Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007723
(1459 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069177.1| tubulin-specific chaperone C [Bos taurus]. 453 e-127
Alignment gi|NP_001030480.1| protein XRP2 [Bos taurus]. 102 7e-22
Alignment gi|NP_001077199.1| TBCC domain-containing protein 1 [Bos taurus]. 53 8e-07
>ref|NP_001069177.1| tubulin-specific chaperone C [Bos taurus].
Length = 345
Score = 453 bits (1166), Expect = e-127
Identities = 235/347 (67%), Positives = 252/347 (72%)
Frame = +3
Query: 210 MEDSSFSAAAAAVRNGDLGSQWDRSLVPXXXXXXXXXXXXXXXXXXXXXXNEEVEEEKSD 389
ME SAAA A NGDLGSQ +R+LVP ++EVEEEKSD
Sbjct: 1 METGGLSAAALA--NGDLGSQRERTLVPERLQKREHERQLEVERRKQKRQDQEVEEEKSD 58
Query: 390 XXXXXXXRERXXXXXXXXXXXXXXXXXXXAARLQGLQKLINDSVLFLAAYDLRQGQEVXX 569
RER AARLQGLQKLINDSVLFLAAYDLRQ QEV
Sbjct: 59 FFAAAFARERSAVEELLESGESVERLEEAAARLQGLQKLINDSVLFLAAYDLRQAQEVLA 118
Query: 570 XXXXXXXXXXXXXXPKKRFAFKTRRKDVASATKVDXXXXXXXXXXXXXXXXXLKEEGGFD 749
PKKRFAFKTR+KD ASAT+V LKEEG FD
Sbjct: 119 RLQAALAKRRQELQPKKRFAFKTRKKDAASATQVASAPDAPAAEGSLTSPPPLKEEGDFD 178
Query: 750 SSWVCGFSNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGP 929
SSW+CGFSNLQS+VLEKRA+ELHQ+DVLLTQL NCTIKLYGNPNTLRLTKA+GCTLLCGP
Sbjct: 179 SSWICGFSNLQSQVLEKRAEELHQQDVLLTQLRNCTIKLYGNPNTLRLTKAQGCTLLCGP 238
Query: 930 VSTSVFLEDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIVEDCTGIQFAPYTWSYPGI 1109
VSTSVFLEDCSDCVLAVACQQLRVHTTKDTR+FL VTSRAI+EDCTGIQFAPYTWSYPGI
Sbjct: 239 VSTSVFLEDCSDCVLAVACQQLRVHTTKDTRIFLQVTSRAIMEDCTGIQFAPYTWSYPGI 298
Query: 1110 DKDFEGSGLDRSKNNWNDVDDFNWLARDVASPNWSILPEEERRIQWD 1250
DKDFEGSGLD++KNNWNDVDDFNWLARDVASPNW++LPEEERRIQWD
Sbjct: 299 DKDFEGSGLDKNKNNWNDVDDFNWLARDVASPNWNVLPEEERRIQWD 345
>ref|NP_001030480.1| protein XRP2 [Bos taurus].
Length = 310
Score = 102 bits (255), Expect = 7e-22
Identities = 49/154 (31%), Positives = 80/154 (51%)
Frame = +3
Query: 768 FSNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVF 947
FS L+ + + ++ + L+ NC I ++ + T+ + C + GPV SVF
Sbjct: 2 FSGLKDVTVGRLPGKVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCVIFLGPVKGSVF 61
Query: 948 LEDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIVEDCTGIQFAPYTWSYPGIDKDFEG 1127
+C DC A+ACQQ RV + VFL ++ I+E T I+F+ + W YP + F+
Sbjct: 62 FRNCRDCKCALACQQFRVRDCRKLEVFLCCATQPIIESSTNIKFSCFQWYYPELAFQFKD 121
Query: 1128 SGLDRSKNNWNDVDDFNWLARDVASPNWSILPEE 1229
+GL N W+ + DF ++ NWS+LPE+
Sbjct: 122 AGLSIFNNTWSSIHDFTPVS---GEHNWSLLPED 152
>ref|NP_001077199.1| TBCC domain-containing protein 1 [Bos taurus].
Length = 557
Score = 52.8 bits (125), Expect = 8e-07
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 2/153 (1%)
Frame = +3
Query: 771 SNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVFL 950
S + + L K +D L V + + + I L ++ + K R T + GPV T++ L
Sbjct: 313 SQVYKQTLAKSSDTLVGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSTFVLGPVQTALHL 372
Query: 951 EDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIV-EDCTGIQFAPYTWSYPGIDKDFEG 1127
C + + C +L + +T +L +R ++ + FAP+ YP ++
Sbjct: 373 HSCDNVKVIAVCHRLSISSTTGCIFHILTPTRPLILSGNQRVTFAPFHTHYPMLEDHMAR 432
Query: 1128 SGLDRSKNNWNDVDDFNWLARDVASPN-WSILP 1223
+GL N W D+ + R+ +SP+ + +LP
Sbjct: 433 TGLATVPNYW---DNPMIVCRENSSPSVFRLLP 462
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,833,417
Number of extensions: 1197473
Number of successful extensions: 4850
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4831
Number of HSP's successfully gapped: 3
Length of query: 486
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 380
Effective length of database: 14,174,046
Effective search space: 5386137480
Effective search space used: 5386137480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007723
(1459 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538923.2| PREDICTED: similar to beta-tubulin cofactor C [... 437 e-123
Alignment gi|XP_548972.2| PREDICTED: similar to XRP2 protein [Canis famil... 103 4e-22
Alignment gi|XP_545241.2| PREDICTED: hypothetical protein XP_545241 [Cani... 53 8e-07
>ref|XP_538923.2| PREDICTED: similar to beta-tubulin cofactor C [Canis familiaris].
Length = 388
Score = 437 bits (1125), Expect = e-123
Identities = 238/391 (60%), Positives = 256/391 (65%), Gaps = 1/391 (0%)
Frame = +3
Query: 81 MGKENKAGV*RQHVRPITXXXXXXXXXXXXXXXXXXXXXXEVKMEDSSFSAAAAAVRNGD 260
MGKENKAG E KME +S SAAAA NG
Sbjct: 1 MGKENKAGADVSVSGQSQRALVGGLTEGAPGGSKAAAGKLEAKMEAASCSAAAA---NGA 57
Query: 261 LGSQWDRSLVPXXXXXXXXXXXXXXXXXXXXXXNEEVEEEKSDXXXXXXXRERXXXXXXX 440
+GSQ DRSLVP N+EVEEEKSD RER
Sbjct: 58 VGSQRDRSLVPERLQRREQERQLEVERRKQKRQNQEVEEEKSDFFAAAFARERAAVEELL 117
Query: 441 XXXXXXXXXXXXAARLQGLQKLINDSVLFLAAYDLRQGQEVXXXXXXXXXXXXXXXXPKK 620
AARLQGLQKL+ND+VLFLAAYDLRQGQE PKK
Sbjct: 118 ESGESMEQLDEAAARLQGLQKLVNDAVLFLAAYDLRQGQEALTRLQATLAERRQELQPKK 177
Query: 621 RFAFKTRRKDVASATKVDXXXXXXXXXXXXXXXXXLKEEGG-FDSSWVCGFSNLQSEVLE 797
RFAFKTRRKD SAT VD LKEEGG S +V GFSN++S+VLE
Sbjct: 178 RFAFKTRRKDAVSATTVDAAPGPAAAEGILAFPPPLKEEGGGIGSGFVFGFSNVESQVLE 237
Query: 798 KRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVFLEDCSDCVLA 977
KRA+ELHQRDVLLT+LS CT++LYGNPNTLRL KARGCTLLCGPVSTSVFLEDCSDCVLA
Sbjct: 238 KRAEELHQRDVLLTELSKCTVRLYGNPNTLRLAKARGCTLLCGPVSTSVFLEDCSDCVLA 297
Query: 978 VACQQLRVHTTKDTRVFLLVTSRAIVEDCTGIQFAPYTWSYPGIDKDFEGSGLDRSKNNW 1157
VACQQLRVHTT+DTR+FL VTSRAIVEDC+GIQFAPYTWSYPGIDKDFEGSGLDRSKNNW
Sbjct: 298 VACQQLRVHTTRDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPGIDKDFEGSGLDRSKNNW 357
Query: 1158 NDVDDFNWLARDVASPNWSILPEEERRIQWD 1250
ND+DDFNWLARD ASPNWSILPEEER +QWD
Sbjct: 358 NDIDDFNWLARDTASPNWSILPEEERTVQWD 388
>ref|XP_548972.2| PREDICTED: similar to XRP2 protein [Canis familiaris].
Length = 350
Score = 103 bits (257), Expect = 4e-22
Identities = 48/154 (31%), Positives = 81/154 (52%)
Frame = +3
Query: 768 FSNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVF 947
FS L+ E + + ++ + L+ NC I ++ + T+ + C + GPV SVF
Sbjct: 42 FSGLKDETVGRLPGQVAGQQFLIQDCENCNIYIFDHSATITIDDCTNCVIFLGPVKGSVF 101
Query: 948 LEDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIVEDCTGIQFAPYTWSYPGIDKDFEG 1127
+C DC +ACQQ RV + VFL ++ I+E T I+F + W YP + F+
Sbjct: 102 FRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSTNIKFGCFQWYYPELAFQFKD 161
Query: 1128 SGLDRSKNNWNDVDDFNWLARDVASPNWSILPEE 1229
+ L N W+++ DF ++ ++ NWS+LPE+
Sbjct: 162 AALSIFNNTWSNIHDFTPVSGEL---NWSLLPED 192
>ref|XP_545241.2| PREDICTED: hypothetical protein XP_545241 [Canis familiaris].
Length = 557
Score = 52.8 bits (125), Expect = 8e-07
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Frame = +3
Query: 771 SNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVFL 950
S + + L K +D L V + + + I L ++ + K R T + GPV T++ L
Sbjct: 313 SQVYKQTLAKSSDTLVGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSTFVLGPVQTALHL 372
Query: 951 EDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIV-EDCTGIQFAPYTWSYPGIDKDFEG 1127
C + + C +L V +T +L +R ++ + FAP+ YP ++
Sbjct: 373 HSCDNIKVIAVCHRLSVSSTAGCIFHILTPTRPLILSGNQTVTFAPFHTHYPMLEDHMAR 432
Query: 1128 SGLDRSKNNWND 1163
+GL N W++
Sbjct: 433 TGLATVPNYWDN 444
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,731,921
Number of extensions: 1219202
Number of successful extensions: 5385
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5356
Number of HSP's successfully gapped: 4
Length of query: 486
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 379
Effective length of database: 15,307,552
Effective search space: 5801562208
Effective search space used: 5801562208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007723
(1459 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848472.2| tubulin-specific chaperone C [Mus musculus]. 384 e-107
Alignment gi|NP_598430.1| protein XRP2 [Mus musculus]. 102 6e-22
Alignment gi|NP_001074837.1| TBCC domain-containing protein 1 [Mus muscul... 55 1e-07
>ref|NP_848472.2| tubulin-specific chaperone C [Mus musculus].
Length = 341
Score = 384 bits (987), Expect = e-107
Identities = 206/345 (59%), Positives = 227/345 (65%)
Frame = +3
Query: 216 DSSFSAAAAAVRNGDLGSQWDRSLVPXXXXXXXXXXXXXXXXXXXXXXNEEVEEEKSDXX 395
D S + A AA GS D SLVP ++EVEEEKS
Sbjct: 5 DCSMALADAAA-----GSPRDLSLVPERLQRREQERQIEVERRKQKRQDQEVEEEKSGFF 59
Query: 396 XXXXXRERXXXXXXXXXXXXXXXXXXXAARLQGLQKLINDSVLFLAAYDLRQGQEVXXXX 575
RER A RLQGL+KL+NDSVLFLAAYDLRQGQ
Sbjct: 60 AAAFARERAAVEELLRGEASAERLEEAANRLQGLRKLLNDSVLFLAAYDLRQGQAALAQL 119
Query: 576 XXXXXXXXXXXXPKKRFAFKTRRKDVASATKVDXXXXXXXXXXXXXXXXXLKEEGGFDSS 755
PKKRFAFK R+KD A +VD +EEG +S
Sbjct: 120 QAVLTERRQELQPKKRFAFKARKKDAAGTAQVDAAPVASAAPSPPVTK---EEEGAPGAS 176
Query: 756 WVCGFSNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVS 935
W CGFSNL+S+ LEKRA+ELHQRDVLL+ L+NCT+KL GNPNTLRL KARGC +LCGPV+
Sbjct: 177 WACGFSNLESQDLEKRAEELHQRDVLLSDLTNCTVKLCGNPNTLRLAKARGCKVLCGPVT 236
Query: 936 TSVFLEDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIVEDCTGIQFAPYTWSYPGIDK 1115
TSVFLEDC DCVLAVACQQLRVHTTKDTRVFL VTSRAIVEDC+GIQFAPYTWSYPGIDK
Sbjct: 237 TSVFLEDCRDCVLAVACQQLRVHTTKDTRVFLQVTSRAIVEDCSGIQFAPYTWSYPGIDK 296
Query: 1116 DFEGSGLDRSKNNWNDVDDFNWLARDVASPNWSILPEEERRIQWD 1250
DF+ SGLDRSKNNW+ VDDFNWLAR+VASPNWSILPEEER IQWD
Sbjct: 297 DFQDSGLDRSKNNWDQVDDFNWLARNVASPNWSILPEEERDIQWD 341
>ref|NP_598430.1| protein XRP2 [Mus musculus].
Length = 347
Score = 102 bits (255), Expect = 6e-22
Identities = 49/153 (32%), Positives = 80/153 (52%)
Frame = +3
Query: 768 FSNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVF 947
FS L+ E + + ++ + ++ NC I ++ + T+ + C + GPV SVF
Sbjct: 39 FSGLKDETVGRLPGKVAGQQFVIQDCENCNIYIFDHSATITIDDCTNCVIFLGPVKGSVF 98
Query: 948 LEDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIVEDCTGIQFAPYTWSYPGIDKDFEG 1127
+C DC +ACQQ RV + VFL ++ I+E T I+F + W YP + F+
Sbjct: 99 FRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSTNIKFGCFQWYYPELAAQFKD 158
Query: 1128 SGLDRSKNNWNDVDDFNWLARDVASPNWSILPE 1226
+GL N W+ V DF ++ ++ NWS+LPE
Sbjct: 159 AGLSIFNNIWSHVHDFTPVSGEL---NWSLLPE 188
>ref|NP_001074837.1| TBCC domain-containing protein 1 [Mus musculus].
Length = 552
Score = 55.1 bits (131), Expect = 1e-07
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Frame = +3
Query: 771 SNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVFL 950
S + + L K ++ L V + S I L ++ + K R T + GPV T++ L
Sbjct: 313 SQVYKQTLAKSSETLVGAHVRAHRCSESFIYLLSPLRSMTIEKCRNSTFVLGPVETTLHL 372
Query: 951 EDCSDCVLAVACQQLRVHTTKDTRVFLLVTSR-AIVEDCTGIQFAPYTWSYPGIDKDFEG 1127
DC + + C +L + +T ++ SR I+ + FAP+ YP ++
Sbjct: 373 HDCENLKVIAVCHRLSISSTTSCTFHIMTPSRPLILSGNQTVTFAPFHTHYPMLEDHMAR 432
Query: 1128 SGLDRSKNNWND 1163
+GL N W++
Sbjct: 433 TGLATVPNYWDN 444
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,595,407
Number of extensions: 993898
Number of successful extensions: 3986
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3966
Number of HSP's successfully gapped: 3
Length of query: 486
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 381
Effective length of database: 12,463,779
Effective search space: 4748699799
Effective search space used: 4748699799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007723
(1459 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360330.1| PREDICTED: protein XRP2 [Sus scrofa]. 105 5e-23
Alignment gi|NP_001230398.1| TBCC domain-containing protein 1 [Sus scrofa]. 55 1e-07
>ref|XP_003360330.1| PREDICTED: protein XRP2 [Sus scrofa].
Length = 350
Score = 105 bits (263), Expect = 5e-23
Identities = 50/154 (32%), Positives = 83/154 (53%)
Frame = +3
Query: 768 FSNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVF 947
FS L+ E + + ++ + L+ NC I ++ + T+ + C + GPV SVF
Sbjct: 42 FSGLKDETVGRLPGKVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCVIFLGPVKGSVF 101
Query: 948 LEDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIVEDCTGIQFAPYTWSYPGIDKDFEG 1127
+C DC A+ACQQ RV + VFL ++ I+E T I+F + W YP + F+
Sbjct: 102 FRNCRDCKCALACQQFRVRDCRKLEVFLCCATQPIIESSTHIKFGCFQWYYPELAFQFKD 161
Query: 1128 SGLDRSKNNWNDVDDFNWLARDVASPNWSILPEE 1229
+GL N W+++ DF ++ ++ NWS+LPE+
Sbjct: 162 AGLSIFNNTWSNIHDFTPVSGEL---NWSLLPED 192
>ref|NP_001230398.1| TBCC domain-containing protein 1 [Sus scrofa].
Length = 557
Score = 54.7 bits (130), Expect = 1e-07
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Frame = +3
Query: 771 SNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVFL 950
S + + L K +D L V + + + I L ++ + K R T + GPV T++ L
Sbjct: 313 SQVYKQTLAKSSDTLVGAHVKIHRCNESFIYLLSPLRSVTVEKCRNSTFVLGPVQTALHL 372
Query: 951 EDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIV-EDCTGIQFAPYTWSYPGIDKDFEG 1127
C + + C +L + +T D +L +R ++ + FAP+ YP ++
Sbjct: 373 HSCDNVKVIAVCHRLSISSTTDCIFHILTPTRPLILSGNQRVTFAPFHTHYPMLEDHMAR 432
Query: 1128 SGLDRSKNNWND 1163
+GL N W++
Sbjct: 433 TGLAAVPNYWDN 444
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,118,375
Number of extensions: 799915
Number of successful extensions: 3176
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3170
Number of HSP's successfully gapped: 2
Length of query: 486
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 383
Effective length of database: 8,779,541
Effective search space: 3362564203
Effective search space used: 3362564203
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007723
(1459 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003183.1| tubulin-specific chaperone C [Homo sapiens]. 420 e-117
Alignment gi|NP_008846.2| protein XRP2 [Homo sapiens]. 102 9e-22
Alignment gi|NP_001127887.1| TBCC domain-containing protein 1 [Homo sapie... 50 5e-06
Alignment gi|NP_060608.1| TBCC domain-containing protein 1 [Homo sapiens]. 50 5e-06
>ref|NP_003183.1| tubulin-specific chaperone C [Homo sapiens].
Length = 346
Score = 420 bits (1079), Expect = e-117
Identities = 220/344 (63%), Positives = 237/344 (68%), Gaps = 1/344 (0%)
Frame = +3
Query: 222 SFSAAAAAVRNGDLGSQWDRSLVPXXXXXXXXXXXXXXXXXXXXXXNEEVEEEKSDXXXX 401
S S +AAAVR GD+ SQ D SLVP N+EVE+E S
Sbjct: 3 SVSCSAAAVRTGDMESQRDLSLVPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVA 62
Query: 402 XXXRERXXXXXXXXXXXXXXXXXXXAARLQGLQKLINDSVLFLAAYDLRQGQEVXXXXXX 581
RER A+RLQGLQKLINDSV FLAAYDLRQGQE
Sbjct: 63 TFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQA 122
Query: 582 XXXXXXXXXXPKKRFAFKTRRKDVASATKVDXXXXXXXXXXXXXXXXXLKE-EGGFDSSW 758
PKKRFAFKTR KD AS+TKVD K+ EG SW
Sbjct: 123 ALAERRRGLQPKKRFAFKTRGKDAASSTKVDAAPGIPPAVESIQDSPLPKKAEGDLGPSW 182
Query: 759 VCGFSNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVST 938
VCGFSNL+S+VLEKRA ELHQRDVLLT+LSNCT++LYGNPNTLRLTKA C LLCGPVST
Sbjct: 183 VCGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVST 242
Query: 939 SVFLEDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIVEDCTGIQFAPYTWSYPGIDKD 1118
SVFLEDCSDCVLAVACQQLR+H+TKDTR+FL VTSRAIVEDC+GIQFAPYTWSYP IDKD
Sbjct: 243 SVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKD 302
Query: 1119 FEGSGLDRSKNNWNDVDDFNWLARDVASPNWSILPEEERRIQWD 1250
FE SGLDRSKNNWNDVDDFNWLARD+ASPNWSILPEEER IQWD
Sbjct: 303 FESSGLDRSKNNWNDVDDFNWLARDMASPNWSILPEEERNIQWD 346
>ref|NP_008846.2| protein XRP2 [Homo sapiens].
Length = 350
Score = 102 bits (254), Expect = 9e-22
Identities = 48/154 (31%), Positives = 81/154 (52%)
Frame = +3
Query: 768 FSNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVF 947
FS L+ E + + + + L+ NC I ++ + T+ + C + GPV SVF
Sbjct: 42 FSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVF 101
Query: 948 LEDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIVEDCTGIQFAPYTWSYPGIDKDFEG 1127
+C DC +ACQQ RV + VFL ++ I+E + I+F + W YP + F+
Sbjct: 102 FRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKD 161
Query: 1128 SGLDRSKNNWNDVDDFNWLARDVASPNWSILPEE 1229
+GL N W+++ DF ++ ++ NWS+LPE+
Sbjct: 162 AGLSIFNNTWSNIHDFTPVSGEL---NWSLLPED 192
>ref|NP_001127887.1| TBCC domain-containing protein 1 [Homo sapiens].
Length = 557
Score = 50.1 bits (118), Expect = 5e-06
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Frame = +3
Query: 771 SNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVFL 950
S + + L K +D L V + + + I L ++ + K R + GPV T++ L
Sbjct: 313 SQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSIFVLGPVGTTLHL 372
Query: 951 EDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIV-EDCTGIQFAPYTWSYPGIDKDFEG 1127
C + + C +L + +T +L +R ++ + FAP+ YP ++
Sbjct: 373 HSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFHTHYPMLEDHMAR 432
Query: 1128 SGLDRSKNNWND 1163
+GL N W++
Sbjct: 433 TGLATVPNYWDN 444
>ref|NP_060608.1| TBCC domain-containing protein 1 [Homo sapiens].
Length = 557
Score = 50.1 bits (118), Expect = 5e-06
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Frame = +3
Query: 771 SNLQSEVLEKRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVFL 950
S + + L K +D L V + + + I L ++ + K R + GPV T++ L
Sbjct: 313 SQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSIFVLGPVGTTLHL 372
Query: 951 EDCSDCVLAVACQQLRVHTTKDTRVFLLVTSRAIV-EDCTGIQFAPYTWSYPGIDKDFEG 1127
C + + C +L + +T +L +R ++ + FAP+ YP ++
Sbjct: 373 HSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFHTHYPMLEDHMAR 432
Query: 1128 SGLDRSKNNWND 1163
+GL N W++
Sbjct: 433 TGLATVPNYWDN 444
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,751,529
Number of extensions: 1195441
Number of successful extensions: 4686
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4664
Number of HSP's successfully gapped: 4
Length of query: 486
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 380
Effective length of database: 14,802,980
Effective search space: 5625132400
Effective search space used: 5625132400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007723
(1459 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 2676 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 2676 bits (1350), Expect = 0.0
Identities = 1365/1370 (99%)
Strand = Plus / Minus
Query: 63 tccaacgccaagaagccaatgggcaaagaaaataaggccggggtctgacgtcagcatgtc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249930 tccaacgccaagaagccaatgggcaaagaaaataaggccggggtctgacgtcagcatgtc 43249871
Query: 123 cgaccaatcacaaggcgcgttggtgggaggcttcgcgaagggcgcgcccggagaaggaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249870 cgaccaatcacaaggcgcgttggtgggaggcttcgcgaagggcgcgcccggagaaggaag 43249811
Query: 183 gcaggagaaaggaagcttgaagtcaagatggaggatagtagtttctctgcggctgctgct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249810 gcaggagaaaggaagcttgaagtcaagatggaggatagtagtttctctgcggctgctgct 43249751
Query: 243 gctgtgcggaacggggacttggggtcccagtgggaccggagcttggtgcccgagcggctt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249750 gctgtgcggaacggggacttggggtcccagtgggaccggagcttggtgcccgagcggctt 43249691
Query: 303 cagaggcgagaacaagagcggcaactggaggtggaaaggcggaagcaaaagcggcagaac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249690 cagaggcgagaacaagagcggcaactggaggtggaaaggcggaagcaaaagcggcagaac 43249631
Query: 363 gaggaggtggaggaggaaaagagcgactttttcgccgccgccttcgctcgggagcgatcg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249630 gaggaggtggaggaggaaaagagcgactttttcgccgccgccttcgctcgggagcgatcg 43249571
Query: 423 gccgtggaagagcttctggaaggcggggagtccgtcgagaagctggaggaggcggccgct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249570 gccgtggaagagcttctggaaggcggggagtccgtcgagaagctggaggaggcggccgct 43249511
Query: 483 cggctacaggggctgcagaaacttatcaacgattcggttttgttcctggccgcctacgat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249510 cggctacaggggctgcagaaacttatcaacgattcggttttgttcctggccgcctacgat 43249451
Query: 543 ctgcggcagggacaagaggtgctggcgcggctgcaggcggccctggccaagcggcgtcag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249450 ctgcggcagggacaagaggtgctggcgcggctgcaggcggccctggccaagcggcgtcag 43249391
Query: 603 gagctgcagcctaagaagcgtttcgctttcaagactcgcaggaaggatgtcgcttcagcc 662
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 43249390 gagctgcagcctaagaagcgtttcgctttcaagactcgcaggaaggatatcgcttcagcc 43249331
Query: 663 accaaagtagactcggctcccggcgccccggctgctgacgccatcctggcctcctctccg 722
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 43249330 accaaagtagactcggctcccggcgccccggctgctgacggcatcctggcctcctctccg 43249271
Query: 723 cccttgaaggaggagggaggcttcgactccagctgggtctgcggcttctccaacctgcag 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249270 cccttgaaggaggagggaggcttcgactccagctgggtctgcggcttctccaacctgcag 43249211
Query: 783 tccgaagtcttggagaagagagccgacgagctgcaccagcgcgacgtccttttgacccaa 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249210 tccgaagtcttggagaagagagccgacgagctgcaccagcgcgacgtccttttgacccaa 43249151
Query: 843 ctgagtaattgcacgatcaaattgtatggcaatcccaatactctgcggctaaccaaggcc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249150 ctgagtaattgcacgatcaaattgtatggcaatcccaatactctgcggctaaccaaggcc 43249091
Query: 903 cgaggctgcacgctgctctgcggtcccgtgtccacctctgtgttcctggaggactgcagt 962
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 43249090 cgaggctgcacgctgctctgcggccccgtgtccacctctgtgttcctggaggactgcagt 43249031
Query: 963 gactgcgtgctggctgtggcctgccagcagctccgcgtacacaccacaaaagacacccgc 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43249030 gactgcgtgctggctgtggcctgccagcagctccgcgtacacaccacaaaagacacccgc 43248971
Query: 1023 gtcttcctgctggtgaccagcagggccatcgtggaggactgcacggggatccagttcgcc 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43248970 gtcttcctgctggtgaccagcagggccatcgtggaggactgcacggggatccagttcgcc 43248911
Query: 1083 ccctacacctggagctacccggggatcgacaaggactttgagggctctggtttagatagg 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43248910 ccctacacctggagctacccggggatcgacaaggactttgagggctctggtttagatagg 43248851
Query: 1143 agcaaaaataactggaacgacgttgacgatttcaactggctggcccgggatgtggcctcc 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43248850 agcaaaaataactggaacgacgttgacgatttcaactggctggcccgggatgtggcctcc 43248791
Query: 1203 ccaaactggagcattcttccggaagaagagcgaaggatccagtgggactaaagcagttgt 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43248790 ccaaactggagcattcttccggaagaagagcgaaggatccagtgggactaaagcagttgt 43248731
Query: 1263 cacgcttttcttcactcctactccttcccatgtgggactgattccggctaatgggactgc 1322
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 43248730 cacgcttttcttcactcctactccttcccatgtgggactgactccggctaatgggactgc 43248671
Query: 1323 aaagtgtatctattgttttcacgccgtatatgttttcattattttaagacgagattgtga 1382
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43248670 aaagtgtacctattgttttcacgccgtatatgttttcattattttaagacgagattgtga 43248611
Query: 1383 taagctgctacatttgatctacattaaatttgtgacaggtctggcacttt 1432
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43248610 taagctgctacatttgatctacattaaatttgtgacaggtctggcacttt 43248561
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,407,062
Number of extensions: 259
Number of successful extensions: 259
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 1
Length of query: 1459
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1438
Effective length of database: 2,808,413,156
Effective search space: 4038498118328
Effective search space used: 4038498118328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)