Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007731
(976 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069017.1| acetyl-CoA acetyltransferase, cytosolic [Bos... 540 e-153
Alignment gi|NP_001039540.1| acetyl-CoA acetyltransferase, mitochondrial ... 218 6e-57
Alignment gi|NP_001030419.1| 3-ketoacyl-CoA thiolase, mitochondrial [Bos ... 215 4e-56
Alignment gi|NP_001029491.1| 3-ketoacyl-CoA thiolase, peroxisomal [Bos ta... 159 5e-39
Alignment gi|NP_776761.1| trifunctional enzyme subunit beta, mitochondria... 114 1e-25
>ref|NP_001069017.1| acetyl-CoA acetyltransferase, cytosolic [Bos taurus].
Length = 397
Score = 540 bits (1390), Expect = e-153
Identities = 271/306 (88%), Positives = 287/306 (93%)
Frame = +1
Query: 58 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
MSA SDPVVIVSAART+IGSFNGALSTVPVHDLGSTVIREVLKRA V P+EVSEVIFGHV
Sbjct: 1 MSADSDPVVIVSAARTIIGSFNGALSTVPVHDLGSTVIREVLKRAAVAPEEVSEVIFGHV 60
Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
L AGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQ+I +GDS IVVAGGME
Sbjct: 61 LAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIRIGDSSIVVAGGME 120
Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
NMSKAPHLVHLRTGV++GE L DSILCDGLTDAFHNYHMGITAENVA++WQVSREDQD+
Sbjct: 121 NMSKAPHLVHLRTGVKIGETPLADSILCDGLTDAFHNYHMGITAENVARQWQVSREDQDK 180
Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 777
+A LSQ+RTE AQKAGHFDKEIVPVFVSS+KG+TEVKTDEFPR GS +EA+SKLKP FL
Sbjct: 181 VAVLSQNRTEHAQKAGHFDKEIVPVFVSSKKGLTEVKTDEFPRHGSNMEAVSKLKPCFLM 240
Query: 778 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
DGTGTVTPANASGINDGAAAVVLMKKSEA NRGLTPLA IVSW+QA VEPSIMG GPIPA
Sbjct: 241 DGTGTVTPANASGINDGAAAVVLMKKSEAGNRGLTPLAQIVSWAQAGVEPSIMGIGPIPA 300
Query: 958 IKQAVA 975
IKQAVA
Sbjct: 301 IKQAVA 306
>ref|NP_001039540.1| acetyl-CoA acetyltransferase, mitochondrial precursor [Bos taurus].
Length = 422
Score = 218 bits (555), Expect = 6e-57
Identities = 128/300 (42%), Positives = 180/300 (60%), Gaps = 2/300 (0%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
VVIVSA RT IGSF G+LS++P LGS I+ +++A + +EV E G+VL G GQ
Sbjct: 37 VVIVSAIRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQ 96
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 438
P RQA +GAG+P S P + +C SG+KA+ +A+Q + G ++VAGGME+MS P+
Sbjct: 97 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY 156
Query: 439 LVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 618
+++ R G L D I+ DGLTD ++ HMG AEN AKK ++RE+QD A S
Sbjct: 157 VMN-RGATPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNITREEQDTYALNSYT 215
Query: 619 RTEKAQKAGHFDKEIVPV--FVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 792
R++ A +AG F E+VPV V + V + +E+ R + KLK F + GT
Sbjct: 216 RSKAAWEAGRFGNEVVPVTITVKGKPDVVVKEDEEYKR--VDFSKIPKLKTVFQRE-NGT 272
Query: 793 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
VT ANAS +NDGAAAVVLM A+ + PLA I +++ A+VEP P A+ + +
Sbjct: 273 VTAANASTLNDGAAAVVLMTADAAKRLNVKPLARIAAFADAAVEPIDFPLAPAYAVPKVL 332
>ref|NP_001030419.1| 3-ketoacyl-CoA thiolase, mitochondrial [Bos taurus].
Length = 397
Score = 215 bits (548), Expect = 4e-56
Identities = 121/300 (40%), Positives = 171/300 (57%), Gaps = 2/300 (0%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
V IV+A RT G++ G L D+ R L V P+ V V+ G+V+ +
Sbjct: 7 VFIVAAKRTPFGAYGGLLKDFTPTDMAEFAARAALSAGRVSPETVDSVVVGNVMQSSSDA 66
Query: 259 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 435
+ R + GIP PA + +CGSG +++ Q I DS +V+ GG E+MS+AP
Sbjct: 67 IYLARHVGLRVGIPKETPAITINRLCGSGFQSIVSGCQEICSRDSEVVLCGGTESMSQAP 126
Query: 436 HLV-HLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALS 612
+ V ++R G +LG + L GLTD M ITAEN+A K Q+SRED DR A S
Sbjct: 127 YCVRNIRFGTKLGSELKLEDTLWTGLTDTHVQMPMAITAENLAVKHQISREDCDRYALQS 186
Query: 613 QDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 792
Q R + A AG+FD E+ PV V +RKG ++ DE PRP +T+E ++KL P F + GT
Sbjct: 187 QQRWKTANDAGYFDNEMAPVEVKTRKGKQTMQVDEHPRPQTTMEQLNKLPPVFKKE--GT 244
Query: 793 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
VT NASG++DGA AV++ + + TPLA IV + + +P+IMG GP+PAI A+
Sbjct: 245 VTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPTIMGIGPVPAISGAL 304
>ref|NP_001029491.1| 3-ketoacyl-CoA thiolase, peroxisomal [Bos taurus].
Length = 424
Score = 159 bits (401), Expect = 5e-39
Identities = 116/309 (37%), Positives = 162/309 (52%), Gaps = 6/309 (1%)
Frame = +1
Query: 64 AGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVL 240
A ++ VV+V RT IG S G +L S V+ VL+ + P ++ ++ G+VL
Sbjct: 33 ASAEDVVVVHGRRTAIGRSGRGGFKDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNVL 92
Query: 241 TAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMEN 420
G G R A + IP +VP + C SGL+AV A I G I +A G+E+
Sbjct: 93 QPGAGATMARIAQFLSDIPETVPLSAVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVES 152
Query: 421 MSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRL 600
MS A RL E L MGIT+ENVA+++ +SRE QD
Sbjct: 153 MSLADRGNPGNITSRLVEKEKARDCLIP----------MGITSENVAEQFGISREKQDTF 202
Query: 601 AALSQDRTEKAQKAGHFDKEIVPVFVSSR--KGVTE---VKTDEFPRPGSTLEAMSKLKP 765
A SQ + +AQ+ G F EIVPV + R KG + V DE RP +T+E ++KLKP
Sbjct: 203 ALASQQKAARAQRQGCFQAEIVPVTTTVRDDKGTEQSITVAQDEGIRPNTTMEGLAKLKP 262
Query: 766 YFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTG 945
F DG G+ T N+S ++DGAAA++L ++S+AE GL L + S++ V P IMG G
Sbjct: 263 AF-KDG-GSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIG 320
Query: 946 PIPAIKQAV 972
P AI A+
Sbjct: 321 PAYAIPVAL 329
>ref|NP_776761.1| trifunctional enzyme subunit beta, mitochondrial precursor [Bos
taurus].
Length = 475
Score = 114 bits (286), Expect = 1e-25
Identities = 93/300 (31%), Positives = 142/300 (47%), Gaps = 17/300 (5%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
+V+V RT + + HDL + +L R +V V +IFG V+
Sbjct: 55 IVVVDGVRTPFLLSGTSYKDLMPHDLARAALSGLLHRTSVPKDVVDYIIFGTVIQEVKTS 114
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
N R+A++GAG PA + M C S +A+ A I G +VVAGG+E MS P
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAGGVELMSDIPI 174
Query: 436 --------HLVHLRTGVRLGEAALTDSIL--------CDGLTDAFHNYHMGITAENVAKK 567
++ L L + S +++ + MG +A+ +A
Sbjct: 175 RHSRKMRKMMLDLNKAKTLAQRLSIISKFRLNFLSPELPAVSEFSTSETMGHSADRLAAA 234
Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
+ +SRE+QD A S +KAQ G ++VP V R VT+ D RP S+L+
Sbjct: 235 FAISREEQDEYALRSHSLAKKAQDEGLLS-DVVPFKVPGRDTVTQ---DNGIRP-SSLDQ 289
Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
M+KLKP F+ GTVT AN+S + DGA+AV++M + +A G P A++ + S +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAVLIMAEEKALAMGYKPKAYLRDFMYVSQDP 348
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,302,899
Number of extensions: 1181111
Number of successful extensions: 3763
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3745
Number of HSP's successfully gapped: 6
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007731
(976 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541180.2| PREDICTED: similar to Acetyl-CoA acetyltransfer... 539 e-153
Alignment gi|XP_546539.2| PREDICTED: similar to Acetyl-CoA acetyltransfer... 224 7e-59
Alignment gi|XP_534222.2| PREDICTED: similar to 3-ketoacyl-CoA thiolase, ... 153 3e-37
Alignment gi|XP_547690.2| PREDICTED: similar to acetyl-coenzyme A acyltra... 116 3e-26
Alignment gi|XP_859591.1| PREDICTED: similar to Trifunctional enzyme beta... 114 2e-25
Alignment gi|XP_859555.1| PREDICTED: similar to Trifunctional enzyme beta... 114 2e-25
Alignment gi|XP_849696.1| PREDICTED: similar to Trifunctional enzyme beta... 114 2e-25
Alignment gi|XP_865227.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 109 3e-24
Alignment gi|XP_865211.1| PREDICTED: similar to hydroxyacyl-Coenzyme A de... 109 3e-24
Alignment gi|XP_538166.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 109 3e-24
>ref|XP_541180.2| PREDICTED: similar to Acetyl-CoA acetyltransferase, cytosolic
(Cytosolic acetoacetyl-CoA thiolase) (Acetyl CoA
transferase-like protein) [Canis familiaris].
Length = 397
Score = 539 bits (1389), Expect = e-153
Identities = 268/306 (87%), Positives = 287/306 (93%)
Frame = +1
Query: 58 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
MSAGSDPVVIVSAART IGSFNGAL+TVP HDLGS+VI+EVL+RA V P+EVSEVIFGHV
Sbjct: 1 MSAGSDPVVIVSAARTPIGSFNGALATVPAHDLGSSVIKEVLRRAAVAPEEVSEVIFGHV 60
Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
L AGCGQNPVRQAS+GAGIPY+VPAWSCQM+CGSGLKAVCLAAQ+IG+GDS IVVAGGME
Sbjct: 61 LAAGCGQNPVRQASMGAGIPYAVPAWSCQMVCGSGLKAVCLAAQSIGIGDSSIVVAGGME 120
Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
+MSKAPHLVHLR GV++GE L DSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQD+
Sbjct: 121 SMSKAPHLVHLRAGVKIGEMPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDK 180
Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 777
A LSQ+RTE AQKAG+FDKEIVPVFVSSRKG+TEVKTDEFPR GS +EA+SKLKPYFLT
Sbjct: 181 CAVLSQNRTESAQKAGYFDKEIVPVFVSSRKGLTEVKTDEFPRHGSNIEAVSKLKPYFLT 240
Query: 778 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
DGTGTVTPANASGINDGAAAVVLMKKSEA NRGLTPLA IVSWSQ VEPSIMGTGPIPA
Sbjct: 241 DGTGTVTPANASGINDGAAAVVLMKKSEAANRGLTPLAQIVSWSQVGVEPSIMGTGPIPA 300
Query: 958 IKQAVA 975
IKQAVA
Sbjct: 301 IKQAVA 306
>ref|XP_546539.2| PREDICTED: similar to Acetyl-CoA acetyltransferase, mitochondrial
precursor (Acetoacetyl-CoA thiolase) (T2) [Canis
familiaris].
Length = 433
Score = 224 bits (572), Expect = 7e-59
Identities = 126/298 (42%), Positives = 182/298 (61%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
VVIVSAART IGSF G+LS++P LGS I+ V+++A + +EV E G+VL G GQ
Sbjct: 48 VVIVSAARTPIGSFLGSLSSLPATKLGSIAIQGVIEKAGIPKEEVKEAYMGNVLQGGEGQ 107
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 438
P RQA++GAG+P S P + +C SG+KA+ +A+Q++ G ++VAGGME+MS P+
Sbjct: 108 APTRQAALGAGLPISTPCTTVNKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPY 167
Query: 439 LVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 618
++ R G L D I+ DGLTD ++ HMG AEN AKK ++RE+QD A S
Sbjct: 168 VMS-RGATPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKMNITREEQDTYALSSYT 226
Query: 619 RTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVT 798
R++ A +AG F E++PV V+++ + T++ + KLK F + GTVT
Sbjct: 227 RSKAAWEAGRFGSEVIPVTVTTKGKPDVLVTEDEEYKRVDFSKVPKLKTVFQKE-NGTVT 285
Query: 799 PANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
ANAS +NDGAAAVVLM A + PLA + +++ A+VEP P A+ + +
Sbjct: 286 AANASTLNDGAAAVVLMTADAARRLKVKPLARVAAFADAAVEPIDFPVAPAYAVPKVL 343
>ref|XP_534222.2| PREDICTED: similar to 3-ketoacyl-CoA thiolase, peroxisomal
precursor (Beta-ketothiolase) (Acetyl-CoA
acyltransferase) (Peroxisomal 3-oxoacyl-CoA thiolase)
isoform 1 [Canis familiaris].
Length = 426
Score = 153 bits (386), Expect = 3e-37
Identities = 113/309 (36%), Positives = 157/309 (50%), Gaps = 6/309 (1%)
Frame = +1
Query: 64 AGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVL 240
A +D VV+V RT IG G +L S V+ VL+ + P ++ ++ G+VL
Sbjct: 35 ASADDVVVVHGRRTAIGRGGRGGFKDTTPDELLSAVMTAVLQDVRLSPAQLGDICVGNVL 94
Query: 241 TAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMEN 420
G G R A + IP +VP + C SGL+A+ A I G I +A G+E+
Sbjct: 95 QPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQALANIAGGIRNGSYDIGMACGVES 154
Query: 421 MSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRL 600
MS A RL E L MGIT+ENVA+++ +SRE QD
Sbjct: 155 MSLADRGNPGNITSRLVEKKKARDCLIP----------MGITSENVAERFGISREKQDTF 204
Query: 601 AALSQDRTEKAQKAGHFDKEIVPVF--VSSRKGVTEVKT---DEFPRPGSTLEAMSKLKP 765
A SQ + +AQ G F EIVPV V KG + T DE RP +T+E ++KLKP
Sbjct: 205 ALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGAERIITVAQDEGIRPNTTMEGLAKLKP 264
Query: 766 YFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTG 945
F G+ T N+S ++DGAAA++L ++S+AE GL L + S++ V P IMG G
Sbjct: 265 AFKQGGS--TTAGNSSQVSDGAAALLLARRSKAEELGLPVLGVLRSYAVVGVPPDIMGIG 322
Query: 946 PIPAIKQAV 972
P AI A+
Sbjct: 323 PAYAIPVAL 331
>ref|XP_547690.2| PREDICTED: similar to acetyl-coenzyme A acyltransferase 2 [Canis
familiaris].
Length = 382
Score = 116 bits (291), Expect = 3e-26
Identities = 87/299 (29%), Positives = 144/299 (48%), Gaps = 1/299 (0%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
V IV+A RT G++ G L DL R L V P+ + +I G+V+ +
Sbjct: 3 VFIVAAKRTPFGAYGGLLKDFTATDLTELAARAALSAGGVSPEAIDSIIVGNVMQSSSDA 62
Query: 259 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 435
+ R + G+P VPA+ +CGSG +++ Q I D+ GG + +P
Sbjct: 63 PYLARHVGLRVGVPKEVPAFVVNRLCGSGFQSIVSGCQRITGKDAEKKGCGGTGCLGLSP 122
Query: 436 HLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQ 615
H G + + +L+ + L + ++ T + + S +D R ++
Sbjct: 123 H------GQKNQKQSLSPTELQNLDYNSMSESQFRSTIIQLLVALEKSIKDS-RDFMTAE 175
Query: 616 DRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTV 795
R +A+ ++ + V + + V EV +E +P +TLE ++KL P F +GT V
Sbjct: 176 FRANQAEIKNQLNEMQSKLEVLTMR-VNEV--EERVKPRTTLEQLNKLPPLFKKEGT--V 230
Query: 796 TPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
T NASG++DGA AV++ + + TPLA IV + + +PSIMG GP+PAI A+
Sbjct: 231 TAGNASGVSDGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPSIMGIGPVPAINGAL 289
>ref|XP_859591.1| PREDICTED: similar to Trifunctional enzyme beta subunit,
mitochondrial precursor (TP-beta) isoform 3 [Canis
familiaris].
Length = 440
Score = 114 bits (284), Expect = 2e-25
Identities = 95/300 (31%), Positives = 141/300 (47%), Gaps = 17/300 (5%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
+V+V R + + HDL + +L R NV V +IFG V+
Sbjct: 55 IVVVDGVRIPFLQSGTSYKDLMPHDLARAALSGLLHRTNVPKDVVDYIIFGTVIQEVKTS 114
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVVVAGGVELMSDVPI 174
Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
++ L LG+ +L + L+ + MG +A+ +A
Sbjct: 175 RHSRKMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 234
Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
+ VSR DQD A S +KAQ G +IVP V + VT+ D RP S+LE
Sbjct: 235 FAVSRADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNGIRP-SSLEQ 289
Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G P A++ + S +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFVYVSQDP 348
>ref|XP_859555.1| PREDICTED: similar to Trifunctional enzyme beta subunit,
mitochondrial precursor (TP-beta) isoform 2 [Canis
familiaris].
Length = 420
Score = 114 bits (284), Expect = 2e-25
Identities = 95/300 (31%), Positives = 141/300 (47%), Gaps = 17/300 (5%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
+V+V R + + HDL + +L R NV V +IFG V+
Sbjct: 55 IVVVDGVRIPFLQSGTSYKDLMPHDLARAALSGLLHRTNVPKDVVDYIIFGTVIQEVKTS 114
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVVVAGGVELMSDVPI 174
Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
++ L LG+ +L + L+ + MG +A+ +A
Sbjct: 175 RHSRKMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 234
Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
+ VSR DQD A S +KAQ G +IVP V + VT+ D RP S+LE
Sbjct: 235 FAVSRADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNGIRP-SSLEQ 289
Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G P A++ + S +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFVYVSQDP 348
>ref|XP_849696.1| PREDICTED: similar to Trifunctional enzyme beta subunit,
mitochondrial precursor (TP-beta) isoform 1 [Canis
familiaris].
Length = 475
Score = 114 bits (284), Expect = 2e-25
Identities = 95/300 (31%), Positives = 141/300 (47%), Gaps = 17/300 (5%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
+V+V R + + HDL + +L R NV V +IFG V+
Sbjct: 55 IVVVDGVRIPFLQSGTSYKDLMPHDLARAALSGLLHRTNVPKDVVDYIIFGTVIQEVKTS 114
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVVVAGGVELMSDVPI 174
Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
++ L LG+ +L + L+ + MG +A+ +A
Sbjct: 175 RHSRKMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 234
Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
+ VSR DQD A S +KAQ G +IVP V + VT+ D RP S+LE
Sbjct: 235 FAVSRADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNGIRP-SSLEQ 289
Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G P A++ + S +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFVYVSQDP 348
>ref|XP_865227.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit B isoform
4 [Canis familiaris].
Length = 444
Score = 109 bits (273), Expect = 3e-24
Identities = 94/300 (31%), Positives = 139/300 (46%), Gaps = 17/300 (5%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
+V+V R + + HDL +L R NV V +IFG V+
Sbjct: 24 IVVVDGVRIPFLQSGTSYKDLMPHDLARAAFSGLLHRTNVSKDVVDYIIFGTVIQEVKTS 83
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 84 NVAREAALGAGFSDKTPAHTVTMACISANQAMITGVGLIASGQCDVVVAGGVELMSDVPI 143
Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
++ L LG+ +L + L+ + MG +A+ +A
Sbjct: 144 RHSRKIRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 203
Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
+ VSR DQD A S +KAQ G +IVP V + VT+ D RP S+LE
Sbjct: 204 FAVSRADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNDIRP-SSLEQ 258
Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G A++ + S +P
Sbjct: 259 MAKLKPAFIKP-YGTVTTANSSFLTDGASAMLIMAEEKALAMGYKLKAYLRDFVYVSQDP 317
>ref|XP_865211.1| PREDICTED: similar to hydroxyacyl-Coenzyme A
dehydrogenase/3-ketoacyl-Coenzyme A
thiolase/enoyl-Coenzyme A hydratase (trifunctional
protein), beta subunit isoform 3 [Canis familiaris].
Length = 403
Score = 109 bits (273), Expect = 3e-24
Identities = 94/300 (31%), Positives = 139/300 (46%), Gaps = 17/300 (5%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
+V+V R + + HDL +L R NV V +IFG V+
Sbjct: 38 IVVVDGVRIPFLQSGTSYKDLMPHDLARAAFSGLLHRTNVSKDVVDYIIFGTVIQEVKTS 97
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 98 NVAREAALGAGFSDKTPAHTVTMACISANQAMITGVGLIASGQCDVVVAGGVELMSDVPI 157
Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
++ L LG+ +L + L+ + MG +A+ +A
Sbjct: 158 RHSRKIRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 217
Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
+ VSR DQD A S +KAQ G +IVP V + VT+ D RP S+LE
Sbjct: 218 FAVSRADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNDIRP-SSLEQ 272
Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G A++ + S +P
Sbjct: 273 MAKLKPAFIKP-YGTVTTANSSFLTDGASAMLIMAEEKALAMGYKLKAYLRDFVYVSQDP 331
>ref|XP_538166.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit B isoform
1 [Canis familiaris].
Length = 458
Score = 109 bits (273), Expect = 3e-24
Identities = 94/300 (31%), Positives = 139/300 (46%), Gaps = 17/300 (5%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
+V+V R + + HDL +L R NV V +IFG V+
Sbjct: 38 IVVVDGVRIPFLQSGTSYKDLMPHDLARAAFSGLLHRTNVSKDVVDYIIFGTVIQEVKTS 97
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 98 NVAREAALGAGFSDKTPAHTVTMACISANQAMITGVGLIASGQCDVVVAGGVELMSDVPI 157
Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
++ L LG+ +L + L+ + MG +A+ +A
Sbjct: 158 RHSRKIRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 217
Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
+ VSR DQD A S +KAQ G +IVP V + VT+ D RP S+LE
Sbjct: 218 FAVSRADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNDIRP-SSLEQ 272
Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G A++ + S +P
Sbjct: 273 MAKLKPAFIKP-YGTVTTANSSFLTDGASAMLIMAEEKALAMGYKLKAYLRDFVYVSQDP 331
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,890,138
Number of extensions: 1205822
Number of successful extensions: 3995
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3975
Number of HSP's successfully gapped: 22
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007731
(976 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928380.1| PREDICTED: acetyl-CoA acetyltransferase, cyt... 599 e-172
Alignment gi|XP_003357324.1| PREDICTED: acetyl-CoA acetyltransferase, mit... 217 9e-57
Alignment gi|NP_001161110.1| 3-ketoacyl-CoA thiolase, mitochondrial [Sus ... 211 6e-55
Alignment gi|XP_003132151.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxi... 151 6e-37
Alignment gi|XP_003132161.2| PREDICTED: 3-ketoacyl-CoA thiolase, peroxiso... 142 3e-34
Alignment gi|NP_999131.1| long-chain 3-ketoacyl-CoA thiolase [Sus scrofa]. 107 8e-24
Alignment gi|XP_003132152.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxi... 100 2e-21
>ref|XP_001928380.1| PREDICTED: acetyl-CoA acetyltransferase, cytosolic [Sus scrofa].
Length = 397
Score = 599 bits (1545), Expect = e-172
Identities = 304/306 (99%), Positives = 304/306 (99%)
Frame = +1
Query: 58 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV
Sbjct: 1 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 60
Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME
Sbjct: 61 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 120
Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
NMSKAPHLV LRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR
Sbjct: 121 NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 180
Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 777
LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT
Sbjct: 181 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 240
Query: 778 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQA VEPSIMGTGPIPA
Sbjct: 241 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPA 300
Query: 958 IKQAVA 975
IKQAVA
Sbjct: 301 IKQAVA 306
>ref|XP_003357324.1| PREDICTED: acetyl-CoA acetyltransferase, mitochondrial [Sus
scrofa].
Length = 426
Score = 217 bits (552), Expect = 9e-57
Identities = 129/299 (43%), Positives = 180/299 (60%), Gaps = 1/299 (0%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
VVIVSA RT IGSF G+LS++P LGS I+ +++A + +EV EV G+VL G GQ
Sbjct: 41 VVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQ 100
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 438
P RQA +GAG+P S P + +C SG+KA+ +A+Q + G ++VAGGME+MS P+
Sbjct: 101 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY 160
Query: 439 LVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 618
++ R G L D I+ DGLTD ++ HMG AEN AKK + R++QD A S
Sbjct: 161 VMD-RGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYT 219
Query: 619 RTEKAQKAGHFDKEIVPVFVSSR-KGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTV 795
R++ A +AG F E++PV +S + K T VK DE + KLK F + GTV
Sbjct: 220 RSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE-EYKRVDFNKVPKLKTVFQKE-NGTV 277
Query: 796 TPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
T ANAS +NDGAAAVVLM A+ + PLA I +++ A+V+P P A+ + +
Sbjct: 278 TAANASTLNDGAAAVVLMTADAAKRLNVKPLARIAAFADAAVDPIDFPIAPAYAVPKVL 336
>ref|NP_001161110.1| 3-ketoacyl-CoA thiolase, mitochondrial [Sus scrofa].
Length = 397
Score = 211 bits (536), Expect = 6e-55
Identities = 120/300 (40%), Positives = 172/300 (57%), Gaps = 2/300 (0%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
V IV+A RT G+F G L DL R L NV P+ + VI G+V+ +
Sbjct: 7 VFIVAAKRTPFGAFGGLLKDFTATDLTEFAARAALSAGNVSPETIDSVIVGNVMQSSSDA 66
Query: 259 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 435
+ R + GIP PA + +CGSG +++ Q I D+++V+ GG E+MS+AP
Sbjct: 67 IYLARHVGLRVGIPKETPALTVNRLCGSGFQSIVNGCQEICAKDAKVVLCGGTESMSQAP 126
Query: 436 HLV-HLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALS 612
+ V ++R G +LG + L GLTD M ITAEN+A K ++SRE+ D+ A S
Sbjct: 127 YCVRNIRFGTKLGLDLKLEDSLWTGLTDQHIQIPMAITAENLAAKHKISREECDKYALQS 186
Query: 613 QDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 792
Q R + A AG+F+ E+ P+ V ++KG ++ DE RP +TLE +SKL P F + GT
Sbjct: 187 QQRWKAANDAGYFNNEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLSKLPPVFKKE--GT 244
Query: 793 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
VT NASGI+DGA AV++ + + TPLA IV + + +PSIMG GP+PAI A+
Sbjct: 245 VTAGNASGISDGAGAVIIASEDAVKKHNFTPLARIVGYFASGCDPSIMGIGPVPAITGAL 304
>ref|XP_003132151.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxisomal isoform 1 [Sus
scrofa].
Length = 426
Score = 151 bits (381), Expect = 6e-37
Identities = 110/310 (35%), Positives = 158/310 (50%), Gaps = 7/310 (2%)
Frame = +1
Query: 64 AGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVL 240
A ++ +V+V RT IG S G +L S V+ VL+ + P ++ ++ G+VL
Sbjct: 35 ASAEDIVVVHGRRTAIGRSGRGGFKDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNVL 94
Query: 241 TAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMEN 420
G G R A + IP +VP + C SGL+AV A I G I +A G+E+
Sbjct: 95 QPGAGAVMARIAQFLSDIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVES 154
Query: 421 MSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRL 600
M+ RL E L MGIT+ENVAK++ +SRE QD
Sbjct: 155 MTLGDRGNPGNISSRLVEKEKARDCLIP----------MGITSENVAKRFGISREKQDTF 204
Query: 601 AALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKLK 762
A SQ + +AQ G F EIVPV + + K +T V DE RP +T+E ++KLK
Sbjct: 205 ALASQQKAARAQSKGCFQAEIVPVTTTVYDDKGNEKSIT-VAQDEGIRPNTTMEGLAKLK 263
Query: 763 PYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGT 942
P F G+ T N+S ++DGAAA++L ++S+A+ GL L + S++ V P IMG
Sbjct: 264 PAFKQG--GSTTAGNSSQVSDGAAALLLARRSKAKELGLPILGILRSYAVVGVPPDIMGI 321
Query: 943 GPIPAIKQAV 972
GP AI A+
Sbjct: 322 GPAYAIPVAL 331
>ref|XP_003132161.2| PREDICTED: 3-ketoacyl-CoA thiolase, peroxisomal-like [Sus scrofa].
Length = 390
Score = 142 bits (358), Expect = 3e-34
Identities = 111/322 (34%), Positives = 159/322 (49%), Gaps = 6/322 (1%)
Frame = +1
Query: 25 TSSGGARLCRRMSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDP 204
T+ G RL R P + SAA + +L +L S V+ VL+ + P
Sbjct: 13 TALSGVRLGER----GFPGIPSSAASGGLSRPRFSLQDTTPDELLSAVMTAVLQDVKLSP 68
Query: 205 KEVSEVIFGHVLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVG 384
++ ++ G+VL G G R A + IP +VP + C SGL+AV A I G
Sbjct: 69 AQLGDICVGNVLQPGAGAVMARIAQFLSDIPETVPLSTVNRQCSSGLQAVANIAGGIRNG 128
Query: 385 DSRIVVAGGMENMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAK 564
I +A G+E+M+ RL E L MGIT+ENVAK
Sbjct: 129 SYDIGMACGVESMTLGDRGNPGNISSRLVEKEKARDCLIP----------MGITSENVAK 178
Query: 565 KWQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPR 726
++ +SRE QD A SQ + +AQ G F EIVPV + + K +T V DE R
Sbjct: 179 RFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVYDDKGNEKSIT-VAQDEGIR 237
Query: 727 PGSTLEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSW 906
P +T+E ++KLKP F G+ T N+S ++DGAAA++L ++S+A+ GL L + S+
Sbjct: 238 PNTTMEGLAKLKPAFKQG--GSTTAGNSSQVSDGAAALLLARRSKAKELGLPILGILRSY 295
Query: 907 SQASVEPSIMGTGPIPAIKQAV 972
+ V P IMG GP AI A+
Sbjct: 296 AVVGVPPDIMGIGPAYAIPVAL 317
>ref|NP_999131.1| long-chain 3-ketoacyl-CoA thiolase [Sus scrofa].
Length = 442
Score = 107 bits (268), Expect = 8e-24
Identities = 90/300 (30%), Positives = 138/300 (46%), Gaps = 17/300 (5%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
+V+V R + + HDL + +L R +V V ++FG V+
Sbjct: 22 IVVVDGVRIPFLQSGTSYKELMPHDLARAALLGLLHRTSVPKDVVDYLVFGTVIQEVKTS 81
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
N R+A++GAG PA + M C S +A+ I G +VVAGG+E MS P
Sbjct: 82 NVAREAALGAGFSDKTPAHTVTMACISSNQAMTTGVSLIASGQFDVVVAGGVELMSDIPI 141
Query: 436 --------HLVHLRTGVRLGEAALTDSIL--------CDGLTDAFHNYHMGITAENVAKK 567
++ L LG+ S + + + MG +A+ +A
Sbjct: 142 RHSRKMRKMMLDLNKAKTLGQRLSLISKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 201
Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
+ VSR +QD A S +KAQ G ++VP V + V + D RP S+LE
Sbjct: 202 FAVSRSEQDEYALRSHSLAKKAQDEGLLS-DVVPFKVPGKDTVLK---DNGIRP-SSLEQ 256
Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
M+KLKP F+ GTVT AN+S + DGA+AV++M + +A G P A++ + S +P
Sbjct: 257 MAKLKPAFIKP-YGTVTAANSSFLTDGASAVLIMAEEKALAMGYKPKAYLRDFIYVSQDP 315
>ref|XP_003132152.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxisomal isoform 2 [Sus
scrofa].
Length = 333
Score = 100 bits (248), Expect = 2e-21
Identities = 80/250 (32%), Positives = 114/250 (45%), Gaps = 7/250 (2%)
Frame = +1
Query: 64 AGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVL 240
A ++ +V+V RT IG S G +L S V+ VL+ + P ++ ++ G+VL
Sbjct: 35 ASAEDIVVVHGRRTAIGRSGRGGFKDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNVL 94
Query: 241 TAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMEN 420
G G R A + IP +VP + C SGL+AV +AGG+ N
Sbjct: 95 QPGAGAVMARIAQFLSDIPETVPLSTVNRQCSSGLQAVAN-------------IAGGIRN 141
Query: 421 MSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRL 600
S +G A GIT+ENVAK++ +SRE QD
Sbjct: 142 GS-----------YDIGMAC-------------------GITSENVAKRFGISREKQDTF 171
Query: 601 AALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKLK 762
A SQ + +AQ G F EIVPV + + K +T V DE RP +T+E ++KLK
Sbjct: 172 ALASQQKAARAQSKGCFQAEIVPVTTTVYDDKGNEKSIT-VAQDEGIRPNTTMEGLAKLK 230
Query: 763 PYFLTDGTGT 792
P F G+ T
Sbjct: 231 PAFKQGGSTT 240
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,977,517
Number of extensions: 758586
Number of successful extensions: 2357
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2344
Number of HSP's successfully gapped: 9
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007731
(976 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033364.2| acetyl-CoA acetyltransferase, cytosolic [Mus mu... 529 e-150
Alignment gi|NP_694791.2| acetyl-Coenzyme A acetyltransferase 3 [Mus musc... 520 e-148
Alignment gi|NP_659033.1| acetyl-CoA acetyltransferase, mitochondrial pre... 216 3e-56
Alignment gi|NP_803421.1| 3-ketoacyl-CoA thiolase, mitochondrial [Mus mus... 200 1e-51
Alignment gi|NP_666342.1| 3-ketoacyl-CoA thiolase B, peroxisomal precurso... 156 2e-38
Alignment gi|NP_570934.1| 3-ketoacyl-CoA thiolase A, peroxisomal precurso... 153 2e-37
Alignment gi|NP_663533.1| trifunctional enzyme subunit beta, mitochondria... 118 6e-27
Alignment gi|XP_003086283.1| PREDICTED: trifunctional enzyme subunit beta... 81 1e-15
>ref|NP_033364.2| acetyl-CoA acetyltransferase, cytosolic [Mus musculus].
Length = 397
Score = 529 bits (1362), Expect = e-150
Identities = 264/306 (86%), Positives = 281/306 (91%)
Frame = +1
Query: 58 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
M+AGSDPVVIVSAART IGSFNGALSTVPVH++G+TVI+EVL+RA V P+EVSEVIFGHV
Sbjct: 1 MNAGSDPVVIVSAARTAIGSFNGALSTVPVHEMGTTVIKEVLQRAKVAPEEVSEVIFGHV 60
Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
LTAGCGQNP RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQ+I +GDS IVVAGGME
Sbjct: 61 LTAGCGQNPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGME 120
Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
NMSKAPHL HLRTGVR+GE L DSILCDGLTDAFHNYHMGITAENVAKKWQVSRE QD+
Sbjct: 121 NMSKAPHLTHLRTGVRMGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDK 180
Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 777
+A LSQ+R E AQKAGHFDKEIVPV VSSRKG+TEVK DEFPR GS LEAM KLKPYFLT
Sbjct: 181 VAVLSQNRAEHAQKAGHFDKEIVPVLVSSRKGLTEVKIDEFPRHGSNLEAMGKLKPYFLT 240
Query: 778 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
DGTGTVTPANASG+NDGAAAVVLMKK+EAE R L PLA IVSWSQA VEPS+MG GPIPA
Sbjct: 241 DGTGTVTPANASGMNDGAAAVVLMKKTEAERRMLKPLARIVSWSQAGVEPSVMGVGPIPA 300
Query: 958 IKQAVA 975
IKQAVA
Sbjct: 301 IKQAVA 306
>ref|NP_694791.2| acetyl-Coenzyme A acetyltransferase 3 [Mus musculus].
Length = 397
Score = 520 bits (1338), Expect = e-148
Identities = 260/306 (84%), Positives = 278/306 (90%)
Frame = +1
Query: 58 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
M+ SDPVVIVSAART IGSFNGALSTVPVH++G+TVI+EVL+RA V P+EVSEVIFGHV
Sbjct: 1 MNTRSDPVVIVSAARTAIGSFNGALSTVPVHEMGTTVIKEVLQRAKVAPEEVSEVIFGHV 60
Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
LTAGCGQNP RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQ+I +GDS IVVAGGME
Sbjct: 61 LTAGCGQNPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGME 120
Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
NMSKAPHL HLRTGVR+GE L DSILCDGLTDAFHNYHMGITAENVAKKWQVSRE QD+
Sbjct: 121 NMSKAPHLTHLRTGVRVGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDK 180
Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 777
+A LSQ+R E AQKAGHFDKEIVPV VSSRKG+TEVK DEFPR GS LEAM KLKPYFLT
Sbjct: 181 VAVLSQNRAEHAQKAGHFDKEIVPVLVSSRKGLTEVKIDEFPRHGSNLEAMGKLKPYFLT 240
Query: 778 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
DGTGTVT ANA+G+NDGAAAVVLMKK+EAE R L PLA IVSWSQA VEPS+MG GPIPA
Sbjct: 241 DGTGTVTTANATGMNDGAAAVVLMKKTEAERRMLKPLARIVSWSQAGVEPSVMGVGPIPA 300
Query: 958 IKQAVA 975
IKQAVA
Sbjct: 301 IKQAVA 306
>ref|NP_659033.1| acetyl-CoA acetyltransferase, mitochondrial precursor [Mus
musculus].
Length = 424
Score = 216 bits (549), Expect = 3e-56
Identities = 126/314 (40%), Positives = 185/314 (58%), Gaps = 6/314 (1%)
Frame = +1
Query: 49 CRRMSAGSDP----VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVS 216
C S S P VVIVSA RT IGSF G+L++ P LG+ I+ +++A + +EV
Sbjct: 25 CLERSYASKPTLNEVVIVSAIRTPIGSFLGSLASQPATKLGTAAIQGAIEKAGIPKEEVK 84
Query: 217 EVIFGHVLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRI 396
EV G+V+ G GQ P RQA++GAG+P S P + +C SG+KA+ +A+Q++ G +
Sbjct: 85 EVYMGNVIQGGEGQAPTRQATLGAGLPISTPCTTVNKVCASGMKAIMMASQSLMCGHQDV 144
Query: 397 VVAGGMENMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQV 576
+VAGGME+MS P+++ R G L D I+ DGLTD ++ HMG AEN AKK +
Sbjct: 145 MVAGGMESMSNVPYVMS-RGATPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKMNI 203
Query: 577 SREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVS--SRKGVTEVKTDEFPRPGSTLEAM 750
SR++QD A S R+++A AG F EI P+ +S + V + +E+ R +
Sbjct: 204 SRQEQDTYALSSYTRSKEAWDAGKFASEITPITISVKGKPDVVVKEDEEYKR--VDFSKV 261
Query: 751 SKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPS 930
KLK F + GT+T ANAS +NDGAAA+VLM A+ + PLA I +++ A+V+P
Sbjct: 262 PKLKTVFQKE-NGTITAANASTLNDGAAALVLMTAEAAQRLNVKPLARIAAFADAAVDPI 320
Query: 931 IMGTGPIPAIKQAV 972
P A+ + +
Sbjct: 321 DFPLAPAYAVPKVL 334
>ref|NP_803421.1| 3-ketoacyl-CoA thiolase, mitochondrial [Mus musculus].
Length = 397
Score = 200 bits (509), Expect = 1e-51
Identities = 112/300 (37%), Positives = 169/300 (56%), Gaps = 2/300 (0%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
V IV+A RT G++ G L DL R L V P+ + VI G+V+ +
Sbjct: 7 VFIVAAKRTPFGAYGGLLKDFSATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDA 66
Query: 259 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 435
+ R + G+P A + +CGSG +++ Q I D+ +V+ GG E+MS++P
Sbjct: 67 AYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMSQSP 126
Query: 436 HLV-HLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALS 612
+ V ++R G + G + L GLTD MG+TAEN+A K+ +SRED DR A S
Sbjct: 127 YCVRNVRFGTKFGLDLKLEDTLWAGLTDQHVKLPMGMTAENLAAKYNISREDCDRYALQS 186
Query: 613 QDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 792
Q R + A +AG+F++E+ P+ V ++KG ++ DE RP +TLE + KL F D GT
Sbjct: 187 QQRWKAANEAGYFNEEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLQKLPSVFKKD--GT 244
Query: 793 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
VT NASG++DGA AV++ + + TPLA +V + + +P+IMG GP+PAI A+
Sbjct: 245 VTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARVVGYFVSGCDPTIMGIGPVPAINGAL 304
>ref|NP_666342.1| 3-ketoacyl-CoA thiolase B, peroxisomal precursor [Mus musculus].
Length = 424
Score = 156 bits (395), Expect = 2e-38
Identities = 113/312 (36%), Positives = 163/312 (52%), Gaps = 7/312 (2%)
Frame = +1
Query: 58 MSAGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGH 234
+ A + VV+V RT IG + G +L S V+ VL+ + P+++ ++ G+
Sbjct: 31 LQASASDVVVVHGRRTPIGRASRGCFKDTTPDELLSAVLTAVLQDVKLKPEQLGDISVGN 90
Query: 235 VLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGM 414
VL G G R A +GIP +VP + C SGL+AV A I G I +A G+
Sbjct: 91 VLQPGAGAIMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGV 150
Query: 415 ENMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQD 594
E+M+ + H RL E L MGIT+ENVA+++ VSR+ QD
Sbjct: 151 ESMTLSQRGNHGNISSRLLENEKARDCLIP----------MGITSENVAERFGVSRQKQD 200
Query: 595 RLAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSK 756
A SQ + AQ G F EIVPV + +K +T V DE RP +T++ ++K
Sbjct: 201 AFALASQQKAASAQSRGCFHAEIVPVTTTVLNDKGDKKTIT-VSQDEGVRPSTTMQGLAK 259
Query: 757 LKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIM 936
LKP F DG G+ T N+S ++DGAAAV+L ++S+AE GL L + S++ V P +M
Sbjct: 260 LKPAF-KDG-GSTTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVM 317
Query: 937 GTGPIPAIKQAV 972
G GP AI A+
Sbjct: 318 GIGPAYAIPAAL 329
>ref|NP_570934.1| 3-ketoacyl-CoA thiolase A, peroxisomal precursor [Mus musculus].
Length = 424
Score = 153 bits (387), Expect = 2e-37
Identities = 115/311 (36%), Positives = 166/311 (53%), Gaps = 8/311 (2%)
Frame = +1
Query: 64 AGSDPVVIVSAARTVIG--SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
A + VV+V RT IG S G +T P +L S V+ VL+ + P+++ ++ G+V
Sbjct: 33 ASASDVVVVHGRRTPIGRASRGGFKNTTP-DELLSAVLTAVLQDVRLKPEQLGDISVGNV 91
Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
L G G R A +GIP +VP + C SGL+AV A I G I +A G+E
Sbjct: 92 LEPGAGAVMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVE 151
Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
+MS L + + L D LT MG+T+ENVA+++ +SR+ QD
Sbjct: 152 SMS----LSGMGNPGNISSRLLESEKARDCLTP------MGMTSENVAERFGISRQKQDD 201
Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKL 759
A SQ + AQ G F EIVPV + +K +T V DE RP +T++ ++KL
Sbjct: 202 FALASQQKAASAQSRGCFRAEIVPVTTTVLDDKGDKKTIT-VSQDEGVRPSTTMQGLAKL 260
Query: 760 KPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMG 939
KP F DG G+ T N+S ++DGAAAV+L ++S+AE GL L + S++ V P +MG
Sbjct: 261 KPAF-KDG-GSTTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVMG 318
Query: 940 TGPIPAIKQAV 972
GP AI A+
Sbjct: 319 IGPAYAIPAAL 329
>ref|NP_663533.1| trifunctional enzyme subunit beta, mitochondrial precursor [Mus
musculus].
Length = 475
Score = 118 bits (296), Expect = 6e-27
Identities = 96/300 (32%), Positives = 142/300 (47%), Gaps = 17/300 (5%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
+V+V R + + HDL + +L R N+ V +IFG V+
Sbjct: 55 IVVVEGVRIPFLLSGTSYKDLMPHDLARAALSGLLHRTNIPKDVVDYIIFGTVIQEVKTS 114
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
N R+A++GAG PA + M C S +A+ A I G +VVAGG+E MS P
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAGGVELMSDVPI 174
Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
++ L LG+ +L + L+ N MG +A+ +A
Sbjct: 175 RHSRNMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTNETMGHSADRLAAA 234
Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
+ VSR +QD A S +KAQ GH +IVP V + VT+ D RP S+LE
Sbjct: 235 FAVSRMEQDEYALRSHSLAKKAQDEGHLS-DIVPFKVPGKDTVTK---DNGIRP-SSLEQ 289
Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
M+KLKP F+ GTVT AN+S + DGA+A+++M + A G P A++ + S +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMSEDRALAMGYKPKAYLRDFIYVSQDP 348
>ref|XP_003086283.1| PREDICTED: trifunctional enzyme subunit beta, mitochondrial-like
[Mus musculus].
Length = 330
Score = 80.9 bits (198), Expect = 1e-15
Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 17/206 (8%)
Frame = +1
Query: 361 AAQAIGVGDSRIVVAGGMENMSKAP---------HLVHLRTGVRLGEA-ALTDSILCDGL 510
A I G +VVAGG+E MS P ++ L LG+ +L + L
Sbjct: 4 AVGLIASGQCDVVVAGGVELMSDVPIRHSRNMRKMMLDLNKAKTLGQRLSLLSKFRLNFL 63
Query: 511 TDAFH-------NYHMGITAENVAKKWQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVP 669
+ N MG +A+ +A + VSR +QD A S +KAQ GH +IVP
Sbjct: 64 SPELPAVAEFSTNETMGHSADRLAAAFAVSRMEQDEYALHSHSLAKKAQDEGHLS-DIVP 122
Query: 670 VFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLM 849
V + VT+ D RP S+LE M+KLKP F+ GTVT AN+S + DGA+A+++M
Sbjct: 123 FKVPGKDTVTK---DNGIRP-SSLEQMAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIM 177
Query: 850 KKSEAENRGLTPLAHIVSWSQASVEP 927
+ A G P A++ + S +P
Sbjct: 178 SEDRALAMGYKPKAYLRDFIYVSQDP 203
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,886,380
Number of extensions: 1004290
Number of successful extensions: 3203
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3186
Number of HSP's successfully gapped: 8
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007731
(976 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005882.2| acetyl-CoA acetyltransferase, cytosolic [Homo s... 532 e-151
Alignment gi|NP_000010.1| acetyl-CoA acetyltransferase, mitochondrial pre... 219 3e-57
Alignment gi|NP_006102.2| 3-ketoacyl-CoA thiolase, mitochondrial [Homo sa... 201 6e-52
Alignment gi|NP_001598.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform a ... 155 7e-38
Alignment gi|NP_000174.1| trifunctional enzyme subunit beta, mitochondria... 111 1e-24
Alignment gi|NP_001123882.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform... 100 3e-21
>ref|NP_005882.2| acetyl-CoA acetyltransferase, cytosolic [Homo sapiens].
Length = 397
Score = 532 bits (1371), Expect = e-151
Identities = 265/305 (86%), Positives = 283/305 (92%)
Frame = +1
Query: 58 MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
M+AGSDPVVIVSAART+IGSFNGAL+ VPV DLGSTVI+EVLKRA V P++VSEVIFGHV
Sbjct: 1 MNAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHV 60
Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
L AGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLA Q+IG+GDS IVVAGGME
Sbjct: 61 LAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGME 120
Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
NMSKAPHL +LRTGV++GE LTDSILCDGLTDAFHN HMGITAENVAKKWQVSREDQD+
Sbjct: 121 NMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDK 180
Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 777
+A LSQ+RTE AQKAGHFDKEIVPV VS+RKG+ EVKTDEFPR GS +EAMSKLKPYFLT
Sbjct: 181 VAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLT 240
Query: 778 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
DGTGTVTPANASGINDGAAAVVLMKKSEA+ RGLTPLA IVSWSQ VEPSIMG GPIPA
Sbjct: 241 DGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPA 300
Query: 958 IKQAV 972
IKQAV
Sbjct: 301 IKQAV 305
>ref|NP_000010.1| acetyl-CoA acetyltransferase, mitochondrial precursor [Homo
sapiens].
Length = 427
Score = 219 bits (558), Expect = 3e-57
Identities = 125/293 (42%), Positives = 177/293 (60%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
VVIVSA RT IGSF G+LS +P LGS I+ +++A + +EV E G+VL G GQ
Sbjct: 42 VVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQ 101
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 438
P RQA +GAG+P S P + +C SG+KA+ +A+Q++ G ++VAGGME+MS P+
Sbjct: 102 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPY 161
Query: 439 LVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 618
+++ R G L D I+ DGLTD ++ HMG AEN AKK ++R +QD A S
Sbjct: 162 VMN-RGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSYT 220
Query: 619 RTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVT 798
R++ A +AG F E++PV V+ + V ++ + KLK F + GTVT
Sbjct: 221 RSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKE-NGTVT 279
Query: 799 PANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
ANAS +NDGAAA+VLM A+ +TPLA IV+++ A+VEP P+ A
Sbjct: 280 AANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYA 332
>ref|NP_006102.2| 3-ketoacyl-CoA thiolase, mitochondrial [Homo sapiens].
Length = 397
Score = 201 bits (512), Expect = 6e-52
Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 2/300 (0%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
V +V+A RT G++ G L DL + L V P+ V VI G+VL +
Sbjct: 7 VFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDA 66
Query: 259 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 435
+ R + GIP PA + +CGSG +++ Q I V ++ +V+ GG E+MS+AP
Sbjct: 67 IYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQAP 126
Query: 436 HLV-HLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALS 612
+ V ++R G +LG + L LTD M +TAEN+A K ++SRE+ D+ A S
Sbjct: 127 YCVRNVRFGTKLGSDIKLEDSLWVSLTDQHVQLPMAMTAENLAVKHKISREECDKYALQS 186
Query: 613 QDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 792
Q R + A AG+F+ E+ P+ V ++KG ++ DE RP +TLE + KL P F D GT
Sbjct: 187 QQRWKAANDAGYFNDEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLQKLPPVFKKD--GT 244
Query: 793 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
VT NASG+ DGA AV++ + + TPLA IV + + +PSIMG GP+PAI A+
Sbjct: 245 VTAGNASGVADGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPSIMGIGPVPAISGAL 304
>ref|NP_001598.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform a [Homo sapiens].
Length = 424
Score = 155 bits (391), Expect = 7e-38
Identities = 115/311 (36%), Positives = 162/311 (52%), Gaps = 8/311 (2%)
Frame = +1
Query: 64 AGSDPVVIVSAARTVI--GSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
A + VV+V RT I G T P +L S V+ VLK N+ P+++ ++ G+V
Sbjct: 33 ASAADVVVVHGRRTAICRAGRGGFKDTTP-DELLSAVMTAVLKDVNLRPEQLGDICVGNV 91
Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
L G G R A + IP +VP + C SGL+AV A I G I +A G+E
Sbjct: 92 LQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVE 151
Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
+MS A RL E L MGIT+ENVA+++ +SRE QD
Sbjct: 152 SMSLADRGNPGNITSRLMEKEKARDCLIP----------MGITSENVAERFGISREKQDT 201
Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKL 759
A SQ + +AQ G F EIVPV + +++ +T V DE RP +T+E ++KL
Sbjct: 202 FALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSIT-VTQDEGIRPSTTMEGLAKL 260
Query: 760 KPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMG 939
KP F D G+ T N+S ++DGAAA++L ++S+AE GL L + S++ V P IMG
Sbjct: 261 KPAFKKD--GSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMG 318
Query: 940 TGPIPAIKQAV 972
GP AI A+
Sbjct: 319 IGPAYAIPVAL 329
>ref|NP_000174.1| trifunctional enzyme subunit beta, mitochondrial precursor [Homo
sapiens].
Length = 474
Score = 111 bits (277), Expect = 1e-24
Identities = 91/300 (30%), Positives = 142/300 (47%), Gaps = 17/300 (5%)
Frame = +1
Query: 79 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
VV+V RT + + HDL + +L R +V + V +IFG V+
Sbjct: 54 VVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTS 113
Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 438
N R+A++GAG PA + M C S +A+ I G ++VAGG+E MS P
Sbjct: 114 NVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPI 173
Query: 439 ---------LVHLRTGVRLGEAALTDSIL--------CDGLTDAFHNYHMGITAENVAKK 567
++ L +G+ S +++ + MG +A+ +A
Sbjct: 174 RHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAA 233
Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
+ VSR +QD A S +KAQ G ++VP V + VT+ D RP S+LE
Sbjct: 234 FAVSRLEQDEYALRSHSLAKKAQDEGLLS-DVVPFKVPGKDTVTK---DNGIRP-SSLEQ 288
Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
M+KLKP F+ GTVT AN+S + DGA+A+++M + +A G P A++ + S +P
Sbjct: 289 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDP 347
>ref|NP_001123882.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform b [Homo sapiens].
Length = 331
Score = 100 bits (248), Expect = 3e-21
Identities = 91/294 (30%), Positives = 133/294 (45%), Gaps = 14/294 (4%)
Frame = +1
Query: 64 AGSDPVVIVSAARTVI--GSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
A + VV+V RT I G T P +L S V+ VLK N+ P+++ ++ G+V
Sbjct: 33 ASAADVVVVHGRRTAICRAGRGGFKDTTP-DELLSAVMTAVLKDVNLRPEQLGDICVGNV 91
Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
L G G R A + IP +VP + C SGL+AV +AGG+
Sbjct: 92 LQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVAS-------------IAGGIR 138
Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
N S +G A GIT+ENVA+++ +SRE QD
Sbjct: 139 NGS-----------YDIGMAC-------------------GITSENVAERFGISREKQDT 168
Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKL 759
A SQ + +AQ G F EIVPV + +++ +T V DE RP +T+E ++KL
Sbjct: 169 FALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSIT-VTQDEGIRPSTTMEGLAKL 227
Query: 760 KPYFLTDGTG----TVTPANASGINDGAA--AVVLMKKSEAENRGLTPLAHIVS 903
KP F DG+ TV+ + IN+ A A ++K + PL V+
Sbjct: 228 KPAFKKDGSTTAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVA 281
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,177,510
Number of extensions: 1194978
Number of successful extensions: 3777
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3763
Number of HSP's successfully gapped: 8
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007731
(976 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 363 1e-97
>Sscrofa_Chr01
|| Length = 315321322
Score = 363 bits (183), Expect = 1e-97
Identities = 186/187 (99%)
Strand = Plus / Minus
Query: 244 gcaggttgtgggcagaatcccgttcgacaagccagtgtgggggcaggaatcccctactct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9407407 gcaggttgtgggcagaatcccgttcgacaagccagtgtgggggcaggaatcccctactct 9407348
Query: 304 gttccggcctggagctgccagatgatctgtgggtcaggcctgaaggccgtgtgcctcgct 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9407347 gttccggcctggagctgccagatgatctgtgggtcaggcctgaaggccgtgtgcctcgcc 9407288
Query: 364 gcccaggccataggggtgggagactcccgcattgtggtcgcaggaggcatggaaaacatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9407287 gcccaggccataggggtgggagactcccgcattgtggtcgcaggaggcatggaaaacatg 9407228
Query: 424 agcaagg 430
|||||||
Sbjct: 9407227 agcaagg 9407221
Score = 301 bits (152), Expect = 4e-79
Identities = 158/160 (98%)
Strand = Plus / Minus
Query: 812 caggaattaatgatggtgctgctgctgtggttcttatgaagaagtcggaggctgagaacc 871
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9402002 caggaattaatgatggtgctgctgctgtggttcttatgaagaagtcagaggctgagaacc 9401943
Query: 872 gcgggcttactcctttagcacacatagtttcctggtcacaagcaagcgtggagccttcca 931
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9401942 gcgggcttactcctttagcacacatagtttcctggtcacaagcaggcgtggagccttcca 9401883
Query: 932 tcatgggaacaggcccaatcccggcaataaagcaagctgt 971
||||||||||||||||||||||||||||||||||||||||
Sbjct: 9401882 tcatgggaacaggcccaatcccggcaataaagcaagctgt 9401843
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 543 cacagctgaaaacgtagccaaaaaatggcaagtgagtagagaagatcaggacaggcttgc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9404179 cacagctgaaaacgtagccaaaaaatggcaagtgagtagagaagatcaggacaggcttgc 9404120
Query: 603 cgctctgtcccaggacaggacggagaaggcacagaaagctggccattttgacaaagagat 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9404119 cgctctgtcccaggacaggacggagaaggcacagaaagctggccattttgacaaagagat 9404060
Query: 663 tgtgccggtttttgtatcttctagaaaaggtg 694
||||||||||||||||||||||||||||||||
Sbjct: 9404059 tgtgccggtttttgtatcttctagaaaaggtg 9404028
Score = 278 bits (140), Expect = 5e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 110 taggctccttcaatggtgctttgtccaccgttcctgtccatgacctgggctcgactgtca 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9410947 taggctccttcaatggtgctttgtccaccgttcctgtccatgacctgggctcgactgtca 9410888
Query: 170 tcagagaggtcctgaagagggccaatgtggatcccaaggaggtatcagaggtcatatttg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9410887 tcagagaggtcctgaagagggccaatgtggatcccaaggaggtatcagaggtcatatttg 9410828
Query: 230 gacacgttttgacagcaggt 249
||||||||||||||||||||
Sbjct: 9410827 gacacgttttgacagcaggt 9410808
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 690 aggtgtcaccgaagtgaaaaccgatgagtttcctcgccccgggagcaccctagaagccat 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9402780 aggtgtcaccgaagtgaaaaccgatgagtttcctcgccccgggagcaccctagaagccat 9402721
Query: 750 gtctaagctaaagccttactttctcacagatgggacaggaacagtcaccccagctaatgc 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9402720 gtctaagctaaagccttactttctcacagatgggacaggaacagtcaccccagctaatgc 9402661
Query: 810 ctcagg 815
||||||
Sbjct: 9402660 ctcagg 9402655
Score = 230 bits (116), Expect = 1e-57
Identities = 119/120 (99%)
Strand = Plus / Minus
Query: 428 aggcccctcacttggttcacctgaggaccggcgtcaggctcggggaggccgcgctcactg 487
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9405281 aggcccctcacttggttcgcctgaggaccggcgtcaggctcggggaggccgcgctcactg 9405222
Query: 488 acagcatcctctgtgatgggctgacagatgcgtttcacaactaccacatgggcatcacag 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9405221 acagcatcctctgtgatgggctgacagatgcgtttcacaactaccacatgggcatcacag 9405162
Score = 198 bits (100), Expect = 4e-48
Identities = 109/112 (97%)
Strand = Plus / Minus
Query: 2 ctcgctcgcggcgtggagtccacacgagctccggaggagctcgattgtgcagaaggatga 61
||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct: 9411769 ctcgctcgcggcgtggagtccacaccagctcgggaggagctcgactgtgcagaaggatga 9411710
Query: 62 gtgcaggctcggaccccgtggtcatcgtctcggcggcgcggaccgtcatagg 113
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9411709 gtgcaggctcggaccccgtggtcatcgtctcggcggcgcggaccgtcatagg 9411658
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,211,229
Number of extensions: 118
Number of successful extensions: 118
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 7
Length of query: 976
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 955
Effective length of database: 2,808,413,156
Effective search space: 2682034563980
Effective search space used: 2682034563980
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)