Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007724
(969 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029632.1| AN1-type zinc finger protein 6 [Bos taurus]. 348 3e-96
Alignment gi|NP_001094515.1| AN1-type zinc finger protein 5 [Bos taurus]. 204 1e-52
Alignment gi|XP_002696647.1| PREDICTED: zinc finger, AN1-type domain 6-li... 107 1e-23
Alignment gi|NP_001095615.1| AN1-type zinc finger protein 3 [Bos taurus]. 57 2e-08
>ref|NP_001029632.1| AN1-type zinc finger protein 6 [Bos taurus].
Length = 208
Score = 348 bits (894), Expect = 3e-96
Identities = 174/208 (83%), Positives = 175/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAPSVTSLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSVPEA V NQSLLSESVASSQVDSTSVDKAIPETEDL
Sbjct: 61 SLPVQCTDGSVPEAQSALDSTASSVQPSPVSNQSLLSESVASSQVDSTSVDKAIPETEDL 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVS+TAQQ SEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSETAQQASEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001094515.1| AN1-type zinc finger protein 5 [Bos taurus].
Length = 213
Score = 204 bits (518), Expect = 1e-52
Identities = 108/213 (50%), Positives = 129/213 (60%), Gaps = 5/213 (2%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSN--GRIXXXXXXXXXX 333
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S +
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 334 XXXXXXQCTDGSVPE---AXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIP 504
Q D S+ A +P ++E S + T+ +
Sbjct: 61 SDSASVQRADASLNNCEGAAGSTSEKSRNMPVAALPVTQQMTEMSISREDKVTTPKTEVS 120
Query: 505 ETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRY 684
E Q S S + S+ + K+ E PK KKNRCFMCRKKVGLTGF+CRCGN++CG+HRY
Sbjct: 121 EPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180
Query: 685 SDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 783
SD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ref|XP_002696647.1| PREDICTED: zinc finger, AN1-type domain 6-like [Bos taurus].
Length = 62
Score = 107 bits (268), Expect = 1e-23
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +1
Query: 640 FECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 783
FECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 15 FECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 62
>ref|NP_001095615.1| AN1-type zinc finger protein 3 [Bos taurus].
Length = 227
Score = 57.4 bits (137), Expect = 2e-08
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 16/191 (8%)
Frame = +1
Query: 211 CGFYGNPRTNGMCSVCYKEHLQRQ----------NSSNGRIXXXXXXXXXXXXXXXXQCT 360
CGF+G+ +T +CS C+ + ++Q NS + +
Sbjct: 20 CGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNSQSDLFSEETTSDNKNTSLTTPTLS 79
Query: 361 DGSVP---EAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDLQASV 531
P E + SL++ + S DS S ++A P
Sbjct: 80 PSQQPLPTELNVTAPSKEECGPCTDTAHVSLITPTKRSCGTDSQSENEASPVKRPRLLEN 139
Query: 532 SDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFE---CRCGNVYCGVHRYSDVHNC 702
++ +++ S + KS + RCF C+ K+ L E CRCG V+C +HR + H+C
Sbjct: 140 TERSEEASRSKQKS-------RRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDC 192
Query: 703 SYNYKADAAEK 735
++++ E+
Sbjct: 193 TFDHMGRGREE 203
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,836,055
Number of extensions: 673094
Number of successful extensions: 2198
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2191
Number of HSP's successfully gapped: 5
Length of query: 323
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 221
Effective length of database: 14,306,398
Effective search space: 3161713958
Effective search space used: 3161713958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007724
(969 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861229.1| PREDICTED: similar to zinc finger, A20 domain c... 348 3e-96
Alignment gi|XP_861200.1| PREDICTED: similar to zinc finger, A20 domain c... 348 3e-96
Alignment gi|XP_861168.1| PREDICTED: similar to zinc finger, A20 domain c... 348 3e-96
Alignment gi|XP_861141.1| PREDICTED: similar to zinc finger, A20 domain c... 348 3e-96
Alignment gi|XP_536211.1| PREDICTED: similar to zinc finger, A20 domain c... 348 3e-96
Alignment gi|XP_861002.1| PREDICTED: similar to zinc finger, A20 domain c... 344 6e-95
Alignment gi|XP_860941.1| PREDICTED: similar to zinc finger, A20 domain c... 344 6e-95
Alignment gi|XP_861084.1| PREDICTED: similar to zinc finger, A20 domain c... 344 8e-95
Alignment gi|XP_861056.1| PREDICTED: similar to zinc finger, A20 domain c... 338 6e-93
Alignment gi|XP_850286.1| PREDICTED: similar to protein associated with P... 337 1e-92
>ref|XP_861229.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform
11 [Canis familiaris].
Length = 208
Score = 348 bits (894), Expect = 3e-96
Identities = 173/208 (83%), Positives = 175/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSTLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSV +A V NQSLLSESVASSQVDSTSVDKA+PETEDL
Sbjct: 61 SLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSLLSESVASSQVDSTSVDKAVPETEDL 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|XP_861200.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform
10 [Canis familiaris].
Length = 208
Score = 348 bits (894), Expect = 3e-96
Identities = 173/208 (83%), Positives = 175/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSTLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSV +A V NQSLLSESVASSQVDSTSVDKA+PETEDL
Sbjct: 61 SLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSLLSESVASSQVDSTSVDKAVPETEDL 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|XP_861168.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform
9 [Canis familiaris].
Length = 208
Score = 348 bits (894), Expect = 3e-96
Identities = 173/208 (83%), Positives = 175/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSTLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSV +A V NQSLLSESVASSQVDSTSVDKA+PETEDL
Sbjct: 61 SLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSLLSESVASSQVDSTSVDKAVPETEDL 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|XP_861141.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform
8 [Canis familiaris].
Length = 208
Score = 348 bits (894), Expect = 3e-96
Identities = 173/208 (83%), Positives = 175/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSTLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSV +A V NQSLLSESVASSQVDSTSVDKA+PETEDL
Sbjct: 61 SLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSLLSESVASSQVDSTSVDKAVPETEDL 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|XP_536211.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform
1 [Canis familiaris].
Length = 208
Score = 348 bits (894), Expect = 3e-96
Identities = 173/208 (83%), Positives = 175/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSTLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSV +A V NQSLLSESVASSQVDSTSVDKA+PETEDL
Sbjct: 61 SLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSLLSESVASSQVDSTSVDKAVPETEDL 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|XP_861002.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform
5 [Canis familiaris].
Length = 207
Score = 344 bits (883), Expect = 6e-95
Identities = 173/208 (83%), Positives = 175/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPASVSTLSES 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSV +A V NQSLLSESVASSQVDSTSVDKA+PETEDL
Sbjct: 61 LPV-QCTDGSVADAQLPLDSTSASVQPSPVSNQSLLSESVASSQVDSTSVDKAVPETEDL 119
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 120 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 179
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 180 CSYNYKADAAEKIRKENPVVVGEKIQKI 207
>ref|XP_860941.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform
3 [Canis familiaris].
Length = 207
Score = 344 bits (883), Expect = 6e-95
Identities = 173/208 (83%), Positives = 175/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPASVSTLSES 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSV +A V NQSLLSESVASSQVDSTSVDKA+PETEDL
Sbjct: 61 LPV-QCTDGSVADAQLPLDSTSASVQPSPVSNQSLLSESVASSQVDSTSVDKAVPETEDL 119
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 120 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 179
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 180 CSYNYKADAAEKIRKENPVVVGEKIQKI 207
>ref|XP_861084.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform
7 [Canis familiaris].
Length = 209
Score = 344 bits (882), Expect = 8e-95
Identities = 173/209 (82%), Positives = 175/209 (83%), Gaps = 1/209 (0%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPVSASVSTLS 60
Query: 340 XXXX-QCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETED 516
QCTDGSV +A V NQSLLSESVASSQVDSTSVDKA+PETED
Sbjct: 61 ESLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSLLSESVASSQVDSTSVDKAVPETED 120
Query: 517 LQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVH 696
LQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVH
Sbjct: 121 LQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVH 180
Query: 697 NCSYNYKADAAEKIRKENPVVVGEKIQKI 783
NCSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 NCSYNYKADAAEKIRKENPVVVGEKIQKI 209
>ref|XP_861056.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform
6 [Canis familiaris].
Length = 199
Score = 338 bits (866), Expect = 6e-93
Identities = 170/208 (81%), Positives = 172/208 (82%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSTLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSV +A SLLSESVASSQVDSTSVDKA+PETEDL
Sbjct: 61 SLPVQCTDGSVADAQLPLDSTSA---------SSLLSESVASSQVDSTSVDKAVPETEDL 111
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 112 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 171
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 172 CSYNYKADAAEKIRKENPVVVGEKIQKI 199
>ref|XP_850286.1| PREDICTED: similar to protein associated with PRK1 isoform 2 [Canis
familiaris].
Length = 223
Score = 337 bits (864), Expect = 1e-92
Identities = 172/223 (77%), Positives = 174/223 (78%), Gaps = 15/223 (6%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSTLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSV +A V NQSLLSESVASSQVDSTSVDKA+PETEDL
Sbjct: 61 SLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSLLSESVASSQVDSTSVDKAVPETEDL 120
Query: 520 QA---------------SVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRC 654
Q SVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRC
Sbjct: 121 QGPRAEGLVPPEWDPPPSVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRC 180
Query: 655 GNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 783
GNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 GNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 223
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,943,923
Number of extensions: 686489
Number of successful extensions: 2454
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 2434
Number of HSP's successfully gapped: 19
Length of query: 323
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 220
Effective length of database: 15,440,896
Effective search space: 3396997120
Effective search space used: 3396997120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007724
(969 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075361.2| AN1-type zinc finger protein 6 [Mus musculus]. 330 8e-91
Alignment gi|NP_033577.1| AN1-type zinc finger protein 5 [Mus musculus]. 202 3e-52
Alignment gi|NP_001074786.1| AN1-type zinc finger and ubiquitin domain-co... 77 3e-14
Alignment gi|NP_683728.1| AN1-type zinc finger protein 3 [Mus musculus]. 62 9e-10
>ref|NP_075361.2| AN1-type zinc finger protein 6 [Mus musculus].
Length = 223
Score = 330 bits (847), Expect = 8e-91
Identities = 168/223 (75%), Positives = 171/223 (76%), Gaps = 15/223 (6%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQ PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQAPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSSLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QC DGSVP+A V NQSLLSESVA SQVDSTSVDKA+ ETEDL
Sbjct: 61 SLPVQCADGSVPDAQSALDSTSSSMQPGPVSNQSLLSESVAPSQVDSTSVDKAVSETEDL 120
Query: 520 Q---------------ASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRC 654
Q +SVSDT QQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRC
Sbjct: 121 QGPRAEGLVPLECDPPSSVSDTTQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRC 180
Query: 655 GNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 783
GNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 GNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 223
>ref|NP_033577.1| AN1-type zinc finger protein 5 [Mus musculus].
Length = 213
Score = 202 bits (514), Expect = 3e-52
Identities = 106/213 (49%), Positives = 126/213 (59%), Gaps = 5/213 (2%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSN-----GRIXXXXXXX 324
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S G
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 325 XXXXXXXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIP 504
+ A +P ++E S + T+ +
Sbjct: 61 SDSASVQRADAGLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVS 120
Query: 505 ETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRY 684
E Q S S + S+ + K+ E PK KKNRCFMCRKKVGLTGF+CRCGN++CG+HRY
Sbjct: 121 EPVVTQPSPSVSQPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180
Query: 685 SDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 783
SD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ref|NP_001074786.1| AN1-type zinc finger and ubiquitin domain-containing protein 1 [Mus
musculus].
Length = 758
Score = 76.6 bits (187), Expect = 3e-14
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = +1
Query: 574 LEKPKQKKNRCFMCRKKVGL-TGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKEN 750
L+ K+ CF+C KK GL T FECRCGN +C HRY++ H C+Y+YK+ + + N
Sbjct: 688 LQTKKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCTYDYKSAGRRYLEEAN 747
Query: 751 PVVVGEKIQKI 783
PVV K+ KI
Sbjct: 748 PVVNAPKLPKI 758
>ref|NP_683728.1| AN1-type zinc finger protein 3 [Mus musculus].
Length = 205
Score = 61.6 bits (148), Expect = 9e-10
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 11/186 (5%)
Frame = +1
Query: 211 CGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXXXXXXQCTDGSVPEAXXX 390
CGF+G+ +T +CS C+ + ++Q D S P
Sbjct: 20 CGFWGSSKTMNLCSKCFADFQKKQPD------------------------DDSTPSTSNS 55
Query: 391 XXXXXXXXXXXXVPNQSLLSESVASSQVD-STSVDKAIPETEDLQASVSDTAQQPSEEQS 567
N S+ + +++ SQ T ++ P TE+ S ++ +
Sbjct: 56 QSDLFSEETTSDNNNTSVTTPTLSPSQQSLPTELNVTSPSTEEYSQSENEASPVKRPRLV 115
Query: 568 KSLEKP------KQK-KNRCFMCRKKVGLTGFE---CRCGNVYCGVHRYSDVHNCSYNYK 717
++ E+P KQK + RCF C+ K+ L E CRCG V+C +HR + H+C++++
Sbjct: 116 ENPERPEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHM 175
Query: 718 ADAAEK 735
E+
Sbjct: 176 GRGREE 181
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,352,794
Number of extensions: 592439
Number of successful extensions: 1994
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1981
Number of HSP's successfully gapped: 5
Length of query: 323
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 221
Effective length of database: 12,553,887
Effective search space: 2774409027
Effective search space used: 2774409027
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007724
(969 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928215.1| PREDICTED: AN1-type zinc finger protein 6 [S... 356 9e-99
Alignment gi|NP_001090975.1| AN1-type zinc finger protein 5 [Sus scrofa]. 204 8e-53
Alignment gi|XP_003133160.1| PREDICTED: LOW QUALITY PROTEIN: AN1-type zin... 76 2e-14
Alignment gi|XP_003128422.2| PREDICTED: AN1-type zinc finger protein 3-li... 54 2e-07
>ref|XP_001928215.1| PREDICTED: AN1-type zinc finger protein 6 [Sus scrofa].
Length = 208
Score = 356 bits (914), Expect = 9e-99
Identities = 177/208 (85%), Positives = 177/208 (85%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAPSVSSLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSVPEA VPNQSLLSESVASSQVDSTSVDKAIPETEDL
Sbjct: 61 SLPVQCTDGSVPEAQSTLDSTSSSLQPSPVPNQSLLSESVASSQVDSTSVDKAIPETEDL 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001090975.1| AN1-type zinc finger protein 5 [Sus scrofa].
Length = 213
Score = 204 bits (518), Expect = 8e-53
Identities = 108/213 (50%), Positives = 129/213 (60%), Gaps = 5/213 (2%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSN--GRIXXXXXXXXXX 333
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S +
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 334 XXXXXXQCTDGSVPE---AXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIP 504
Q D S+ A +P ++E S + T+ +
Sbjct: 61 SDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVS 120
Query: 505 ETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRY 684
E Q S S + S+ + K+ E PK KKNRCFMCRKKVGLTGF+CRCGN++CG+HRY
Sbjct: 121 EPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180
Query: 685 SDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 783
SD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ref|XP_003133160.1| PREDICTED: LOW QUALITY PROTEIN: AN1-type zinc finger and ubiquitin
domain-containing protein 1-like [Sus scrofa].
Length = 759
Score = 76.3 bits (186), Expect = 2e-14
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = +1
Query: 574 LEKPKQKKNRCFMCRKKVGL-TGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKEN 750
++ K+ CF+C KK GL T +ECRCGN +C HRY++ H+C+Y+YK+ +++ N
Sbjct: 689 IQTKKKTAKHCFLCGKKTGLATSYECRCGNNFCASHRYAETHSCTYDYKSAGRRYLQEAN 748
Query: 751 PVVVGEKIQKI 783
PVV K+ KI
Sbjct: 749 PVVNAPKLPKI 759
>ref|XP_003128422.2| PREDICTED: AN1-type zinc finger protein 3-like [Sus scrofa].
Length = 191
Score = 53.5 bits (127), Expect = 2e-07
Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Frame = +1
Query: 439 SLLSESVASSQVDSTSVDKAIPETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCR 618
SL++ + S DS S ++A P + + ++ ++P EE S+S +K ++ RCF C+
Sbjct: 73 SLITPTKRSCGTDSQSENEASPVK---RPRLLESTERP-EETSRSKQKSRR---RCFQCQ 125
Query: 619 KKVGLTGFE---CRCGNVYCGVHRYSDVHNCSYNYKADAAEK 735
K+ L E CRCG V+C +HR + H+C++++ E+
Sbjct: 126 TKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREE 167
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,092,591
Number of extensions: 425327
Number of successful extensions: 1392
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1386
Number of HSP's successfully gapped: 5
Length of query: 323
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,879,129
Effective search space: 1988924896
Effective search space used: 1988924896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007724
(969 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001229845.1| AN1-type zinc finger protein 6 isoform a [Ho... 350 8e-97
Alignment gi|NP_001229843.1| AN1-type zinc finger protein 6 isoform a [Ho... 350 8e-97
Alignment gi|NP_001229842.1| AN1-type zinc finger protein 6 isoform a [Ho... 350 8e-97
Alignment gi|NP_001229841.1| AN1-type zinc finger protein 6 isoform a [Ho... 350 8e-97
Alignment gi|NP_001229844.1| AN1-type zinc finger protein 6 isoform a [Ho... 350 8e-97
Alignment gi|NP_061879.2| AN1-type zinc finger protein 6 isoform a [Homo ... 350 8e-97
Alignment gi|NP_001229840.1| AN1-type zinc finger protein 6 isoform a [Ho... 350 8e-97
Alignment gi|NP_001229846.1| AN1-type zinc finger protein 6 isoform b [Ho... 346 2e-95
Alignment gi|NP_001229848.1| AN1-type zinc finger protein 6 isoform d [Ho... 320 2e-87
Alignment gi|NP_001229847.1| AN1-type zinc finger protein 6 isoform c [Ho... 256 2e-68
>ref|NP_001229845.1| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 350 bits (899), Expect = 8e-97
Identities = 173/208 (83%), Positives = 176/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSVPEA V NQSLLSESVASSQ+DSTSVDKA+PETED+
Sbjct: 61 SLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001229843.1| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 350 bits (899), Expect = 8e-97
Identities = 173/208 (83%), Positives = 176/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSVPEA V NQSLLSESVASSQ+DSTSVDKA+PETED+
Sbjct: 61 SLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001229842.1| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 350 bits (899), Expect = 8e-97
Identities = 173/208 (83%), Positives = 176/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSVPEA V NQSLLSESVASSQ+DSTSVDKA+PETED+
Sbjct: 61 SLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001229841.1| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 350 bits (899), Expect = 8e-97
Identities = 173/208 (83%), Positives = 176/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSVPEA V NQSLLSESVASSQ+DSTSVDKA+PETED+
Sbjct: 61 SLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001229844.1| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 350 bits (899), Expect = 8e-97
Identities = 173/208 (83%), Positives = 176/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSVPEA V NQSLLSESVASSQ+DSTSVDKA+PETED+
Sbjct: 61 SLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_061879.2| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 350 bits (899), Expect = 8e-97
Identities = 173/208 (83%), Positives = 176/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSVPEA V NQSLLSESVASSQ+DSTSVDKA+PETED+
Sbjct: 61 SLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001229840.1| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 350 bits (899), Expect = 8e-97
Identities = 173/208 (83%), Positives = 176/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSVPEA V NQSLLSESVASSQ+DSTSVDKA+PETED+
Sbjct: 61 SLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 121 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 180
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 181 CSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001229846.1| AN1-type zinc finger protein 6 isoform b [Homo sapiens].
Length = 196
Score = 346 bits (888), Expect = 2e-95
Identities = 173/208 (83%), Positives = 176/208 (84%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPV-------- 52
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSVPEA V NQSLLSESVASSQ+DSTSVDKA+PETED+
Sbjct: 53 ----QCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV 108
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 109 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 168
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 169 CSYNYKADAAEKIRKENPVVVGEKIQKI 196
>ref|NP_001229848.1| AN1-type zinc finger protein 6 isoform d [Homo sapiens].
Length = 181
Score = 320 bits (819), Expect = 2e-87
Identities = 160/208 (76%), Positives = 163/208 (78%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSVPEA S +DSTSVDKA+PETED+
Sbjct: 61 SLPVQCTDGSVPEA---------------------------QSALDSTSVDKAVPETEDV 93
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN
Sbjct: 94 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 153
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 154 CSYNYKADAAEKIRKENPVVVGEKIQKI 181
>ref|NP_001229847.1| AN1-type zinc finger protein 6 isoform c [Homo sapiens].
Length = 170
Score = 256 bits (655), Expect = 2e-68
Identities = 135/208 (64%), Positives = 138/208 (66%)
Frame = +1
Query: 160 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRIXXXXXXXXXXXX 339
MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRI
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSE 60
Query: 340 XXXXQCTDGSVPEAXXXXXXXXXXXXXXXVPNQSLLSESVASSQVDSTSVDKAIPETEDL 519
QCTDGSVPEA V NQSLLSESVASSQ+DSTSVDKA+PETED+
Sbjct: 61 SLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDV 120
Query: 520 QASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHN 699
Q GFECRCGNVYCGVHRYSDVHN
Sbjct: 121 Q--------------------------------------GFECRCGNVYCGVHRYSDVHN 142
Query: 700 CSYNYKADAAEKIRKENPVVVGEKIQKI 783
CSYNYKADAAEKIRKENPVVVGEKIQKI
Sbjct: 143 CSYNYKADAAEKIRKENPVVVGEKIQKI 170
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,606,638
Number of extensions: 684456
Number of successful extensions: 2276
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2255
Number of HSP's successfully gapped: 20
Length of query: 323
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 220
Effective length of database: 14,901,872
Effective search space: 3278411840
Effective search space used: 3278411840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007724
(969 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 573 e-161
Sscrofa_Chr07 507 e-141
Sscrofa_Chr06 208 4e-51
>Sscrofa_ChrX
|| Length = 144288218
Score = 573 bits (289), Expect = e-161
Identities = 535/626 (85%), Gaps = 15/626 (2%)
Strand = Plus / Minus
Query: 293 atggtagaataagcccacctgcaccttctgtcagtagtctgtctgagtctttaccagttc 352
||||||| |||||| |||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 83356475 atggtagcataagcgcacctgtaccttctgtcagtagtccatctgagtctttaccagttc 83356416
Query: 353 agtgcacagatggcagtgtcccagaagctcagtcaacgttagactctacatcttcatctt 412
|||||||||| |||| | ||||||||||||||| ||| ||| ||||||||| |||||||
Sbjct: 83356415 agtgcacagaaggcaatctcccagaagctcagttaacattatactctacattttcatcta 83356356
Query: 413 tgcagccaagccctgtaccaaatcagtcacttttatcagaatctgtagcatcatcccaag 472
|||||||||||||| || |||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 83356355 tgcagccaagccctatatcaaatcagtcacttttatcacaatctgtagcatcttcccaag 83356296
Query: 473 tggacagtacatctgtggataaagcaatacctgaaacagaagacctgcaagcttcagtat 532
| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 83356295 tcaacagtacatctgtggacaaagcaatacctgaaacagaagacctgcaaccttcagtat 83356236
Query: 533 cagatacggcacagcagccatctgaagagcaaagcaagtctcttgnnnnnnnnnnnnnnn 592
| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 83356235 cggataccgcacagcagccatctgaagagcaaagcaaatctcttgaaaaaccaaaacaaa 83356176
Query: 593 nnnngaatcgctgtttcatgtgcaggaagaaagtgggacttactgggtttgaatgccggt 652
||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 83356175 aaaataattgctgtttcatgtgcaggaagaaagtgggaattactgggttttaatgctggt 83356116
Query: 653 gtggaaatgtttactgtggtgtacaccgttactcagatgtacacaattgctcttacaatt 712
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 83356115 gtggaaatgtttactatggtgtacaccgttactcagatgaacacaattgctcttacaatt 83356056
Query: 713 acaaagctgatgctgctgagaaaatcagaaaagaaaatccagtagttgttggtgaaaaga 772
|||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct: 83356055 acaaagctgacactgctg-------------agaaaatccagtagttgttggtgaaaaaa 83356009
Query: 773 tccagaagatttgaactcctgctggaatacaaaatcctttgaccatctgcaaactaaaaa 832
||||||| ||||||||||||||| ||| |||||||||||| |||||||||||| |||
Sbjct: 83356008 tccagaaaatttgaactcctgctataattaaaaatcctttga-catctgcaaactgaaag 83355950
Query: 833 ttgacttgagg-nnnnnnnncctagtcattgggaatgtaaagcaatgtatcttgcataga 891
||||| ||||| ||| ||||||||||||| | |||| |||||| ||||||||
Sbjct: 83355949 ttgacgtgaggtgtttttcccctggtcattgggaatgcagagcactgtatcctgcataga 83355890
Query: 892 ccttttaatcatgcatgtcatcagaa 917
| ||||||||||||| ||||||||||
Sbjct: 83355889 cgttttaatcatgcacgtcatcagaa 83355864
Score = 573 bits (289), Expect = e-161
Identities = 535/626 (85%), Gaps = 15/626 (2%)
Strand = Plus / Minus
Query: 293 atggtagaataagcccacctgcaccttctgtcagtagtctgtctgagtctttaccagttc 352
||||||| |||||| |||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 83544154 atggtagcataagcgcacctgtaccttctgtcagtagtccatctgagtctttaccagttc 83544095
Query: 353 agtgcacagatggcagtgtcccagaagctcagtcaacgttagactctacatcttcatctt 412
|||||||||| |||| | ||||||||||||||| ||| ||| ||||||||| |||||||
Sbjct: 83544094 agtgcacagaaggcaatctcccagaagctcagttaacattatactctacattttcatcta 83544035
Query: 413 tgcagccaagccctgtaccaaatcagtcacttttatcagaatctgtagcatcatcccaag 472
|||||||||||||| || |||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 83544034 tgcagccaagccctatatcaaatcagtcacttttatcacaatctgtagcatcttcccaag 83543975
Query: 473 tggacagtacatctgtggataaagcaatacctgaaacagaagacctgcaagcttcagtat 532
| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 83543974 tcaacagtacatctgtggacaaagcaatacctgaaacagaagacctgcaaccttcagtat 83543915
Query: 533 cagatacggcacagcagccatctgaagagcaaagcaagtctcttgnnnnnnnnnnnnnnn 592
| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 83543914 cggataccgcacagcagccatctgaagagcaaagcaaatctcttgaaaaaccaaaacaaa 83543855
Query: 593 nnnngaatcgctgtttcatgtgcaggaagaaagtgggacttactgggtttgaatgccggt 652
||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 83543854 aaaataattgctgtttcatgtgcaggaagaaagtgggaattactgggttttaatgctggt 83543795
Query: 653 gtggaaatgtttactgtggtgtacaccgttactcagatgtacacaattgctcttacaatt 712
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 83543794 gtggaaatgtttactatggtgtacaccgttactcagatgaacacaattgctcttacaatt 83543735
Query: 713 acaaagctgatgctgctgagaaaatcagaaaagaaaatccagtagttgttggtgaaaaga 772
|||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct: 83543734 acaaagctgacactgctg-------------agaaaatccagtagttgttggtgaaaaaa 83543688
Query: 773 tccagaagatttgaactcctgctggaatacaaaatcctttgaccatctgcaaactaaaaa 832
||||||| ||||||||||||||| ||| |||||||||||| |||||||||||| |||
Sbjct: 83543687 tccagaaaatttgaactcctgctataattaaaaatcctttga-catctgcaaactgaaag 83543629
Query: 833 ttgacttgagg-nnnnnnnncctagtcattgggaatgtaaagcaatgtatcttgcataga 891
||||| ||||| ||| ||||||||||||| | |||| |||||| ||||||||
Sbjct: 83543628 ttgacgtgaggtgtttttcccctggtcattgggaatgcagagcactgtatcctgcataga 83543569
Query: 892 ccttttaatcatgcatgtcatcagaa 917
| ||||||||||||| ||||||||||
Sbjct: 83543568 cgttttaatcatgcacgtcatcagaa 83543543
>Sscrofa_Chr07
|| Length = 134764511
Score = 507 bits (256), Expect = e-141
Identities = 278/288 (96%)
Strand = Plus / Plus
Query: 637 gggtttgaatgccggtgtggaaatgtttactgtggtgtacaccgttactcagatgtacac 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54542035 gggtttgaatgccggtgtggaaatgtttactgtggtgtacaccgttactcagatgtacac 54542094
Query: 697 aattgctcttacaattacaaagctgatgctgctgagaaaatcagaaaagaaaatccagta 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54542095 aattgctcttacaattacaaagctgatgctgctgagaaaatcagaaaagaaaatccagta 54542154
Query: 757 gttgttggtgaaaagatccagaagatttgaactcctgctggaatacaaaatcctttgacc 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54542155 gttgttggtgaaaagatccagaagatttgaactcctgctggaatacaaaatcctttgacc 54542214
Query: 817 atctgcaaactaaaaattgacttgaggnnnnnnnncctagtcattgggaatgtaaagcaa 876
||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 54542215 atctgcaaactaaaaattgacttgaggttttttttcctagtcattgggaatgtagagcaa 54542274
Query: 877 tgtatcttgcatagaccttttaatcatgcatgtcatcagaaaaataga 924
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 54542275 tgtatcttgcatagaccttttaatcatgcatgtcatcagaagaataga 54542322
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 140 caggtgtgcatcagaggaacatggctcaagaaactaatcacagccaagtgcctatgcttt 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54527451 caggtgtgcatcagaggaacatggctcaagaaactaatcacagccaagtgcctatgcttt 54527510
Query: 200 gttccactggctgcggattttatggaaaccctcgtacaaacggcatgtgttcagtatgct 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54527511 gttccactggctgcggattttatggaaaccctcgtacaaacggcatgtgttcagtatgct 54527570
Query: 260 ataaagaacatcttcaaagacagaatagtagtaatggtagaataagcccacctg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54527571 ataaagaacatcttcaaagacagaatagtagtaatggtagaataagcccacctg 54527624
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 313 gcaccttctgtcagtagtctgtctgagtctttaccagttcagtgcacagatggcagtgtc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54528854 gcaccttctgtcagtagtctgtctgagtctttaccagttcagtgcacagatggcagtgtc 54528913
Query: 373 ccagaagctcagtcaacgttagactctacatcttcatctttgcagccaag 422
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54528914 ccagaagctcagtcaacgttagactctacatcttcatctttgcagccaag 54528963
Score = 204 bits (103), Expect = 6e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 421 agccctgtaccaaatcagtcacttttatcagaatctgtagcatcatcccaagtggacagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54530016 agccctgtaccaaatcagtcacttttatcagaatctgtagcatcatcccaagtggacagt 54530075
Query: 481 acatctgtggataaagcaatacctgaaacagaagacctgcaag 523
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54530076 acatctgtggataaagcaatacctgaaacagaagacctgcaag 54530118
Score = 119 bits (60), Expect = 3e-24
Identities = 98/117 (83%)
Strand = Plus / Plus
Query: 522 agcttcagtatcagatacggcacagcagccatctgaagagcaaagcaagtctcttgnnnn 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54539542 agcttcagtatcagatacggcacagcagccatctgaagagcaaagcaagtctcttgaaaa 54539601
Query: 582 nnnnnnnnnnnnnnngaatcgctgtttcatgtgcaggaagaaagtgggacttactgg 638
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54539602 accaaaacaaaaaaagaatcgctgtttcatgtgcaggaagaaagtgggacttactgg 54539658
>Sscrofa_Chr06
|| Length = 157765593
Score = 208 bits (105), Expect = 4e-51
Identities = 160/175 (91%), Gaps = 5/175 (2%)
Strand = Plus / Plus
Query: 666 ctgtggtgtacaccgttactcagatgtacacaattgctcttacaattacaaagctgatgc 725
||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 46574834 ctgtggtgtgcaccatta-tcagatgtacacaattgctcttaccattacaaagctgatgc 46574892
Query: 726 tgctgagaaaatcagaaaagaaaatccagtagttgttggtgaaaagatccagaagatttg 785
|||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct: 46574893 tgctaagaaaatcagaaaggaaaatccagtagttgttggtgaaaagatcccgaaggt--- 46574949
Query: 786 aactcctgctggaatac-aaaatcctttgaccatctgcaaactaaaaattgactt 839
|||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct: 46574950 aactcctgctagaatacaaaaaccctttgaccatctgcaaactaaatattgactt 46575004
Score = 200 bits (101), Expect = 1e-48
Identities = 168/189 (88%), Gaps = 1/189 (0%)
Strand = Plus / Plus
Query: 167 aagaaactaatcacagccaagtgcctatgctttgttccactggctgcggattttatggaa 226
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 46574109 aagaaactaatcacagccaagtgcctgtgctttgttccactggctgcggattttatggag 46574168
Query: 227 accctcgtacaaacggcatgtgttcagtatgctataaagaacatcttcaaagacagaata 286
||| | ||| ||| ||| ||||||||| ||||| ||||| |||||||||| |||||||||
Sbjct: 46574169 acctttgtagaaatggcctgtgttcagcatgctgtaaag-acatcttcaaggacagaata 46574227
Query: 287 gtagtaatggtagaataagcccacctgcaccttctgtcagtagtctgtctgagtctttac 346
|| |||||||| | |||||||| | ||||||||||||||||||||||||| | |||||
Sbjct: 46574228 gtggtaatggtggggtaagcccatcggcaccttctgtcagtagtctgtctggggctttat 46574287
Query: 347 cagttcagt 355
||| |||||
Sbjct: 46574288 cagctcagt 46574296
Score = 141 bits (71), Expect = 8e-31
Identities = 164/194 (84%), Gaps = 2/194 (1%)
Strand = Plus / Plus
Query: 378 agctcagtcaacgttagactctacatcttcatctttgcagccaagccctgtaccaaatca 437
|||||||||| | |||| |||| | ||||||||| || ||| ||||||||| |||| ||
Sbjct: 46574289 agctcagtcagcattagcctctgcctcttcatctatgtggccgagccctgtatcaaagca 46574348
Query: 438 gtcacttttatcagaatctgtagcatcatcccaagtggacagtacatctgtggataaagc 497
|||||||||||||||||||||||| |||||||||||||||| |||| |||| |||||
Sbjct: 46574349 gtcacttttatcagaatctgtagcgccatcccaagtggacagcgcatc--tggacaaagc 46574406
Query: 498 aatacctgaaacagaagacctgcaagcttcagtatcagatacggcacagcagccatctga 557
| |||||||||||||||| || | || || |||||||| | |||||||||||||| |
Sbjct: 46574407 actacctgaaacagaagatcttcgaggtttggtatcagaagcatcacagcagccatctaa 46574466
Query: 558 agagcaaagcaagt 571
||||||||||||||
Sbjct: 46574467 agagcaaagcaagt 46574480
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,684,316
Number of extensions: 177
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 21
Length of query: 969
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 948
Effective length of database: 2,808,413,156
Effective search space: 2662375671888
Effective search space used: 2662375671888
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)