SCIYGLKE
Sbjct: 241 ENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDISCIYGLKE 300
Query: 1206 DGAGTPYDKESTAIYKLN 1259
DGAGTPYDKESTAI KLN
Sbjct: 301 DGAGTPYDKESTAIIKLN 318
>ref|XP_003127849.1| PREDICTED: ras-related GTP-binding protein C [Sus scrofa].
Length = 399
Score = 490 bits (1261), Expect = e-139
Identities = 239/261 (91%), Positives = 255/261 (97%)
Frame = +3
Query: 477 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQ 656
KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKI ++D+SNSSFVNFQIWDFPGQ
Sbjct: 61 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 120
Query: 657 IDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKV 836
+DFFDPTFDYEMIFRGTGALI+VID+QDDYMEAL RLH+TV++AYKVN D+NFEVFIHKV
Sbjct: 121 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKV 180
Query: 837 DGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQL 1016
DGLSDDHKIETQRDIHQRANDDLADAGLEK+HLSFYLTSIYDHSIFEAFSKVVQKLIPQL
Sbjct: 181 DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQL 240
Query: 1017 PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDLSCIYG 1196
PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDS+PVDMQ+YELCCDMIDVVID+SCIYG
Sbjct: 241 PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYG 300
Query: 1197 LKEDGAGTPYDKESTAIYKLN 1259
LKEDG+G+ YDKES AI KLN
Sbjct: 301 LKEDGSGSAYDKESMAIIKLN 321
>ref|XP_001927072.2| PREDICTED: ras-related GTP-binding protein A-like [Sus scrofa].
Length = 516
Score = 76.3 bits (186), Expect = 3e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 3/218 (1%)
Frame = +3
Query: 465 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 644
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 206 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 265
Query: 645 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 815
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 266 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 325
Query: 816 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 995
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 326 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 380
Query: 996 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 1109
+LIP + LE L F ++ LF+ + + I+
Sbjct: 381 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 418
>ref|XP_003135168.2| PREDICTED: ras-related GTP-binding protein B-like [Sus scrofa].
Length = 421
Score = 50.8 bits (120), Expect = 2e-06
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Frame = +3
Query: 651 GQIDFFDPTFDYEM--IFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINFEV 821
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 173 GQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFC 232
Query: 822 FIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQK 1001
+HK+D + +D QRD+ + ++ + S + TSI+D ++++A+S +V +
Sbjct: 233 LVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQ 287
Query: 1002 LIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 1109
LIP + LE L F ++ LF+ + + I+
Sbjct: 288 LIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVIS 323
>ref|XP_003360384.1| PREDICTED: ras-related GTP-binding protein B-like [Sus scrofa].
Length = 280
Score = 50.4 bits (119), Expect = 2e-06
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Frame = +3
Query: 675 TFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINFEVFIHKVDGLSD 851
T + IFR LI+V D + +E + + A N+ D +HK+D + +
Sbjct: 42 TSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQE 101
Query: 852 DHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLEN 1031
D QRD+ + ++ + S + TSI+D ++++A+S +V +LIP + LE
Sbjct: 102 D-----QRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEM 156
Query: 1032 LLNIFISNSGIEKAFLFDVVSKIYIA 1109
L F ++ LF+ + + I+
Sbjct: 157 NLRNFAEIIEADEVLLFERATFLVIS 182
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,309,266
Number of extensions: 721811
Number of successful extensions: 2004
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1994
Number of HSP's successfully gapped: 5
Length of query: 420
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 318
Effective length of database: 8,804,438
Effective search space: 2799811284
Effective search space used: 2799811284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007691
(1261 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067067.1| ras-related GTP-binding protein D [Homo sapiens]. 600 e-171
Alignment gi|NP_071440.1| ras-related GTP-binding protein C [Homo sapiens]. 490 e-138
Alignment gi|NP_006055.3| ras-related GTP-binding protein B short isoform... 80 5e-15
Alignment gi|NP_006561.1| ras-related GTP-binding protein A [Homo sapiens]. 76 6e-14
Alignment gi|NP_057740.2| ras-related GTP-binding protein B long isoform ... 70 3e-12
>ref|NP_067067.1| ras-related GTP-binding protein D [Homo sapiens].
Length = 400
Score = 600 bits (1546), Expect = e-171
Identities = 303/322 (94%), Positives = 305/322 (94%), Gaps = 4/322 (1%)
Frame = +3
Query: 306 MSQVLGKPQPXXXXXXXXXX----LVGLADYGDGPDSSDAERDSGAEEGVLDFSDPFSTE 473
MSQVLGKPQP LVGLADYGDGPDSSDA+ DSG EEGVLDFSDPFSTE
Sbjct: 1 MSQVLGKPQPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSDPFSTE 60
Query: 474 VKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPG 653
VKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPG
Sbjct: 61 VKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPG 120
Query: 654 QIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHK 833
QIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHK
Sbjct: 121 QIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHK 180
Query: 834 VDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQ 1013
VDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQ
Sbjct: 181 VDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQ 240
Query: 1014 LPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDLSCIY 1193
LPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVID+SCIY
Sbjct: 241 LPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDISCIY 300
Query: 1194 GLKEDGAGTPYDKESTAIYKLN 1259
GLKEDGAGTPYDKESTAI KLN
Sbjct: 301 GLKEDGAGTPYDKESTAIIKLN 322
>ref|NP_071440.1| ras-related GTP-binding protein C [Homo sapiens].
Length = 399
Score = 490 bits (1261), Expect = e-138
Identities = 239/261 (91%), Positives = 255/261 (97%)
Frame = +3
Query: 477 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQ 656
KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKI ++D+SNSSFVNFQIWDFPGQ
Sbjct: 61 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 120
Query: 657 IDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKV 836
+DFFDPTFDYEMIFRGTGALI+VID+QDDYMEAL RLH+TV++AYKVN D+NFEVFIHKV
Sbjct: 121 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKV 180
Query: 837 DGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQL 1016
DGLSDDHKIETQRDIHQRANDDLADAGLEK+HLSFYLTSIYDHSIFEAFSKVVQKLIPQL
Sbjct: 181 DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQL 240
Query: 1017 PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDLSCIYG 1196
PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDS+PVDMQ+YELCCDMIDVVID+SCIYG
Sbjct: 241 PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYG 300
Query: 1197 LKEDGAGTPYDKESTAIYKLN 1259
LKEDG+G+ YDKES AI KLN
Sbjct: 301 LKEDGSGSAYDKESMAIIKLN 321
>ref|NP_006055.3| ras-related GTP-binding protein B short isoform [Homo sapiens].
Length = 346
Score = 79.7 bits (195), Expect = 5e-15
Identities = 62/231 (26%), Positives = 110/231 (47%), Gaps = 3/231 (1%)
Frame = +3
Query: 426 GAEEGVLDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICRED 605
G EG L + P +T +K ++LLMG SGK+S++ ++F +T L +T +
Sbjct: 24 GEPEGSLGWVLP-NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSH 82
Query: 606 VSNSSFVNFQIWDFPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTV 779
V + +WD GQ F + F + IFR LI+V D + +E + +
Sbjct: 83 VRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSC 142
Query: 780 TRAYKVNT-DINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSI 956
A N+ D +HK+D + +D QRD+ + ++ + S + TSI
Sbjct: 143 LEAILQNSPDAKIFCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECSCFRTSI 197
Query: 957 YDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 1109
+D ++++A+S +V +LIP + LE L F ++ LF+ + + I+
Sbjct: 198 WDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVIS 248
>ref|NP_006561.1| ras-related GTP-binding protein A [Homo sapiens].
Length = 313
Score = 76.3 bits (186), Expect = 6e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 3/218 (1%)
Frame = +3
Query: 465 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 644
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 3 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 62
Query: 645 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 815
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 63 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 122
Query: 816 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 995
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 123 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 177
Query: 996 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 1109
+LIP + LE L F ++ LF+ + + I+
Sbjct: 178 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 215
>ref|NP_057740.2| ras-related GTP-binding protein B long isoform [Homo sapiens].
Length = 374
Score = 70.5 bits (171), Expect = 3e-12
Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 31/259 (11%)
Frame = +3
Query: 426 GAEEGVLDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVF-------------------HK 548
G EG L + P +T +K ++LLMG SGK+S++ ++F H
Sbjct: 24 GEPEGSLGWVLP-NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATILDRIHS 82
Query: 549 MSPNETL----FLESTNKICREDVSNSSF-----VNFQIWDFPGQIDFFDPTFDYEM--I 695
+ N +L ++S DV +S + +WD GQ F + F + I
Sbjct: 83 LQINSSLSTYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNI 142
Query: 696 FRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINFEVFIHKVDGLSDDHKIETQ 872
FR LI+V D + +E + + A N+ D +HK+D + +D Q
Sbjct: 143 FRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQED-----Q 197
Query: 873 RDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFIS 1052
RD+ + ++ + S + TSI+D ++++A+S +V +LIP + LE L F
Sbjct: 198 RDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAE 257
Query: 1053 NSGIEKAFLFDVVSKIYIA 1109
++ LF+ + + I+
Sbjct: 258 IIEADEVLLFERATFLVIS 276
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,216,352
Number of extensions: 1022868
Number of successful extensions: 3034
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3018
Number of HSP's successfully gapped: 5
Length of query: 420
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 315
Effective length of database: 14,835,944
Effective search space: 4673322360
Effective search space used: 4673322360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007691
(1261 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 628 e-177
Sscrofa_Chr06 119 4e-24
>Sscrofa_Chr01
|| Length = 315321322
Score = 628 bits (317), Expect = e-177
Identities = 317/317 (100%)
Strand = Plus / Minus
Query: 125 tgggaactgcgggacccggacctggacgccgaccgccgcgggggacgcgcggtccccgcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64199243 tgggaactgcgggacccggacctggacgccgaccgccgcgggggacgcgcggtccccgcc 64199184
Query: 185 tctgcccgcgaacctccagacaaaaccctaattcagaaataggttgtgagccgcaggcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64199183 tctgcccgcgaacctccagacaaaaccctaattcagaaataggttgtgagccgcaggcca 64199124
Query: 245 gaaggtttggccctcccactagggacccctgccgcccccgggacggacgaccgagggcgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64199123 gaaggtttggccctcccactagggacccctgccgcccccgggacggacgaccgagggcgc 64199064
Query: 305 gatgagccaggtgctggggaagccgcagccggaggacgaggacgacgacgaggaggatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64199063 gatgagccaggtgctggggaagccgcagccggaggacgaggacgacgacgaggaggatga 64199004
Query: 365 actggtggggttagcggactacggggacgggcccgactcctcggacgccgagcgggacag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64199003 actggtggggttagcggactacggggacgggcccgactcctcggacgccgagcgggacag 64198944
Query: 425 cggggcggaggagggag 441
|||||||||||||||||
Sbjct: 64198943 cggggcggaggagggag 64198927
Score = 628 bits (317), Expect = e-177
Identities = 317/317 (100%)
Strand = Plus / Minus
Query: 125 tgggaactgcgggacccggacctggacgccgaccgccgcgggggacgcgcggtccccgcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64276466 tgggaactgcgggacccggacctggacgccgaccgccgcgggggacgcgcggtccccgcc 64276407
Query: 185 tctgcccgcgaacctccagacaaaaccctaattcagaaataggttgtgagccgcaggcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64276406 tctgcccgcgaacctccagacaaaaccctaattcagaaataggttgtgagccgcaggcca 64276347
Query: 245 gaaggtttggccctcccactagggacccctgccgcccccgggacggacgaccgagggcgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64276346 gaaggtttggccctcccactagggacccctgccgcccccgggacggacgaccgagggcgc 64276287
Query: 305 gatgagccaggtgctggggaagccgcagccggaggacgaggacgacgacgaggaggatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64276286 gatgagccaggtgctggggaagccgcagccggaggacgaggacgacgacgaggaggatga 64276227
Query: 365 actggtggggttagcggactacggggacgggcccgactcctcggacgccgagcgggacag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64276226 actggtggggttagcggactacggggacgggcccgactcctcggacgccgagcgggacag 64276167
Query: 425 cggggcggaggagggag 441
|||||||||||||||||
Sbjct: 64276166 cggggcggaggagggag 64276150
Score = 593 bits (299), Expect = e-167
Identities = 299/299 (100%)
Strand = Plus / Minus
Query: 440 agttctggacttcagtgaccccttcagcacagaggtgaagcccaggatcctgctcatggg 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64179058 agttctggacttcagtgaccccttcagcacagaggtgaagcccaggatcctgctcatggg 64178999
Query: 500 gctgaggaggagcggcaagtcatccatccagaaagtcgtctttcataagatgtctcccaa 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64178998 gctgaggaggagcggcaagtcatccatccagaaagtcgtctttcataagatgtctcccaa 64178939
Query: 560 cgaaaccctcttcttggagagcacgaacaagatctgccgggaggacgtttccaacagctc 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64178938 cgaaaccctcttcttggagagcacgaacaagatctgccgggaggacgtttccaacagctc 64178879
Query: 620 ctttgtaaattttcagatttgggacttcccaggacagattgacttttttgaccctacctt 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64178878 ctttgtaaattttcagatttgggacttcccaggacagattgacttttttgaccctacctt 64178819
Query: 680 tgactatgagatgatcttccggggaacaggagcactgatatttgtcatagactcccagg 738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64178818 tgactatgagatgatcttccggggaacaggagcactgatatttgtcatagactcccagg 64178760
Score = 593 bits (299), Expect = e-167
Identities = 299/299 (100%)
Strand = Plus / Minus
Query: 440 agttctggacttcagtgaccccttcagcacagaggtgaagcccaggatcctgctcatggg 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64254719 agttctggacttcagtgaccccttcagcacagaggtgaagcccaggatcctgctcatggg 64254660
Query: 500 gctgaggaggagcggcaagtcatccatccagaaagtcgtctttcataagatgtctcccaa 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64254659 gctgaggaggagcggcaagtcatccatccagaaagtcgtctttcataagatgtctcccaa 64254600
Query: 560 cgaaaccctcttcttggagagcacgaacaagatctgccgggaggacgtttccaacagctc 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64254599 cgaaaccctcttcttggagagcacgaacaagatctgccgggaggacgtttccaacagctc 64254540
Query: 620 ctttgtaaattttcagatttgggacttcccaggacagattgacttttttgaccctacctt 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64254539 ctttgtaaattttcagatttgggacttcccaggacagattgacttttttgaccctacctt 64254480
Query: 680 tgactatgagatgatcttccggggaacaggagcactgatatttgtcatagactcccagg 738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64254479 tgactatgagatgatcttccggggaacaggagcactgatatttgtcatagactcccagg 64254421
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 736 aggatgattacatggaggccctggccaggctccacctcacagtgaccagggcctacaaag 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64171639 aggatgattacatggaggccctggccaggctccacctcacagtgaccagggcctacaaag 64171580
Query: 796 tgaacaccgacatcaactttgaggtatttatacacaaagtggatggtctgtcagatgacc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64171579 tgaacaccgacatcaactttgaggtatttatacacaaagtggatggtctgtcagatgacc 64171520
Query: 856 acaaaattgaaacccaaagagatattcaccagagggcaaacgatgaccttgcagatgctg 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64171519 acaaaattgaaacccaaagagatattcaccagagggcaaacgatgaccttgcagatgctg 64171460
Query: 916 gattagaaaaaattcacctcag 937
||||||||||||||||||||||
Sbjct: 64171459 gattagaaaaaattcacctcag 64171438
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 736 aggatgattacatggaggccctggccaggctccacctcacagtgaccagggcctacaaag 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64245520 aggatgattacatggaggccctggccaggctccacctcacagtgaccagggcctacaaag 64245461
Query: 796 tgaacaccgacatcaactttgaggtatttatacacaaagtggatggtctgtcagatgacc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64245460 tgaacaccgacatcaactttgaggtatttatacacaaagtggatggtctgtcagatgacc 64245401
Query: 856 acaaaattgaaacccaaagagatattcaccagagggcaaacgatgaccttgcagatgctg 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64245400 acaaaattgaaacccaaagagatattcaccagagggcaaacgatgaccttgcagatgctg 64245341
Query: 916 gattagaaaaaattcacctcag 937
||||||||||||||||||||||
Sbjct: 64245340 gattagaaaaaattcacctcag 64245319
Score = 278 bits (140), Expect = 7e-72
Identities = 143/144 (99%)
Strand = Plus / Minus
Query: 1052 gaattctggaattgaaaaggcgtttctctttgatgtggtcagtaaaatttatattgcaac 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64168911 gaattctggaattgaaaaggcgtttctctttgatgtggtcagtaaaatttatattgcaac 64168852
Query: 1112 agatagtacccccgtggatatgcaaacttatgagctgtgctgtgatatgatcgatgtggt 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64168851 agatagtacccccgtggatatgcaaacttatgagctgtgctgtgatatgatcgatgtggt 64168792
Query: 1172 tattgacctttcttgtatttatgg 1195
||||||| ||||||||||||||||
Sbjct: 64168791 tattgacatttcttgtatttatgg 64168768
Score = 278 bits (140), Expect = 7e-72
Identities = 143/144 (99%)
Strand = Plus / Minus
Query: 1052 gaattctggaattgaaaaggcgtttctctttgatgtggtcagtaaaatttatattgcaac 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64242792 gaattctggaattgaaaaggcgtttctctttgatgtggtcagtaaaatttatattgcaac 64242733
Query: 1112 agatagtacccccgtggatatgcaaacttatgagctgtgctgtgatatgatcgatgtggt 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64242732 agatagtacccccgtggatatgcaaacttatgagctgtgctgtgatatgatcgatgtggt 64242673
Query: 1172 tattgacctttcttgtatttatgg 1195
||||||| ||||||||||||||||
Sbjct: 64242672 tattgacatttcttgtatttatgg 64242649
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 934 tcagcttttatctgacaagcatatatgaccattcaatatttgaagcttttagcaaagtgg 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64170249 tcagcttttatctgacaagcatatatgaccattcaatatttgaagcttttagcaaagtgg 64170190
Query: 994 ttcagaaactgattccacagctccccactctggagaatttgctaaacatctttatctcg 1052
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64170189 ttcagaaactgattccacagctccccactctggagaatttgctaaacatctttatctcg 64170131
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 934 tcagcttttatctgacaagcatatatgaccattcaatatttgaagcttttagcaaagtgg 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64244130 tcagcttttatctgacaagcatatatgaccattcaatatttgaagcttttagcaaagtgg 64244071
Query: 994 ttcagaaactgattccacagctccccactctggagaatttgctaaacatctttatctcg 1052
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64244070 ttcagaaactgattccacagctccccactctggagaatttgctaaacatctttatctcg 64244012
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 1 gtgtgtgtcaggtgacttgggtcacgcagtctctctctccctcctcgggggaggaactgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64199367 gtgtgtgtcaggtgacttgggtcacgcagtctctctctccctcctcgggggaggaactgc 64199308
Query: 61 cgcgctccggctgactcct 79
|||||||||||||||||||
Sbjct: 64199307 cgcgctccggctgactcct 64199289
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 1 gtgtgtgtcaggtgacttgggtcacgcagtctctctctccctcctcgggggaggaactgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64276590 gtgtgtgtcaggtgacttgggtcacgcagtctctctctccctcctcgggggaggaactgc 64276531
Query: 61 cgcgctccggctgactcct 79
|||||||||||||||||||
Sbjct: 64276530 cgcgctccggctgactcct 64276512
Score = 101 bits (51), Expect = 9e-19
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 1195 gtctcaaagaggatggagcaggaaccccctatgataaggaatcaacagccatttataagc 1254
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 64163599 gtctcaaagaagatggagcaggaaccccctatgataaggaatcaacagccattataaagc 64163540
Query: 1255 tgaataa 1261
|||||||
Sbjct: 64163539 tgaataa 64163533
>Sscrofa_Chr06
|| Length = 157765593
Score = 119 bits (60), Expect = 4e-24
Identities = 156/188 (82%)
Strand = Plus / Minus
Query: 540 tttcataagatgtctcccaacgaaaccctcttcttggagagcacgaacaagatctgccgg 599
|||||||| ||||| ||||| || |||||||| ||||| || || |||||||| | |
Sbjct: 87849606 tttcataaaatgtcgcccaatgagaccctctttttggaaagtaccaacaagatttacaaa 87849547
Query: 600 gaggacgtttccaacagctcctttgtaaattttcagatttgggacttcccaggacagatt 659
|| ||| |||| || ||||||||||| ||||| || || ||||| || || || || ||
Sbjct: 87849546 gatgacatttctaatagctcctttgtgaatttccaaatatgggattttcctgggcaaatg 87849487
Query: 660 gacttttttgaccctacctttgactatgagatgatcttccggggaacaggagcactgata 719
|||||||||||||| || ||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 87849486 gacttttttgacccaacttttgactatgagatgatcttcaggggaacaggagcattgata 87849427
Query: 720 tttgtcat 727
| ||||||
Sbjct: 87849426 tatgtcat 87849419
Score = 113 bits (57), Expect = 2e-22
Identities = 120/141 (85%)
Strand = Plus / Minus
Query: 786 gcctacaaagtgaacaccgacatcaactttgaggtatttatacacaaagtggatggtctg 845
||||||||||| || | ||||| || |||||||| ||||| |||||||| |||||||||
Sbjct: 87848397 gcctacaaagttaatccagacatgaattttgaggtttttattcacaaagttgatggtctg 87848338
Query: 846 tcagatgaccacaaaattgaaacccaaagagatattcaccagagggcaaacgatgacctt 905
|| ||||| |||||||| ||||| || || |||||||| || ||||| || |||||||||
Sbjct: 87848337 tctgatgatcacaaaatagaaacacagagggatattcatcaaagggccaatgatgacctt 87848278
Query: 906 gcagatgctggattagaaaaa 926
||||||||||| ||||||||
Sbjct: 87848277 gcagatgctgggctagaaaaa 87848257
Score = 79.8 bits (40), Expect = 3e-12
Identities = 118/144 (81%)
Strand = Plus / Minus
Query: 1052 gaattctggaattgaaaaggcgtttctctttgatgtggtcagtaaaatttatattgcaac 1111
|||||| || |||||||| || |||||||| ||||| ||||| ||||| || ||||||||
Sbjct: 87844288 gaattcaggtattgaaaaagcttttctcttcgatgttgtcagcaaaatctacattgcaac 87844229
Query: 1112 agatagtacccccgtggatatgcaaacttatgagctgtgctgtgatatgatcgatgtggt 1171
|| ||| | || ||||||||||| ||||||| || |||||||| ||||| ||||| ||
Sbjct: 87844228 cgacagttctcctgtggatatgcagtcttatgaactttgctgtgacatgattgatgttgt 87844169
Query: 1172 tattgacctttcttgtatttatgg 1195
||||| | |||||||| |||||
Sbjct: 87844168 aattgatgtgtcttgtatatatgg 87844145
Score = 77.8 bits (39), Expect = 1e-11
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 934 tcagcttttatctgacaagcatatatgaccattcaatatttgaagcttttagcaaagtgg 993
||||||||||| |||| || || ||||||||||||||||||||||| || || || ||||
Sbjct: 87845422 tcagcttttatttgactagtatctatgaccattcaatatttgaagccttcagtaaggtgg 87845363
Query: 994 ttcagaaactgattccaca 1012
| |||||||| ||||||||
Sbjct: 87845362 tgcagaaacttattccaca 87845344
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,753,161
Number of extensions: 336
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 17
Length of query: 1261
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1240
Effective length of database: 2,808,413,156
Effective search space: 3482432313440
Effective search space used: 3482432313440
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)