Animal-Genome cDNA 20110601C-007731


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007731
         (976 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069017.1| acetyl-CoA acetyltransferase, cytosolic [Bos...   540   e-153
Alignment   gi|NP_001039540.1| acetyl-CoA acetyltransferase, mitochondrial ...   218   6e-57
Alignment   gi|NP_001030419.1| 3-ketoacyl-CoA thiolase, mitochondrial [Bos ...   215   4e-56
Alignment   gi|NP_001029491.1| 3-ketoacyl-CoA thiolase, peroxisomal [Bos ta...   159   5e-39
Alignment   gi|NP_776761.1| trifunctional enzyme subunit beta, mitochondria...   114   1e-25

>ref|NP_001069017.1| acetyl-CoA acetyltransferase, cytosolic [Bos taurus].
          Length = 397

 Score =  540 bits (1390), Expect = e-153
 Identities = 271/306 (88%), Positives = 287/306 (93%)
 Frame = +1

Query: 58  MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
           MSA SDPVVIVSAART+IGSFNGALSTVPVHDLGSTVIREVLKRA V P+EVSEVIFGHV
Sbjct: 1   MSADSDPVVIVSAARTIIGSFNGALSTVPVHDLGSTVIREVLKRAAVAPEEVSEVIFGHV 60

Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
           L AGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQ+I +GDS IVVAGGME
Sbjct: 61  LAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIRIGDSSIVVAGGME 120

Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
           NMSKAPHLVHLRTGV++GE  L DSILCDGLTDAFHNYHMGITAENVA++WQVSREDQD+
Sbjct: 121 NMSKAPHLVHLRTGVKIGETPLADSILCDGLTDAFHNYHMGITAENVARQWQVSREDQDK 180

Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 777
           +A LSQ+RTE AQKAGHFDKEIVPVFVSS+KG+TEVKTDEFPR GS +EA+SKLKP FL 
Sbjct: 181 VAVLSQNRTEHAQKAGHFDKEIVPVFVSSKKGLTEVKTDEFPRHGSNMEAVSKLKPCFLM 240

Query: 778 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
           DGTGTVTPANASGINDGAAAVVLMKKSEA NRGLTPLA IVSW+QA VEPSIMG GPIPA
Sbjct: 241 DGTGTVTPANASGINDGAAAVVLMKKSEAGNRGLTPLAQIVSWAQAGVEPSIMGIGPIPA 300

Query: 958 IKQAVA 975
           IKQAVA
Sbjct: 301 IKQAVA 306


>ref|NP_001039540.1| acetyl-CoA acetyltransferase, mitochondrial precursor [Bos taurus].
          Length = 422

 Score =  218 bits (555), Expect = 6e-57
 Identities = 128/300 (42%), Positives = 180/300 (60%), Gaps = 2/300 (0%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           VVIVSA RT IGSF G+LS++P   LGS  I+  +++A +  +EV E   G+VL  G GQ
Sbjct: 37  VVIVSAIRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQ 96

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 438
            P RQA +GAG+P S P  +   +C SG+KA+ +A+Q +  G   ++VAGGME+MS  P+
Sbjct: 97  APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY 156

Query: 439 LVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 618
           +++ R     G   L D I+ DGLTD ++  HMG  AEN AKK  ++RE+QD  A  S  
Sbjct: 157 VMN-RGATPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNITREEQDTYALNSYT 215

Query: 619 RTEKAQKAGHFDKEIVPV--FVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 792
           R++ A +AG F  E+VPV   V  +  V   + +E+ R       + KLK  F  +  GT
Sbjct: 216 RSKAAWEAGRFGNEVVPVTITVKGKPDVVVKEDEEYKR--VDFSKIPKLKTVFQRE-NGT 272

Query: 793 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
           VT ANAS +NDGAAAVVLM    A+   + PLA I +++ A+VEP      P  A+ + +
Sbjct: 273 VTAANASTLNDGAAAVVLMTADAAKRLNVKPLARIAAFADAAVEPIDFPLAPAYAVPKVL 332


>ref|NP_001030419.1| 3-ketoacyl-CoA thiolase, mitochondrial [Bos taurus].
          Length = 397

 Score =  215 bits (548), Expect = 4e-56
 Identities = 121/300 (40%), Positives = 171/300 (57%), Gaps = 2/300 (0%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           V IV+A RT  G++ G L      D+     R  L    V P+ V  V+ G+V+ +    
Sbjct: 7   VFIVAAKRTPFGAYGGLLKDFTPTDMAEFAARAALSAGRVSPETVDSVVVGNVMQSSSDA 66

Query: 259 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 435
             + R   +  GIP   PA +   +CGSG +++    Q I   DS +V+ GG E+MS+AP
Sbjct: 67  IYLARHVGLRVGIPKETPAITINRLCGSGFQSIVSGCQEICSRDSEVVLCGGTESMSQAP 126

Query: 436 HLV-HLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALS 612
           + V ++R G +LG     +  L  GLTD      M ITAEN+A K Q+SRED DR A  S
Sbjct: 127 YCVRNIRFGTKLGSELKLEDTLWTGLTDTHVQMPMAITAENLAVKHQISREDCDRYALQS 186

Query: 613 QDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 792
           Q R + A  AG+FD E+ PV V +RKG   ++ DE PRP +T+E ++KL P F  +  GT
Sbjct: 187 QQRWKTANDAGYFDNEMAPVEVKTRKGKQTMQVDEHPRPQTTMEQLNKLPPVFKKE--GT 244

Query: 793 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
           VT  NASG++DGA AV++  +   +    TPLA IV +  +  +P+IMG GP+PAI  A+
Sbjct: 245 VTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPTIMGIGPVPAISGAL 304


>ref|NP_001029491.1| 3-ketoacyl-CoA thiolase, peroxisomal [Bos taurus].
          Length = 424

 Score =  159 bits (401), Expect = 5e-39
 Identities = 116/309 (37%), Positives = 162/309 (52%), Gaps = 6/309 (1%)
 Frame = +1

Query: 64  AGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVL 240
           A ++ VV+V   RT IG S  G        +L S V+  VL+   + P ++ ++  G+VL
Sbjct: 33  ASAEDVVVVHGRRTAIGRSGRGGFKDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNVL 92

Query: 241 TAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMEN 420
             G G    R A   + IP +VP  +    C SGL+AV   A  I  G   I +A G+E+
Sbjct: 93  QPGAGATMARIAQFLSDIPETVPLSAVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVES 152

Query: 421 MSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRL 600
           MS A          RL E       L            MGIT+ENVA+++ +SRE QD  
Sbjct: 153 MSLADRGNPGNITSRLVEKEKARDCLIP----------MGITSENVAEQFGISREKQDTF 202

Query: 601 AALSQDRTEKAQKAGHFDKEIVPVFVSSR--KGVTE---VKTDEFPRPGSTLEAMSKLKP 765
           A  SQ +  +AQ+ G F  EIVPV  + R  KG  +   V  DE  RP +T+E ++KLKP
Sbjct: 203 ALASQQKAARAQRQGCFQAEIVPVTTTVRDDKGTEQSITVAQDEGIRPNTTMEGLAKLKP 262

Query: 766 YFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTG 945
            F  DG G+ T  N+S ++DGAAA++L ++S+AE  GL  L  + S++   V P IMG G
Sbjct: 263 AF-KDG-GSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIG 320

Query: 946 PIPAIKQAV 972
           P  AI  A+
Sbjct: 321 PAYAIPVAL 329


>ref|NP_776761.1| trifunctional enzyme subunit beta, mitochondrial precursor [Bos
           taurus].
          Length = 475

 Score =  114 bits (286), Expect = 1e-25
 Identities = 93/300 (31%), Positives = 142/300 (47%), Gaps = 17/300 (5%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           +V+V   RT       +   +  HDL    +  +L R +V    V  +IFG V+      
Sbjct: 55  IVVVDGVRTPFLLSGTSYKDLMPHDLARAALSGLLHRTSVPKDVVDYIIFGTVIQEVKTS 114

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
           N  R+A++GAG     PA +  M C S  +A+  A   I  G   +VVAGG+E MS  P 
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAGGVELMSDIPI 174

Query: 436 --------HLVHLRTGVRLGEAALTDSIL--------CDGLTDAFHNYHMGITAENVAKK 567
                    ++ L     L +     S             +++   +  MG +A+ +A  
Sbjct: 175 RHSRKMRKMMLDLNKAKTLAQRLSIISKFRLNFLSPELPAVSEFSTSETMGHSADRLAAA 234

Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
           + +SRE+QD  A  S    +KAQ  G    ++VP  V  R  VT+   D   RP S+L+ 
Sbjct: 235 FAISREEQDEYALRSHSLAKKAQDEGLLS-DVVPFKVPGRDTVTQ---DNGIRP-SSLDQ 289

Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
           M+KLKP F+    GTVT AN+S + DGA+AV++M + +A   G  P A++  +   S +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAVLIMAEEKALAMGYKPKAYLRDFMYVSQDP 348


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.316    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,302,899
Number of extensions: 1181111
Number of successful extensions: 3763
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3745
Number of HSP's successfully gapped: 6
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007731
         (976 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_541180.2| PREDICTED: similar to Acetyl-CoA acetyltransfer...   539   e-153
Alignment   gi|XP_546539.2| PREDICTED: similar to Acetyl-CoA acetyltransfer...   224   7e-59
Alignment   gi|XP_534222.2| PREDICTED: similar to 3-ketoacyl-CoA thiolase, ...   153   3e-37
Alignment   gi|XP_547690.2| PREDICTED: similar to acetyl-coenzyme A acyltra...   116   3e-26
Alignment   gi|XP_859591.1| PREDICTED: similar to Trifunctional enzyme beta...   114   2e-25
Alignment   gi|XP_859555.1| PREDICTED: similar to Trifunctional enzyme beta...   114   2e-25
Alignment   gi|XP_849696.1| PREDICTED: similar to Trifunctional enzyme beta...   114   2e-25
Alignment   gi|XP_865227.1| PREDICTED: similar to hydroxyacyl dehydrogenase...   109   3e-24
Alignment   gi|XP_865211.1| PREDICTED: similar to hydroxyacyl-Coenzyme A de...   109   3e-24
Alignment   gi|XP_538166.1| PREDICTED: similar to hydroxyacyl dehydrogenase...   109   3e-24

>ref|XP_541180.2| PREDICTED: similar to Acetyl-CoA acetyltransferase, cytosolic
           (Cytosolic acetoacetyl-CoA thiolase) (Acetyl CoA
           transferase-like protein) [Canis familiaris].
          Length = 397

 Score =  539 bits (1389), Expect = e-153
 Identities = 268/306 (87%), Positives = 287/306 (93%)
 Frame = +1

Query: 58  MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
           MSAGSDPVVIVSAART IGSFNGAL+TVP HDLGS+VI+EVL+RA V P+EVSEVIFGHV
Sbjct: 1   MSAGSDPVVIVSAARTPIGSFNGALATVPAHDLGSSVIKEVLRRAAVAPEEVSEVIFGHV 60

Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
           L AGCGQNPVRQAS+GAGIPY+VPAWSCQM+CGSGLKAVCLAAQ+IG+GDS IVVAGGME
Sbjct: 61  LAAGCGQNPVRQASMGAGIPYAVPAWSCQMVCGSGLKAVCLAAQSIGIGDSSIVVAGGME 120

Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
           +MSKAPHLVHLR GV++GE  L DSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQD+
Sbjct: 121 SMSKAPHLVHLRAGVKIGEMPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDK 180

Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 777
            A LSQ+RTE AQKAG+FDKEIVPVFVSSRKG+TEVKTDEFPR GS +EA+SKLKPYFLT
Sbjct: 181 CAVLSQNRTESAQKAGYFDKEIVPVFVSSRKGLTEVKTDEFPRHGSNIEAVSKLKPYFLT 240

Query: 778 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
           DGTGTVTPANASGINDGAAAVVLMKKSEA NRGLTPLA IVSWSQ  VEPSIMGTGPIPA
Sbjct: 241 DGTGTVTPANASGINDGAAAVVLMKKSEAANRGLTPLAQIVSWSQVGVEPSIMGTGPIPA 300

Query: 958 IKQAVA 975
           IKQAVA
Sbjct: 301 IKQAVA 306


>ref|XP_546539.2| PREDICTED: similar to Acetyl-CoA acetyltransferase, mitochondrial
           precursor (Acetoacetyl-CoA thiolase) (T2) [Canis
           familiaris].
          Length = 433

 Score =  224 bits (572), Expect = 7e-59
 Identities = 126/298 (42%), Positives = 182/298 (61%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           VVIVSAART IGSF G+LS++P   LGS  I+ V+++A +  +EV E   G+VL  G GQ
Sbjct: 48  VVIVSAARTPIGSFLGSLSSLPATKLGSIAIQGVIEKAGIPKEEVKEAYMGNVLQGGEGQ 107

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 438
            P RQA++GAG+P S P  +   +C SG+KA+ +A+Q++  G   ++VAGGME+MS  P+
Sbjct: 108 APTRQAALGAGLPISTPCTTVNKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPY 167

Query: 439 LVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 618
           ++  R     G   L D I+ DGLTD ++  HMG  AEN AKK  ++RE+QD  A  S  
Sbjct: 168 VMS-RGATPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKMNITREEQDTYALSSYT 226

Query: 619 RTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVT 798
           R++ A +AG F  E++PV V+++     + T++          + KLK  F  +  GTVT
Sbjct: 227 RSKAAWEAGRFGSEVIPVTVTTKGKPDVLVTEDEEYKRVDFSKVPKLKTVFQKE-NGTVT 285

Query: 799 PANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
            ANAS +NDGAAAVVLM    A    + PLA + +++ A+VEP      P  A+ + +
Sbjct: 286 AANASTLNDGAAAVVLMTADAARRLKVKPLARVAAFADAAVEPIDFPVAPAYAVPKVL 343


>ref|XP_534222.2| PREDICTED: similar to 3-ketoacyl-CoA thiolase, peroxisomal
           precursor (Beta-ketothiolase) (Acetyl-CoA
           acyltransferase) (Peroxisomal 3-oxoacyl-CoA thiolase)
           isoform 1 [Canis familiaris].
          Length = 426

 Score =  153 bits (386), Expect = 3e-37
 Identities = 113/309 (36%), Positives = 157/309 (50%), Gaps = 6/309 (1%)
 Frame = +1

Query: 64  AGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVL 240
           A +D VV+V   RT IG    G        +L S V+  VL+   + P ++ ++  G+VL
Sbjct: 35  ASADDVVVVHGRRTAIGRGGRGGFKDTTPDELLSAVMTAVLQDVRLSPAQLGDICVGNVL 94

Query: 241 TAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMEN 420
             G G    R A   + IP +VP  +    C SGL+A+   A  I  G   I +A G+E+
Sbjct: 95  QPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQALANIAGGIRNGSYDIGMACGVES 154

Query: 421 MSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRL 600
           MS A          RL E       L            MGIT+ENVA+++ +SRE QD  
Sbjct: 155 MSLADRGNPGNITSRLVEKKKARDCLIP----------MGITSENVAERFGISREKQDTF 204

Query: 601 AALSQDRTEKAQKAGHFDKEIVPVF--VSSRKGVTEVKT---DEFPRPGSTLEAMSKLKP 765
           A  SQ +  +AQ  G F  EIVPV   V   KG   + T   DE  RP +T+E ++KLKP
Sbjct: 205 ALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGAERIITVAQDEGIRPNTTMEGLAKLKP 264

Query: 766 YFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTG 945
            F   G+   T  N+S ++DGAAA++L ++S+AE  GL  L  + S++   V P IMG G
Sbjct: 265 AFKQGGS--TTAGNSSQVSDGAAALLLARRSKAEELGLPVLGVLRSYAVVGVPPDIMGIG 322

Query: 946 PIPAIKQAV 972
           P  AI  A+
Sbjct: 323 PAYAIPVAL 331


>ref|XP_547690.2| PREDICTED: similar to acetyl-coenzyme A acyltransferase 2 [Canis
           familiaris].
          Length = 382

 Score =  116 bits (291), Expect = 3e-26
 Identities = 87/299 (29%), Positives = 144/299 (48%), Gaps = 1/299 (0%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           V IV+A RT  G++ G L      DL     R  L    V P+ +  +I G+V+ +    
Sbjct: 3   VFIVAAKRTPFGAYGGLLKDFTATDLTELAARAALSAGGVSPEAIDSIIVGNVMQSSSDA 62

Query: 259 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 435
             + R   +  G+P  VPA+    +CGSG +++    Q I   D+     GG   +  +P
Sbjct: 63  PYLARHVGLRVGVPKEVPAFVVNRLCGSGFQSIVSGCQRITGKDAEKKGCGGTGCLGLSP 122

Query: 436 HLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQ 615
           H      G +  + +L+ + L +   ++        T   +    + S +D  R    ++
Sbjct: 123 H------GQKNQKQSLSPTELQNLDYNSMSESQFRSTIIQLLVALEKSIKDS-RDFMTAE 175

Query: 616 DRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTV 795
            R  +A+     ++    + V + + V EV  +E  +P +TLE ++KL P F  +GT  V
Sbjct: 176 FRANQAEIKNQLNEMQSKLEVLTMR-VNEV--EERVKPRTTLEQLNKLPPLFKKEGT--V 230

Query: 796 TPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
           T  NASG++DGA AV++  +   +    TPLA IV +  +  +PSIMG GP+PAI  A+
Sbjct: 231 TAGNASGVSDGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPSIMGIGPVPAINGAL 289


>ref|XP_859591.1| PREDICTED: similar to Trifunctional enzyme beta subunit,
           mitochondrial precursor (TP-beta) isoform 3 [Canis
           familiaris].
          Length = 440

 Score =  114 bits (284), Expect = 2e-25
 Identities = 95/300 (31%), Positives = 141/300 (47%), Gaps = 17/300 (5%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           +V+V   R        +   +  HDL    +  +L R NV    V  +IFG V+      
Sbjct: 55  IVVVDGVRIPFLQSGTSYKDLMPHDLARAALSGLLHRTNVPKDVVDYIIFGTVIQEVKTS 114

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
           N  R+A++GAG     PA +  M C S  +A+      I  G   +VVAGG+E MS  P 
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVVVAGGVELMSDVPI 174

Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
                    ++ L     LG+  +L      + L+           +  MG +A+ +A  
Sbjct: 175 RHSRKMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 234

Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
           + VSR DQD  A  S    +KAQ  G    +IVP  V  +  VT+   D   RP S+LE 
Sbjct: 235 FAVSRADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNGIRP-SSLEQ 289

Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
           M+KLKP F+    GTVT AN+S + DGA+A+++M + +A   G  P A++  +   S +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFVYVSQDP 348


>ref|XP_859555.1| PREDICTED: similar to Trifunctional enzyme beta subunit,
           mitochondrial precursor (TP-beta) isoform 2 [Canis
           familiaris].
          Length = 420

 Score =  114 bits (284), Expect = 2e-25
 Identities = 95/300 (31%), Positives = 141/300 (47%), Gaps = 17/300 (5%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           +V+V   R        +   +  HDL    +  +L R NV    V  +IFG V+      
Sbjct: 55  IVVVDGVRIPFLQSGTSYKDLMPHDLARAALSGLLHRTNVPKDVVDYIIFGTVIQEVKTS 114

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
           N  R+A++GAG     PA +  M C S  +A+      I  G   +VVAGG+E MS  P 
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVVVAGGVELMSDVPI 174

Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
                    ++ L     LG+  +L      + L+           +  MG +A+ +A  
Sbjct: 175 RHSRKMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 234

Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
           + VSR DQD  A  S    +KAQ  G    +IVP  V  +  VT+   D   RP S+LE 
Sbjct: 235 FAVSRADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNGIRP-SSLEQ 289

Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
           M+KLKP F+    GTVT AN+S + DGA+A+++M + +A   G  P A++  +   S +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFVYVSQDP 348


>ref|XP_849696.1| PREDICTED: similar to Trifunctional enzyme beta subunit,
           mitochondrial precursor (TP-beta) isoform 1 [Canis
           familiaris].
          Length = 475

 Score =  114 bits (284), Expect = 2e-25
 Identities = 95/300 (31%), Positives = 141/300 (47%), Gaps = 17/300 (5%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           +V+V   R        +   +  HDL    +  +L R NV    V  +IFG V+      
Sbjct: 55  IVVVDGVRIPFLQSGTSYKDLMPHDLARAALSGLLHRTNVPKDVVDYIIFGTVIQEVKTS 114

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
           N  R+A++GAG     PA +  M C S  +A+      I  G   +VVAGG+E MS  P 
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVVVAGGVELMSDVPI 174

Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
                    ++ L     LG+  +L      + L+           +  MG +A+ +A  
Sbjct: 175 RHSRKMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 234

Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
           + VSR DQD  A  S    +KAQ  G    +IVP  V  +  VT+   D   RP S+LE 
Sbjct: 235 FAVSRADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNGIRP-SSLEQ 289

Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
           M+KLKP F+    GTVT AN+S + DGA+A+++M + +A   G  P A++  +   S +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFVYVSQDP 348


>ref|XP_865227.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit B isoform
           4 [Canis familiaris].
          Length = 444

 Score =  109 bits (273), Expect = 3e-24
 Identities = 94/300 (31%), Positives = 139/300 (46%), Gaps = 17/300 (5%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           +V+V   R        +   +  HDL       +L R NV    V  +IFG V+      
Sbjct: 24  IVVVDGVRIPFLQSGTSYKDLMPHDLARAAFSGLLHRTNVSKDVVDYIIFGTVIQEVKTS 83

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
           N  R+A++GAG     PA +  M C S  +A+      I  G   +VVAGG+E MS  P 
Sbjct: 84  NVAREAALGAGFSDKTPAHTVTMACISANQAMITGVGLIASGQCDVVVAGGVELMSDVPI 143

Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
                    ++ L     LG+  +L      + L+           +  MG +A+ +A  
Sbjct: 144 RHSRKIRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 203

Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
           + VSR DQD  A  S    +KAQ  G    +IVP  V  +  VT+   D   RP S+LE 
Sbjct: 204 FAVSRADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNDIRP-SSLEQ 258

Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
           M+KLKP F+    GTVT AN+S + DGA+A+++M + +A   G    A++  +   S +P
Sbjct: 259 MAKLKPAFIKP-YGTVTTANSSFLTDGASAMLIMAEEKALAMGYKLKAYLRDFVYVSQDP 317


>ref|XP_865211.1| PREDICTED: similar to hydroxyacyl-Coenzyme A
           dehydrogenase/3-ketoacyl-Coenzyme A
           thiolase/enoyl-Coenzyme A hydratase (trifunctional
           protein), beta subunit isoform 3 [Canis familiaris].
          Length = 403

 Score =  109 bits (273), Expect = 3e-24
 Identities = 94/300 (31%), Positives = 139/300 (46%), Gaps = 17/300 (5%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           +V+V   R        +   +  HDL       +L R NV    V  +IFG V+      
Sbjct: 38  IVVVDGVRIPFLQSGTSYKDLMPHDLARAAFSGLLHRTNVSKDVVDYIIFGTVIQEVKTS 97

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
           N  R+A++GAG     PA +  M C S  +A+      I  G   +VVAGG+E MS  P 
Sbjct: 98  NVAREAALGAGFSDKTPAHTVTMACISANQAMITGVGLIASGQCDVVVAGGVELMSDVPI 157

Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
                    ++ L     LG+  +L      + L+           +  MG +A+ +A  
Sbjct: 158 RHSRKIRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 217

Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
           + VSR DQD  A  S    +KAQ  G    +IVP  V  +  VT+   D   RP S+LE 
Sbjct: 218 FAVSRADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNDIRP-SSLEQ 272

Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
           M+KLKP F+    GTVT AN+S + DGA+A+++M + +A   G    A++  +   S +P
Sbjct: 273 MAKLKPAFIKP-YGTVTTANSSFLTDGASAMLIMAEEKALAMGYKLKAYLRDFVYVSQDP 331


>ref|XP_538166.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit B isoform
           1 [Canis familiaris].
          Length = 458

 Score =  109 bits (273), Expect = 3e-24
 Identities = 94/300 (31%), Positives = 139/300 (46%), Gaps = 17/300 (5%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           +V+V   R        +   +  HDL       +L R NV    V  +IFG V+      
Sbjct: 38  IVVVDGVRIPFLQSGTSYKDLMPHDLARAAFSGLLHRTNVSKDVVDYIIFGTVIQEVKTS 97

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
           N  R+A++GAG     PA +  M C S  +A+      I  G   +VVAGG+E MS  P 
Sbjct: 98  NVAREAALGAGFSDKTPAHTVTMACISANQAMITGVGLIASGQCDVVVAGGVELMSDVPI 157

Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
                    ++ L     LG+  +L      + L+           +  MG +A+ +A  
Sbjct: 158 RHSRKIRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 217

Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
           + VSR DQD  A  S    +KAQ  G    +IVP  V  +  VT+   D   RP S+LE 
Sbjct: 218 FAVSRADQDEYALRSHSLAKKAQDEGLLS-DIVPFKVPGKDTVTK---DNDIRP-SSLEQ 272

Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
           M+KLKP F+    GTVT AN+S + DGA+A+++M + +A   G    A++  +   S +P
Sbjct: 273 MAKLKPAFIKP-YGTVTTANSSFLTDGASAMLIMAEEKALAMGYKLKAYLRDFVYVSQDP 331


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.316    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,890,138
Number of extensions: 1205822
Number of successful extensions: 3995
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3975
Number of HSP's successfully gapped: 22
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007731
         (976 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001928380.1| PREDICTED: acetyl-CoA acetyltransferase, cyt...   599   e-172
Alignment   gi|XP_003357324.1| PREDICTED: acetyl-CoA acetyltransferase, mit...   217   9e-57
Alignment   gi|NP_001161110.1| 3-ketoacyl-CoA thiolase, mitochondrial [Sus ...   211   6e-55
Alignment   gi|XP_003132151.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxi...   151   6e-37
Alignment   gi|XP_003132161.2| PREDICTED: 3-ketoacyl-CoA thiolase, peroxiso...   142   3e-34
Alignment   gi|NP_999131.1| long-chain 3-ketoacyl-CoA thiolase [Sus scrofa].     107   8e-24
Alignment   gi|XP_003132152.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxi...   100   2e-21

>ref|XP_001928380.1| PREDICTED: acetyl-CoA acetyltransferase, cytosolic [Sus scrofa].
          Length = 397

 Score =  599 bits (1545), Expect = e-172
 Identities = 304/306 (99%), Positives = 304/306 (99%)
 Frame = +1

Query: 58  MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
           MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV
Sbjct: 1   MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 60

Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
           LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME
Sbjct: 61  LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 120

Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
           NMSKAPHLV LRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR
Sbjct: 121 NMSKAPHLVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 180

Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 777
           LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT
Sbjct: 181 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 240

Query: 778 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
           DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQA VEPSIMGTGPIPA
Sbjct: 241 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPA 300

Query: 958 IKQAVA 975
           IKQAVA
Sbjct: 301 IKQAVA 306


>ref|XP_003357324.1| PREDICTED: acetyl-CoA acetyltransferase, mitochondrial [Sus
           scrofa].
          Length = 426

 Score =  217 bits (552), Expect = 9e-57
 Identities = 129/299 (43%), Positives = 180/299 (60%), Gaps = 1/299 (0%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           VVIVSA RT IGSF G+LS++P   LGS  I+  +++A +  +EV EV  G+VL  G GQ
Sbjct: 41  VVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQ 100

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 438
            P RQA +GAG+P S P  +   +C SG+KA+ +A+Q +  G   ++VAGGME+MS  P+
Sbjct: 101 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY 160

Query: 439 LVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 618
           ++  R     G   L D I+ DGLTD ++  HMG  AEN AKK  + R++QD  A  S  
Sbjct: 161 VMD-RGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYT 219

Query: 619 RTEKAQKAGHFDKEIVPVFVSSR-KGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTV 795
           R++ A +AG F  E++PV +S + K  T VK DE          + KLK  F  +  GTV
Sbjct: 220 RSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE-EYKRVDFNKVPKLKTVFQKE-NGTV 277

Query: 796 TPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
           T ANAS +NDGAAAVVLM    A+   + PLA I +++ A+V+P      P  A+ + +
Sbjct: 278 TAANASTLNDGAAAVVLMTADAAKRLNVKPLARIAAFADAAVDPIDFPIAPAYAVPKVL 336


>ref|NP_001161110.1| 3-ketoacyl-CoA thiolase, mitochondrial [Sus scrofa].
          Length = 397

 Score =  211 bits (536), Expect = 6e-55
 Identities = 120/300 (40%), Positives = 172/300 (57%), Gaps = 2/300 (0%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           V IV+A RT  G+F G L      DL     R  L   NV P+ +  VI G+V+ +    
Sbjct: 7   VFIVAAKRTPFGAFGGLLKDFTATDLTEFAARAALSAGNVSPETIDSVIVGNVMQSSSDA 66

Query: 259 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 435
             + R   +  GIP   PA +   +CGSG +++    Q I   D+++V+ GG E+MS+AP
Sbjct: 67  IYLARHVGLRVGIPKETPALTVNRLCGSGFQSIVNGCQEICAKDAKVVLCGGTESMSQAP 126

Query: 436 HLV-HLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALS 612
           + V ++R G +LG     +  L  GLTD      M ITAEN+A K ++SRE+ D+ A  S
Sbjct: 127 YCVRNIRFGTKLGLDLKLEDSLWTGLTDQHIQIPMAITAENLAAKHKISREECDKYALQS 186

Query: 613 QDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 792
           Q R + A  AG+F+ E+ P+ V ++KG   ++ DE  RP +TLE +SKL P F  +  GT
Sbjct: 187 QQRWKAANDAGYFNNEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLSKLPPVFKKE--GT 244

Query: 793 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
           VT  NASGI+DGA AV++  +   +    TPLA IV +  +  +PSIMG GP+PAI  A+
Sbjct: 245 VTAGNASGISDGAGAVIIASEDAVKKHNFTPLARIVGYFASGCDPSIMGIGPVPAITGAL 304


>ref|XP_003132151.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxisomal isoform 1 [Sus
           scrofa].
          Length = 426

 Score =  151 bits (381), Expect = 6e-37
 Identities = 110/310 (35%), Positives = 158/310 (50%), Gaps = 7/310 (2%)
 Frame = +1

Query: 64  AGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVL 240
           A ++ +V+V   RT IG S  G        +L S V+  VL+   + P ++ ++  G+VL
Sbjct: 35  ASAEDIVVVHGRRTAIGRSGRGGFKDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNVL 94

Query: 241 TAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMEN 420
             G G    R A   + IP +VP  +    C SGL+AV   A  I  G   I +A G+E+
Sbjct: 95  QPGAGAVMARIAQFLSDIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVES 154

Query: 421 MSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRL 600
           M+            RL E       L            MGIT+ENVAK++ +SRE QD  
Sbjct: 155 MTLGDRGNPGNISSRLVEKEKARDCLIP----------MGITSENVAKRFGISREKQDTF 204

Query: 601 AALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKLK 762
           A  SQ +  +AQ  G F  EIVPV  +      + K +T V  DE  RP +T+E ++KLK
Sbjct: 205 ALASQQKAARAQSKGCFQAEIVPVTTTVYDDKGNEKSIT-VAQDEGIRPNTTMEGLAKLK 263

Query: 763 PYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGT 942
           P F     G+ T  N+S ++DGAAA++L ++S+A+  GL  L  + S++   V P IMG 
Sbjct: 264 PAFKQG--GSTTAGNSSQVSDGAAALLLARRSKAKELGLPILGILRSYAVVGVPPDIMGI 321

Query: 943 GPIPAIKQAV 972
           GP  AI  A+
Sbjct: 322 GPAYAIPVAL 331


>ref|XP_003132161.2| PREDICTED: 3-ketoacyl-CoA thiolase, peroxisomal-like [Sus scrofa].
          Length = 390

 Score =  142 bits (358), Expect = 3e-34
 Identities = 111/322 (34%), Positives = 159/322 (49%), Gaps = 6/322 (1%)
 Frame = +1

Query: 25  TSSGGARLCRRMSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDP 204
           T+  G RL  R      P +  SAA   +     +L      +L S V+  VL+   + P
Sbjct: 13  TALSGVRLGER----GFPGIPSSAASGGLSRPRFSLQDTTPDELLSAVMTAVLQDVKLSP 68

Query: 205 KEVSEVIFGHVLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVG 384
            ++ ++  G+VL  G G    R A   + IP +VP  +    C SGL+AV   A  I  G
Sbjct: 69  AQLGDICVGNVLQPGAGAVMARIAQFLSDIPETVPLSTVNRQCSSGLQAVANIAGGIRNG 128

Query: 385 DSRIVVAGGMENMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAK 564
              I +A G+E+M+            RL E       L            MGIT+ENVAK
Sbjct: 129 SYDIGMACGVESMTLGDRGNPGNISSRLVEKEKARDCLIP----------MGITSENVAK 178

Query: 565 KWQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPR 726
           ++ +SRE QD  A  SQ +  +AQ  G F  EIVPV  +      + K +T V  DE  R
Sbjct: 179 RFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVYDDKGNEKSIT-VAQDEGIR 237

Query: 727 PGSTLEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSW 906
           P +T+E ++KLKP F     G+ T  N+S ++DGAAA++L ++S+A+  GL  L  + S+
Sbjct: 238 PNTTMEGLAKLKPAFKQG--GSTTAGNSSQVSDGAAALLLARRSKAKELGLPILGILRSY 295

Query: 907 SQASVEPSIMGTGPIPAIKQAV 972
           +   V P IMG GP  AI  A+
Sbjct: 296 AVVGVPPDIMGIGPAYAIPVAL 317


>ref|NP_999131.1| long-chain 3-ketoacyl-CoA thiolase [Sus scrofa].
          Length = 442

 Score =  107 bits (268), Expect = 8e-24
 Identities = 90/300 (30%), Positives = 138/300 (46%), Gaps = 17/300 (5%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           +V+V   R        +   +  HDL    +  +L R +V    V  ++FG V+      
Sbjct: 22  IVVVDGVRIPFLQSGTSYKELMPHDLARAALLGLLHRTSVPKDVVDYLVFGTVIQEVKTS 81

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
           N  R+A++GAG     PA +  M C S  +A+      I  G   +VVAGG+E MS  P 
Sbjct: 82  NVAREAALGAGFSDKTPAHTVTMACISSNQAMTTGVSLIASGQFDVVVAGGVELMSDIPI 141

Query: 436 --------HLVHLRTGVRLGEAALTDSIL--------CDGLTDAFHNYHMGITAENVAKK 567
                    ++ L     LG+     S             + +   +  MG +A+ +A  
Sbjct: 142 RHSRKMRKMMLDLNKAKTLGQRLSLISKFRLNFLSPELPAVAEFSTSETMGHSADRLAAA 201

Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
           + VSR +QD  A  S    +KAQ  G    ++VP  V  +  V +   D   RP S+LE 
Sbjct: 202 FAVSRSEQDEYALRSHSLAKKAQDEGLLS-DVVPFKVPGKDTVLK---DNGIRP-SSLEQ 256

Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
           M+KLKP F+    GTVT AN+S + DGA+AV++M + +A   G  P A++  +   S +P
Sbjct: 257 MAKLKPAFIKP-YGTVTAANSSFLTDGASAVLIMAEEKALAMGYKPKAYLRDFIYVSQDP 315


>ref|XP_003132152.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxisomal isoform 2 [Sus
           scrofa].
          Length = 333

 Score =  100 bits (248), Expect = 2e-21
 Identities = 80/250 (32%), Positives = 114/250 (45%), Gaps = 7/250 (2%)
 Frame = +1

Query: 64  AGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVL 240
           A ++ +V+V   RT IG S  G        +L S V+  VL+   + P ++ ++  G+VL
Sbjct: 35  ASAEDIVVVHGRRTAIGRSGRGGFKDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNVL 94

Query: 241 TAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMEN 420
             G G    R A   + IP +VP  +    C SGL+AV               +AGG+ N
Sbjct: 95  QPGAGAVMARIAQFLSDIPETVPLSTVNRQCSSGLQAVAN-------------IAGGIRN 141

Query: 421 MSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRL 600
            S             +G A                    GIT+ENVAK++ +SRE QD  
Sbjct: 142 GS-----------YDIGMAC-------------------GITSENVAKRFGISREKQDTF 171

Query: 601 AALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKLK 762
           A  SQ +  +AQ  G F  EIVPV  +      + K +T V  DE  RP +T+E ++KLK
Sbjct: 172 ALASQQKAARAQSKGCFQAEIVPVTTTVYDDKGNEKSIT-VAQDEGIRPNTTMEGLAKLK 230

Query: 763 PYFLTDGTGT 792
           P F   G+ T
Sbjct: 231 PAFKQGGSTT 240


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.316    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,977,517
Number of extensions: 758586
Number of successful extensions: 2357
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2344
Number of HSP's successfully gapped: 9
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007731
         (976 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033364.2| acetyl-CoA acetyltransferase, cytosolic [Mus mu...   529   e-150
Alignment   gi|NP_694791.2| acetyl-Coenzyme A acetyltransferase 3 [Mus musc...   520   e-148
Alignment   gi|NP_659033.1| acetyl-CoA acetyltransferase, mitochondrial pre...   216   3e-56
Alignment   gi|NP_803421.1| 3-ketoacyl-CoA thiolase, mitochondrial [Mus mus...   200   1e-51
Alignment   gi|NP_666342.1| 3-ketoacyl-CoA thiolase B, peroxisomal precurso...   156   2e-38
Alignment   gi|NP_570934.1| 3-ketoacyl-CoA thiolase A, peroxisomal precurso...   153   2e-37
Alignment   gi|NP_663533.1| trifunctional enzyme subunit beta, mitochondria...   118   6e-27
Alignment   gi|XP_003086283.1| PREDICTED: trifunctional enzyme subunit beta...    81   1e-15

>ref|NP_033364.2| acetyl-CoA acetyltransferase, cytosolic [Mus musculus].
          Length = 397

 Score =  529 bits (1362), Expect = e-150
 Identities = 264/306 (86%), Positives = 281/306 (91%)
 Frame = +1

Query: 58  MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
           M+AGSDPVVIVSAART IGSFNGALSTVPVH++G+TVI+EVL+RA V P+EVSEVIFGHV
Sbjct: 1   MNAGSDPVVIVSAARTAIGSFNGALSTVPVHEMGTTVIKEVLQRAKVAPEEVSEVIFGHV 60

Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
           LTAGCGQNP RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQ+I +GDS IVVAGGME
Sbjct: 61  LTAGCGQNPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGME 120

Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
           NMSKAPHL HLRTGVR+GE  L DSILCDGLTDAFHNYHMGITAENVAKKWQVSRE QD+
Sbjct: 121 NMSKAPHLTHLRTGVRMGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDK 180

Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 777
           +A LSQ+R E AQKAGHFDKEIVPV VSSRKG+TEVK DEFPR GS LEAM KLKPYFLT
Sbjct: 181 VAVLSQNRAEHAQKAGHFDKEIVPVLVSSRKGLTEVKIDEFPRHGSNLEAMGKLKPYFLT 240

Query: 778 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
           DGTGTVTPANASG+NDGAAAVVLMKK+EAE R L PLA IVSWSQA VEPS+MG GPIPA
Sbjct: 241 DGTGTVTPANASGMNDGAAAVVLMKKTEAERRMLKPLARIVSWSQAGVEPSVMGVGPIPA 300

Query: 958 IKQAVA 975
           IKQAVA
Sbjct: 301 IKQAVA 306


>ref|NP_694791.2| acetyl-Coenzyme A acetyltransferase 3 [Mus musculus].
          Length = 397

 Score =  520 bits (1338), Expect = e-148
 Identities = 260/306 (84%), Positives = 278/306 (90%)
 Frame = +1

Query: 58  MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
           M+  SDPVVIVSAART IGSFNGALSTVPVH++G+TVI+EVL+RA V P+EVSEVIFGHV
Sbjct: 1   MNTRSDPVVIVSAARTAIGSFNGALSTVPVHEMGTTVIKEVLQRAKVAPEEVSEVIFGHV 60

Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
           LTAGCGQNP RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQ+I +GDS IVVAGGME
Sbjct: 61  LTAGCGQNPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGME 120

Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
           NMSKAPHL HLRTGVR+GE  L DSILCDGLTDAFHNYHMGITAENVAKKWQVSRE QD+
Sbjct: 121 NMSKAPHLTHLRTGVRVGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDK 180

Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 777
           +A LSQ+R E AQKAGHFDKEIVPV VSSRKG+TEVK DEFPR GS LEAM KLKPYFLT
Sbjct: 181 VAVLSQNRAEHAQKAGHFDKEIVPVLVSSRKGLTEVKIDEFPRHGSNLEAMGKLKPYFLT 240

Query: 778 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
           DGTGTVT ANA+G+NDGAAAVVLMKK+EAE R L PLA IVSWSQA VEPS+MG GPIPA
Sbjct: 241 DGTGTVTTANATGMNDGAAAVVLMKKTEAERRMLKPLARIVSWSQAGVEPSVMGVGPIPA 300

Query: 958 IKQAVA 975
           IKQAVA
Sbjct: 301 IKQAVA 306


>ref|NP_659033.1| acetyl-CoA acetyltransferase, mitochondrial precursor [Mus
           musculus].
          Length = 424

 Score =  216 bits (549), Expect = 3e-56
 Identities = 126/314 (40%), Positives = 185/314 (58%), Gaps = 6/314 (1%)
 Frame = +1

Query: 49  CRRMSAGSDP----VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVS 216
           C   S  S P    VVIVSA RT IGSF G+L++ P   LG+  I+  +++A +  +EV 
Sbjct: 25  CLERSYASKPTLNEVVIVSAIRTPIGSFLGSLASQPATKLGTAAIQGAIEKAGIPKEEVK 84

Query: 217 EVIFGHVLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRI 396
           EV  G+V+  G GQ P RQA++GAG+P S P  +   +C SG+KA+ +A+Q++  G   +
Sbjct: 85  EVYMGNVIQGGEGQAPTRQATLGAGLPISTPCTTVNKVCASGMKAIMMASQSLMCGHQDV 144

Query: 397 VVAGGMENMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQV 576
           +VAGGME+MS  P+++  R     G   L D I+ DGLTD ++  HMG  AEN AKK  +
Sbjct: 145 MVAGGMESMSNVPYVMS-RGATPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKMNI 203

Query: 577 SREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVS--SRKGVTEVKTDEFPRPGSTLEAM 750
           SR++QD  A  S  R+++A  AG F  EI P+ +S   +  V   + +E+ R       +
Sbjct: 204 SRQEQDTYALSSYTRSKEAWDAGKFASEITPITISVKGKPDVVVKEDEEYKR--VDFSKV 261

Query: 751 SKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPS 930
            KLK  F  +  GT+T ANAS +NDGAAA+VLM    A+   + PLA I +++ A+V+P 
Sbjct: 262 PKLKTVFQKE-NGTITAANASTLNDGAAALVLMTAEAAQRLNVKPLARIAAFADAAVDPI 320

Query: 931 IMGTGPIPAIKQAV 972
                P  A+ + +
Sbjct: 321 DFPLAPAYAVPKVL 334


>ref|NP_803421.1| 3-ketoacyl-CoA thiolase, mitochondrial [Mus musculus].
          Length = 397

 Score =  200 bits (509), Expect = 1e-51
 Identities = 112/300 (37%), Positives = 169/300 (56%), Gaps = 2/300 (0%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           V IV+A RT  G++ G L      DL     R  L    V P+ +  VI G+V+ +    
Sbjct: 7   VFIVAAKRTPFGAYGGLLKDFSATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDA 66

Query: 259 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 435
             + R   +  G+P    A +   +CGSG +++    Q I   D+ +V+ GG E+MS++P
Sbjct: 67  AYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMSQSP 126

Query: 436 HLV-HLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALS 612
           + V ++R G + G     +  L  GLTD      MG+TAEN+A K+ +SRED DR A  S
Sbjct: 127 YCVRNVRFGTKFGLDLKLEDTLWAGLTDQHVKLPMGMTAENLAAKYNISREDCDRYALQS 186

Query: 613 QDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 792
           Q R + A +AG+F++E+ P+ V ++KG   ++ DE  RP +TLE + KL   F  D  GT
Sbjct: 187 QQRWKAANEAGYFNEEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLQKLPSVFKKD--GT 244

Query: 793 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
           VT  NASG++DGA AV++  +   +    TPLA +V +  +  +P+IMG GP+PAI  A+
Sbjct: 245 VTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARVVGYFVSGCDPTIMGIGPVPAINGAL 304


>ref|NP_666342.1| 3-ketoacyl-CoA thiolase B, peroxisomal precursor [Mus musculus].
          Length = 424

 Score =  156 bits (395), Expect = 2e-38
 Identities = 113/312 (36%), Positives = 163/312 (52%), Gaps = 7/312 (2%)
 Frame = +1

Query: 58  MSAGSDPVVIVSAARTVIG-SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGH 234
           + A +  VV+V   RT IG +  G        +L S V+  VL+   + P+++ ++  G+
Sbjct: 31  LQASASDVVVVHGRRTPIGRASRGCFKDTTPDELLSAVLTAVLQDVKLKPEQLGDISVGN 90

Query: 235 VLTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGM 414
           VL  G G    R A   +GIP +VP  +    C SGL+AV   A  I  G   I +A G+
Sbjct: 91  VLQPGAGAIMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGV 150

Query: 415 ENMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQD 594
           E+M+ +    H     RL E       L            MGIT+ENVA+++ VSR+ QD
Sbjct: 151 ESMTLSQRGNHGNISSRLLENEKARDCLIP----------MGITSENVAERFGVSRQKQD 200

Query: 595 RLAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSK 756
             A  SQ +   AQ  G F  EIVPV  +       +K +T V  DE  RP +T++ ++K
Sbjct: 201 AFALASQQKAASAQSRGCFHAEIVPVTTTVLNDKGDKKTIT-VSQDEGVRPSTTMQGLAK 259

Query: 757 LKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIM 936
           LKP F  DG G+ T  N+S ++DGAAAV+L ++S+AE  GL  L  + S++   V P +M
Sbjct: 260 LKPAF-KDG-GSTTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVM 317

Query: 937 GTGPIPAIKQAV 972
           G GP  AI  A+
Sbjct: 318 GIGPAYAIPAAL 329


>ref|NP_570934.1| 3-ketoacyl-CoA thiolase A, peroxisomal precursor [Mus musculus].
          Length = 424

 Score =  153 bits (387), Expect = 2e-37
 Identities = 115/311 (36%), Positives = 166/311 (53%), Gaps = 8/311 (2%)
 Frame = +1

Query: 64  AGSDPVVIVSAARTVIG--SFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
           A +  VV+V   RT IG  S  G  +T P  +L S V+  VL+   + P+++ ++  G+V
Sbjct: 33  ASASDVVVVHGRRTPIGRASRGGFKNTTP-DELLSAVLTAVLQDVRLKPEQLGDISVGNV 91

Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
           L  G G    R A   +GIP +VP  +    C SGL+AV   A  I  G   I +A G+E
Sbjct: 92  LEPGAGAVMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVE 151

Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
           +MS    L  +     +    L      D LT       MG+T+ENVA+++ +SR+ QD 
Sbjct: 152 SMS----LSGMGNPGNISSRLLESEKARDCLTP------MGMTSENVAERFGISRQKQDD 201

Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKL 759
            A  SQ +   AQ  G F  EIVPV  +       +K +T V  DE  RP +T++ ++KL
Sbjct: 202 FALASQQKAASAQSRGCFRAEIVPVTTTVLDDKGDKKTIT-VSQDEGVRPSTTMQGLAKL 260

Query: 760 KPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMG 939
           KP F  DG G+ T  N+S ++DGAAAV+L ++S+AE  GL  L  + S++   V P +MG
Sbjct: 261 KPAF-KDG-GSTTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVMG 318

Query: 940 TGPIPAIKQAV 972
            GP  AI  A+
Sbjct: 319 IGPAYAIPAAL 329


>ref|NP_663533.1| trifunctional enzyme subunit beta, mitochondrial precursor [Mus
           musculus].
          Length = 475

 Score =  118 bits (296), Expect = 6e-27
 Identities = 96/300 (32%), Positives = 142/300 (47%), Gaps = 17/300 (5%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           +V+V   R        +   +  HDL    +  +L R N+    V  +IFG V+      
Sbjct: 55  IVVVEGVRIPFLLSGTSYKDLMPHDLARAALSGLLHRTNIPKDVVDYIIFGTVIQEVKTS 114

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP- 435
           N  R+A++GAG     PA +  M C S  +A+  A   I  G   +VVAGG+E MS  P 
Sbjct: 115 NVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAGGVELMSDVPI 174

Query: 436 --------HLVHLRTGVRLGEA-ALTDSILCDGLTDAFH-------NYHMGITAENVAKK 567
                    ++ L     LG+  +L      + L+           N  MG +A+ +A  
Sbjct: 175 RHSRNMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTNETMGHSADRLAAA 234

Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
           + VSR +QD  A  S    +KAQ  GH   +IVP  V  +  VT+   D   RP S+LE 
Sbjct: 235 FAVSRMEQDEYALRSHSLAKKAQDEGHLS-DIVPFKVPGKDTVTK---DNGIRP-SSLEQ 289

Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
           M+KLKP F+    GTVT AN+S + DGA+A+++M +  A   G  P A++  +   S +P
Sbjct: 290 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMSEDRALAMGYKPKAYLRDFIYVSQDP 348


>ref|XP_003086283.1| PREDICTED: trifunctional enzyme subunit beta, mitochondrial-like
           [Mus musculus].
          Length = 330

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 17/206 (8%)
 Frame = +1

Query: 361 AAQAIGVGDSRIVVAGGMENMSKAP---------HLVHLRTGVRLGEA-ALTDSILCDGL 510
           A   I  G   +VVAGG+E MS  P          ++ L     LG+  +L      + L
Sbjct: 4   AVGLIASGQCDVVVAGGVELMSDVPIRHSRNMRKMMLDLNKAKTLGQRLSLLSKFRLNFL 63

Query: 511 TDAFH-------NYHMGITAENVAKKWQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVP 669
           +           N  MG +A+ +A  + VSR +QD  A  S    +KAQ  GH   +IVP
Sbjct: 64  SPELPAVAEFSTNETMGHSADRLAAAFAVSRMEQDEYALHSHSLAKKAQDEGHLS-DIVP 122

Query: 670 VFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLM 849
             V  +  VT+   D   RP S+LE M+KLKP F+    GTVT AN+S + DGA+A+++M
Sbjct: 123 FKVPGKDTVTK---DNGIRP-SSLEQMAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIM 177

Query: 850 KKSEAENRGLTPLAHIVSWSQASVEP 927
            +  A   G  P A++  +   S +P
Sbjct: 178 SEDRALAMGYKPKAYLRDFIYVSQDP 203


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.316    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,886,380
Number of extensions: 1004290
Number of successful extensions: 3203
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3186
Number of HSP's successfully gapped: 8
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007731
         (976 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005882.2| acetyl-CoA acetyltransferase, cytosolic [Homo s...   532   e-151
Alignment   gi|NP_000010.1| acetyl-CoA acetyltransferase, mitochondrial pre...   219   3e-57
Alignment   gi|NP_006102.2| 3-ketoacyl-CoA thiolase, mitochondrial [Homo sa...   201   6e-52
Alignment   gi|NP_001598.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform a ...   155   7e-38
Alignment   gi|NP_000174.1| trifunctional enzyme subunit beta, mitochondria...   111   1e-24
Alignment   gi|NP_001123882.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform...   100   3e-21

>ref|NP_005882.2| acetyl-CoA acetyltransferase, cytosolic [Homo sapiens].
          Length = 397

 Score =  532 bits (1371), Expect = e-151
 Identities = 265/305 (86%), Positives = 283/305 (92%)
 Frame = +1

Query: 58  MSAGSDPVVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
           M+AGSDPVVIVSAART+IGSFNGAL+ VPV DLGSTVI+EVLKRA V P++VSEVIFGHV
Sbjct: 1   MNAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHV 60

Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
           L AGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLA Q+IG+GDS IVVAGGME
Sbjct: 61  LAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGME 120

Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
           NMSKAPHL +LRTGV++GE  LTDSILCDGLTDAFHN HMGITAENVAKKWQVSREDQD+
Sbjct: 121 NMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDK 180

Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLT 777
           +A LSQ+RTE AQKAGHFDKEIVPV VS+RKG+ EVKTDEFPR GS +EAMSKLKPYFLT
Sbjct: 181 VAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLT 240

Query: 778 DGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
           DGTGTVTPANASGINDGAAAVVLMKKSEA+ RGLTPLA IVSWSQ  VEPSIMG GPIPA
Sbjct: 241 DGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPA 300

Query: 958 IKQAV 972
           IKQAV
Sbjct: 301 IKQAV 305


>ref|NP_000010.1| acetyl-CoA acetyltransferase, mitochondrial precursor [Homo
           sapiens].
          Length = 427

 Score =  219 bits (558), Expect = 3e-57
 Identities = 125/293 (42%), Positives = 177/293 (60%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           VVIVSA RT IGSF G+LS +P   LGS  I+  +++A +  +EV E   G+VL  G GQ
Sbjct: 42  VVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQ 101

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 438
            P RQA +GAG+P S P  +   +C SG+KA+ +A+Q++  G   ++VAGGME+MS  P+
Sbjct: 102 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPY 161

Query: 439 LVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 618
           +++ R     G   L D I+ DGLTD ++  HMG  AEN AKK  ++R +QD  A  S  
Sbjct: 162 VMN-RGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSYT 220

Query: 619 RTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTVT 798
           R++ A +AG F  E++PV V+ +     V  ++          + KLK  F  +  GTVT
Sbjct: 221 RSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKE-NGTVT 279

Query: 799 PANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPA 957
            ANAS +NDGAAA+VLM    A+   +TPLA IV+++ A+VEP      P+ A
Sbjct: 280 AANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYA 332


>ref|NP_006102.2| 3-ketoacyl-CoA thiolase, mitochondrial [Homo sapiens].
          Length = 397

 Score =  201 bits (512), Expect = 6e-52
 Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 2/300 (0%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           V +V+A RT  G++ G L      DL     +  L    V P+ V  VI G+VL +    
Sbjct: 7   VFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDA 66

Query: 259 NPV-RQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAP 435
             + R   +  GIP   PA +   +CGSG +++    Q I V ++ +V+ GG E+MS+AP
Sbjct: 67  IYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQAP 126

Query: 436 HLV-HLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALS 612
           + V ++R G +LG     +  L   LTD      M +TAEN+A K ++SRE+ D+ A  S
Sbjct: 127 YCVRNVRFGTKLGSDIKLEDSLWVSLTDQHVQLPMAMTAENLAVKHKISREECDKYALQS 186

Query: 613 QDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGT 792
           Q R + A  AG+F+ E+ P+ V ++KG   ++ DE  RP +TLE + KL P F  D  GT
Sbjct: 187 QQRWKAANDAGYFNDEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLQKLPPVFKKD--GT 244

Query: 793 VTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMGTGPIPAIKQAV 972
           VT  NASG+ DGA AV++  +   +    TPLA IV +  +  +PSIMG GP+PAI  A+
Sbjct: 245 VTAGNASGVADGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPSIMGIGPVPAISGAL 304


>ref|NP_001598.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform a [Homo sapiens].
          Length = 424

 Score =  155 bits (391), Expect = 7e-38
 Identities = 115/311 (36%), Positives = 162/311 (52%), Gaps = 8/311 (2%)
 Frame = +1

Query: 64  AGSDPVVIVSAARTVI--GSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
           A +  VV+V   RT I      G   T P  +L S V+  VLK  N+ P+++ ++  G+V
Sbjct: 33  ASAADVVVVHGRRTAICRAGRGGFKDTTP-DELLSAVMTAVLKDVNLRPEQLGDICVGNV 91

Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
           L  G G    R A   + IP +VP  +    C SGL+AV   A  I  G   I +A G+E
Sbjct: 92  LQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVE 151

Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
           +MS A          RL E       L            MGIT+ENVA+++ +SRE QD 
Sbjct: 152 SMSLADRGNPGNITSRLMEKEKARDCLIP----------MGITSENVAERFGISREKQDT 201

Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKL 759
            A  SQ +  +AQ  G F  EIVPV  +      +++ +T V  DE  RP +T+E ++KL
Sbjct: 202 FALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSIT-VTQDEGIRPSTTMEGLAKL 260

Query: 760 KPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEPSIMG 939
           KP F  D  G+ T  N+S ++DGAAA++L ++S+AE  GL  L  + S++   V P IMG
Sbjct: 261 KPAFKKD--GSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMG 318

Query: 940 TGPIPAIKQAV 972
            GP  AI  A+
Sbjct: 319 IGPAYAIPVAL 329


>ref|NP_000174.1| trifunctional enzyme subunit beta, mitochondrial precursor [Homo
           sapiens].
          Length = 474

 Score =  111 bits (277), Expect = 1e-24
 Identities = 91/300 (30%), Positives = 142/300 (47%), Gaps = 17/300 (5%)
 Frame = +1

Query: 79  VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 258
           VV+V   RT       +   +  HDL    +  +L R +V  + V  +IFG V+      
Sbjct: 54  VVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTS 113

Query: 259 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 438
           N  R+A++GAG     PA +  M C S  +A+      I  G   ++VAGG+E MS  P 
Sbjct: 114 NVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPI 173

Query: 439 ---------LVHLRTGVRLGEAALTDSIL--------CDGLTDAFHNYHMGITAENVAKK 567
                    ++ L     +G+     S             +++   +  MG +A+ +A  
Sbjct: 174 RHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAA 233

Query: 568 WQVSREDQDRLAALSQDRTEKAQKAGHFDKEIVPVFVSSRKGVTEVKTDEFPRPGSTLEA 747
           + VSR +QD  A  S    +KAQ  G    ++VP  V  +  VT+   D   RP S+LE 
Sbjct: 234 FAVSRLEQDEYALRSHSLAKKAQDEGLLS-DVVPFKVPGKDTVTK---DNGIRP-SSLEQ 288

Query: 748 MSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQASVEP 927
           M+KLKP F+    GTVT AN+S + DGA+A+++M + +A   G  P A++  +   S +P
Sbjct: 289 MAKLKPAFIKP-YGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFMYVSQDP 347


>ref|NP_001123882.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform b [Homo sapiens].
          Length = 331

 Score =  100 bits (248), Expect = 3e-21
 Identities = 91/294 (30%), Positives = 133/294 (45%), Gaps = 14/294 (4%)
 Frame = +1

Query: 64  AGSDPVVIVSAARTVI--GSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHV 237
           A +  VV+V   RT I      G   T P  +L S V+  VLK  N+ P+++ ++  G+V
Sbjct: 33  ASAADVVVVHGRRTAICRAGRGGFKDTTP-DELLSAVMTAVLKDVNLRPEQLGDICVGNV 91

Query: 238 LTAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGME 417
           L  G G    R A   + IP +VP  +    C SGL+AV               +AGG+ 
Sbjct: 92  LQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVAS-------------IAGGIR 138

Query: 418 NMSKAPHLVHLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDR 597
           N S             +G A                    GIT+ENVA+++ +SRE QD 
Sbjct: 139 NGS-----------YDIGMAC-------------------GITSENVAERFGISREKQDT 168

Query: 598 LAALSQDRTEKAQKAGHFDKEIVPVFVS------SRKGVTEVKTDEFPRPGSTLEAMSKL 759
            A  SQ +  +AQ  G F  EIVPV  +      +++ +T V  DE  RP +T+E ++KL
Sbjct: 169 FALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSIT-VTQDEGIRPSTTMEGLAKL 227

Query: 760 KPYFLTDGTG----TVTPANASGINDGAA--AVVLMKKSEAENRGLTPLAHIVS 903
           KP F  DG+     TV+  +   IN+  A  A   ++K       + PL   V+
Sbjct: 228 KPAFKKDGSTTAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVA 281


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.316    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,177,510
Number of extensions: 1194978
Number of successful extensions: 3777
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3763
Number of HSP's successfully gapped: 8
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007731
         (976 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                         363   1e-97

>Sscrofa_Chr01 
||          Length = 315321322

 Score =  363 bits (183), Expect = 1e-97
 Identities = 186/187 (99%)
 Strand = Plus / Minus

                                                                           
Query: 244     gcaggttgtgggcagaatcccgttcgacaagccagtgtgggggcaggaatcccctactct 303
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9407407 gcaggttgtgggcagaatcccgttcgacaagccagtgtgggggcaggaatcccctactct 9407348

                                                                           
Query: 304     gttccggcctggagctgccagatgatctgtgggtcaggcctgaaggccgtgtgcctcgct 363
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 9407347 gttccggcctggagctgccagatgatctgtgggtcaggcctgaaggccgtgtgcctcgcc 9407288

                                                                           
Query: 364     gcccaggccataggggtgggagactcccgcattgtggtcgcaggaggcatggaaaacatg 423
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9407287 gcccaggccataggggtgggagactcccgcattgtggtcgcaggaggcatggaaaacatg 9407228

                      
Query: 424     agcaagg 430
               |||||||
Sbjct: 9407227 agcaagg 9407221



 Score =  301 bits (152), Expect = 4e-79
 Identities = 158/160 (98%)
 Strand = Plus / Minus

                                                                           
Query: 812     caggaattaatgatggtgctgctgctgtggttcttatgaagaagtcggaggctgagaacc 871
               |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9402002 caggaattaatgatggtgctgctgctgtggttcttatgaagaagtcagaggctgagaacc 9401943

                                                                           
Query: 872     gcgggcttactcctttagcacacatagtttcctggtcacaagcaagcgtggagccttcca 931
               |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9401942 gcgggcttactcctttagcacacatagtttcctggtcacaagcaggcgtggagccttcca 9401883

                                                       
Query: 932     tcatgggaacaggcccaatcccggcaataaagcaagctgt 971
               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9401882 tcatgggaacaggcccaatcccggcaataaagcaagctgt 9401843



 Score =  301 bits (152), Expect = 4e-79
 Identities = 152/152 (100%)
 Strand = Plus / Minus

                                                                           
Query: 543     cacagctgaaaacgtagccaaaaaatggcaagtgagtagagaagatcaggacaggcttgc 602
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9404179 cacagctgaaaacgtagccaaaaaatggcaagtgagtagagaagatcaggacaggcttgc 9404120

                                                                           
Query: 603     cgctctgtcccaggacaggacggagaaggcacagaaagctggccattttgacaaagagat 662
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9404119 cgctctgtcccaggacaggacggagaaggcacagaaagctggccattttgacaaagagat 9404060

                                               
Query: 663     tgtgccggtttttgtatcttctagaaaaggtg 694
               ||||||||||||||||||||||||||||||||
Sbjct: 9404059 tgtgccggtttttgtatcttctagaaaaggtg 9404028



 Score =  278 bits (140), Expect = 5e-72
 Identities = 140/140 (100%)
 Strand = Plus / Minus

                                                                           
Query: 110     taggctccttcaatggtgctttgtccaccgttcctgtccatgacctgggctcgactgtca 169
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9410947 taggctccttcaatggtgctttgtccaccgttcctgtccatgacctgggctcgactgtca 9410888

                                                                           
Query: 170     tcagagaggtcctgaagagggccaatgtggatcccaaggaggtatcagaggtcatatttg 229
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9410887 tcagagaggtcctgaagagggccaatgtggatcccaaggaggtatcagaggtcatatttg 9410828

                                   
Query: 230     gacacgttttgacagcaggt 249
               ||||||||||||||||||||
Sbjct: 9410827 gacacgttttgacagcaggt 9410808



 Score =  250 bits (126), Expect = 1e-63
 Identities = 126/126 (100%)
 Strand = Plus / Minus

                                                                           
Query: 690     aggtgtcaccgaagtgaaaaccgatgagtttcctcgccccgggagcaccctagaagccat 749
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9402780 aggtgtcaccgaagtgaaaaccgatgagtttcctcgccccgggagcaccctagaagccat 9402721

                                                                           
Query: 750     gtctaagctaaagccttactttctcacagatgggacaggaacagtcaccccagctaatgc 809
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9402720 gtctaagctaaagccttactttctcacagatgggacaggaacagtcaccccagctaatgc 9402661

                     
Query: 810     ctcagg 815
               ||||||
Sbjct: 9402660 ctcagg 9402655



 Score =  230 bits (116), Expect = 1e-57
 Identities = 119/120 (99%)
 Strand = Plus / Minus

                                                                           
Query: 428     aggcccctcacttggttcacctgaggaccggcgtcaggctcggggaggccgcgctcactg 487
               |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9405281 aggcccctcacttggttcgcctgaggaccggcgtcaggctcggggaggccgcgctcactg 9405222

                                                                           
Query: 488     acagcatcctctgtgatgggctgacagatgcgtttcacaactaccacatgggcatcacag 547
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9405221 acagcatcctctgtgatgggctgacagatgcgtttcacaactaccacatgggcatcacag 9405162



 Score =  198 bits (100), Expect = 4e-48
 Identities = 109/112 (97%)
 Strand = Plus / Minus

                                                                           
Query: 2       ctcgctcgcggcgtggagtccacacgagctccggaggagctcgattgtgcagaaggatga 61
               ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct: 9411769 ctcgctcgcggcgtggagtccacaccagctcgggaggagctcgactgtgcagaaggatga 9411710

                                                                   
Query: 62      gtgcaggctcggaccccgtggtcatcgtctcggcggcgcggaccgtcatagg 113
               ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9411709 gtgcaggctcggaccccgtggtcatcgtctcggcggcgcggaccgtcatagg 9411658


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,211,229
Number of extensions: 118
Number of successful extensions: 118
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 7
Length of query: 976
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 955
Effective length of database: 2,808,413,156
Effective search space: 2682034563980
Effective search space used: 2682034563980
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)