Animal-Genome cDNA 20110601C-007708

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007708
         (3201 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001093329.1| eukaryotic translation initiation factor 4 g...  1482   0.0  
Alignment   gi|XP_002684920.1| PREDICTED: eIF4GI protein isoform 2 [Bos tau...   179   1e-44
Alignment   gi|XP_002684919.1| PREDICTED: eIF4GI protein isoform 1 [Bos tau...   179   1e-44
Alignment   gi|XP_585239.5| PREDICTED: eIF4GI protein [Bos taurus].              179   1e-44

>ref|NP_001093329.1| eukaryotic translation initiation factor 4 gamma 2 [Bos taurus].
          Length = 907

 Score = 1482 bits (3837), Expect = 0.0
 Identities = 760/889 (85%), Positives = 761/889 (85%)
 Frame = +3

Query: 324  VESAIAEXXXXXXXXXXXXXXXXXXPQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD 503
            +ESAIAE                  PQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD
Sbjct: 1    MESAIAEGGASRFSASSGGGGSRGAPQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD 60

Query: 504  XXXXXXXXXEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXD 683
                     EKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVES            D
Sbjct: 61   NSAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVD 120

Query: 684  KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR 863
            KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR
Sbjct: 121  KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR 180

Query: 864  NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK 1043
            NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK
Sbjct: 181  NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK 240

Query: 1044 RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD 1223
            RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD
Sbjct: 241  RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD 300

Query: 1224 TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR 1403
            TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR
Sbjct: 301  TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR 360

Query: 1404 MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS 1583
            MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS
Sbjct: 361  MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS 420

Query: 1584 QFGEMGGKFMKSQGLSQLYHNXXXXXXXXXXXXXKDMPPRFSKKGQLNADEISLRPAQSF 1763
            QFGEMGGKFMKSQGLSQLYHN             KDMPPRFSKKGQLNADEISLRPAQSF
Sbjct: 421  QFGEMGGKFMKSQGLSQLYHNQSQGLLSQLQGQSKDMPPRFSKKGQLNADEISLRPAQSF 480

Query: 1764 LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQEXXXXXXXXXXXX 1943
            LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQE            
Sbjct: 481  LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQEKPAKTSKKPPPS 540

Query: 1944 XXXXXXXXXXXXXXXXNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 2123
                            NSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA
Sbjct: 541  KEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 600

Query: 2124 SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE 2303
            SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE
Sbjct: 601  SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE 660

Query: 2304 LAQPLESGTHFPXXXXXXXXXXXXXDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE 2483
            LAQPLESGTHFP             DREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE
Sbjct: 661  LAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE 720

Query: 2484 XXXXXXXXXXXXXXXXXXXXXXXDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 2663
                                   DPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI
Sbjct: 721  GKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 780

Query: 2664 SSEVNPPSDETDSSSAPSXXXXXXXXXXXXSFKPVMQKFLHDHVDLQVSALYALQVHCYN 2843
            SSEVNPPSDETDSSSAPS            SFKPVMQKFLHDHVDLQVSALYALQVHCYN
Sbjct: 781  SSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYN 840

Query: 2844 SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ 2990
            SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ
Sbjct: 841  SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ 889


>ref|XP_002684920.1| PREDICTED: eIF4GI protein isoform 2 [Bos taurus].
          Length = 1600

 Score =  179 bits (455), Expect = 1e-44
 Identities = 110/297 (37%), Positives = 167/297 (56%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 760  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 819

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 820  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 871

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R IA+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 872  ATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 929

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 930  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 984

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR+ +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 985  LRKSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 1039


>ref|XP_002684919.1| PREDICTED: eIF4GI protein isoform 1 [Bos taurus].
          Length = 1513

 Score =  179 bits (455), Expect = 1e-44
 Identities = 110/297 (37%), Positives = 167/297 (56%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 673  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 732

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 733  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 784

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R IA+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 785  ATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 842

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 843  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 897

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR+ +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 898  LRKSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 952


>ref|XP_585239.5| PREDICTED: eIF4GI protein [Bos taurus].
          Length = 1439

 Score =  179 bits (455), Expect = 1e-44
 Identities = 110/297 (37%), Positives = 167/297 (56%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 599  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 658

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 659  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 710

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R IA+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 711  ATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 768

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 769  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 823

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR+ +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 824  LRKSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 878


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 105,401,673
Number of extensions: 2561340
Number of successful extensions: 8514
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8371
Number of HSP's successfully gapped: 4
Length of query: 1067
Length of database: 17,681,374
Length adjustment: 113
Effective length of query: 954
Effective length of database: 13,942,430
Effective search space: 13301078220
Effective search space used: 13301078220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007708
         (3201 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_851579.1| PREDICTED: similar to Eukaryotic translation in...  1163   0.0  
Alignment   gi|XP_864039.1| PREDICTED: similar to Eukaryotic translation in...   682   0.0  
Alignment   gi|XP_534057.2| PREDICTED: similar to Eukaryotic translation in...   469   e-132
Alignment   gi|XP_863984.1| PREDICTED: similar to Eukaryotic translation in...   469   e-132
Alignment   gi|XP_863942.1| PREDICTED: similar to Eukaryotic translation in...   358   1e-98
Alignment   gi|XP_863960.1| PREDICTED: similar to Eukaryotic translation in...   257   6e-68
Alignment   gi|XP_535377.2| PREDICTED: similar to eukaryotic translation in...   176   2e-43

>ref|XP_851579.1| PREDICTED: similar to Eukaryotic translation initiation factor 4
            gamma 2 (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Death
            associated protein 5) (DAP-5) isoform 2 [Canis
            familiaris].
          Length = 701

 Score = 1163 bits (3009), Expect = 0.0
 Identities = 593/683 (86%), Positives = 594/683 (86%)
 Frame = +3

Query: 942  MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 1121
            MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD
Sbjct: 1    MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 60

Query: 1122 HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 1301
            HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI
Sbjct: 61   HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 120

Query: 1302 RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG 1481
            RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG
Sbjct: 121  RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG 180

Query: 1482 PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQGLSQLYHNXXXXX 1661
            PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQGLSQLYHN     
Sbjct: 181  PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQGLSQLYHNQSQGL 240

Query: 1662 XXXXXXXXKDMPPRFSKKGQLNADEISLRPAQSFLMNKNQVPKLQPQITMIPPSAQPPRT 1841
                    KDMPPRFSKKGQLNADEISLRPAQSFLMNKNQVPKLQPQITMIPPSAQPPRT
Sbjct: 241  LSQLQGQSKDMPPRFSKKGQLNADEISLRPAQSFLMNKNQVPKLQPQITMIPPSAQPPRT 300

Query: 1842 QTPPLGQTPQLGLKTNPPLIQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSGNANEAVN 2021
            QTPPLGQTPQLGLKTNPPLIQE                            NSGNANEAV+
Sbjct: 301  QTPPLGQTPQLGLKTNPPLIQEKPAKTSKKPPPSKEELLKLTETVVTEYLNSGNANEAVS 360

Query: 2022 GVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 2201
            GVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL
Sbjct: 361  GVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 420

Query: 2202 DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPXXXXXXXXXXXXXD 2381
            DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFP             D
Sbjct: 421  DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQD 480

Query: 2382 REWLTELFQQSKVNMQKMLPEIDQNKDRMLEILEXXXXXXXXXXXXXXXXXXXXXXXDPS 2561
            REWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE                       DPS
Sbjct: 481  REWLTELFQQSKVNMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPS 540

Query: 2562 PQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSXXXXXXXX 2741
            PQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPS        
Sbjct: 541  PQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEK 600

Query: 2742 XXXXSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAF 2921
                SFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAF
Sbjct: 601  QLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAF 660

Query: 2922 LAWKEDITQEFPGKGKALFQVNQ 2990
            LAWKEDITQEFPGKGKALFQVNQ
Sbjct: 661  LAWKEDITQEFPGKGKALFQVNQ 683


>ref|XP_864039.1| PREDICTED: similar to Eukaryotic translation initiation factor 4
            gamma 2 (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Death
            associated protein 5) (DAP-5) isoform 6 [Canis
            familiaris].
          Length = 451

 Score =  682 bits (1760), Expect = 0.0
 Identities = 356/433 (82%), Positives = 357/433 (82%)
 Frame = +3

Query: 1692 MPPRFSKKGQLNADEISLRPAQSFLMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQ 1871
            MPPRFSKKGQLNADEISLRPAQSFLMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQ
Sbjct: 1    MPPRFSKKGQLNADEISLRPAQSFLMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQ 60

Query: 1872 LGLKTNPPLIQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSGNANEAVNGVREMRAPKH 2051
            LGLKTNPPLIQE                            NSGNANEAV+GVREMRAPKH
Sbjct: 61   LGLKTNPPLIQEKPAKTSKKPPPSKEELLKLTETVVTEYLNSGNANEAVSGVREMRAPKH 120

Query: 2052 FLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDI 2231
            FLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDI
Sbjct: 121  FLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDI 180

Query: 2232 PLVKSYLAQFAARAIISELVSISELAQPLESGTHFPXXXXXXXXXXXXXDREWLTELFQQ 2411
            PLVKSYLAQFAARAIISELVSISELAQPLESGTHFP             DREWLTELFQQ
Sbjct: 181  PLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQ 240

Query: 2412 SKVNMQKMLPEIDQNKDRMLEILEXXXXXXXXXXXXXXXXXXXXXXXDPSPQTIYKWIKD 2591
            SKVNMQKMLPEIDQNKDRMLEILE                       DPSPQTIYKWIKD
Sbjct: 241  SKVNMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKD 300

Query: 2592 NISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSXXXXXXXXXXXXSFKPVM 2771
            NISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPS            SFKPVM
Sbjct: 301  NISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVM 360

Query: 2772 QKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQE 2951
            QKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQE
Sbjct: 361  QKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQE 420

Query: 2952 FPGKGKALFQVNQ 2990
            FPGKGKALFQVNQ
Sbjct: 421  FPGKGKALFQVNQ 433


>ref|XP_534057.2| PREDICTED: similar to Eukaryotic translation initiation factor 4
            gamma 2 (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Death
            associated protein 5) (DAP-5) isoform 1 [Canis
            familiaris].
          Length = 231

 Score =  469 bits (1207), Expect = e-132
 Identities = 227/227 (100%), Positives = 227/227 (100%)
 Frame = +3

Query: 942  MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 1121
            MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD
Sbjct: 1    MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 60

Query: 1122 HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 1301
            HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI
Sbjct: 61   HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 120

Query: 1302 RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG 1481
            RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG
Sbjct: 121  RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG 180

Query: 1482 PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQ 1622
            PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQ
Sbjct: 181  PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQ 227


>ref|XP_863984.1| PREDICTED: similar to Eukaryotic translation initiation factor 4
            gamma 2 (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Death
            associated protein 5) (DAP-5) isoform 5 [Canis
            familiaris].
          Length = 231

 Score =  469 bits (1207), Expect = e-132
 Identities = 227/227 (100%), Positives = 227/227 (100%)
 Frame = +3

Query: 942  MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 1121
            MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD
Sbjct: 1    MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 60

Query: 1122 HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 1301
            HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI
Sbjct: 61   HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 120

Query: 1302 RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG 1481
            RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG
Sbjct: 121  RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG 180

Query: 1482 PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQ 1622
            PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQ
Sbjct: 181  PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQ 227


>ref|XP_863942.1| PREDICTED: similar to Eukaryotic translation initiation factor 4
            gamma 2 (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Death
            associated protein 5) (DAP-5) isoform 3 [Canis
            familiaris].
          Length = 184

 Score =  358 bits (920), Expect = 1e-98
 Identities = 174/177 (98%), Positives = 175/177 (98%)
 Frame = +3

Query: 942  MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 1121
            MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD
Sbjct: 1    MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 60

Query: 1122 HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 1301
            HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI
Sbjct: 61   HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 120

Query: 1302 RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGI 1472
            RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPG  +
Sbjct: 121  RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGESV 177


>ref|XP_863960.1| PREDICTED: similar to Eukaryotic translation initiation factor 4
            gamma 2 (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel
            APOBEC-1 target 1) (Translation repressor NAT1) isoform 4
            [Canis familiaris].
          Length = 129

 Score =  257 bits (656), Expect = 6e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +3

Query: 942  MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 1121
            MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD
Sbjct: 1    MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 60

Query: 1122 HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 1301
            HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI
Sbjct: 61   HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 120

Query: 1302 RQDAVK 1319
            RQDAVK
Sbjct: 121  RQDAVK 126


>ref|XP_535377.2| PREDICTED: similar to eukaryotic translation initiation factor 4
            gamma, 3 [Canis familiaris].
          Length = 1722

 Score =  176 bits (445), Expect = 2e-43
 Identities = 110/298 (36%), Positives = 169/298 (56%), Gaps = 12/298 (4%)
 Frame = +3

Query: 456  QNAQKWIPARSTRRDDXXXXXXXXXEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVG 635
            +NA K    R ++ +D         E  +   +FRKVR ILNKLTP+ F++L  ++  + 
Sbjct: 870  ENAWKPSQKRDSQAEDP--------ENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLT 921

Query: 636  VESXXXXXXXXXXXXDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFR 815
            V++            +KA++EP +S  YA +C  L         P A+ +PG   +  FR
Sbjct: 922  VDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLV----TLKVPMAD-KPGN--TVNFR 974

Query: 816  RLLISKLQDEFENRTRNVDVYDKRENPL----LPEE--------EEQRAIAKIKMLGNIK 959
            +LL+++ Q EFE    + DV++K++  L     PEE        EE +  A+ + +GNIK
Sbjct: 975  KLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEEKTRLHDELEEAKDKARRRSIGNIK 1034

Query: 960  FIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLDHERAKS 1139
            FIGEL KL ++ E+I+H C+  LL+           E LECLC+++ T+G  LD E+AK 
Sbjct: 1035 FIGELFKLKMLTEAIMHDCVVKLLKNHDE-------ESLECLCRLLTTIGRDLDFEKAKP 1087

Query: 1140 LMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDA 1313
             MDQYF +M  ++  ++  +RIRF+LQD ++LR  +WV R+A  D GPKTI QI ++A
Sbjct: 1088 RMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRA--DQGPKTIEQIHKEA 1143


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 109,901,233
Number of extensions: 2594723
Number of successful extensions: 8969
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 8810
Number of HSP's successfully gapped: 7
Length of query: 1067
Length of database: 18,874,504
Length adjustment: 113
Effective length of query: 954
Effective length of database: 15,107,536
Effective search space: 14412589344
Effective search space used: 14412589344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007708
         (3201 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_038535.2| eukaryotic translation initiation factor 4 gamm...  1466   0.0  
Alignment   gi|NP_001035221.1| eukaryotic translation initiation factor 4 g...  1400   0.0  
Alignment   gi|NP_001005331.1| eukaryotic translation initiation factor 4 g...   177   4e-44
Alignment   gi|NP_666053.2| eukaryotic translation initiation factor 4 gamm...   177   4e-44
Alignment   gi|NP_766291.2| eukaryotic translation initiation factor 4 gamm...   176   8e-44

>ref|NP_038535.2| eukaryotic translation initiation factor 4 gamma 2 isoform 1 [Mus
            musculus].
          Length = 906

 Score = 1466 bits (3795), Expect = 0.0
 Identities = 753/889 (84%), Positives = 760/889 (85%)
 Frame = +3

Query: 324  VESAIAEXXXXXXXXXXXXXXXXXXPQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD 503
            +ESAIAE                  PQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD
Sbjct: 1    MESAIAEGGASRFSASSGGGGSRGAPQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD 60

Query: 504  XXXXXXXXXEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXD 683
                     EKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVES            D
Sbjct: 61   NSAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVD 120

Query: 684  KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR 863
            KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR
Sbjct: 121  KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR 180

Query: 864  NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK 1043
            NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK
Sbjct: 181  NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK 240

Query: 1044 RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD 1223
            RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD
Sbjct: 241  RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD 300

Query: 1224 TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR 1403
            TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQG R+DFFLEGPFMPPR
Sbjct: 301  TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQG-RNDFFLEGPFMPPR 359

Query: 1404 MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS 1583
            MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS
Sbjct: 360  MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS 419

Query: 1584 QFGEMGGKFMKSQGLSQLYHNXXXXXXXXXXXXXKDMPPRFSKKGQLNADEISLRPAQSF 1763
            QFGEMGGKFMKSQGLSQLYHN             KDMPPRFSKKGQLNADEISLRPAQSF
Sbjct: 420  QFGEMGGKFMKSQGLSQLYHNQSQGLLSQLQGQSKDMPPRFSKKGQLNADEISLRPAQSF 479

Query: 1764 LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQEXXXXXXXXXXXX 1943
            LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQE            
Sbjct: 480  LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQEKPAKTSKKPPPS 539

Query: 1944 XXXXXXXXXXXXXXXXNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 2123
                            NSGNAN+AV+GVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA
Sbjct: 540  KEELLKLTEAVVTDYLNSGNANDAVSGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 599

Query: 2124 SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE 2303
            SSLISLLKQEGIATSDNFMQAFLNVL+QCPKLEVDIPLVKSYLAQFAARAIISELVSISE
Sbjct: 600  SSLISLLKQEGIATSDNFMQAFLNVLEQCPKLEVDIPLVKSYLAQFAARAIISELVSISE 659

Query: 2304 LAQPLESGTHFPXXXXXXXXXXXXXDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE 2483
            LAQPLESGTHFP             DREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE
Sbjct: 660  LAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE 719

Query: 2484 XXXXXXXXXXXXXXXXXXXXXXXDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 2663
                                   DPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI
Sbjct: 720  GKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 779

Query: 2664 SSEVNPPSDETDSSSAPSXXXXXXXXXXXXSFKPVMQKFLHDHVDLQVSALYALQVHCYN 2843
            SSEV+PPSDETDSSSAPS            SFKPVMQKFLHDHVDLQVSALYALQVHCYN
Sbjct: 780  SSEVSPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYN 839

Query: 2844 SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ 2990
            S+FPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ
Sbjct: 840  SSFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ 888


>ref|NP_001035221.1| eukaryotic translation initiation factor 4 gamma 2 isoform 2 [Mus
            musculus].
          Length = 868

 Score = 1400 bits (3624), Expect = 0.0
 Identities = 728/889 (81%), Positives = 735/889 (82%)
 Frame = +3

Query: 324  VESAIAEXXXXXXXXXXXXXXXXXXPQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD 503
            +ESAIAE                  PQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD
Sbjct: 1    MESAIAEGGASRFSASSGGGGSRGAPQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD 60

Query: 504  XXXXXXXXXEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXD 683
                     EKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVES            D
Sbjct: 61   NSAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVD 120

Query: 684  KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR 863
            KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR
Sbjct: 121  KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR 180

Query: 864  NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK 1043
            NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK
Sbjct: 181  NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK 240

Query: 1044 RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD 1223
            RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD
Sbjct: 241  RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD 300

Query: 1224 TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR 1403
            TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQG R+DFFLEGPFMPPR
Sbjct: 301  TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQG-RNDFFLEGPFMPPR 359

Query: 1404 MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS 1583
            MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS
Sbjct: 360  MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS 419

Query: 1584 QFGEMGGKFMKSQGLSQLYHNXXXXXXXXXXXXXKDMPPRFSKKGQLNADEISLRPAQSF 1763
            QFGEMGGKFMKSQ                                      ISLRPAQSF
Sbjct: 420  QFGEMGGKFMKSQ--------------------------------------ISLRPAQSF 441

Query: 1764 LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQEXXXXXXXXXXXX 1943
            LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQE            
Sbjct: 442  LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQEKPAKTSKKPPPS 501

Query: 1944 XXXXXXXXXXXXXXXXNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 2123
                            NSGNAN+AV+GVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA
Sbjct: 502  KEELLKLTEAVVTDYLNSGNANDAVSGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 561

Query: 2124 SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE 2303
            SSLISLLKQEGIATSDNFMQAFLNVL+QCPKLEVDIPLVKSYLAQFAARAIISELVSISE
Sbjct: 562  SSLISLLKQEGIATSDNFMQAFLNVLEQCPKLEVDIPLVKSYLAQFAARAIISELVSISE 621

Query: 2304 LAQPLESGTHFPXXXXXXXXXXXXXDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE 2483
            LAQPLESGTHFP             DREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE
Sbjct: 622  LAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE 681

Query: 2484 XXXXXXXXXXXXXXXXXXXXXXXDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 2663
                                   DPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI
Sbjct: 682  GKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 741

Query: 2664 SSEVNPPSDETDSSSAPSXXXXXXXXXXXXSFKPVMQKFLHDHVDLQVSALYALQVHCYN 2843
            SSEV+PPSDETDSSSAPS            SFKPVMQKFLHDHVDLQVSALYALQVHCYN
Sbjct: 742  SSEVSPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYN 801

Query: 2844 SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ 2990
            S+FPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ
Sbjct: 802  SSFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ 850


>ref|NP_001005331.1| eukaryotic translation initiation factor 4 gamma 1 isoform b [Mus
            musculus].
          Length = 1593

 Score =  177 bits (450), Expect = 4e-44
 Identities = 109/297 (36%), Positives = 166/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 757  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 816

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 817  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 868

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R IA+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 869  ATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 926

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD  +AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 927  -----ESLECLCRLLTTIGKDLDFAKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 981

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR+ +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 982  LRQSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 1036


>ref|NP_666053.2| eukaryotic translation initiation factor 4 gamma 1 isoform a [Mus
            musculus].
          Length = 1600

 Score =  177 bits (450), Expect = 4e-44
 Identities = 109/297 (36%), Positives = 166/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 764  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 823

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 824  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 875

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R IA+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 876  ATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 933

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD  +AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 934  -----ESLECLCRLLTTIGKDLDFAKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 988

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR+ +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 989  LRQSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 1043


>ref|NP_766291.2| eukaryotic translation initiation factor 4 gamma 3 [Mus musculus].
          Length = 1578

 Score =  176 bits (447), Expect = 8e-44
 Identities = 111/298 (37%), Positives = 168/298 (56%), Gaps = 12/298 (4%)
 Frame = +3

Query: 456  QNAQKWIPARSTRRDDXXXXXXXXXEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVG 635
            +NA K    R +  DD         E  +   +FRKVR ILNKLTP+ F++L  ++  + 
Sbjct: 743  ENAWKPSQKRDSHADDP--------ESIKTQELFRKVRSILNKLTPQMFNQLMKQVSALT 794

Query: 636  VESXXXXXXXXXXXXDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFR 815
            V++            +KA++EP +S  YA +C  L         P A+ +PG   +  FR
Sbjct: 795  VDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLV----TLKVPMAD-KPGN--TVNFR 847

Query: 816  RLLISKLQDEFENRTRNVDVYDKRENPL----LPEE--------EEQRAIAKIKMLGNIK 959
            +LL+++ Q EFE    + DV++K++  L     PEE        EE +  A+ + +GNIK
Sbjct: 848  KLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIK 907

Query: 960  FIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLDHERAKS 1139
            FIGEL KL ++ E+I+H C+  LL+           E LECLC+++ T+G  LD E+AK 
Sbjct: 908  FIGELFKLKMLTEAIMHDCVVKLLKNHDE-------ESLECLCRLLTTIGKDLDFEKAKP 960

Query: 1140 LMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDA 1313
             MDQYF +M  ++  ++  +RIRF+LQD ++LR  +WV R+A  D GPKTI QI ++A
Sbjct: 961  RMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRA--DQGPKTIEQIHKEA 1016


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 92,064,417
Number of extensions: 2176062
Number of successful extensions: 7146
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7054
Number of HSP's successfully gapped: 6
Length of query: 1067
Length of database: 15,617,559
Length adjustment: 112
Effective length of query: 955
Effective length of database: 12,253,527
Effective search space: 11702118285
Effective search space used: 11702118285
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007708
         (3201 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003123027.1| PREDICTED: eukaryotic translation initiation...  1165   0.0  
Alignment   gi|XP_003353997.1| PREDICTED: eukaryotic translation initiation...  1099   0.0  
Alignment   gi|XP_003358774.1| PREDICTED: eukaryotic translation initiation...   177   3e-44
Alignment   gi|XP_003358773.1| PREDICTED: eukaryotic translation initiation...   177   3e-44
Alignment   gi|XP_003358772.1| PREDICTED: eukaryotic translation initiation...   177   3e-44
Alignment   gi|XP_003358771.1| PREDICTED: eukaryotic translation initiation...   177   3e-44
Alignment   gi|XP_003358770.1| PREDICTED: eukaryotic translation initiation...   177   3e-44
Alignment   gi|XP_003358769.1| PREDICTED: eukaryotic translation initiation...   177   3e-44
Alignment   gi|XP_003358768.1| PREDICTED: eukaryotic translation initiation...   177   3e-44
Alignment   gi|XP_003127729.2| PREDICTED: eukaryotic translation initiation...   137   5e-32

>ref|XP_003123027.1| PREDICTED: eukaryotic translation initiation factor 4 gamma 2-like
            isoform 1 [Sus scrofa].
          Length = 701

 Score = 1165 bits (3014), Expect = 0.0
 Identities = 594/683 (86%), Positives = 594/683 (86%)
 Frame = +3

Query: 942  MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 1121
            MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD
Sbjct: 1    MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 60

Query: 1122 HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 1301
            HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI
Sbjct: 61   HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 120

Query: 1302 RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG 1481
            RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG
Sbjct: 121  RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG 180

Query: 1482 PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQGLSQLYHNXXXXX 1661
            PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQGLSQLYHN     
Sbjct: 181  PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQGLSQLYHNQSQGL 240

Query: 1662 XXXXXXXXKDMPPRFSKKGQLNADEISLRPAQSFLMNKNQVPKLQPQITMIPPSAQPPRT 1841
                    KDMPPRFSKKGQLNADEISLRPAQSFLMNKNQVPKLQPQITMIPPSAQPPRT
Sbjct: 241  LSQLQGQSKDMPPRFSKKGQLNADEISLRPAQSFLMNKNQVPKLQPQITMIPPSAQPPRT 300

Query: 1842 QTPPLGQTPQLGLKTNPPLIQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSGNANEAVN 2021
            QTPPLGQTPQLGLKTNPPLIQE                            NSGNANEAVN
Sbjct: 301  QTPPLGQTPQLGLKTNPPLIQEKPAKTSKKPPPSKEELLKLTETVVTEYLNSGNANEAVN 360

Query: 2022 GVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 2201
            GVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL
Sbjct: 361  GVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 420

Query: 2202 DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPXXXXXXXXXXXXXD 2381
            DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFP             D
Sbjct: 421  DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQD 480

Query: 2382 REWLTELFQQSKVNMQKMLPEIDQNKDRMLEILEXXXXXXXXXXXXXXXXXXXXXXXDPS 2561
            REWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE                       DPS
Sbjct: 481  REWLTELFQQSKVNMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPS 540

Query: 2562 PQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSXXXXXXXX 2741
            PQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPS        
Sbjct: 541  PQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEK 600

Query: 2742 XXXXSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAF 2921
                SFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAF
Sbjct: 601  QLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAF 660

Query: 2922 LAWKEDITQEFPGKGKALFQVNQ 2990
            LAWKEDITQEFPGKGKALFQVNQ
Sbjct: 661  LAWKEDITQEFPGKGKALFQVNQ 683


>ref|XP_003353997.1| PREDICTED: eukaryotic translation initiation factor 4 gamma 2-like
            isoform 2 [Sus scrofa].
          Length = 663

 Score = 1099 bits (2843), Expect = 0.0
 Identities = 569/683 (83%), Positives = 569/683 (83%)
 Frame = +3

Query: 942  MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 1121
            MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD
Sbjct: 1    MLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLD 60

Query: 1122 HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 1301
            HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI
Sbjct: 61   HERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQI 120

Query: 1302 RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG 1481
            RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG
Sbjct: 121  RQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPRMKMDRDPLGGLADMFGQMPGSGIGTG 180

Query: 1482 PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQGLSQLYHNXXXXX 1661
            PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQ             
Sbjct: 181  PGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQSQFGEMGGKFMKSQ------------- 227

Query: 1662 XXXXXXXXKDMPPRFSKKGQLNADEISLRPAQSFLMNKNQVPKLQPQITMIPPSAQPPRT 1841
                                     ISLRPAQSFLMNKNQVPKLQPQITMIPPSAQPPRT
Sbjct: 228  -------------------------ISLRPAQSFLMNKNQVPKLQPQITMIPPSAQPPRT 262

Query: 1842 QTPPLGQTPQLGLKTNPPLIQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSGNANEAVN 2021
            QTPPLGQTPQLGLKTNPPLIQE                            NSGNANEAVN
Sbjct: 263  QTPPLGQTPQLGLKTNPPLIQEKPAKTSKKPPPSKEELLKLTETVVTEYLNSGNANEAVN 322

Query: 2022 GVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 2201
            GVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL
Sbjct: 323  GVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 382

Query: 2202 DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPXXXXXXXXXXXXXD 2381
            DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFP             D
Sbjct: 383  DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQD 442

Query: 2382 REWLTELFQQSKVNMQKMLPEIDQNKDRMLEILEXXXXXXXXXXXXXXXXXXXXXXXDPS 2561
            REWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE                       DPS
Sbjct: 443  REWLTELFQQSKVNMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPS 502

Query: 2562 PQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSXXXXXXXX 2741
            PQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPS        
Sbjct: 503  PQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEK 562

Query: 2742 XXXXSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAF 2921
                SFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAF
Sbjct: 563  QLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAF 622

Query: 2922 LAWKEDITQEFPGKGKALFQVNQ 2990
            LAWKEDITQEFPGKGKALFQVNQ
Sbjct: 623  LAWKEDITQEFPGKGKALFQVNQ 645


>ref|XP_003358774.1| PREDICTED: eukaryotic translation initiation factor 4 gamma 1 isoform
            7 [Sus scrofa].
          Length = 1439

 Score =  177 bits (449), Expect = 3e-44
 Identities = 109/297 (36%), Positives = 165/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 599  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 658

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 659  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 710

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R  A+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 711  ATAEERGRLKEELEEARDTARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 768

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 769  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 823

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 824  LRRSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 878


>ref|XP_003358773.1| PREDICTED: eukaryotic translation initiation factor 4 gamma 1 isoform
            6 [Sus scrofa].
          Length = 1563

 Score =  177 bits (449), Expect = 3e-44
 Identities = 109/297 (36%), Positives = 165/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 723  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 782

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 783  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 834

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R  A+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 835  ATAEERGRLKEELEEARDTARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 892

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 893  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 947

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 948  LRRSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 1002


>ref|XP_003358772.1| PREDICTED: eukaryotic translation initiation factor 4 gamma 1 isoform
            5 [Sus scrofa].
          Length = 1516

 Score =  177 bits (449), Expect = 3e-44
 Identities = 109/297 (36%), Positives = 165/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 676  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 735

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 736  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 787

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R  A+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 788  ATAEERGRLKEELEEARDTARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 845

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 846  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 900

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 901  LRRSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 955


>ref|XP_003358771.1| PREDICTED: eukaryotic translation initiation factor 4 gamma 1 isoform
            4 [Sus scrofa].
          Length = 1610

 Score =  177 bits (449), Expect = 3e-44
 Identities = 109/297 (36%), Positives = 165/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 770  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 829

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 830  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 881

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R  A+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 882  ATAEERGRLKEELEEARDTARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 939

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 940  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 994

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 995  LRRSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 1049


>ref|XP_003358770.1| PREDICTED: eukaryotic translation initiation factor 4 gamma 1 isoform
            3 [Sus scrofa].
          Length = 1610

 Score =  177 bits (449), Expect = 3e-44
 Identities = 109/297 (36%), Positives = 165/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 770  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 829

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 830  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 881

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R  A+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 882  ATAEERGRLKEELEEARDTARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 939

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 940  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 994

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 995  LRRSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 1049


>ref|XP_003358769.1| PREDICTED: eukaryotic translation initiation factor 4 gamma 1 isoform
            2 [Sus scrofa].
          Length = 1603

 Score =  177 bits (449), Expect = 3e-44
 Identities = 109/297 (36%), Positives = 165/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 763  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 822

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 823  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 874

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R  A+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 875  ATAEERGRLKEELEEARDTARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 932

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 933  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 987

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 988  LRRSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 1042


>ref|XP_003358768.1| PREDICTED: eukaryotic translation initiation factor 4 gamma 1 isoform
            1 [Sus scrofa].
          Length = 1604

 Score =  177 bits (449), Expect = 3e-44
 Identities = 109/297 (36%), Positives = 165/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 764  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 823

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 824  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 875

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R  A+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 876  ATAEERGRLKEELEEARDTARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 933

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 934  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 988

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 989  LRRSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 1043


>ref|XP_003127729.2| PREDICTED: eukaryotic translation initiation factor 4 gamma 3 [Sus
            scrofa].
          Length = 1256

 Score =  137 bits (344), Expect = 5e-32
 Identities = 78/189 (41%), Positives = 117/189 (61%), Gaps = 12/189 (6%)
 Frame = +3

Query: 783  QPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL----LPEE--------EEQRA 926
            +PG   +  FR+LL+++ Q EFE    + DV++K++  L     PEE        EE + 
Sbjct: 497  KPGN--TVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKD 554

Query: 927  IAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTV 1106
             A+ + +GNIKFIGEL KL ++ E+I+H C+  LL+           E LECLC+++ T+
Sbjct: 555  KARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-------ESLECLCRLLTTI 607

Query: 1107 GPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPK 1286
            G  LD E+AK  MDQYF +M  ++  ++  +RIRF+LQD ++LR  +WV R+A  D GPK
Sbjct: 608  GKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRA--DQGPK 665

Query: 1287 TINQIRQDA 1313
            TI QI ++A
Sbjct: 666  TIEQIHKEA 674


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 68,245,504
Number of extensions: 1715353
Number of successful extensions: 5459
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5344
Number of HSP's successfully gapped: 11
Length of query: 1067
Length of database: 11,343,932
Length adjustment: 109
Effective length of query: 958
Effective length of database: 8,630,159
Effective search space: 8267692322
Effective search space used: 8267692322
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007708
         (3201 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001166176.1| eukaryotic translation initiation factor 4 g...  1482   0.0  
Alignment   gi|NP_001409.3| eukaryotic translation initiation factor 4 gamm...  1482   0.0  
Alignment   gi|NP_001036024.3| eukaryotic translation initiation factor 4 g...  1416   0.0  
Alignment   gi|NP_001181876.1| eukaryotic translation initiation factor 4 g...   178   2e-44
Alignment   gi|NP_001181875.1| eukaryotic translation initiation factor 4 g...   178   2e-44
Alignment   gi|NP_937887.1| eukaryotic translation initiation factor 4 gamm...   178   2e-44
Alignment   gi|NP_937885.1| eukaryotic translation initiation factor 4 gamm...   178   2e-44
Alignment   gi|NP_004944.3| eukaryotic translation initiation factor 4 gamm...   178   2e-44
Alignment   gi|NP_886553.3| eukaryotic translation initiation factor 4 gamm...   178   2e-44
Alignment   gi|NP_937884.1| eukaryotic translation initiation factor 4 gamm...   178   2e-44

>ref|NP_001166176.1| eukaryotic translation initiation factor 4 gamma 2 isoform 1 [Homo
            sapiens].
          Length = 907

 Score = 1482 bits (3837), Expect = 0.0
 Identities = 760/889 (85%), Positives = 761/889 (85%)
 Frame = +3

Query: 324  VESAIAEXXXXXXXXXXXXXXXXXXPQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD 503
            +ESAIAE                  PQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD
Sbjct: 1    MESAIAEGGASRFSASSGGGGSRGAPQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD 60

Query: 504  XXXXXXXXXEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXD 683
                     EKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVES            D
Sbjct: 61   NSAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVD 120

Query: 684  KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR 863
            KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR
Sbjct: 121  KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR 180

Query: 864  NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK 1043
            NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK
Sbjct: 181  NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK 240

Query: 1044 RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD 1223
            RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD
Sbjct: 241  RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD 300

Query: 1224 TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR 1403
            TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR
Sbjct: 301  TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR 360

Query: 1404 MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS 1583
            MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS
Sbjct: 361  MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS 420

Query: 1584 QFGEMGGKFMKSQGLSQLYHNXXXXXXXXXXXXXKDMPPRFSKKGQLNADEISLRPAQSF 1763
            QFGEMGGKFMKSQGLSQLYHN             KDMPPRFSKKGQLNADEISLRPAQSF
Sbjct: 421  QFGEMGGKFMKSQGLSQLYHNQSQGLLSQLQGQSKDMPPRFSKKGQLNADEISLRPAQSF 480

Query: 1764 LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQEXXXXXXXXXXXX 1943
            LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQE            
Sbjct: 481  LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQEKPAKTSKKPPPS 540

Query: 1944 XXXXXXXXXXXXXXXXNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 2123
                            NSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA
Sbjct: 541  KEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 600

Query: 2124 SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE 2303
            SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE
Sbjct: 601  SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE 660

Query: 2304 LAQPLESGTHFPXXXXXXXXXXXXXDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE 2483
            LAQPLESGTHFP             DREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE
Sbjct: 661  LAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE 720

Query: 2484 XXXXXXXXXXXXXXXXXXXXXXXDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 2663
                                   DPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI
Sbjct: 721  GKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 780

Query: 2664 SSEVNPPSDETDSSSAPSXXXXXXXXXXXXSFKPVMQKFLHDHVDLQVSALYALQVHCYN 2843
            SSEVNPPSDETDSSSAPS            SFKPVMQKFLHDHVDLQVSALYALQVHCYN
Sbjct: 781  SSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYN 840

Query: 2844 SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ 2990
            SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ
Sbjct: 841  SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ 889


>ref|NP_001409.3| eukaryotic translation initiation factor 4 gamma 2 isoform 1 [Homo
            sapiens].
          Length = 907

 Score = 1482 bits (3837), Expect = 0.0
 Identities = 760/889 (85%), Positives = 761/889 (85%)
 Frame = +3

Query: 324  VESAIAEXXXXXXXXXXXXXXXXXXPQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD 503
            +ESAIAE                  PQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD
Sbjct: 1    MESAIAEGGASRFSASSGGGGSRGAPQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD 60

Query: 504  XXXXXXXXXEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXD 683
                     EKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVES            D
Sbjct: 61   NSAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVD 120

Query: 684  KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR 863
            KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR
Sbjct: 121  KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR 180

Query: 864  NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK 1043
            NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK
Sbjct: 181  NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK 240

Query: 1044 RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD 1223
            RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD
Sbjct: 241  RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD 300

Query: 1224 TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR 1403
            TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR
Sbjct: 301  TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR 360

Query: 1404 MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS 1583
            MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS
Sbjct: 361  MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS 420

Query: 1584 QFGEMGGKFMKSQGLSQLYHNXXXXXXXXXXXXXKDMPPRFSKKGQLNADEISLRPAQSF 1763
            QFGEMGGKFMKSQGLSQLYHN             KDMPPRFSKKGQLNADEISLRPAQSF
Sbjct: 421  QFGEMGGKFMKSQGLSQLYHNQSQGLLSQLQGQSKDMPPRFSKKGQLNADEISLRPAQSF 480

Query: 1764 LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQEXXXXXXXXXXXX 1943
            LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQE            
Sbjct: 481  LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQEKPAKTSKKPPPS 540

Query: 1944 XXXXXXXXXXXXXXXXNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 2123
                            NSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA
Sbjct: 541  KEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 600

Query: 2124 SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE 2303
            SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE
Sbjct: 601  SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE 660

Query: 2304 LAQPLESGTHFPXXXXXXXXXXXXXDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE 2483
            LAQPLESGTHFP             DREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE
Sbjct: 661  LAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE 720

Query: 2484 XXXXXXXXXXXXXXXXXXXXXXXDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 2663
                                   DPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI
Sbjct: 721  GKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 780

Query: 2664 SSEVNPPSDETDSSSAPSXXXXXXXXXXXXSFKPVMQKFLHDHVDLQVSALYALQVHCYN 2843
            SSEVNPPSDETDSSSAPS            SFKPVMQKFLHDHVDLQVSALYALQVHCYN
Sbjct: 781  SSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYN 840

Query: 2844 SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ 2990
            SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ
Sbjct: 841  SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ 889


>ref|NP_001036024.3| eukaryotic translation initiation factor 4 gamma 2 isoform 2 [Homo
            sapiens].
          Length = 869

 Score = 1416 bits (3666), Expect = 0.0
 Identities = 735/889 (82%), Positives = 736/889 (82%)
 Frame = +3

Query: 324  VESAIAEXXXXXXXXXXXXXXXXXXPQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD 503
            +ESAIAE                  PQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD
Sbjct: 1    MESAIAEGGASRFSASSGGGGSRGAPQHYPKTAGNSEFLGKTPGQNAQKWIPARSTRRDD 60

Query: 504  XXXXXXXXXEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXD 683
                     EKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVES            D
Sbjct: 61   NSAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVD 120

Query: 684  KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR 863
            KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR
Sbjct: 121  KALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTR 180

Query: 864  NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK 1043
            NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK
Sbjct: 181  NVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKK 240

Query: 1044 RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD 1223
            RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD
Sbjct: 241  RVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQD 300

Query: 1224 TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR 1403
            TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR
Sbjct: 301  TVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFMPPR 360

Query: 1404 MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS 1583
            MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS
Sbjct: 361  MKMDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGRHRSNQLFNGHGGHIMPPTQS 420

Query: 1584 QFGEMGGKFMKSQGLSQLYHNXXXXXXXXXXXXXKDMPPRFSKKGQLNADEISLRPAQSF 1763
            QFGEMGGKFMKSQ                                      ISLRPAQSF
Sbjct: 421  QFGEMGGKFMKSQ--------------------------------------ISLRPAQSF 442

Query: 1764 LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQEXXXXXXXXXXXX 1943
            LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQE            
Sbjct: 443  LMNKNQVPKLQPQITMIPPSAQPPRTQTPPLGQTPQLGLKTNPPLIQEKPAKTSKKPPPS 502

Query: 1944 XXXXXXXXXXXXXXXXNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 2123
                            NSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA
Sbjct: 503  KEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 562

Query: 2124 SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE 2303
            SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE
Sbjct: 563  SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISE 622

Query: 2304 LAQPLESGTHFPXXXXXXXXXXXXXDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE 2483
            LAQPLESGTHFP             DREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE
Sbjct: 623  LAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILE 682

Query: 2484 XXXXXXXXXXXXXXXXXXXXXXXDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 2663
                                   DPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI
Sbjct: 683  GKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYI 742

Query: 2664 SSEVNPPSDETDSSSAPSXXXXXXXXXXXXSFKPVMQKFLHDHVDLQVSALYALQVHCYN 2843
            SSEVNPPSDETDSSSAPS            SFKPVMQKFLHDHVDLQVSALYALQVHCYN
Sbjct: 743  SSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYN 802

Query: 2844 SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ 2990
            SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ
Sbjct: 803  SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQ 851


>ref|NP_001181876.1| eukaryotic translation initiation factor 4 gamma 1 isoform 6 [Homo
            sapiens].
          Length = 1606

 Score =  178 bits (452), Expect = 2e-44
 Identities = 110/297 (37%), Positives = 166/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 767  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 826

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 827  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 878

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R IA+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 879  ATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 936

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 937  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 991

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 992  LRGSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 1046


>ref|NP_001181875.1| eukaryotic translation initiation factor 4 gamma 1 isoform 6 [Homo
            sapiens].
          Length = 1606

 Score =  178 bits (452), Expect = 2e-44
 Identities = 110/297 (37%), Positives = 166/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 767  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 826

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 827  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 878

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R IA+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 879  ATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 936

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 937  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 991

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 992  LRGSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 1046


>ref|NP_937887.1| eukaryotic translation initiation factor 4 gamma 1 isoform 2 [Homo
            sapiens].
          Length = 1512

 Score =  178 bits (452), Expect = 2e-44
 Identities = 110/297 (37%), Positives = 166/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 673  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 732

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 733  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 784

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R IA+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 785  ATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 842

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 843  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 897

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 898  LRGSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 952


>ref|NP_937885.1| eukaryotic translation initiation factor 4 gamma 1 isoform 3 [Homo
            sapiens].
          Length = 1435

 Score =  178 bits (452), Expect = 2e-44
 Identities = 110/297 (37%), Positives = 166/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 596  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 655

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 656  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 707

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R IA+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 708  ATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 765

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 766  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 820

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 821  LRGSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 875


>ref|NP_004944.3| eukaryotic translation initiation factor 4 gamma 1 isoform 4 [Homo
            sapiens].
          Length = 1404

 Score =  178 bits (452), Expect = 2e-44
 Identities = 110/297 (37%), Positives = 166/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 565  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 624

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 625  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 676

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R IA+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 677  ATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 734

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 735  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 789

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 790  LRGSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 844


>ref|NP_886553.3| eukaryotic translation initiation factor 4 gamma 1 isoform 1 [Homo
            sapiens].
          Length = 1600

 Score =  178 bits (452), Expect = 2e-44
 Identities = 110/297 (37%), Positives = 166/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 761  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 820

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 821  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 872

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R IA+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 873  ATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 930

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 931  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 985

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 986  LRGSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 1040


>ref|NP_937884.1| eukaryotic translation initiation factor 4 gamma 1 isoform 5 [Homo
            sapiens].
          Length = 1599

 Score =  178 bits (452), Expect = 2e-44
 Identities = 110/297 (37%), Positives = 166/297 (55%), Gaps = 14/297 (4%)
 Frame = +3

Query: 552  IFRKVRGILNKLTPEKFDKLCLELLNVGVESXXXXXXXXXXXXDKALEEPKYSSLYAQLC 731
            +FR+VR ILNKLTP+ F +L  ++  + +++            +KA+ EP +S  YA +C
Sbjct: 760  LFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMC 819

Query: 732  LRL-AEDAPNFDGPAAEGQPGQKQSTTFRRLLISKLQDEFENRTRNVDVYDKRENPL--- 899
              L A   P  + P          +  FR+LL+++ Q EFE    + +V++K++  +   
Sbjct: 820  RCLMALKVPTTEKPTV--------TVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEA 871

Query: 900  --------LPEE-EEQRAIAKIKMLGNIKFIGELGKLDLIHESILHKCIKTLLEKKKRVQ 1052
                    L EE EE R IA+ + LGNIKFIGEL KL ++ E+I+H C+  LL+      
Sbjct: 872  ATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE-- 929

Query: 1053 LKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVE 1232
                 E LECLC+++ T+G  LD E+AK  MDQYF +M  ++  K+  +RIRF+LQD ++
Sbjct: 930  -----ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLD 984

Query: 1233 LREHHWVPRKAFLDNGPKTINQIRQDA-VKDLGVFIPAPMAQGMRSDFFLEGPFMPP 1400
            LR  +WVPR+   D GPKTI+QI ++A +++    I         SD    GP  PP
Sbjct: 985  LRGSNWVPRRG--DQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRGGPPGPP 1039


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 108,101,877
Number of extensions: 2569001
Number of successful extensions: 8936
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 8723
Number of HSP's successfully gapped: 14
Length of query: 1067
Length of database: 18,297,164
Length adjustment: 113
Effective length of query: 954
Effective length of database: 14,572,232
Effective search space: 13901909328
Effective search space used: 13901909328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007708
         (3201 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                        1249   0.0  
Sscrofa_Chr02                                                         509   e-141

>Sscrofa_Chr13 
||          Length = 218635234

 Score = 1249 bits (630), Expect = 0.0
 Identities = 1196/1383 (86%), Gaps = 40/1383 (2%)
 Strand = Plus / Plus

                                                                             
Query: 1735      agattagcctgaggcctgctcagtctttcctaatgaataaaaatcaagtgccaaagcttc 1794
                 ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 217468921 agattcgcctgaggcctgctcagtctttcctaatgaacacaaatcaagtgccaaagcttc 217468980

                                                                             
Query: 1795      agccccagataactatgatccctcctagtgcacaaccaccacgcactcaaacaccacctc 1854
                 ||||||||||| || |||  ||||||||||||| ||| || | | |||||||||||||||
Sbjct: 217468981 agccccagatacctctgactcctcctagtgcacgacccccgcaccctcaaacaccacctc 217469040

                                                                             
Query: 1855      tgggacagacacctcagcttggtctcaaaactaatccaccactaatccaggaaaagcctg 1914
                 |||||||||||| ||| ||||||| ||||||| | |||||||||||||||||| ||||||
Sbjct: 217469041 tgggacagacacttcatcttggtcccaaaactcacccaccactaatccaggaagagcctg 217469100

                                                                             
Query: 1915      ccaaaaccagtaaaaagccaccaccatcaaaggaagaactgcttaaactaactgaaactg 1974
                 || ||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||||
Sbjct: 217469101 cccaaaccagtataaagccaccaccatcaaaggaagacctgctgaaactaactgcaactg 217469160

                                                                             
Query: 1975      ttgtaactgaatatctgaatagtggaaatgcaaacgaagctgtcaatggtgtaagagaga 2034
                          | ||||||  | |||||||||||||||||||||||  |||| |||||||||
Sbjct: 217469161 ---------agtatctgggtggtggaaatgcaaacgaagctgtcggtggtataagagaga 217469211

                                                                             
Query: 2035      tgagggctcctaaacactttctccctgagatgttaagcaaagtaatcatcctgtcattag 2094
                  ||| ||  | | || ||||||||| |||||||||||| ||| | |||||||||| ||||
Sbjct: 217469212 cgagagcctc-agacgctttctccccgagatgttaagcgaagca-tcatcctgtccttag 217469269

                                                                             
Query: 2095      atagaagtgatgaagataaagaaaaagccagttctttgatcagtttactcaaacaggaag 2154
                 | |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 217469270 acagaagtgaggaagataaagcaaaagccagttctttgatcagttgactcaaacaggaag 217469329

                                                                             
Query: 2155      ggatagccacaagtgacaacttcatgcaggctttcctgaatgtattggaccagtgcccca 2214
                 ||| ||||||||| |||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct: 217469330 ggagagccacaagcgacagcttcatgcaggctttcctgaatgtattggacccgcgcccca 217469389

                                                                             
Query: 2215      aactggaggttgacatccctttggtgaagtcatatttagcacagtttgctgctcgtgcta 2274
                   ||||||||||||||||||| ||||||||| ||| |||||  |||||| ||||||||| 
Sbjct: 217469390 ctctggaggttgacatcccttgggtgaagtcgtatgtagcagcgtttgcagctcgtgctg 217469449

                                                                             
Query: 2275      ttatttcagagctggtgagcatttcagaactagcgcaaccactggaaagtggcacccact 2334
                 | |||||||||||||||||||||| ||||| |||||| ||||||||||| ||||||| ||
Sbjct: 217469450 tcatttcagagctggtgagcattttagaacaagcgcagccactggaaaggggcacccgct 217469509

                                                                             
Query: 2335      ttcctctcttcttactttgtcttcagcaattagctaaattacaagaccgagaatggttaa 2394
                 |||||||||||||||||||||| ||||||||||||   || | |||||||||||||||||
Sbjct: 217469510 ttcctctcttcttactttgtctccagcaattagctgccttccgagaccgagaatggttaa 217469569

                                                                             
Query: 2395      cagagcttttccaacaaagcaaggtcaatatgcagaaaatgcttccagaaattgatcaga 2454
                 |||||||| |||||||||||||||||| |  |||||||||||||||||| |||| |||||
Sbjct: 217469570 cagagcttctccaacaaagcaaggtcactgcgcagaaaatgcttccagagattggtcaga 217469629

                                                                             
Query: 2455      ataaggaccgcatgttggagatcttggaaggaaagggactaagcttcttgttcccactcc 2514
                 |||||||||||| ||||||||||||||||||||||||||||||||||| ||      |||
Sbjct: 217469630 ataaggaccgcacgttggagatcttggaaggaaagggactaagcttctcgt------tcc 217469683

                                                                             
Query: 2515      tcaaattggagaaggaactgttaaagcaaataaagttggatccatcccctcaaaccatat 2574
                 ||||||||||||||||||  |  |||||||| ||||||||||||||||||||||||  | 
Sbjct: 217469684 tcaaattggagaaggaaccatccaagcaaatcaagttggatccatcccctcaaacc--aa 217469741

                                                                             
Query: 2575      ataaatggattaaagataacatctctcccaaacttcatgtagataaaggatttgtgaaca 2634
                 |||||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct: 217469742 ataaatgggttaaagagaacatctctcccaaacttcatgtagacaaagggtttgtgagca 217469801

                                                                             
Query: 2635      tcttaatgactagcttcttacagtacatttctagtgaagtaaacccacccagcgatgaaa 2694
                 ||||| ||||| ||| ||||||||||||||||||||||||||| ||  || || | ||||
Sbjct: 217469802 tcttagtgacttgctgcttacagtacatttctagtgaagtaaaacccaccggcaacgaaa 217469861

                                                                             
Query: 2695      cagattcttcctctgctccttccaaagaacagttagagcaggaaaaacaactgcttcttt 2754
                 ||| ||||||| ||||||||||||||||||  | || |||||| ||||||||||||||||
Sbjct: 217469862 caggttcttccgctgctccttccaaagaacgatcagcgcaggagaaacaactgcttcttt 217469921

                                                                             
Query: 2755      ccttcaagccagtaatgcagaagttccttcatgatcatgttgatctacaagtcagtgctc 2814
                 |||||||||| || ||||||||| ||| ||||| ||| ||||| ||           |||
Sbjct: 217469922 ccttcaagcccgtgatgcagaaggtccctcatggtcacgttgacct-----------ctc 217469970

                                                                             
Query: 2815      tctatgctcttcaggtgcactgctacaacagcaacttcccaaaaggcatgttactccgct 2874
                 |       || | ||||| ||||| |||||||| |||||| ||||||| |   |||||||
Sbjct: 217469971 t------gctaccggtgccctgctccaacagcagcttccccaaaggcacgccgctccgct 217470024

                                                                             
Query: 2875      tttttgttcacttctatgacatggaaattattgaggaagaagctttcttggcttggaaag 2934
                 ||||||||| |||| ||||||||||  ||| ||||||||||||| || ||||||||||||
Sbjct: 217470025 tttttgttcccttccatgacatggaggttactgaggaagaagctctcctggcttggaaag 217470084

                                                                             
Query: 2935      aagatataacccaagagtttcctgggaaaggcaaggctttgttccaggtgaatcagtggc 2994
                 ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 217470085 aagctataacccaagagcttcctgggaaaggcaaggctttgttccaggtgcatctgtggc 217470144

                                                                             
Query: 2995      taacctggctagaaactgc---tgaagaagaagaatccgaggaagaagctgactaaaaga 3051
                 ||||||||| ||||| |||    |||||||||||| | ||||||| ||||||||||||||
Sbjct: 217470145 taacctggccagaaattgcggaagaagaagaagaacctgaggaaggagctgactaaaaga 217470204

                                                                             
Query: 3052      accagccaaagccttaaattgtgcaa-acatactgttgctatgatgtaactgcatttgac 3110
                 ||||||||||||||||  |||||||| || ||||||||  |||||||||| || ||||||
Sbjct: 217470205 accagccaaagccttacgttgtgcaacacgtactgttgtcatgatgtaaccgcctttgac 217470264

                    
Query: 3111      cta 3113
                 |||
Sbjct: 217470265 cta 217470267



 Score = 1136 bits (573), Expect = 0.0
 Identities = 1175/1373 (85%), Gaps = 20/1373 (1%)
 Strand = Plus / Plus

                                                                             
Query: 245       cgtttctcccatccccttccctccccacccatccattaatattattcttttgaagattct 304
                 |||||||||| ||||||||||||||||||| |||| | |||   ||||||||| ||||||
Sbjct: 217467561 cgtttctcccgtccccttccctccccaccc-tccactgatagggttcttttgaggattct 217467619

                                                                             
Query: 305       tcgttgtcaagccgccaaagtggagagtgcgattgcagaagggggtgcttctcgtttcag 364
                 |||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 217467620 tcgttgtcaagccgcccaagtggagagtgcgacggcagaagggggtgcttctcgtttcag 217467679

                                                                             
Query: 365       tgcttcttcgggcggaggaggaagtaggggtgcacctcagcactatcccaagactgctgg 424
                  ||||||| |||||||| |||| |||||| ||||||||||||| | |||||||| || ||
Sbjct: 217467680 ggcttctttgggcggagcaggaggtaggg-tgcacctcagcacgaccccaagaccgccgg 217467738

                                                                             
Query: 425       caacagcgagttcctggggaaaaccccagggcaaaacgctcagaaatggattcctgcacg 484
                 || ||||| ||||| ||||||||||              || |||  |||| ||||||| 
Sbjct: 217467739 caccagcgcgttcccggggaaaacc--------------tcggaagcggatccctgcacc 217467784

                                                                             
Query: 485       aagcactagacgagatgacaactccgcagcaaacaactccgcaaatgaaaaagaacgaca 544
                 ||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||| || ||
Sbjct: 217467785 aagcactggacgaggtgacacctccgcagcgaacaacgccgcaaatgagaaagaccggca 217467844

                                                                             
Query: 545       tgatgcaatcttcaggaaagtaagaggcatactaaataagcttactcctgaaaagtttga 604
                  || ||||    | ||| ||| |||||| | |||| || || ||||||||||||||||||
Sbjct: 217467845 cgacgcaacgcccgggagagtcagaggcgtgctaactacgcctactcctgaaaagtttga 217467904

                                                                             
Query: 605       caagctatgccttgagctcctcaatgtgggtgtagagtctaaactcatccttaaaggggt 664
                 ||||||  |||| |||||||||||||||  ||||||| || |||||||||| |||||| |
Sbjct: 217467905 caagctgagcctcgagctcctcaatgtgcatgtagaggctcaactcatcctgaaagggct 217467964

                                                                             
Query: 665       catactgctgattgtggacaaagccctagaagagccaaagtatagctcactgtatgctca 724
                 | ||||||||| ||||| ||||||||| ||||||||  || | ||||||| | |||| | 
Sbjct: 217467965 cgtactgctgactgtgggcaaagccctggaagagccggagcagagctcaccggatgcgcg 217468024

                                                                             
Query: 725       gctatgtctgcgattggcagaagatgcaccaaactttgatggcccagcagcagagggtca 784
                 || | ||||||||| |||||||||||||||| ||| |||  ||||||| |||||||||||
Sbjct: 217468025 gccaggtctgcgatcggcagaagatgcaccagactctgacagcccagcggcagagggtca 217468084

                                                                             
Query: 785       gccaggacagaagcaaagcacaacattcagacgcctcctaatttccaaattacaagatga 844
                  |||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct: 217468085 accaggacagaagcaaagcacaacattcagacgccgcctaatttccaaattacagggtga 217468144

                                                                             
Query: 845       atttgaaaaccgaaccagaaatgttgatgtctatgataagcgtgaaaatcccctcctccc 904
                 ||||||| |||||| |||||| || ||||| | ||||| ||| ||||| ||||| |||||
Sbjct: 217468145 atttgaacaccgaagcagaaacgtggatgtgtgtgatacgcgggaaaaccccctgctccc 217468204

                                                                             
Query: 905       tgaggaggaggaacagagagccattgctaagatcaagatgttggggaacatcaaattcat 964
                  |||| || ||| | ||||||||  ||||||||||   ||||||||| || ||  |||  
Sbjct: 217468205 cgaggcgg-ggagccgagagccacggctaagatcagactgttggggagcaccaggttccc 217468263

                                                                             
Query: 965       tggagaacttggaaagcttgatcttattcatgaatctatccttcataagtgcatcaaaac 1024
                  |||||||||||||||||||||||||| || |||||| |||||| || ||||||||||||
Sbjct: 217468264 cggagaacttggaaagcttgatcttatgcacgaatctgtccttcctaggtgcatcaaaac 217468323

                                                                             
Query: 1025      acttttggnnnnnnngaagagagtccaactcaaagatatgggagaggatttggagtgcct 1084
                  | |||||       |||| | |||| || | |||| | |||||||| |||| || ||||
Sbjct: 217468324 gcctttggaaaaaaagaagggcgtccgaccccaagacacgggagagggtttgcagcgcct 217468383

                                                                             
Query: 1085      ctgtcagataatgaggacagtgggacctaggttagaccatgaacgagccaagtccttaat 1144
                 ||| ||| | |||||||| | |||||||||| ||||||  || |||||| ||||||||||
Sbjct: 217468384 ctgccaggtgatgaggacgg-gggacctaggctagacccggagcgagcccagtccttaat 217468442

                                                                             
Query: 1145      ggatcagtactttgccagaatgtgttccttgatgttaagtaaggaattgccagcaaggat 1204
                 ||| | |||||||||||||||| | | | || ||||||||||||||||||||||||||||
Sbjct: 217468443 ggaccggtactttgccagaatgcgcttcctggtgttaagtaaggaattgccagcaaggat 217468502

                                                                             
Query: 1205      tcgtttcctgctgcaggataccgtagagttgcgagaacatcattgggttcctcgcaaggc 1264
                 |||||||||||||||||| ||||| |||||||||||||| |  |||||||||||||||||
Sbjct: 217468503 tcgtttcctgctgcaggaaaccgtcgagttgcgagaacagccctgggttcctcgcaaggc 217468562

                                                                             
Query: 1265      ttttcttgacaatggaccaaagac-gatcaatcaaatccgtcaagatgcagtaaaagatc 1323
                 |||||||||||||||||||||||| |||||  | ||||||||| ||||||||||||||||
Sbjct: 217468563 ttttcttgacaatggaccaaagaccgatcagccgaatccgtcaggatgcagtaaaagatc 217468622

                                                                             
Query: 1324      taggagtgtttattcctgctcctatggctcaagggatgagaagtgacttctttctggagg 1383
                 | || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217468623 tgggggtgtgtattcctgctcctatggctcaagggatgagaagtgacttctttctggagg 217468682

                                                                             
Query: 1384      gaccgttcatgccacccaggatgaaaatggatagggacccacttggaggacttgctgat- 1442
                 ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| 
Sbjct: 217468683 gaccgttcatgccacccaggatgaaaatggagagggacccacttggaggcctggctgata 217468742

                                                                             
Query: 1443      atgtttggacaaatgccaggtagcggaattggtactggtccaggagttatccaggatagg 1502
                 ||||| |||||| |||||||||| |||||||||||||| ||||||||||||||||| || 
Sbjct: 217468743 atgttcggacaagtgccaggtagtggaattggtactggcccaggagttatccaggacaga 217468802

                                                                             
Query: 1503      ttttcacccaccatggggcgtcatcgttcaaatcaactcttcaatggccatgggggacac 1562
                 |||| ||| || |||||| |||||| |||||||| ||  |||||||||||||||||||||
Sbjct: 217468803 ttttgacctacgatggggtgtcatcattcaaatccacctttcaatggccatgggggacac 217468862

                                                                      
Query: 1563      atcatgcctcccacacaatcgcagtttggggagatgggaggcaagtttatgaa 1615
                 ||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 217468863 atcatgcctcccacacaatcgcagtttggggggatgggaggcaagttgatgaa 217468915


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  509 bits (257), Expect = e-141
 Identities = 260/261 (99%)
 Strand = Plus / Plus

                                                                            
Query: 2182     aggctttcctgaatgtattggaccagtgccccaaactggaggttgacatccctttggtga 2241
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52022099 aggctttcctgaatgtattggaccagtgccccaaactggaggttgacatccctttggtga 52022158

                                                                            
Query: 2242     agtcatatttagcacagtttgctgctcgtgctattatttcagagctggtgagcatttcag 2301
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 52022159 agtcatatttagcacagtttgcagctcgtgctattatttcagagctggtgagcatttcag 52022218

                                                                            
Query: 2302     aactagcgcaaccactggaaagtggcacccactttcctctcttcttactttgtcttcagc 2361
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52022219 aactagcgcaaccactggaaagtggcacccactttcctctcttcttactttgtcttcagc 52022278

                                                                            
Query: 2362     aattagctaaattacaagaccgagaatggttaacagagcttttccaacaaagcaaggtca 2421
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52022279 aattagctaaattacaagaccgagaatggttaacagagcttttccaacaaagcaaggtca 52022338

                                     
Query: 2422     atatgcagaaaatgcttccag 2442
                |||||||||||||||||||||
Sbjct: 52022339 atatgcagaaaatgcttccag 52022359



 Score =  448 bits (226), Expect = e-123
 Identities = 329/358 (91%), Gaps = 4/358 (1%)
 Strand = Plus / Minus

                                                                            
Query: 2809     gtgctctctatgctcttcaggtgcactgctacaacagcaacttcccaaaaggcatgttac 2868
                |||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||| | 
Sbjct: 32831511 gtgccctctatgttcttcaggtgcactgctacaacagcaacttcccaaaaggtatgtaa- 32831453

                                                                            
Query: 2869     tccgcttttttgttcacttctatgacatggaaattattgaggaagaagctttcttggctt 2928
                ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 32831452 tccacttttttgctcacttctatgacatggaaattattgaggaagaagctttctgggctt 32831393

                                                                            
Query: 2929     ggaaagaagatataacccaagagtttcctgggaaaggcaaggctttgttccaggtgaatc 2988
                |||||||||| |||||||||||  |||||||| |||||||||||||||||||||||||||
Sbjct: 32831392 ggaaagaagagataacccaagaaattcctggggaaggcaaggctttgttccaggtgaatc 32831333

                                                                            
Query: 2989     agtggctaacctggctagaaactgctgaagaagaagaatccgaggaagaagctgactaaa 3048
                ||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||||||
Sbjct: 32831332 agtggttaacctggctagaaactgctaaagaagaagaatcagaggaaaaagctgactaaa 32831273

                                                                            
Query: 3049     agaaccagccaaagccttaaattgtgc-aaacatactgttgctatgatgtaactgcattt 3107
                ||||||||||||||||||||||||  |  |||||||| |||||||||||||||| |||||
Sbjct: 32831272 agaaccagccaaagccttaaattgcacttaacatactattgctatgatgtaactacattt 32831213

                                                                          
Query: 3108     gacctaaccactgcgaaaattca-tccgctgtaatg-tttcacaatatttaaagcaga 3163
                ||||||||||||| ||||||||| |  ||||||||| ||||| |||||||||| ||||
Sbjct: 32831212 gacctaaccactgagaaaattcattatgctgtaatgttttcataatatttaaatcaga 32831155



 Score =  430 bits (217), Expect = e-117
 Identities = 217/217 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1968     gaaactgttgtaactgaatatctgaatagtggaaatgcaaacgaagctgtcaatggtgta 2027
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52021802 gaaactgttgtaactgaatatctgaatagtggaaatgcaaacgaagctgtcaatggtgta 52021861

                                                                            
Query: 2028     agagagatgagggctcctaaacactttctccctgagatgttaagcaaagtaatcatcctg 2087
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52021862 agagagatgagggctcctaaacactttctccctgagatgttaagcaaagtaatcatcctg 52021921

                                                                            
Query: 2088     tcattagatagaagtgatgaagataaagaaaaagccagttctttgatcagtttactcaaa 2147
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52021922 tcattagatagaagtgatgaagataaagaaaaagccagttctttgatcagtttactcaaa 52021981

                                                     
Query: 2148     caggaagggatagccacaagtgacaacttcatgcagg 2184
                |||||||||||||||||||||||||||||||||||||
Sbjct: 52021982 caggaagggatagccacaagtgacaacttcatgcagg 52022018



 Score =  426 bits (215), Expect = e-116
 Identities = 215/215 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2646     agcttcttacagtacatttctagtgaagtaaacccacccagcgatgaaacagattcttcc 2705
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52022982 agcttcttacagtacatttctagtgaagtaaacccacccagcgatgaaacagattcttcc 52023041

                                                                            
Query: 2706     tctgctccttccaaagaacagttagagcaggaaaaacaactgcttctttccttcaagcca 2765
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52023042 tctgctccttccaaagaacagttagagcaggaaaaacaactgcttctttccttcaagcca 52023101

                                                                            
Query: 2766     gtaatgcagaagttccttcatgatcatgttgatctacaagtcagtgctctctatgctctt 2825
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52023102 gtaatgcagaagttccttcatgatcatgttgatctacaagtcagtgctctctatgctctt 52023161

                                                   
Query: 2826     caggtgcactgctacaacagcaacttcccaaaagg 2860
                |||||||||||||||||||||||||||||||||||
Sbjct: 52023162 caggtgcactgctacaacagcaacttcccaaaagg 52023196



 Score =  412 bits (208), Expect = e-112
 Identities = 208/208 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2440     cagaaattgatcagaataaggaccgcatgttggagatcttggaaggaaagggactaagct 2499
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52022619 cagaaattgatcagaataaggaccgcatgttggagatcttggaaggaaagggactaagct 52022678

                                                                            
Query: 2500     tcttgttcccactcctcaaattggagaaggaactgttaaagcaaataaagttggatccat 2559
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52022679 tcttgttcccactcctcaaattggagaaggaactgttaaagcaaataaagttggatccat 52022738

                                                                            
Query: 2560     cccctcaaaccatatataaatggattaaagataacatctctcccaaacttcatgtagata 2619
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52022739 cccctcaaaccatatataaatggattaaagataacatctctcccaaacttcatgtagata 52022798

                                            
Query: 2620     aaggatttgtgaacatcttaatgactag 2647
                ||||||||||||||||||||||||||||
Sbjct: 52022799 aaggatttgtgaacatcttaatgactag 52022826



 Score =  373 bits (188), Expect = e-100
 Identities = 216/220 (98%), Gaps = 4/220 (1%)
 Strand = Plus / Plus

                                                                            
Query: 2979     caggtgaatcagtggctaacctggctagaaactgctgaagaagaagaatccgaggaagaa 3038
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52024441 caggtgaatcagtggctaacctggctagaaactgctgaagaagaagaatccgaggaagaa 52024500

                                                                            
Query: 3039     gctgactaaaagaaccagccaaagccttaaattgtgc-aaacatactgttgctatgatgt 3097
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 52024501 gctgactaaaagaaccagccaaagccttaaattgtgcaaaacatactgttgctatgatgt 52024560

                                                                            
Query: 3098     aactgcatttgacctaaccactgcgaaaattca-tccgctgtaatg-tttcacaatattt 3155
                ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 52024561 aactgcatttgacctaaccactgcgaaaattcattccgctgtaatgttttcacaatattt 52024620

                                                        
Query: 3156     aaagcagaa-cacgtcagttaggatttccttctgcataag 3194
                ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 52024621 aaagcagaagcacgtcagttaggatttccttctgcataag 52024660



 Score =  325 bits (164), Expect = 9e-86
 Identities = 164/164 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1460     aggtagcggaattggtactggtccaggagttatccaggataggttttcacccaccatggg 1519
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52019815 aggtagcggaattggtactggtccaggagttatccaggataggttttcacccaccatggg 52019874

                                                                            
Query: 1520     gcgtcatcgttcaaatcaactcttcaatggccatgggggacacatcatgcctcccacaca 1579
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52019875 gcgtcatcgttcaaatcaactcttcaatggccatgggggacacatcatgcctcccacaca 52019934

                                                            
Query: 1580     atcgcagtttggggagatgggaggcaagtttatgaaaagccagg 1623
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52019935 atcgcagtttggggagatgggaggcaagtttatgaaaagccagg 52019978



 Score =  303 bits (153), Expect = 3e-79
 Identities = 153/153 (100%)
 Strand = Plus / Plus

                                                                            
Query: 873      gtctatgataagcgtgaaaatcccctcctccctgaggaggaggaacagagagccattgct 932
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52018192 gtctatgataagcgtgaaaatcccctcctccctgaggaggaggaacagagagccattgct 52018251

                                                                            
Query: 933      aagatcaagatgttggggaacatcaaattcattggagaacttggaaagcttgatcttatt 992
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52018252 aagatcaagatgttggggaacatcaaattcattggagaacttggaaagcttgatcttatt 52018311

                                                 
Query: 993      catgaatctatccttcataagtgcatcaaaaca 1025
                |||||||||||||||||||||||||||||||||
Sbjct: 52018312 catgaatctatccttcataagtgcatcaaaaca 52018344



 Score =  285 bits (144), Expect = 7e-74
 Identities = 144/144 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1320     gatctaggagtgtttattcctgctcctatggctcaagggatgagaagtgacttctttctg 1379
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52019583 gatctaggagtgtttattcctgctcctatggctcaagggatgagaagtgacttctttctg 52019642

                                                                            
Query: 1380     gagggaccgttcatgccacccaggatgaaaatggatagggacccacttggaggacttgct 1439
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52019643 gagggaccgttcatgccacccaggatgaaaatggatagggacccacttggaggacttgct 52019702

                                        
Query: 1440     gatatgtttggacaaatgccaggt 1463
                ||||||||||||||||||||||||
Sbjct: 52019703 gatatgtttggacaaatgccaggt 52019726



 Score =  283 bits (143), Expect = 3e-73
 Identities = 143/143 (100%)
 Strand = Plus / Plus

                                                                            
Query: 429      agcgagttcctggggaaaaccccagggcaaaacgctcagaaatggattcctgcacgaagc 488
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52015842 agcgagttcctggggaaaaccccagggcaaaacgctcagaaatggattcctgcacgaagc 52015901

                                                                            
Query: 489      actagacgagatgacaactccgcagcaaacaactccgcaaatgaaaaagaacgacatgat 548
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52015902 actagacgagatgacaactccgcagcaaacaactccgcaaatgaaaaagaacgacatgat 52015961

                                       
Query: 549      gcaatcttcaggaaagtaagagg 571
                |||||||||||||||||||||||
Sbjct: 52015962 gcaatcttcaggaaagtaagagg 52015984



 Score =  264 bits (133), Expect = 3e-67
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                            
Query: 674      gattgtggacaaagccctagaagagccaaagtatagctcactgtatgctcagctatgtct 733
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52017821 gattgtggacaaagccctagaagagccaaagtatagctcactgtatgctcagctatgtct 52017880

                                                                            
Query: 734      gcgattggcagaagatgcaccaaactttgatggcccagcagcagagggtcagccaggaca 793
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52017881 gcgattggcagaagatgcaccaaactttgatggcccagcagcagagggtcagccaggaca 52017940

                             
Query: 794      gaagcaaagcaca 806
                |||||||||||||
Sbjct: 52017941 gaagcaaagcaca 52017953



 Score =  254 bits (128), Expect = 3e-64
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1735     agattagcctgaggcctgctcagtctttcctaatgaataaaaatcaagtgccaaagcttc 1794
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52021326 agattagcctgaggcctgctcagtctttcctaatgaataaaaatcaagtgccaaagcttc 52021385

                                                                            
Query: 1795     agccccagataactatgatccctcctagtgcacaaccaccacgcactcaaacaccacctc 1854
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52021386 agccccagataactatgatccctcctagtgcacaaccaccacgcactcaaacaccacctc 52021445

                        
Query: 1855     tgggacag 1862
                ||||||||
Sbjct: 52021446 tgggacag 52021453



 Score =  252 bits (127), Expect = 1e-63
 Identities = 130/131 (99%)
 Strand = Plus / Plus

                                                                            
Query: 2858     aggcatgttactccgcttttttgttcacttctatgacatggaaattattgaggaagaagc 2917
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52023282 aggcatgttactccgcttttttgttcacttctatgacatggaaattattgaggaagaagc 52023341

                                                                            
Query: 2918     tttcttggcttggaaagaagatataacccaagagtttcctgggaaaggcaaggctttgtt 2977
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52023342 tttcttggcttggaaagaagatataacccaagagtttcctgggaaaggcaaggctttgtt 52023401

                           
Query: 2978     ccaggtgaatc 2988
                |||||| ||||
Sbjct: 52023402 ccaggtaaatc 52023412



 Score =  246 bits (124), Expect = 6e-62
 Identities = 127/128 (99%)
 Strand = Plus / Plus

                                                                            
Query: 237      aggtttttcgtttctcccatccccttccctccccacccatccattaatattattcttttg 296
                ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 52014681 aggtttttcgtttctcccatccctttccctccccacccatccattaatattattcttttg 52014740

                                                                            
Query: 297      aagattcttcgttgtcaagccgccaaagtggagagtgcgattgcagaagggggtgcttct 356
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52014741 aagattcttcgttgtcaagccgccaaagtggagagtgcgattgcagaagggggtgcttct 52014800

                        
Query: 357      cgtttcag 364
                ||||||||
Sbjct: 52014801 cgtttcag 52014808



 Score =  232 bits (117), Expect = 1e-57
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        ttcagacacgcctcagcgccagcagcgagtcggagctctatggaggtggcggcgagtatc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52013091 ttcagacacgcctcagcgccagcagcgagtcggagctctatggaggtggcggcgagtatc 52013150

                                                                         
Query: 61       gggtggtggctgcagcagcgactcctctgagctgagcgtttcaagccggtcccgact 117
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52013151 gggtggtggctgcagcagcgactcctctgagctgagcgtttcaagccggtcccgact 52013207



 Score =  230 bits (116), Expect = 4e-57
 Identities = 116/116 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1621     aggggctaagccagctctaccataaccagagtcagggactcttatcccagctgcaaggac 1680
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52020624 aggggctaagccagctctaccataaccagagtcagggactcttatcccagctgcaaggac 52020683

                                                                        
Query: 1681     agtcgaaggatatgccacctcggttttctaagaaaggacagcttaatgcagatgag 1736
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52020684 agtcgaaggatatgccacctcggttttctaagaaaggacagcttaatgcagatgag 52020739



 Score =  214 bits (108), Expect = 2e-52
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1861     agacacctcagcttggtctcaaaactaatccaccactaatccaggaaaagcctgccaaaa 1920
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52021602 agacacctcagcttggtctcaaaactaatccaccactaatccaggaaaagcctgccaaaa 52021661

                                                                
Query: 1921     ccagtaaaaagccaccaccatcaaaggaagaactgcttaaactaactg 1968
                ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52021662 ccagtaaaaagccaccaccatcaaaggaagaactgcttaaactaactg 52021709



 Score =  206 bits (104), Expect = 6e-50
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                            
Query: 571      gcatactaaataagcttactcctgaaaagtttgacaagctatgccttgagctcctcaatg 630
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52016846 gcatactaaataagcttactcctgaaaagtttgacaagctatgccttgagctcctcaatg 52016905

                                                            
Query: 631      tgggtgtagagtctaaactcatccttaaaggggtcatactgctg 674
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52016906 tgggtgtagagtctaaactcatccttaaaggggtcatactgctg 52016949



 Score =  202 bits (102), Expect = 9e-49
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1219     aggataccgtagagttgcgagaacatcattgggttcctcgcaaggcttttcttgacaatg 1278
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52019168 aggataccgtagagttgcgagaacatcattgggttcctcgcaaggcttttcttgacaatg 52019227

                                                          
Query: 1279     gaccaaagacgatcaatcaaatccgtcaagatgcagtaaaag 1320
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52019228 gaccaaagacgatcaatcaaatccgtcaagatgcagtaaaag 52019269



 Score =  192 bits (97), Expect = 8e-46
 Identities = 97/97 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1040     gaagagagtccaactcaaagatatgggagaggatttggagtgcctctgtcagataatgag 1099
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52018707 gaagagagtccaactcaaagatatgggagaggatttggagtgcctctgtcagataatgag 52018766

                                                     
Query: 1100     gacagtgggacctaggttagaccatgaacgagccaag 1136
                |||||||||||||||||||||||||||||||||||||
Sbjct: 52018767 gacagtgggacctaggttagaccatgaacgagccaag 52018803



 Score =  172 bits (87), Expect = 8e-40
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1135     agtccttaatggatcagtactttgccagaatgtgttccttgatgttaagtaaggaattgc 1194
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52018980 agtccttaatggatcagtactttgccagaatgtgttccttgatgttaagtaaggaattgc 52019039

                                           
Query: 1195     cagcaaggattcgtttcctgctgcagg 1221
                |||||||||||||||||||||||||||
Sbjct: 52019040 cagcaaggattcgtttcctgctgcagg 52019066



 Score =  135 bits (68), Expect = 2e-28
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                            
Query: 363      agtgcttcttcgggcggaggaggaagtaggggtgcacctcagcactatcccaagactgct 422
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52015131 agtgcttcttcgggcggaggaggaagtaggggtgcacctcagcactatcccaagactgct 52015190

                        
Query: 423      ggcaacag 430
                ||||||||
Sbjct: 52015191 ggcaacag 52015198



 Score =  133 bits (67), Expect = 7e-28
 Identities = 67/67 (100%)
 Strand = Plus / Plus

                                                                            
Query: 807      acattcagacgcctcctaatttccaaattacaagatgaatttgaaaaccgaaccagaaat 866
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52018041 acattcagacgcctcctaatttccaaattacaagatgaatttgaaaaccgaaccagaaat 52018100

                       
Query: 867      gttgatg 873
                |||||||
Sbjct: 52018101 gttgatg 52018107



 Score =  119 bits (60), Expect = 1e-23
 Identities = 63/64 (98%)
 Strand = Plus / Plus

                                                                            
Query: 177      cgtcccgacgaccggatcccgaggaggcagctgcggcggcagctgctgagttctcggtga 236
                ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 52013267 cgtcccgacgaccggatcctgaggaggcagctgcggcggcagctgctgagttctcggtga 52013326

                    
Query: 237      aggt 240
                ||||
Sbjct: 52013327 aggt 52013330


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 99,196,139
Number of extensions: 258
Number of successful extensions: 258
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 31
Length of query: 3201
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 3179
Effective length of database: 2,808,408,574
Effective search space: 8927930856746
Effective search space used: 8927930856746
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 19 (38.2 bits)
S2: 30 (60.0 bits)