Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007720
(1480 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069445.1| GMP reductase 1 [Bos taurus]. 683 0.0
Alignment gi|NP_001033208.1| GMP reductase 2 [Bos taurus]. 571 e-163
Alignment gi|NP_001029588.1| inosine-5'-monophosphate dehydrogenase 2 [Bo... 122 6e-28
Alignment gi|NP_001071309.1| inosine-5'-monophosphate dehydrogenase 1 [Bo... 121 2e-27
Alignment gi|XP_002690582.1| PREDICTED: GMP reductase 1-like [Bos taurus]. 103 3e-22
>ref|NP_001069445.1| GMP reductase 1 [Bos taurus].
Length = 345
Score = 683 bits (1763), Expect = 0.0
Identities = 340/345 (98%), Positives = 344/345 (99%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT
Sbjct: 1 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGK+DLEKMS+ILEAV
Sbjct: 61 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKDDLEKMSNILEAV 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVKFICLDVANGYSEHFVEFVKLVR++FPEHTIMAGNVVTGEMVEELILSGADIIKVGV
Sbjct: 121 PQVKFICLDVANGYSEHFVEFVKLVRSRFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM
Sbjct: 181 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 240
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRA EGKTVEVPYKGD
Sbjct: 241 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRAPEGKTVEVPYKGD 300
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS
Sbjct: 301 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 345
>ref|NP_001033208.1| GMP reductase 2 [Bos taurus].
Length = 348
Score = 571 bits (1471), Expect = e-163
Identities = 274/345 (79%), Positives = 313/345 (90%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MP ID D+KLDFKDVLLRPKRS+LKSR+EVDL R+F FRNSKQ Y+GIPII ANMDTVGT
Sbjct: 1 MPHIDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFAFRNSKQMYTGIPIIAANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMA V+ + S+FTA+HKHY+L+ WK FA+ +P+CL+H+A SSG+G +D E++ IL A+
Sbjct: 61 FEMAKVLCKFSLFTAVHKHYSLEQWKEFASQNPDCLEHLAASSGTGSSDFEQLEQILNAI 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVK++CLDVANGYSEHFVEFVK VR +FPEHTIMAGNVVTGEMVEELILSGADIIKVG+
Sbjct: 121 PQVKYVCLDVANGYSEHFVEFVKDVRKRFPEHTIMAGNVVTGEMVEELILSGADIIKVGI 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTR KTGVGYPQLSAV+ECAD+AHGLKGHIISDGGC+CPGDVAKAFGAGADFVM
Sbjct: 181 GPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVM 240
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGM +GH+E GE+IERNG+K KLFYGMSSE AMKK++GGVAEYRASEGKTVEVP+KGD
Sbjct: 241 LGGMLAGHSESGGELIERNGRKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGD 300
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VE+TI DI+GG+RSTCTYVGAAK KELSRR TFIRVTQQ +FS
Sbjct: 301 VEHTIRDIIGGIRSTCTYVGAAKQKELSRRTTFIRVTQQVKPIFS 345
>ref|NP_001029588.1| inosine-5'-monophosphate dehydrogenase 2 [Bos taurus].
Length = 514
Score = 122 bits (307), Expect = 6e-28
Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 7/231 (3%)
Frame = +1
Query: 388 GSGKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGE 567
G+ ++D ++ + +A V + LD + G S + +K ++ K+P ++ GNVVT
Sbjct: 251 GTHEDDKYRLDLLSQA--GVDVVVLDSSQGNSIFQINMIKYIKEKYPSIQVIGGNVVTAA 308
Query: 568 MVEELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCT 747
+ LI +G D ++VG+G GS+C T+ G PQ +AV + ++ A +I+DGG
Sbjct: 309 QAKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQ 368
Query: 748 CPGDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVA 927
G +AKA GA VM+G + + TE GE +G +LK + GM S AM KH
Sbjct: 369 NVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQN 428
Query: 928 EY-------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
Y + ++G + V KG + + ++ G++ +C +GA L ++
Sbjct: 429 RYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQV 479
>ref|NP_001071309.1| inosine-5'-monophosphate dehydrogenase 1 [Bos taurus].
Length = 571
Score = 121 bits (303), Expect = 2e-27
Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 7/244 (2%)
Frame = +1
Query: 349 NHPECLQHVAVSSGSGKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFP 528
+H + L AV G+ ++D ++ + +A V I LD + G S + + V ++ K+P
Sbjct: 297 SHKQLLCGAAV--GTREDDKYRLDLLTQAGADV--IVLDSSQGNSVYQIAMVHYIKQKYP 352
Query: 529 EHTIMAGNVVTGEMVEELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAH 708
++ GNVVT + LI +G D ++VG+G GS+C T+ G PQ +AV + A+ A
Sbjct: 353 HLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYAR 412
Query: 709 GLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMS 888
+I+DGG G V KA GA VM+G + + TE GE +G +LK + GM
Sbjct: 413 RFGVPVIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMG 472
Query: 889 SETAMKKHSGGVAEY-------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAK 1047
S AM+K S Y + ++G + + KG ++ + ++ G++ C +GA
Sbjct: 473 SLDAMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARS 532
Query: 1048 LKEL 1059
L L
Sbjct: 533 LSVL 536
>ref|XP_002690582.1| PREDICTED: GMP reductase 1-like [Bos taurus].
Length = 68
Score = 103 bits (258), Expect = 3e-22
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = +1
Query: 937 ASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
ASEGKTVEVP+KGDVE+TI DILGG+RSTCTYVGAAKLKELSRR TFIRVTQQ N +FS
Sbjct: 7 ASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFS 65
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,954,416
Number of extensions: 1676293
Number of successful extensions: 8579
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8508
Number of HSP's successfully gapped: 5
Length of query: 493
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 387
Effective length of database: 14,174,046
Effective search space: 5485355802
Effective search space used: 5485355802
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007720
(1480 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545353.2| PREDICTED: similar to guanosine monophosphate r... 681 0.0
Alignment gi|XP_858369.1| PREDICTED: similar to guanosine monophosphate r... 673 0.0
Alignment gi|XP_850127.1| PREDICTED: similar to GMP reductase 2 (Guanosin... 578 e-165
Alignment gi|XP_860697.1| PREDICTED: similar to GMP reductase 2 (Guanosin... 523 e-148
Alignment gi|XP_860663.1| PREDICTED: similar to GMP reductase 2 (Guanosin... 501 e-142
Alignment gi|XP_860565.1| PREDICTED: similar to GMP reductase 2 (Guanosin... 472 e-133
Alignment gi|XP_537390.2| PREDICTED: similar to GMP reductase 2 (Guanosin... 362 e-100
Alignment gi|XP_862874.1| PREDICTED: similar to Inosine-5-monophosphate d... 123 5e-28
Alignment gi|XP_533835.2| PREDICTED: similar to inosine 5-phosphate dehyd... 123 5e-28
Alignment gi|XP_862835.1| PREDICTED: similar to Inosine-5-monophosphate d... 123 5e-28
>ref|XP_545353.2| PREDICTED: similar to guanosine monophosphate reductase isoform 1
[Canis familiaris].
Length = 345
Score = 681 bits (1758), Expect = 0.0
Identities = 338/345 (97%), Positives = 344/345 (99%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MPRIDADLKLDFKDVLLRPKRSSL+SRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT
Sbjct: 1 MPRIDADLKLDFKDVLLRPKRSSLRSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMAVVMSQHSMFTA+HKHYTLDDWKLFAA+HPECLQHVAVSSGSGK+DLEKMS ILEAV
Sbjct: 61 FEMAVVMSQHSMFTAVHKHYTLDDWKLFAAHHPECLQHVAVSSGSGKSDLEKMSGILEAV 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV
Sbjct: 121 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM
Sbjct: 181 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 240
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGMFSGHTECAGEVIE+NGQKLKLFYGMSSETAMKKH+GGVAEYRASEGKTVEVPYKGD
Sbjct: 241 LGGMFSGHTECAGEVIEKNGQKLKLFYGMSSETAMKKHAGGVAEYRASEGKTVEVPYKGD 300
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS
Sbjct: 301 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 345
>ref|XP_858369.1| PREDICTED: similar to guanosine monophosphate reductase isoform 2
[Canis familiaris].
Length = 355
Score = 673 bits (1737), Expect = 0.0
Identities = 338/355 (95%), Positives = 344/355 (96%), Gaps = 10/355 (2%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEV----------DLERTFTFRNSKQTYSGIPI 228
MPRIDADLKLDFKDVLLRPKRSSL+SRAEV DLERTFTFRNSKQTYSGIPI
Sbjct: 1 MPRIDADLKLDFKDVLLRPKRSSLRSRAEVGTSESRSAPVDLERTFTFRNSKQTYSGIPI 60
Query: 229 IVANMDTVGTFEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDL 408
IVANMDTVGTFEMAVVMSQHSMFTA+HKHYTLDDWKLFAA+HPECLQHVAVSSGSGK+DL
Sbjct: 61 IVANMDTVGTFEMAVVMSQHSMFTAVHKHYTLDDWKLFAAHHPECLQHVAVSSGSGKSDL 120
Query: 409 EKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELIL 588
EKMS ILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELIL
Sbjct: 121 EKMSGILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELIL 180
Query: 589 SGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAK 768
SGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAK
Sbjct: 181 SGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAK 240
Query: 769 AFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEG 948
AFGAGADFVMLGGMFSGHTECAGEVIE+NGQKLKLFYGMSSETAMKKH+GGVAEYRASEG
Sbjct: 241 AFGAGADFVMLGGMFSGHTECAGEVIEKNGQKLKLFYGMSSETAMKKHAGGVAEYRASEG 300
Query: 949 KTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
KTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS
Sbjct: 301 KTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 355
>ref|XP_850127.1| PREDICTED: similar to GMP reductase 2 (Guanosine 5-monophosphate
oxidoreductase 2) (Guanosine monophosphate reductase 2)
isoform 3 [Canis familiaris].
Length = 348
Score = 578 bits (1490), Expect = e-165
Identities = 278/345 (80%), Positives = 317/345 (91%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MP ID+D+KLDFKDVLLRPKRS+LKSR+EVDL R+F+FRNSKQ Y+GIPII ANMDTVGT
Sbjct: 1 MPHIDSDIKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQVYTGIPIIAANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMA V+ + S+FTA+HKHY+L WK FA+ +P+CL+H+A SSG+G +D E++ ILEA+
Sbjct: 61 FEMAKVLCKFSLFTAVHKHYSLQQWKEFASQNPDCLEHLAASSGTGSSDFEQLEQILEAI 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVK+ICLDVANGYSEHFVEFVK VR +FPEHTIMAGNVVTGEMVEELILSGADIIKVG+
Sbjct: 121 PQVKYICLDVANGYSEHFVEFVKDVRKRFPEHTIMAGNVVTGEMVEELILSGADIIKVGI 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTR KTGVGYPQLSAV+ECAD+AHGLKGHIISDGGC+CPGDVAKAFGAGADFVM
Sbjct: 181 GPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVM 240
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGM +GH+E GE+IER+G+K KLFYGMSSE AMKK++GGVAEYRASEGKTVEVP+KGD
Sbjct: 241 LGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGD 300
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VE+TI DILGG+RSTCTYVGAAKLKELSRR TFIRVTQQ N +FS
Sbjct: 301 VEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFS 345
>ref|XP_860697.1| PREDICTED: similar to GMP reductase 2 (Guanosine 5-monophosphate
oxidoreductase 2) (Guanosine monophosphate reductase 2)
isoform 7 [Canis familiaris].
Length = 320
Score = 523 bits (1346), Expect = e-148
Identities = 262/345 (75%), Positives = 294/345 (85%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MP ID+D+KLDFKDVLLRPKRS+LKSR+EVDL R+F+FRNSKQ Y+GIPII ANMDTVGT
Sbjct: 1 MPHIDSDIKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQVYTGIPIIAANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMA V+ +H +A SSG+G +D E++ ILEA+
Sbjct: 61 FEMAKVLCKH----------------------------LAASSGTGSSDFEQLEQILEAI 92
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVK+ICLDVANGYSEHFVEFVK VR +FPEHTIMAGNVVTGEMVEELILSGADIIKVG+
Sbjct: 93 PQVKYICLDVANGYSEHFVEFVKDVRKRFPEHTIMAGNVVTGEMVEELILSGADIIKVGI 152
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTR KTGVGYPQLSAV+ECAD+AHGLKGHIISDGGC+CPGDVAKAFGAGADFVM
Sbjct: 153 GPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVM 212
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGM +GH+E GE+IER+G+K KLFYGMSSE AMKK++GGVAEYRASEGKTVEVP+KGD
Sbjct: 213 LGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGD 272
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VE+TI DILGG+RSTCTYVGAAKLKELSRR TFIRVTQQ N +FS
Sbjct: 273 VEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFS 317
>ref|XP_860663.1| PREDICTED: similar to GMP reductase 2 (Guanosine 5-monophosphate
oxidoreductase 2) (Guanosine monophosphate reductase 2)
isoform 6 [Canis familiaris].
Length = 315
Score = 501 bits (1291), Expect = e-142
Identities = 249/345 (72%), Positives = 286/345 (82%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MP ID+D+KLDFKDVLLRPKRS+LKSR+EVDL R+F+FRNSKQ Y+GIPII ANMDTVGT
Sbjct: 1 MPHIDSDIKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQVYTGIPIIAANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMA V+ + S+FTA+HKHY+L WK FA+ +P+CL+H+A SSG+G +D E++ ILEA+
Sbjct: 61 FEMAKVLCKFSLFTAVHKHYSLQQWKEFASQNPDCLEHLAASSGTGSSDFEQLEQILEAI 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQ AGNVVTGEMVEELILSGADIIKVG+
Sbjct: 121 PQ---------------------------------AGNVVTGEMVEELILSGADIIKVGI 147
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTR KTGVGYPQLSAV+ECAD+AHGLKGHIISDGGC+CPGDVAKAFGAGADFVM
Sbjct: 148 GPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVM 207
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGM +GH+E GE+IER+G+K KLFYGMSSE AMKK++GGVAEYRASEGKTVEVP+KGD
Sbjct: 208 LGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGD 267
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VE+TI DILGG+RSTCTYVGAAKLKELSRR TFIRVTQQ N +FS
Sbjct: 268 VEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFS 312
>ref|XP_860565.1| PREDICTED: similar to GMP reductase 2 (Guanosine 5-monophosphate
oxidoreductase 2) (Guanosine monophosphate reductase 2)
isoform 4 [Canis familiaris].
Length = 296
Score = 472 bits (1214), Expect = e-133
Identities = 225/281 (80%), Positives = 257/281 (91%)
Frame = +1
Query: 271 VVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAVPQVK 450
+V + S+FTA+HKHY+L WK FA+ +P+CL+H+A SSG+G +D E++ ILEA+PQVK
Sbjct: 13 LVAEKFSLFTAVHKHYSLQQWKEFASQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQVK 72
Query: 451 FICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGVGPGS 630
+ICLDVANGYSEHFVEFVK VR +FPEHTIMAGNVVTGEMVEELILSGADIIKVG+GPGS
Sbjct: 73 YICLDVANGYSEHFVEFVKDVRKRFPEHTIMAGNVVTGEMVEELILSGADIIKVGIGPGS 132
Query: 631 VCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGM 810
VCTTR KTGVGYPQLSAV+ECAD+AHGLKGHIISDGGC+CPGDVAKAFGAGADFVMLGGM
Sbjct: 133 VCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGM 192
Query: 811 FSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGDVENT 990
+GH+E GE+IER+G+K KLFYGMSSE AMKK++GGVAEYRASEGKTVEVP+KGDVE+T
Sbjct: 193 LAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGDVEHT 252
Query: 991 ILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
I DILGG+RSTCTYVGAAKLKELSRR TFIRVTQQ N +FS
Sbjct: 253 IRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFS 293
>ref|XP_537390.2| PREDICTED: similar to GMP reductase 2 (Guanosine 5-monophosphate
oxidoreductase 2) (Guanosine monophosphate reductase 2)
isoform 1 [Canis familiaris].
Length = 242
Score = 362 bits (929), Expect = e-100
Identities = 172/218 (78%), Positives = 199/218 (91%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MP ID+D+KLDFKDVLLRPKRS+LKSR+EVDL R+F+FRNSKQ Y+GIPII ANMDTVGT
Sbjct: 1 MPHIDSDIKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQVYTGIPIIAANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMA V+ + S+FTA+HKHY+L WK FA+ +P+CL+H+A SSG+G +D E++ ILEA+
Sbjct: 61 FEMAKVLCKFSLFTAVHKHYSLQQWKEFASQNPDCLEHLAASSGTGSSDFEQLEQILEAI 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVK+ICLDVANGYSEHFVEFVK VR +FPEHTIMAGNVVTGEMVEELILSGADIIKVG+
Sbjct: 121 PQVKYICLDVANGYSEHFVEFVKDVRKRFPEHTIMAGNVVTGEMVEELILSGADIIKVGI 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIIS 732
GPGSVCTTR KTGVGYPQLSAV+ECAD+AHGLKGHIIS
Sbjct: 181 GPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIIS 218
>ref|XP_862874.1| PREDICTED: similar to Inosine-5-monophosphate dehydrogenase 2 (IMP
dehydrogenase 2) (IMPDH-II) (IMPD 2) isoform 8 [Canis
familiaris].
Length = 541
Score = 123 bits (308), Expect = 5e-28
Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Frame = +1
Query: 394 GKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMV 573
G ++ +K L A V + LD + G S + +K ++ K+P ++ GNVVT
Sbjct: 278 GTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKEKYPTLQVIGGNVVTAAQA 337
Query: 574 EELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCP 753
+ LI +G D ++VG+G GS+C T+ G PQ +AV + ++ A +I+DGG
Sbjct: 338 KNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNV 397
Query: 754 GDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEY 933
G +AKA GA VM+G + + TE GE +G +LK + GM S AM KH Y
Sbjct: 398 GHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRY 457
Query: 934 -------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
+ ++G + V KG + + ++ G++ +C +GA L ++
Sbjct: 458 FSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQV 506
>ref|XP_533835.2| PREDICTED: similar to inosine 5-phosphate dehydrogenase 2 isoform 1
[Canis familiaris].
Length = 526
Score = 123 bits (308), Expect = 5e-28
Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Frame = +1
Query: 394 GKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMV 573
G ++ +K L A V + LD + G S + +K ++ K+P ++ GNVVT
Sbjct: 263 GTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKEKYPTLQVIGGNVVTAAQA 322
Query: 574 EELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCP 753
+ LI +G D ++VG+G GS+C T+ G PQ +AV + ++ A +I+DGG
Sbjct: 323 KNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNV 382
Query: 754 GDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEY 933
G +AKA GA VM+G + + TE GE +G +LK + GM S AM KH Y
Sbjct: 383 GHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRY 442
Query: 934 -------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
+ ++G + V KG + + ++ G++ +C +GA L ++
Sbjct: 443 FSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQV 491
>ref|XP_862835.1| PREDICTED: similar to Inosine-5-monophosphate dehydrogenase 2 (IMP
dehydrogenase 2) (IMPDH-II) (IMPD 2) isoform 7 [Canis
familiaris].
Length = 520
Score = 123 bits (308), Expect = 5e-28
Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Frame = +1
Query: 394 GKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMV 573
G ++ +K L A V + LD + G S + +K ++ K+P ++ GNVVT
Sbjct: 257 GTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKEKYPTLQVIGGNVVTAAQA 316
Query: 574 EELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCP 753
+ LI +G D ++VG+G GS+C T+ G PQ +AV + ++ A +I+DGG
Sbjct: 317 KNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNV 376
Query: 754 GDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEY 933
G +AKA GA VM+G + + TE GE +G +LK + GM S AM KH Y
Sbjct: 377 GHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRY 436
Query: 934 -------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
+ ++G + V KG + + ++ G++ +C +GA L ++
Sbjct: 437 FSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQV 485
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,144,618
Number of extensions: 1670856
Number of successful extensions: 8529
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 8445
Number of HSP's successfully gapped: 17
Length of query: 493
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 386
Effective length of database: 15,307,552
Effective search space: 5908715072
Effective search space used: 5908715072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007720
(1480 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079784.1| GMP reductase 1 [Mus musculus]. 671 0.0
Alignment gi|NP_818773.1| GMP reductase 2 [Mus musculus]. 566 e-161
Alignment gi|NP_035960.2| inosine-5'-monophosphate dehydrogenase 2 [Mus m... 124 1e-28
Alignment gi|XP_001478203.2| PREDICTED: inosine-5'-monophosphate dehydrog... 124 2e-28
Alignment gi|NP_035959.2| inosine-5'-monophosphate dehydrogenase 1 [Mus m... 121 2e-27
>ref|NP_079784.1| GMP reductase 1 [Mus musculus].
Length = 345
Score = 671 bits (1730), Expect = 0.0
Identities = 331/344 (96%), Positives = 340/344 (98%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MPRIDADLKLDFKDVLLRPKRSSLKSR+EVDLERTFTFRNSKQTYSGIPIIVANMDTVGT
Sbjct: 1 MPRIDADLKLDFKDVLLRPKRSSLKSRSEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMAVVMSQH+MFTA+HKHY+LDDWK FA HPECLQHVAVSSGSG+NDLE+MS ILEAV
Sbjct: 61 FEMAVVMSQHAMFTAVHKHYSLDDWKCFAETHPECLQHVAVSSGSGQNDLERMSRILEAV 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVKFICLDVANGYSEHFVEFVKLVR+KFPEHTIMAGNVVTGEMVEELILSGADIIKVGV
Sbjct: 121 PQVKFICLDVANGYSEHFVEFVKLVRSKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM
Sbjct: 181 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 240
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGMFSGHTECAGEVIERNGQKLKLFYGMSS+TAMKKH+GGVAEYRASEGKTVEVPYKGD
Sbjct: 241 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSDTAMKKHAGGVAEYRASEGKTVEVPYKGD 300
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVF 1110
VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVF
Sbjct: 301 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVF 344
>ref|NP_818773.1| GMP reductase 2 [Mus musculus].
Length = 348
Score = 566 bits (1459), Expect = e-161
Identities = 275/345 (79%), Positives = 313/345 (90%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MP ID D+KLDFKDVLLRPKRS+LKSR+EV+L R+F+FRNSKQ YSGIP+I ANMDTVGT
Sbjct: 1 MPHIDNDVKLDFKDVLLRPKRSTLKSRSEVELTRSFSFRNSKQMYSGIPVIAANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMA V+ + S+FTAIHKHY++ W+ FA+ +P+CL+ +A SSGSG D E++ ILEA+
Sbjct: 61 FEMARVLCKFSLFTAIHKHYSIHQWQEFASQNPDCLECLAASSGSGSADFEQLEQILEAI 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVK+ICLDVANGYSEHFVEFVK VR +FP+HTIMAGNVVTGEMVEELILSGADIIKVG+
Sbjct: 121 PQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGI 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTR KTGVGYPQLSAV+ECAD+AHGLKGHIISDGGC+CPGDVAKAFGAGADFVM
Sbjct: 181 GPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVM 240
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGM +GH+E GE+IER+G+K KLFYGMSSE AMKK+SGGVAEYRASEGK VEVP+KGD
Sbjct: 241 LGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYSGGVAEYRASEGKIVEVPFKGD 300
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VE+TI DILGG+RSTCTYVGAAKLKELSRR TFIRVTQQ N +FS
Sbjct: 301 VEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFS 345
>ref|NP_035960.2| inosine-5'-monophosphate dehydrogenase 2 [Mus musculus].
Length = 514
Score = 124 bits (312), Expect = 1e-28
Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 7/229 (3%)
Frame = +1
Query: 394 GKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMV 573
G ++ +K L A+ V + LD + G S + +K ++ K+P ++ GNVVT
Sbjct: 251 GTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYIKEKYPSLQVIGGNVVTAAQA 310
Query: 574 EELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCP 753
+ LI +G D ++VG+G GS+C T+ G PQ +AV + ++ A +I+DGG
Sbjct: 311 KNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNV 370
Query: 754 GDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEY 933
G +AKA GA VM+G + + TE GE +G +LK + GM S AM KH Y
Sbjct: 371 GHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRY 430
Query: 934 -------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
+ ++G + V KG + + ++ G++ +C +GA L ++
Sbjct: 431 FSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQV 479
>ref|XP_001478203.2| PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Mus
musculus].
Length = 544
Score = 124 bits (311), Expect = 2e-28
Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 7/229 (3%)
Frame = +1
Query: 394 GKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMV 573
G ++ +K L A+ V + LD + G S + +K ++ K+P ++ GNVVT
Sbjct: 281 GTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYIKEKYPSLQVIGGNVVTAAQA 340
Query: 574 EELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCP 753
+ LI +G D ++VG+G GS+C T+ G PQ +AV + ++ A +I+DGG
Sbjct: 341 KNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNV 400
Query: 754 GDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEY 933
G +AKA GA VM+G + + TE GE +G +LK + GM S AM KH Y
Sbjct: 401 GHIAKALAFGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRY 460
Query: 934 -------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
+ ++G + V KG + + ++ G++ +C +GA L ++
Sbjct: 461 FSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQV 509
>ref|NP_035959.2| inosine-5'-monophosphate dehydrogenase 1 [Mus musculus].
Length = 514
Score = 121 bits (303), Expect = 2e-27
Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 7/244 (2%)
Frame = +1
Query: 349 NHPECLQHVAVSSGSGKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFP 528
+H + L AV G+ ++D ++ + +A V I LD + G S + + V ++ K+P
Sbjct: 240 SHKQLLCGAAV--GTREDDKYRLDLLTQAGADV--IVLDSSQGNSVYQIAMVHYIKQKYP 295
Query: 529 EHTIMAGNVVTGEMVEELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAH 708
++ GNVVT + LI +G D ++VG+G GS+C T+ G PQ +AV + A+ A
Sbjct: 296 HLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYAR 355
Query: 709 GLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMS 888
+I+DGG G V KA GA VM+G + + TE GE +G +LK + GM
Sbjct: 356 RFGVPVIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMG 415
Query: 889 SETAMKKHSGGVAEY-------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAK 1047
S AM+K S Y + ++G + + KG ++ + ++ G++ C +GA
Sbjct: 416 SLDAMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGAQS 475
Query: 1048 LKEL 1059
L L
Sbjct: 476 LSVL 479
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,869,421
Number of extensions: 1347225
Number of successful extensions: 6804
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6740
Number of HSP's successfully gapped: 5
Length of query: 493
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 388
Effective length of database: 12,463,779
Effective search space: 4835946252
Effective search space used: 4835946252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007720
(1480 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929155.2| PREDICTED: LOW QUALITY PROTEIN: GMP reductas... 655 0.0
Alignment gi|XP_001928049.1| PREDICTED: hypothetical protein LOC100154068... 575 e-164
Alignment gi|XP_003358476.1| PREDICTED: inosine-5'-monophosphate dehydrog... 123 2e-28
Alignment gi|XP_003132249.2| PREDICTED: inosine-5'-monophosphate dehydrog... 123 2e-28
Alignment gi|XP_003360194.1| PREDICTED: inosine-5'-monophosphate dehydrog... 121 1e-27
>ref|XP_001929155.2| PREDICTED: LOW QUALITY PROTEIN: GMP reductase 1 [Sus scrofa].
Length = 343
Score = 655 bits (1691), Expect = 0.0
Identities = 333/345 (96%), Positives = 334/345 (96%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT
Sbjct: 1 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV
Sbjct: 61 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV
Sbjct: 121 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM
Sbjct: 181 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 240
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD
Sbjct: 241 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 300
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VE T LGGLRSTCT G +ELSRRATFIRVTQQHNTVFS
Sbjct: 301 VE-TRFXYLGGLRSTCTTXG-PPTQELSRRATFIRVTQQHNTVFS 343
>ref|XP_001928049.1| PREDICTED: hypothetical protein LOC100154068 [Sus scrofa].
Length = 348
Score = 575 bits (1481), Expect = e-164
Identities = 277/345 (80%), Positives = 316/345 (91%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MP ID D+KLDFKDVLLRPKRS+LKSR+EVDL R+F+FRNSKQ Y+GIPII ANMDTVGT
Sbjct: 1 MPHIDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQMYTGIPIIAANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMA V+ + S+FTA+HKHY+L+ WK FA+ +P+CL+H+A SSG+G +D E++ IL+A+
Sbjct: 61 FEMAKVLCKFSLFTAVHKHYSLEQWKEFASQNPDCLEHLAASSGTGSSDFEQLEQILDAI 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVK+ICLDVANGYSEHFVEFVK VR +FPEHTIMAGNVVTGEMVEELILSGADIIKVG+
Sbjct: 121 PQVKYICLDVANGYSEHFVEFVKDVRKRFPEHTIMAGNVVTGEMVEELILSGADIIKVGI 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTR KTGVGYPQLSAV+ECAD+AHGLKGHIISDGGC+CPGDVAKAFGAGADFVM
Sbjct: 181 GPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVM 240
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGM +GH+E GE+IERNG+K KLFYGMSSE AMKK++GGVAEYRASEGKTVEVP+KG
Sbjct: 241 LGGMLAGHSESGGELIERNGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGA 300
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VE+TI DILGG+RSTCTYVGAAKLKELSRR TFIRVTQQ N +FS
Sbjct: 301 VEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFS 345
>ref|XP_003358476.1| PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like isoform 2
[Sus scrofa].
Length = 489
Score = 123 bits (309), Expect = 2e-28
Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Frame = +1
Query: 394 GKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMV 573
G ++ +K L A V + LD + G S + +K ++ K+P ++ GNVVT
Sbjct: 226 GTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKEKYPSLQVIGGNVVTAAQA 285
Query: 574 EELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCP 753
+ LI +G D ++VG+G GS+C T+ G PQ +AV + ++ A +I+DGG
Sbjct: 286 KNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNV 345
Query: 754 GDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEY 933
G +AKA GA VM+G + + TE GE +G +LK + GM S AM KH Y
Sbjct: 346 GHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRY 405
Query: 934 -------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
+ ++G + V KG + + ++ G++ +C +GA L ++
Sbjct: 406 FSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQV 454
>ref|XP_003132249.2| PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like isoform 1
[Sus scrofa].
Length = 514
Score = 123 bits (309), Expect = 2e-28
Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Frame = +1
Query: 394 GKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMV 573
G ++ +K L A V + LD + G S + +K ++ K+P ++ GNVVT
Sbjct: 251 GTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKEKYPSLQVIGGNVVTAAQA 310
Query: 574 EELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCP 753
+ LI +G D ++VG+G GS+C T+ G PQ +AV + ++ A +I+DGG
Sbjct: 311 KNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNV 370
Query: 754 GDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEY 933
G +AKA GA VM+G + + TE GE +G +LK + GM S AM KH Y
Sbjct: 371 GHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRY 430
Query: 934 -------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
+ ++G + V KG + + ++ G++ +C +GA L ++
Sbjct: 431 FSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQV 479
>ref|XP_003360194.1| PREDICTED: inosine-5'-monophosphate dehydrogenase 1-like [Sus
scrofa].
Length = 584
Score = 121 bits (303), Expect = 1e-27
Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 7/244 (2%)
Frame = +1
Query: 349 NHPECLQHVAVSSGSGKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFP 528
+H + L AV G+ ++D ++ + +A V I LD + G S + + V ++ K+P
Sbjct: 310 SHKQLLCGAAV--GTREDDKYRLDLLTQAGADV--IVLDSSQGNSVYQIAMVHYIKQKYP 365
Query: 529 EHTIMAGNVVTGEMVEELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAH 708
++ GNVVT + LI +G D ++VG+G GS+C T+ G PQ +AV + A+ A
Sbjct: 366 HLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYAR 425
Query: 709 GLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMS 888
+I+DGG G V KA GA VM+G + + TE GE +G +LK + GM
Sbjct: 426 RFGVPVIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMG 485
Query: 889 SETAMKKHSGGVAEY-------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAK 1047
S AM+K S Y + ++G + + KG ++ + ++ G++ C +GA
Sbjct: 486 SLDAMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARS 545
Query: 1048 LKEL 1059
L L
Sbjct: 546 LSVL 549
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,679,674
Number of extensions: 1163420
Number of successful extensions: 5532
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5497
Number of HSP's successfully gapped: 5
Length of query: 493
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 390
Effective length of database: 8,779,541
Effective search space: 3424020990
Effective search space used: 3424020990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007720
(1480 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006868.3| GMP reductase 1 [Homo sapiens]. 673 0.0
Alignment gi|NP_057660.2| GMP reductase 2 isoform 1 [Homo sapiens]. 577 e-164
Alignment gi|NP_001002002.1| GMP reductase 2 isoform 2 [Homo sapiens]. 575 e-164
Alignment gi|NP_001002001.1| GMP reductase 2 isoform 2 [Homo sapiens]. 575 e-164
Alignment gi|NP_001002000.1| GMP reductase 2 isoform 2 [Homo sapiens]. 575 e-164
Alignment gi|NP_000875.2| inosine-5'-monophosphate dehydrogenase 2 [Homo ... 123 5e-28
Alignment gi|NP_001096075.1| inosine-5'-monophosphate dehydrogenase 1 iso... 120 3e-27
Alignment gi|NP_899066.1| inosine-5'-monophosphate dehydrogenase 1 isofor... 120 3e-27
Alignment gi|NP_000874.2| inosine-5'-monophosphate dehydrogenase 1 isofor... 120 3e-27
Alignment gi|NP_001136048.1| inosine-5'-monophosphate dehydrogenase 1 iso... 120 3e-27
>ref|NP_006868.3| GMP reductase 1 [Homo sapiens].
Length = 345
Score = 673 bits (1737), Expect = 0.0
Identities = 334/345 (96%), Positives = 341/345 (98%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT
Sbjct: 1 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMA VMSQHSMFTAIHKHY+LDDWKLFA NHPECLQ+VAVSSGSG+NDLEKM+SILEAV
Sbjct: 61 FEMAAVMSQHSMFTAIHKHYSLDDWKLFATNHPECLQNVAVSSGSGQNDLEKMTSILEAV 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV
Sbjct: 121 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM
Sbjct: 181 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 240
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGMFSGHTECAGEV ERNG+KLKLFYGMSS+TAM KH+GGVAEYRASEGKTVEVPYKGD
Sbjct: 241 LGGMFSGHTECAGEVFERNGRKLKLFYGMSSDTAMNKHAGGVAEYRASEGKTVEVPYKGD 300
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS
Sbjct: 301 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 345
>ref|NP_057660.2| GMP reductase 2 isoform 1 [Homo sapiens].
Length = 366
Score = 577 bits (1486), Expect = e-164
Identities = 278/348 (79%), Positives = 317/348 (91%)
Frame = +1
Query: 70 LGTMPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDT 249
L MP ID D+KLDFKDVLLRPKRS+LKSR+EVDL R+F+FRNSKQTYSG+PII ANMDT
Sbjct: 16 LSAMPHIDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDT 75
Query: 250 VGTFEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSIL 429
VGTFEMA V+ + S+FTA+HKHY+L W+ FA +P+CL+H+A SSG+G +D E++ IL
Sbjct: 76 VGTFEMAKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQIL 135
Query: 430 EAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIK 609
EA+PQVK+ICLDVANGYSEHFVEFVK VR +FP+HTIMAGNVVTGEMVEELILSGADIIK
Sbjct: 136 EAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIK 195
Query: 610 VGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGAD 789
VG+GPGSVCTTR KTGVGYPQLSAV+ECAD+AHGLKGHIISDGGC+CPGDVAKAFGAGAD
Sbjct: 196 VGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGAD 255
Query: 790 FVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPY 969
FVMLGGM +GH+E GE+IER+G+K KLFYGMSSE AMKK++GGVAEYRASEGKTVEVP+
Sbjct: 256 FVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPF 315
Query: 970 KGDVENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
KGDVE+TI DILGG+RSTCTYVGAAKLKELSRR TFIRVTQQ N +FS
Sbjct: 316 KGDVEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFS 363
>ref|NP_001002002.1| GMP reductase 2 isoform 2 [Homo sapiens].
Length = 348
Score = 575 bits (1482), Expect = e-164
Identities = 277/345 (80%), Positives = 316/345 (91%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MP ID D+KLDFKDVLLRPKRS+LKSR+EVDL R+F+FRNSKQTYSG+PII ANMDTVGT
Sbjct: 1 MPHIDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMA V+ + S+FTA+HKHY+L W+ FA +P+CL+H+A SSG+G +D E++ ILEA+
Sbjct: 61 FEMAKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAI 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVK+ICLDVANGYSEHFVEFVK VR +FP+HTIMAGNVVTGEMVEELILSGADIIKVG+
Sbjct: 121 PQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGI 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTR KTGVGYPQLSAV+ECAD+AHGLKGHIISDGGC+CPGDVAKAFGAGADFVM
Sbjct: 181 GPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVM 240
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGM +GH+E GE+IER+G+K KLFYGMSSE AMKK++GGVAEYRASEGKTVEVP+KGD
Sbjct: 241 LGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGD 300
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VE+TI DILGG+RSTCTYVGAAKLKELSRR TFIRVTQQ N +FS
Sbjct: 301 VEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFS 345
>ref|NP_001002001.1| GMP reductase 2 isoform 2 [Homo sapiens].
Length = 348
Score = 575 bits (1482), Expect = e-164
Identities = 277/345 (80%), Positives = 316/345 (91%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MP ID D+KLDFKDVLLRPKRS+LKSR+EVDL R+F+FRNSKQTYSG+PII ANMDTVGT
Sbjct: 1 MPHIDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMA V+ + S+FTA+HKHY+L W+ FA +P+CL+H+A SSG+G +D E++ ILEA+
Sbjct: 61 FEMAKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAI 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVK+ICLDVANGYSEHFVEFVK VR +FP+HTIMAGNVVTGEMVEELILSGADIIKVG+
Sbjct: 121 PQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGI 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTR KTGVGYPQLSAV+ECAD+AHGLKGHIISDGGC+CPGDVAKAFGAGADFVM
Sbjct: 181 GPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVM 240
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGM +GH+E GE+IER+G+K KLFYGMSSE AMKK++GGVAEYRASEGKTVEVP+KGD
Sbjct: 241 LGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGD 300
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VE+TI DILGG+RSTCTYVGAAKLKELSRR TFIRVTQQ N +FS
Sbjct: 301 VEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFS 345
>ref|NP_001002000.1| GMP reductase 2 isoform 2 [Homo sapiens].
Length = 348
Score = 575 bits (1482), Expect = e-164
Identities = 277/345 (80%), Positives = 316/345 (91%)
Frame = +1
Query: 79 MPRIDADLKLDFKDVLLRPKRSSLKSRAEVDLERTFTFRNSKQTYSGIPIIVANMDTVGT 258
MP ID D+KLDFKDVLLRPKRS+LKSR+EVDL R+F+FRNSKQTYSG+PII ANMDTVGT
Sbjct: 1 MPHIDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGT 60
Query: 259 FEMAVVMSQHSMFTAIHKHYTLDDWKLFAANHPECLQHVAVSSGSGKNDLEKMSSILEAV 438
FEMA V+ + S+FTA+HKHY+L W+ FA +P+CL+H+A SSG+G +D E++ ILEA+
Sbjct: 61 FEMAKVLCKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAI 120
Query: 439 PQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMVEELILSGADIIKVGV 618
PQVK+ICLDVANGYSEHFVEFVK VR +FP+HTIMAGNVVTGEMVEELILSGADIIKVG+
Sbjct: 121 PQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGI 180
Query: 619 GPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 798
GPGSVCTTR KTGVGYPQLSAV+ECAD+AHGLKGHIISDGGC+CPGDVAKAFGAGADFVM
Sbjct: 181 GPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVM 240
Query: 799 LGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEYRASEGKTVEVPYKGD 978
LGGM +GH+E GE+IER+G+K KLFYGMSSE AMKK++GGVAEYRASEGKTVEVP+KGD
Sbjct: 241 LGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGD 300
Query: 979 VENTILDILGGLRSTCTYVGAAKLKELSRRATFIRVTQQHNTVFS 1113
VE+TI DILGG+RSTCTYVGAAKLKELSRR TFIRVTQQ N +FS
Sbjct: 301 VEHTIRDILGGIRSTCTYVGAAKLKELSRRTTFIRVTQQVNPIFS 345
>ref|NP_000875.2| inosine-5'-monophosphate dehydrogenase 2 [Homo sapiens].
Length = 514
Score = 123 bits (308), Expect = 5e-28
Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 7/229 (3%)
Frame = +1
Query: 394 GKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGEMV 573
G ++ +K L A V + LD + G S + +K ++ K+P ++ GNVVT
Sbjct: 251 GTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKDKYPNLQVIGGNVVTAAQA 310
Query: 574 EELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCTCP 753
+ LI +G D ++VG+G GS+C T+ G PQ +AV + ++ A +I+DGG
Sbjct: 311 KNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNV 370
Query: 754 GDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVAEY 933
G +AKA GA VM+G + + TE GE +G +LK + GM S AM KH Y
Sbjct: 371 GHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRY 430
Query: 934 -------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
+ ++G + V KG + + ++ G++ +C +GA L ++
Sbjct: 431 FSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQV 479
>ref|NP_001096075.1| inosine-5'-monophosphate dehydrogenase 1 isoform c [Homo sapiens].
Length = 589
Score = 120 bits (301), Expect = 3e-27
Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 7/231 (3%)
Frame = +1
Query: 388 GSGKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGE 567
G+ ++D ++ + +A V I LD + G S + + V ++ K+P ++ GNVVT
Sbjct: 326 GTREDDKYRLDLLTQA--GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAA 383
Query: 568 MVEELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCT 747
+ LI +G D ++VG+G GS+C T+ G PQ +AV + A+ A II+DGG
Sbjct: 384 QAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQ 443
Query: 748 CPGDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVA 927
G V KA GA VM+G + + TE GE +G +LK + GM S AM+K S
Sbjct: 444 TVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQK 503
Query: 928 EY-------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
Y + ++G + + KG ++ + ++ G++ C +GA L L
Sbjct: 504 RYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVL 554
>ref|NP_899066.1| inosine-5'-monophosphate dehydrogenase 1 isoform b [Homo sapiens].
Length = 563
Score = 120 bits (301), Expect = 3e-27
Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 7/231 (3%)
Frame = +1
Query: 388 GSGKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGE 567
G+ ++D ++ + +A V I LD + G S + + V ++ K+P ++ GNVVT
Sbjct: 300 GTREDDKYRLDLLTQA--GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAA 357
Query: 568 MVEELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCT 747
+ LI +G D ++VG+G GS+C T+ G PQ +AV + A+ A II+DGG
Sbjct: 358 QAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQ 417
Query: 748 CPGDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVA 927
G V KA GA VM+G + + TE GE +G +LK + GM S AM+K S
Sbjct: 418 TVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQK 477
Query: 928 EY-------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
Y + ++G + + KG ++ + ++ G++ C +GA L L
Sbjct: 478 RYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVL 528
>ref|NP_000874.2| inosine-5'-monophosphate dehydrogenase 1 isoform a [Homo sapiens].
Length = 599
Score = 120 bits (301), Expect = 3e-27
Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 7/231 (3%)
Frame = +1
Query: 388 GSGKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGE 567
G+ ++D ++ + +A V I LD + G S + + V ++ K+P ++ GNVVT
Sbjct: 336 GTREDDKYRLDLLTQA--GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAA 393
Query: 568 MVEELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCT 747
+ LI +G D ++VG+G GS+C T+ G PQ +AV + A+ A II+DGG
Sbjct: 394 QAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQ 453
Query: 748 CPGDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVA 927
G V KA GA VM+G + + TE GE +G +LK + GM S AM+K S
Sbjct: 454 TVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQK 513
Query: 928 EY-------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
Y + ++G + + KG ++ + ++ G++ C +GA L L
Sbjct: 514 RYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVL 564
>ref|NP_001136048.1| inosine-5'-monophosphate dehydrogenase 1 isoform d [Homo sapiens].
Length = 566
Score = 120 bits (301), Expect = 3e-27
Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 7/231 (3%)
Frame = +1
Query: 388 GSGKNDLEKMSSILEAVPQVKFICLDVANGYSEHFVEFVKLVRAKFPEHTIMAGNVVTGE 567
G+ ++D ++ + +A V I LD + G S + + V ++ K+P ++ GNVVT
Sbjct: 303 GTREDDKYRLDLLTQA--GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAA 360
Query: 568 MVEELILSGADIIKVGVGPGSVCTTRTKTGVGYPQLSAVIECADSAHGLKGHIISDGGCT 747
+ LI +G D ++VG+G GS+C T+ G PQ +AV + A+ A II+DGG
Sbjct: 361 QAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQ 420
Query: 748 CPGDVAKAFGAGADFVMLGGMFSGHTECAGEVIERNGQKLKLFYGMSSETAMKKHSGGVA 927
G V KA GA VM+G + + TE GE +G +LK + GM S AM+K S
Sbjct: 421 TVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQK 480
Query: 928 EY-------RASEGKTVEVPYKGDVENTILDILGGLRSTCTYVGAAKLKEL 1059
Y + ++G + + KG ++ + ++ G++ C +GA L L
Sbjct: 481 RYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVL 531
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,896,491
Number of extensions: 1632320
Number of successful extensions: 8393
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 8316
Number of HSP's successfully gapped: 13
Length of query: 493
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 386
Effective length of database: 14,770,016
Effective search space: 5701226176
Effective search space used: 5701226176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007720
(1480 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 839 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 839 bits (423), Expect = 0.0
Identities = 436/439 (99%), Gaps = 1/439 (0%)
Strand = Plus / Plus
Query: 933 cagagcctccgagggcaagaccgtggaagtaccttacaaaggggacgtggagaacacgat 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12892920 cagagcctccgagggcaagaccgtggaagtaccttacaaaggggacgtggagaacacgat 12892979
Query: 993 tctggatattctcgggggactgaggtctacctgcacctacgtaggggccgccaaactcaa 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12892980 tctggatattctcgggggactgaggtctacctgcacctacgtaggggccgccaaactcaa 12893039
Query: 1053 agagctcagccggagggcgaccttcatccgggtgacccagcagcacaacaccgtgttcag 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12893040 agagctcagccggagggcgaccttcatccgggtgacccagcagcacaacaccgtgttcag 12893099
Query: 1113 ctaacctcgggcacaaggcggcctcgggcgggtgggagcgtccccgtccacgcctgcttt 1172
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12893100 ctaacctcgggcacaaggcggcctcgggcaggtgggagcgtccccgtccacgcctgcttt 12893159
Query: 1173 cccacctccctcctccggtgccggcagaggttcccgctcatcctcatggctgaaggccac 1232
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12893160 cccacctccgtcctccggtgccggcagaggttcccgctcatcctcatggctgaaggccac 12893219
Query: 1233 ccccttcgctcctgtcacctggagcctgcggggctcccctgggtccaggggcccagaagc 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12893220 ccccttcgctcctgtcacctggagcctgcggggctcccctgggtccaggggcccagaagc 12893279
Query: 1293 agggccctcactggatctgcggtcagagctcagctgcccgggatcccaaacctcattgtt 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12893280 agggccctcactggatctgcggtcagagctcagctgcccgggatcccaaacctcattgtt 12893339
Query: 1353 -aaactaacacttggcgcc 1370
||||||||||||||||||
Sbjct: 12893340 aaaactaacacttggcgcc 12893358
Score = 345 bits (174), Expect = 4e-92
Identities = 177/178 (99%)
Strand = Plus / Plus
Query: 367 cagcatgttgccgtgagttccggcagtgggaagaatgatctggaaaagatgagcagcatc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12862984 cagcatgttgccgtgagttccggcagtgggaagaatgatctggaaaagatgagcagcatc 12863043
Query: 427 ctggaagctgtgccgcaggttaagtttatttgcctggatgtggccaatgggtactcggag 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12863044 ctggaagctgtgccgcaggttaagtttatttgcctggatgtggccaatgggtactcggag 12863103
Query: 487 cattttgtggaattcgtgaagcttgtccgtgccaaatttccagaacacaccatcatgg 544
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 12863104 cattttgtggaattcgtgaagcttgtccgtgccaaatttccggaacacaccatcatgg 12863161
Score = 335 bits (169), Expect = 4e-89
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 1 cccacctcccccggcgcccgcgctgcaggaaggagctgcgggctccagcccctctggtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12850720 cccacctcccccggcgcccgcgctgcaggaaggagctgcgggctccagcccctctggtcg 12850779
Query: 61 agcgcgccgctcggcaccatgccccgcatagatgcggacctcaagctggacttcaaggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12850780 agcgcgccgctcggcaccatgccccgcatagatgcggacctcaagctggacttcaaggat 12850839
Query: 121 gtccttctccgacccaagcgaagcagcctcaagagccgagccgaggtgg 169
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12850840 gtccttctccgacccaagcgaagcagcctcaagagccgagccgaggtgg 12850888
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 775 ggagccggagccgattttgtcatgctgggagggatgttttcaggccacacggagtgcgcc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12889491 ggagccggagccgattttgtcatgctgggagggatgttttcaggccacacggagtgcgcc 12889550
Query: 835 ggagaggtgatcgagaggaacgggcagaagctcaagctcttctacgggatgagctcagag 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12889551 ggagaggtgatcgagaggaacgggcagaagctcaagctcttctacgggatgagctcagag 12889610
Query: 895 accgcgatgaagaaacactcaggaggggtcgccgagtacag 935
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 12889611 accgcgatgaagaaacactcaggaggggtcgccgagtacag 12889651
Score = 242 bits (122), Expect = 5e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 164 aggtggatctcgagcgaaccttcacatttcgaaactcgaagcagacctactcagggattc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12857733 aggtggatctcgagcgaaccttcacatttcgaaactcgaagcagacctactcagggattc 12857792
Query: 224 ccatcattgtggccaacatggacaccgtggggacatttgagatggcggtggtgatgtcac 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12857793 ccatcattgtggccaacatggacaccgtggggacatttgagatggcggtggtgatgtcac 12857852
Query: 284 ag 285
||
Sbjct: 12857853 ag 12857854
Score = 214 bits (108), Expect = 1e-52
Identities = 111/112 (99%)
Strand = Plus / Plus
Query: 622 ccaggttccgtgtgtaccacccgcaccaagaccggggtgggctacccccagctgagcgcc 681
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12876704 ccaggttccgtgtgtactacccgcaccaagaccggggtgggctacccccagctgagcgcc 12876763
Query: 682 gtgatcgagtgcgcggactcggcccatggcctgaaggggcacattatctccg 733
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12876764 gtgatcgagtgcgcggactcggcccatggcctgaaggggcacattatctccg 12876815
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 284 agcactccatgtttacagcaattcacaagcattacaccctggatgactggaagctctttg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12860376 agcactccatgtttacagcaattcacaagcattacaccctggatgactggaagctctttg 12860435
Query: 344 ccgctaatcacccagaatgcctgcag 369
||||||||||||||||||||||||||
Sbjct: 12860436 ccgctaatcacccagaatgcctgcag 12860461
Score = 168 bits (85), Expect = 6e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 543 ggcagggaatgtggtgacgggagagatggtggaagagcttattctttctggagcagatat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12872540 ggcagggaatgtggtgacgggagagatggtggaagagcttattctttctggagcagatat 12872599
Query: 603 aatcaaagtgggagtcggaccaggt 627
|||||||||||||||||||||||||
Sbjct: 12872600 aatcaaagtgggagtcggaccaggt 12872624
Score = 87.7 bits (44), Expect = 2e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 733 gacggaggctgtacgtgtccaggagatgtcgccaaagcctttgg 776
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12886598 gacggaggctgtacgtgtccaggagatgtcgccaaagcctttgg 12886641
Score = 73.8 bits (37), Expect = 2e-10
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 543 ggcagggaatgtggtgacgggagagatggtggaagagcttattctttctggagcagatat 602
|||||||||||| || || |||||||||||||||||||| || || ||||| || || ||
Sbjct: 80334419 ggcagggaatgtagtaacaggagagatggtggaagagctgatcctctctggggctgacat 80334360
Query: 603 aatcaaagtgggagtcggaccaggt 627
|||||||||||| | |||||||||
Sbjct: 80334359 catcaaagtgggaattggaccaggt 80334335
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,305,116
Number of extensions: 144
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 10
Length of query: 1480
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1459
Effective length of database: 2,808,413,156
Effective search space: 4097474794604
Effective search space used: 4097474794604
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)