Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007729
(1128 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092558.1| CREB/ATF bZIP transcription factor [Bos taur... 147 2e-35
Alignment gi|NP_001077152.1| cyclic AMP-dependent transcription factor AT... 50 5e-06
>ref|NP_001092558.1| CREB/ATF bZIP transcription factor [Bos taurus].
Length = 359
Score = 147 bits (371), Expect = 2e-35
Identities = 86/167 (51%), Positives = 90/167 (53%)
Frame = +1
Query: 319 MRHSLTKLLAASGSDSPTRSESPAPAATFSLPPDLSRXXXXXXXXXXXXSPGRKQPRGNE 498
MRHSLTKLLAASGSDSPTRSESPAP AT SLPPDL+ SPGR+QPRG+E
Sbjct: 1 MRHSLTKLLAASGSDSPTRSESPAPVATCSLPPDLT-GAAEDEGTAAAGSPGRRQPRGDE 59
Query: 499 GESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDETEDMDFLSGLELADLLDPRQPDWHX 678
GES G+ETEDMDFLSGLELADLLDPRQPDWH
Sbjct: 60 GESEAGRGGRGGVAARAPSPEEMEEEAMASVPGEETEDMDFLSGLELADLLDPRQPDWHL 119
Query: 679 XXXXXXXXXXXXXXXXXXXXXXWRGXXXXXXXXXXMQRFSDLLQRLL 819
WRG MQRFSDLLQRLL
Sbjct: 120 EPGLSSPGPLSSSGGGSESGGLWRGDDDDEAAAAEMQRFSDLLQRLL 166
Score = 101 bits (251), Expect = 1e-21
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = +1
Query: 973 RLNRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAV 1128
RLNRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAV
Sbjct: 223 RLNRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAV 274
>ref|NP_001077152.1| cyclic AMP-dependent transcription factor ATF-6 beta [Bos taurus].
Length = 707
Score = 49.7 bits (117), Expect = 5e-06
Identities = 23/48 (47%), Positives = 36/48 (75%)
Frame = +1
Query: 979 NRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLR 1122
+R KKKEY+ GLE+R++ + A+NQ+LR EN L +R++AL E+ L+
Sbjct: 339 SRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLTENSELK 386
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.316 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,498,229
Number of extensions: 934068
Number of successful extensions: 5697
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5628
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007729
(1128 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533989.1| PREDICTED: similar to HCF-binding transcription... 155 7e-38
Alignment gi|XP_860638.1| PREDICTED: similar to Cyclic-AMP-dependent tran... 50 5e-06
Alignment gi|XP_532089.2| PREDICTED: similar to Cyclic-AMP-dependent tran... 50 5e-06
>ref|XP_533989.1| PREDICTED: similar to HCF-binding transcription factor Zhangfei
[Canis familiaris].
Length = 283
Score = 155 bits (392), Expect = 7e-38
Identities = 93/178 (52%), Positives = 94/178 (52%)
Frame = +1
Query: 595 GDETEDMDFLSGLELADLLDPRQPDWHXXXXXXXXXXXXXXXXXXXXXXXWRGXXXXXXX 774
G+ETEDMDFLSGLELADLLDPRQPDWH WRG
Sbjct: 11 GEETEDMDFLSGLELADLLDPRQPDWHLEPGLSSPGPLSSSGGGSDSGGLWRGDDDDEAA 70
Query: 775 XXXMQRFSDLLQRLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 954
MQRFSDLLQRLL
Sbjct: 71 AAEMQRFSDLLQRLLNGIGGCSSGSDSGSGEKRRRKSPGGGGGGSGGNDSNQAATKSPRK 130
Query: 955 XXXXXXRLNRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAV 1128
RLNRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAV
Sbjct: 131 AAAAAARLNRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAV 188
>ref|XP_860638.1| PREDICTED: similar to Cyclic-AMP-dependent transcription factor ATF-6
beta (Activating transcription factor 6 beta) (ATF6-beta)
(cAMP responsive element binding protein-like 1) (cAMP
response element binding protein-related protein)
(Creb-rp) (G13 protein)... isofor [Canis familiaris].
Length = 699
Score = 49.7 bits (117), Expect = 5e-06
Identities = 23/48 (47%), Positives = 36/48 (75%)
Frame = +1
Query: 979 NRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLR 1122
+R KKKEY+ GLE+R++ + A+NQ+LR EN L +R++AL E+ L+
Sbjct: 338 SRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSELK 385
>ref|XP_532089.2| PREDICTED: similar to Cyclic-AMP-dependent transcription factor ATF-6
beta (Activating transcription factor 6 beta) (ATF6-beta)
(cAMP responsive element binding protein-like 1) (cAMP
response element binding protein-related protein)
(Creb-rp) (G13 protein)... isofor [Canis familiaris].
Length = 703
Score = 49.7 bits (117), Expect = 5e-06
Identities = 23/48 (47%), Positives = 36/48 (75%)
Frame = +1
Query: 979 NRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLR 1122
+R KKKEY+ GLE+R++ + A+NQ+LR EN L +R++AL E+ L+
Sbjct: 342 SRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSELK 389
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.316 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,935,657
Number of extensions: 789790
Number of successful extensions: 6133
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6068
Number of HSP's successfully gapped: 4
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007729
(1128 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_660133.2| CREB/ATF bZIP transcription factor [Mus musculu... 165 5e-41
Alignment gi|NP_059102.1| cyclic AMP-dependent transcription factor ATF-6... 49 6e-06
>ref|NP_660133.2| CREB/ATF bZIP transcription factor [Mus musculus].
Length = 358
Score = 165 bits (418), Expect = 5e-41
Identities = 120/278 (43%), Positives = 126/278 (45%), Gaps = 8/278 (2%)
Frame = +1
Query: 319 MRHSLTKLLAASGSDSPTRSESPAPAATFSLPPDLSRXXXXXXXXXXXXSPGRKQPRGNE 498
MRHSLTKLLAASG D P+R +S P AT + PP SP R+QP G +
Sbjct: 1 MRHSLTKLLAASGRDFPSRRDSREPPATRA-PPREPSGAAAGAETPRPGSPDREQPHG-D 58
Query: 499 GESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGD--------ETEDMDFLSGLELADLLD 654
G+ D E EDMDFLSGLELADLLD
Sbjct: 59 GDGGEPEARSGSRGSVAVRAPAPSPLKMEEEEEDAIAMVPKEEPEDMDFLSGLELADLLD 118
Query: 655 PRQPDWHXXXXXXXXXXXXXXXXXXXXXXXWRGXXXXXXXXXXMQRFSDLLQRLLXXXXX 834
PRQPDWH RG MQRFSDLLQRLL
Sbjct: 119 PRQPDWHLEPGLSSPGPLSSSGGGSESGGLLRGDDDDDTAAAEMQRFSDLLQRLLNGIGG 178
Query: 835 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLNRLKKKEYVMGL 1014
RLNRLKKKEYVMGL
Sbjct: 179 CSSGGDRGGGEKRRRKSPGAGGGGANDGNQAATKSPRKAAAAAA--RLNRLKKKEYVMGL 236
Query: 1015 ESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAV 1128
ESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAV
Sbjct: 237 ESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAV 274
>ref|NP_059102.1| cyclic AMP-dependent transcription factor ATF-6 beta [Mus musculus].
Length = 699
Score = 49.3 bits (116), Expect = 6e-06
Identities = 23/48 (47%), Positives = 36/48 (75%)
Frame = +1
Query: 979 NRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLR 1122
+R KKKEY+ GLE+R++ + A+NQ+LR EN L +R++AL E+ L+
Sbjct: 339 SRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSGLK 386
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.316 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,153,702
Number of extensions: 604047
Number of successful extensions: 4310
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4270
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007729
(1128 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129769.2| PREDICTED: CREB/ATF bZIP transcription facto... 241 5e-64
Alignment gi|NP_001116575.1| cyclic AMP-dependent transcription factor AT... 51 1e-06
>ref|XP_003129769.2| PREDICTED: CREB/ATF bZIP transcription factor-like isoform 1 [Sus
scrofa].
Length = 354
Score = 241 bits (615), Expect = 5e-64
Identities = 145/270 (53%), Positives = 145/270 (53%)
Frame = +1
Query: 319 MRHSLTKLLAASGSDSPTRSESPAPAATFSLPPDLSRXXXXXXXXXXXXSPGRKQPRGNE 498
MRHSLTKLLAASGSDSPTRSESPAPAATFSLPPDLSR SPGRKQPRGNE
Sbjct: 1 MRHSLTKLLAASGSDSPTRSESPAPAATFSLPPDLSRAAAEDEGTAAAGSPGRKQPRGNE 60
Query: 499 GESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDETEDMDFLSGLELADLLDPRQPDWHX 678
GES GDETEDMDFLSGLELADLLDPRQPDWH
Sbjct: 61 GESEAGRGGRGGVAVRAPSPEEMEEEAVASVPGDETEDMDFLSGLELADLLDPRQPDWHL 120
Query: 679 XXXXXXXXXXXXXXXXXXXXXXWRGXXXXXXXXXXMQRFSDLLQRLLXXXXXXXXXXXXX 858
WRG MQRFSDLLQRLL
Sbjct: 121 EPGLSSPGPLSSSGGGSESGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSGSDTG 180
Query: 859 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLNRLKKKEYVMGLESRVRGLA 1038
RLNRLKKKEYVMGLESRVRGLA
Sbjct: 181 GGEKRRRKSPGGGGGSSGGNDNNQAATKSPRKAAAAAARLNRLKKKEYVMGLESRVRGLA 240
Query: 1039 AENQELRAENRELGKRVQALQEESRYLRAV 1128
AENQELRAENRELGKRVQALQEESRYLRAV
Sbjct: 241 AENQELRAENRELGKRVQALQEESRYLRAV 270
>ref|NP_001116575.1| cyclic AMP-dependent transcription factor ATF-6 beta [Sus scrofa].
Length = 698
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +1
Query: 979 NRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLR 1122
+R KKKEY+ GLE+R++ + A+NQ+LR EN L +R++AL E+ LR
Sbjct: 339 SRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSELR 386
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.316 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,767,856
Number of extensions: 870206
Number of successful extensions: 4058
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4014
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007729
(1128 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034707.1| CREB/ATF bZIP transcription factor [Homo sap... 218 8e-57
Alignment gi|NP_001129625.1| cyclic AMP-dependent transcription factor AT... 50 5e-06
Alignment gi|NP_004372.3| cyclic AMP-dependent transcription factor ATF-6... 50 5e-06
>ref|NP_001034707.1| CREB/ATF bZIP transcription factor [Homo sapiens].
Length = 354
Score = 218 bits (555), Expect = 8e-57
Identities = 135/270 (50%), Positives = 139/270 (51%)
Frame = +1
Query: 319 MRHSLTKLLAASGSDSPTRSESPAPAATFSLPPDLSRXXXXXXXXXXXXSPGRKQPRGNE 498
MRHSLTKLLAASGS+SPTRSESP PAAT SLP DL+R SPGRKQ G+E
Sbjct: 1 MRHSLTKLLAASGSNSPTRSESPEPAATCSLPSDLTRAAAGEEETAAAGSPGRKQQFGDE 60
Query: 499 GESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDETEDMDFLSGLELADLLDPRQPDWHX 678
GE G+ETEDMDFLSGLELADLLDPRQPDWH
Sbjct: 61 GELEAGRGSRGGVAVRAPSPEEMEEEAIASLPGEETEDMDFLSGLELADLLDPRQPDWHL 120
Query: 679 XXXXXXXXXXXXXXXXXXXXXXWRGXXXXXXXXXXMQRFSDLLQRLLXXXXXXXXXXXXX 858
WRG MQRFSDLLQRLL
Sbjct: 121 DPGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSSSDSG 180
Query: 859 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLNRLKKKEYVMGLESRVRGLA 1038
RLNRLKKKEYVMGLESRVRGLA
Sbjct: 181 SAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKAAAAAARLNRLKKKEYVMGLESRVRGLA 240
Query: 1039 AENQELRAENRELGKRVQALQEESRYLRAV 1128
AENQELRAENRELGKRVQALQEESRYLRAV
Sbjct: 241 AENQELRAENRELGKRVQALQEESRYLRAV 270
>ref|NP_001129625.1| cyclic AMP-dependent transcription factor ATF-6 beta isoform b [Homo
sapiens].
Length = 700
Score = 49.7 bits (117), Expect = 5e-06
Identities = 23/48 (47%), Positives = 36/48 (75%)
Frame = +1
Query: 979 NRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLR 1122
+R KKKEY+ GLE+R++ + A+NQ+LR EN L +R++AL E+ L+
Sbjct: 339 SRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSELK 386
>ref|NP_004372.3| cyclic AMP-dependent transcription factor ATF-6 beta isoform a [Homo
sapiens].
Length = 703
Score = 49.7 bits (117), Expect = 5e-06
Identities = 23/48 (47%), Positives = 36/48 (75%)
Frame = +1
Query: 979 NRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLR 1122
+R KKKEY+ GLE+R++ + A+NQ+LR EN L +R++AL E+ L+
Sbjct: 342 SRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSELK 389
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.316 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,985,750
Number of extensions: 742878
Number of successful extensions: 5558
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5509
Number of HSP's successfully gapped: 4
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007729
(1128 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 954 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 954 bits (481), Expect = 0.0
Identities = 500/509 (98%)
Strand = Plus / Minus
Query: 1 cagaactctcgcgataccaggccctggtggagcgggaaatgtggtgggaggggccgggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21865253 cagaactctcgcgataccaggccctggtggagcgggaaatgtggtgggaggggccgggcc 21865194
Query: 61 aagatcgaccgacttccggccaggccgttgtctgggtggcgcggtcgagtcatcgttggg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21865193 gagatcgaccgacttccggccaggccgttgtctgggtggcgcggtcgagtcatcgttggg 21865134
Query: 121 cctcgccgctccgatctcccgtccctnnnnnnnngccgcagcgcggggggtcgaccagcc 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21865133 cctcgccgctccgatctcccgtccctccccccccgccgcagcgcggggggtcgaccagcc 21865074
Query: 181 aagtgggggcgggaggtgactccgaccttccccttcacttcgttctggcctgcaccccgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21865073 aagtgggggcgggaggtgactccgaccttccccttcacttcgttctggcctgcaccccgg 21865014
Query: 241 caacctgctctgggtccttgggacccgcgaggcccggtctgaggggccggggcctacgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21865013 caacctgctctgggtccttgggacccgcgaggcccggtctgaggggccggggcctacgtg 21864954
Query: 301 ggcccgctgccgggccccatgaggcatagcctgaccaaactgctggcggcctcgggcagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21864953 ggcccgctgccgggccccatgaggcatagcctgaccaaactgctggcggcctcgggcagc 21864894
Query: 361 gactccccaacccgcagcgagagcccggcgccggccgcgaccttctcgctgcccccggac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21864893 gactccccaacccgcagcgagagcccggcgccggccgcgaccttctcgctgcccccggac 21864834
Query: 421 ctgagccgggcggcggcggaggacgaggggacggcggcggccggatctcctggccgcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21864833 ctgagccgggcggcggcggaggacgaggggacggcggcggccggatctcctggccgcaaa 21864774
Query: 481 cagcctcgcggaaacgagggcgagtcgga 509
|||||||||||||||||||||||||||||
Sbjct: 21864773 cagcctcgcggaaacgagggcgagtcgga 21864745
Score = 533 bits (269), Expect = e-149
Identities = 269/269 (100%)
Strand = Plus / Minus
Query: 553 tcgcccgaggagatggaggaggaggcggtcgccagcgtccccggggacgaaacggaggac 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21864701 tcgcccgaggagatggaggaggaggcggtcgccagcgtccccggggacgaaacggaggac 21864642
Query: 613 atggactttctgtccgggctggaactggcggatctgctggacccccggcagccagactgg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21864641 atggactttctgtccgggctggaactggcggatctgctggacccccggcagccagactgg 21864582
Query: 673 cacctggagcccgggctcagctcgcccgggcctctctcctcgtccggcggaggctcggag 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21864581 cacctggagcccgggctcagctcgcccgggcctctctcctcgtccggcggaggctcggag 21864522
Query: 733 agcggtggcctgtggcgaggggacgacgacgacgaggccgcggccgctgagatgcagcgc 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21864521 agcggtggcctgtggcgaggggacgacgacgacgaggccgcggccgctgagatgcagcgc 21864462
Query: 793 ttttctgacctgctgcagaggctgctaaa 821
|||||||||||||||||||||||||||||
Sbjct: 21864461 ttttctgacctgctgcagaggctgctaaa 21864433
Score = 303 bits (153), Expect = 1e-79
Identities = 156/157 (99%)
Strand = Plus / Minus
Query: 972 tcgtctgaatcggctgaagaagaaggagtacgtgatggggctggagagccgagtccgggg 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21864282 tcgtctgaatcggctgaagaagaaggagtacgtgatggggctggagagccgagtccgggg 21864223
Query: 1032 tctggcagcagagaaccaggagctgcgggccgagaatcgggagctgggcaagcgcgtcca 1091
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21864222 tctggcagccgagaaccaggagctgcgggccgagaatcgggagctgggcaagcgcgtcca 21864163
Query: 1092 agcactgcaggaggagagtcgctacctacgggccgtc 1128
|||||||||||||||||||||||||||||||||||||
Sbjct: 21864162 agcactgcaggaggagagtcgctacctacgggccgtc 21864126
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 16,547,860
Number of extensions: 130
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 4
Length of query: 1128
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1107
Effective length of database: 2,808,413,156
Effective search space: 3108913363692
Effective search space used: 3108913363692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)