Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007732
(1179 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091527.1| antigen peptide transporter 1 [Bos taurus]. 224 1e-58
Alignment gi|NP_001178284.1| ATP-binding cassette sub-family B member 9 [... 68 1e-11
Alignment gi|XP_002694526.1| PREDICTED: ATP-binding cassette, sub-family ... 68 1e-11
Alignment gi|XP_002694525.1| PREDICTED: ATP-binding cassette, sub-family ... 68 1e-11
Alignment gi|XP_001790070.1| PREDICTED: ATP-binding cassette, sub-family ... 68 1e-11
Alignment gi|NP_776647.1| transporter 2, ATP-binding cassette, sub-family... 52 8e-07
>ref|NP_001091527.1| antigen peptide transporter 1 [Bos taurus].
Length = 749
Score = 224 bits (571), Expect = 1e-58
Identities = 126/236 (53%), Positives = 142/236 (60%), Gaps = 4/236 (1%)
Frame = +1
Query: 436 RVWVVGLSRWAVLWLGARSVLRATVGFREKSTGLRGWXXXXXXXXXXXXXXXXXXXXFRE 615
RVWV GLSR A+LWLGAR V+ A +GFR +ST + GW FRE
Sbjct: 56 RVWVAGLSRCALLWLGARGVVGAALGFRRESTRVLGWLAVLEPLAAALGLALPGLALFRE 115
Query: 616 LGSGAA----DSTRLLHWGSRXXXXXXXXXXXXXXXXXXXXXSSLWVQGSHRGSGVTVSR 783
L S A DS LHW R SLWVQG+ G+ +SR
Sbjct: 116 LVSWRAPEDADSAGHLHWEGRLDAFAFSYWAALPAATLWYKIRSLWVQGARGAFGLAMSR 175
Query: 784 LLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILI 963
LL LG E H GEMAIPFFTGRLTDWI++D AAFTQN+TLMS+L
Sbjct: 176 LLVFLGPEKSHVQFILALVFLSCFGEMAIPFFTGRLTDWIVQDETAAAFTQNVTLMSVLT 235
Query: 964 IASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPSRGTED 1131
IAS+VLEF DGIYNSTMGRVHSHLQGEVF++VLRQETEFFQKNQTG I SR T+D
Sbjct: 236 IASAVLEFAADGIYNSTMGRVHSHLQGEVFQAVLRQETEFFQKNQTGEITSRVTDD 291
>ref|NP_001178284.1| ATP-binding cassette sub-family B member 9 [Bos taurus].
Length = 727
Score = 68.2 bits (165), Expect = 1e-11
Identities = 39/125 (31%), Positives = 63/125 (50%)
Frame = +1
Query: 757 RGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQ 936
+ SG T+ +LL +I GE +P++TGR D I+ + F+
Sbjct: 172 QASGATLQKLLSYTKPDIAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMEQFSA 231
Query: 937 NLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPS 1116
+ +M +L I SS + GI+ R++ L+ +FRS++ QET FF +N+TG + S
Sbjct: 232 AVIVMCVLAIGSSFAAGIRGGIFTLIFARLNIRLRNRLFRSLVSQETSFFDENRTGDLIS 291
Query: 1117 RGTED 1131
R T D
Sbjct: 292 RLTSD 296
>ref|XP_002694526.1| PREDICTED: ATP-binding cassette, sub-family B (MDR/TAP), member 9
isoform 2 [Bos taurus].
Length = 727
Score = 68.2 bits (165), Expect = 1e-11
Identities = 39/125 (31%), Positives = 63/125 (50%)
Frame = +1
Query: 757 RGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQ 936
+ SG T+ +LL +I GE +P++TGR D I+ + F+
Sbjct: 172 QASGATLQKLLSYTKPDIAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMEQFSA 231
Query: 937 NLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPS 1116
+ +M +L I SS + GI+ R++ L+ +FRS++ QET FF +N+TG + S
Sbjct: 232 AVIVMCVLAIGSSFAAGIRGGIFTLIFARLNIRLRNRLFRSLVSQETSFFDENRTGDLIS 291
Query: 1117 RGTED 1131
R T D
Sbjct: 292 RLTSD 296
>ref|XP_002694525.1| PREDICTED: ATP-binding cassette, sub-family B (MDR/TAP), member 9
isoform 1 [Bos taurus].
Length = 770
Score = 68.2 bits (165), Expect = 1e-11
Identities = 39/125 (31%), Positives = 63/125 (50%)
Frame = +1
Query: 757 RGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQ 936
+ SG T+ +LL +I GE +P++TGR D I+ + F+
Sbjct: 172 QASGATLQKLLSYTKPDIAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMEQFSA 231
Query: 937 NLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPS 1116
+ +M +L I SS + GI+ R++ L+ +FRS++ QET FF +N+TG + S
Sbjct: 232 AVIVMCVLAIGSSFAAGIRGGIFTLIFARLNIRLRNRLFRSLVSQETSFFDENRTGDLIS 291
Query: 1117 RGTED 1131
R T D
Sbjct: 292 RLTSD 296
>ref|XP_001790070.1| PREDICTED: ATP-binding cassette, sub-family B (MDR/TAP), member 9
isoform 1 [Bos taurus].
Length = 770
Score = 68.2 bits (165), Expect = 1e-11
Identities = 39/125 (31%), Positives = 63/125 (50%)
Frame = +1
Query: 757 RGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQ 936
+ SG T+ +LL +I GE +P++TGR D I+ + F+
Sbjct: 172 QASGATLQKLLSYTKPDIAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMEQFSA 231
Query: 937 NLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPS 1116
+ +M +L I SS + GI+ R++ L+ +FRS++ QET FF +N+TG + S
Sbjct: 232 AVIVMCVLAIGSSFAAGIRGGIFTLIFARLNIRLRNRLFRSLVSQETSFFDENRTGDLIS 291
Query: 1117 RGTED 1131
R T D
Sbjct: 292 RLTSD 296
>ref|NP_776647.1| transporter 2, ATP-binding cassette, sub-family B [Bos taurus].
Length = 719
Score = 52.4 bits (124), Expect = 8e-07
Identities = 28/92 (30%), Positives = 49/92 (53%)
Frame = +1
Query: 856 GEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSH 1035
GE IP++ GR+ D + D AF + + + + SS+ I+ TM R++
Sbjct: 164 GETVIPYYFGRVIDILGGDFDPDAFASAIFFVCLFSVGSSLCAGCRGSIFTFTMSRINLR 223
Query: 1036 LQGEVFRSVLRQETEFFQKNQTGAIPSRGTED 1131
++ +F S+L Q+ FFQ+ +TG + SR + D
Sbjct: 224 IREMLFSSLLHQDLPFFQETKTGELNSRLSSD 255
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,673,556
Number of extensions: 1274530
Number of successful extensions: 8144
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8096
Number of HSP's successfully gapped: 6
Length of query: 393
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 289
Effective length of database: 14,240,222
Effective search space: 4115424158
Effective search space used: 4115424158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007732
(1179 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858668.1| PREDICTED: similar to ATP-binding cassette, sub... 65 1e-10
Alignment gi|XP_534654.2| PREDICTED: similar to ATP-binding cassette, sub... 65 1e-10
Alignment gi|XP_849373.1| PREDICTED: similar to ATP-binding cassette, sub... 65 1e-10
Alignment gi|XP_532101.2| PREDICTED: similar to Antigen peptide transport... 54 2e-07
Alignment gi|XP_532099.2| PREDICTED: similar to transporter 2, ATP-bindin... 53 5e-07
>ref|XP_858668.1| PREDICTED: similar to ATP-binding cassette, sub-family B, member 9
precursor (ATP-binding cassette transporter 9) (ABC
transporter 9 protein) (TAP-like protein) (TAPL) (hABCB9)
isoform 4 [Canis familiaris].
Length = 766
Score = 65.1 bits (157), Expect = 1e-10
Identities = 37/125 (29%), Positives = 62/125 (49%)
Frame = +1
Query: 757 RGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQ 936
+ SG T+ +LL ++ GE +P++TGR D I+ + F+
Sbjct: 168 QASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMEQFST 227
Query: 937 NLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPS 1116
+ +M +L I SS + GI+ R++ L+ +FRS++ QE FF +N+TG + S
Sbjct: 228 AVIVMCLLAIGSSFAAGIRGGIFTLIFARLNIRLRNRLFRSLVSQEMSFFDENRTGDLIS 287
Query: 1117 RGTED 1131
R T D
Sbjct: 288 RLTSD 292
>ref|XP_534654.2| PREDICTED: similar to ATP-binding cassette, sub-family B (MDR/TAP),
member 9 isoform 2 isoform 1 [Canis familiaris].
Length = 723
Score = 65.1 bits (157), Expect = 1e-10
Identities = 37/125 (29%), Positives = 62/125 (49%)
Frame = +1
Query: 757 RGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQ 936
+ SG T+ +LL ++ GE +P++TGR D I+ + F+
Sbjct: 168 QASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMEQFST 227
Query: 937 NLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPS 1116
+ +M +L I SS + GI+ R++ L+ +FRS++ QE FF +N+TG + S
Sbjct: 228 AVIVMCLLAIGSSFAAGIRGGIFTLIFARLNIRLRNRLFRSLVSQEMSFFDENRTGDLIS 287
Query: 1117 RGTED 1131
R T D
Sbjct: 288 RLTSD 292
>ref|XP_849373.1| PREDICTED: similar to ATP-binding cassette, sub-family B, member 9
precursor (ATP-binding cassette transporter 9) (ABC
transporter 9 protein) (TAP-like protein) (TAPL) (hABCB9)
isoform 3 [Canis familiaris].
Length = 775
Score = 65.1 bits (157), Expect = 1e-10
Identities = 37/125 (29%), Positives = 62/125 (49%)
Frame = +1
Query: 757 RGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQ 936
+ SG T+ +LL ++ GE +P++TGR D I+ + F+
Sbjct: 168 QASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMEQFST 227
Query: 937 NLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPS 1116
+ +M +L I SS + GI+ R++ L+ +FRS++ QE FF +N+TG + S
Sbjct: 228 AVIVMCLLAIGSSFAAGIRGGIFTLIFARLNIRLRNRLFRSLVSQEMSFFDENRTGDLIS 287
Query: 1117 RGTED 1131
R T D
Sbjct: 288 RLTSD 292
>ref|XP_532101.2| PREDICTED: similar to Antigen peptide transporter 1 (APT1) (Peptide
transporter TAP1) (ATP-binding cassette, sub-family B,
member 2) (Peptide transporter PSF1) (Peptide supply
factor 1) (PSF-1) (Peptide transporter involved in
antigen processing 1)... [Canis familiaris].
Length = 505
Score = 54.3 bits (129), Expect = 2e-07
Identities = 25/35 (71%), Positives = 26/35 (74%)
Frame = +2
Query: 1001 SITAPWAACTATCRERCFGLSCAKKQSFFRRIKQV 1105
SITA W CTA CRER F LSCA+KQSF R KQV
Sbjct: 3 SITASWVVCTARCRERYFRLSCARKQSFSNRTKQV 37
>ref|XP_532099.2| PREDICTED: similar to transporter 2, ATP-binding cassette, sub-family
B isoform 1 [Canis familiaris].
Length = 791
Score = 53.1 bits (126), Expect = 5e-07
Identities = 29/92 (31%), Positives = 49/92 (53%)
Frame = +1
Query: 856 GEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSH 1035
GE IP+++GR+ D + D AF + M + I SS+ + M R +
Sbjct: 253 GETVIPYYSGRVIDILRGDFNPDAFATAIFFMCLFSIGSSLCAGCRGSCFTFIMSRTNVR 312
Query: 1036 LQGEVFRSVLRQETEFFQKNQTGAIPSRGTED 1131
++ ++F S+LRQ+ FFQ+ +TG + SR + D
Sbjct: 313 VREQLFSSLLRQDLGFFQETKTGELNSRLSSD 344
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,561,472
Number of extensions: 1314923
Number of successful extensions: 8768
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8699
Number of HSP's successfully gapped: 5
Length of query: 393
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 288
Effective length of database: 15,374,224
Effective search space: 4427776512
Effective search space used: 4427776512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007732
(1179 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128377.2| PREDICTED: antigen peptide transporter 1 iso... 434 e-122
Alignment gi|NP_001038046.1| antigen peptide transporter 1 [Sus scrofa]. 353 8e-98
Alignment gi|XP_001928626.1| PREDICTED: ATP-binding cassette sub-family B... 67 2e-11
Alignment gi|XP_003128373.1| PREDICTED: antigen peptide transporter 2 [Su... 51 1e-06
Alignment gi|NP_001193370.1| antigen peptide transporter 2 [Sus scrofa]. 51 1e-06
>ref|XP_003128377.2| PREDICTED: antigen peptide transporter 1 isoform 1 [Sus scrofa].
Length = 822
Score = 434 bits (1117), Expect = e-122
Identities = 244/377 (64%), Positives = 244/377 (64%)
Frame = +1
Query: 1 VRAGRLGEVGGSSEXXXXXXXXXXXTACFQLAEAVQVGXXXXXXXXXXXXXXXXXLRVRA 180
VRAGRLGE LAEAVQVG LRVRA
Sbjct: 9 VRAGRLGE----------------------LAEAVQVGSRDFPRSPPRPAPGPSPLRVRA 46
Query: 181 CSGTHSDSIQRIQPSRDSESPRPGVDLVRPMASSGSSAPCGCLCVSRXXXXXXXXXXXXX 360
CSGTHSDSIQRIQPSRDSESPRPGVDLVRPMASSGSSAPCGCLCVSR
Sbjct: 47 CSGTHSDSIQRIQPSRDSESPRPGVDLVRPMASSGSSAPCGCLCVSRASLPWLGAALLLL 106
Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXRVWVVGLSRWAVLWLGARSVLRATVGFREKSTGLR 540
RVWVVGLSRWAVLWLGARSVLRATVGFREKSTGLR
Sbjct: 107 ADWVLLRPALPRISSLLLPPALPLLRVWVVGLSRWAVLWLGARSVLRATVGFREKSTGLR 166
Query: 541 GWXXXXXXXXXXXXXXXXXXXXFRELGSGAADSTRLLHWGSRXXXXXXXXXXXXXXXXXX 720
GW FRELGSGAADSTRLLHWGSR
Sbjct: 167 GWLAALEPLAAALGLALPGLALFRELGSGAADSTRLLHWGSRLDAFALSYAAALPAAALW 226
Query: 721 XXXSSLWVQGSHRGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDW 900
SSLWVQGSHRGSGVTVSRLLGCLGSEIRH GEMAIPFFTGRLTDW
Sbjct: 227 HKLSSLWVQGSHRGSGVTVSRLLGCLGSEIRHLWLLLTLVVLSSLGEMAIPFFTGRLTDW 286
Query: 901 ILRDGAGAAFTQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETE 1080
ILRDGAGAAFTQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETE
Sbjct: 287 ILRDGAGAAFTQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETE 346
Query: 1081 FFQKNQTGAIPSRGTED 1131
FFQKNQTGAI SR TED
Sbjct: 347 FFQKNQTGAITSRVTED 363
>ref|NP_001038046.1| antigen peptide transporter 1 [Sus scrofa].
Length = 746
Score = 353 bits (907), Expect = 8e-98
Identities = 192/287 (66%), Positives = 192/287 (66%)
Frame = +1
Query: 271 MASSGSSAPCGCLCVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVWVV 450
MASSGSSAPCGCLCVSR RVWVV
Sbjct: 1 MASSGSSAPCGCLCVSRASLPWLGAALLLLADWVLLRPALPRISSLLLPPALPLLRVWVV 60
Query: 451 GLSRWAVLWLGARSVLRATVGFREKSTGLRGWXXXXXXXXXXXXXXXXXXXXFRELGSGA 630
GLSRWAVLWLGARSVLRATVGFREKSTGLRGW FRELGSGA
Sbjct: 61 GLSRWAVLWLGARSVLRATVGFREKSTGLRGWLAALEPLAAALGLALPGLALFRELGSGA 120
Query: 631 ADSTRLLHWGSRXXXXXXXXXXXXXXXXXXXXXSSLWVQGSHRGSGVTVSRLLGCLGSEI 810
ADSTRLLHWGSR SSLWVQGSHRGSGVTVSRLLGCLGSEI
Sbjct: 121 ADSTRLLHWGSRLDAFALSYAAALPAAALWHKLSSLWVQGSHRGSGVTVSRLLGCLGSEI 180
Query: 811 RHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILIIASSVLEFV 990
RH GEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILIIASSVLEFV
Sbjct: 181 RHLWLLLTLVVLSSLGEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILIIASSVLEFV 240
Query: 991 CDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPSRGTED 1131
CDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTG I SR TED
Sbjct: 241 CDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGTITSRVTED 287
>ref|XP_001928626.1| PREDICTED: ATP-binding cassette sub-family B member 9 [Sus scrofa].
Length = 768
Score = 67.0 bits (162), Expect = 2e-11
Identities = 39/127 (30%), Positives = 63/127 (49%)
Frame = +1
Query: 751 SHRGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAF 930
+ + SG T+ +LL +I GE +P++TGR D I+ + F
Sbjct: 168 AEQASGATLQKLLSYTKPDIAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMEQF 227
Query: 931 TQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAI 1110
+ + +M L I SS + GI+ R++ L+ +FRS++ QET FF +N+TG +
Sbjct: 228 STAVIVMCALAIGSSFAAGIRGGIFTLIFARLNIRLRNRLFRSLVSQETSFFDENRTGDL 287
Query: 1111 PSRGTED 1131
SR T D
Sbjct: 288 ISRLTSD 294
>ref|XP_003128373.1| PREDICTED: antigen peptide transporter 2 [Sus scrofa].
Length = 726
Score = 51.2 bits (121), Expect = 1e-06
Identities = 27/92 (29%), Positives = 49/92 (53%)
Frame = +1
Query: 856 GEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSH 1035
GE IP+++G + D + D AF + MS+ + SS+ + M R++
Sbjct: 165 GETLIPYYSGLVIDILGGDFDPDAFVSAILFMSLFSVGSSLSAGCRGSAFTLVMSRINLR 224
Query: 1036 LQGEVFRSVLRQETEFFQKNQTGAIPSRGTED 1131
++ ++F S+L Q+ FFQ+ +TG + SR + D
Sbjct: 225 VREQLFSSLLHQDLAFFQETKTGELNSRLSSD 256
>ref|NP_001193370.1| antigen peptide transporter 2 [Sus scrofa].
Length = 726
Score = 51.2 bits (121), Expect = 1e-06
Identities = 27/92 (29%), Positives = 49/92 (53%)
Frame = +1
Query: 856 GEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSH 1035
GE IP+++G + D + D AF + MS+ + SS+ + M R++
Sbjct: 165 GETLIPYYSGLVIDILGGDFDPDAFVSAILFMSLFSVGSSLSAGCRGSAFTLVMSRINLR 224
Query: 1036 LQGEVFRSVLRQETEFFQKNQTGAIPSRGTED 1131
++ ++F S+L Q+ FFQ+ +TG + SR + D
Sbjct: 225 VREQLFSSLLHQDLAFFQETKTGELNSRLSSD 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,297,142
Number of extensions: 829948
Number of successful extensions: 5240
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5208
Number of HSP's successfully gapped: 5
Length of query: 393
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,829,335
Effective search space: 2578165820
Effective search space used: 2578165820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007732
(1179 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155202.1| antigen peptide transporter 1 isoform 2 [Mus... 176 3e-44
Alignment gi|NP_038711.2| antigen peptide transporter 1 isoform 1 [Mus mu... 176 3e-44
Alignment gi|NP_063928.2| ATP-binding cassette sub-family B member 9 prec... 67 3e-11
Alignment gi|NP_035660.3| antigen peptide transporter 2 [Mus musculus]. 53 4e-07
>ref|NP_001155202.1| antigen peptide transporter 1 isoform 2 [Mus musculus].
Length = 696
Score = 176 bits (446), Expect = 3e-44
Identities = 104/236 (44%), Positives = 122/236 (51%), Gaps = 4/236 (1%)
Frame = +1
Query: 436 RVWVVGLSRWAVLWLGARSVLRATVGFREKSTGLRGWXXXXXXXXXXXXXXXXXXXXFRE 615
RVWVVGLSRWA+L LG R VL T G GW FRE
Sbjct: 39 RVWVVGLSRWAILGLGVRGVLGVTAG-------AHGWLAALQPLVAALSLALPGLALFRE 91
Query: 616 LGSGAA----DSTRLLHWGSRXXXXXXXXXXXXXXXXXXXXXSSLWVQGSHRGSGVTVSR 783
L + DS LL+W SR SLW +R +G + R
Sbjct: 92 LAAWGTLREGDSAGLLYWNSRPDAFAISYVAALPAAALWHKLGSLWAPSGNRDAGDMLCR 151
Query: 784 LLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILI 963
+LG LG + R GEMAIPFFTGR+TDWIL+D +FT+N+ LMSIL
Sbjct: 152 MLGFLGPKKRRLYLVLVLLILSCLGEMAIPFFTGRITDWILQDKTVPSFTRNIWLMSILT 211
Query: 964 IASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPSRGTED 1131
IAS+ LEF DGIYN TMG +H + EVFR+VLRQET FF KN G+I SR TED
Sbjct: 212 IASTALEFASDGIYNITMGHMHGRVHREVFRAVLRQETGFFLKNPAGSITSRVTED 267
>ref|NP_038711.2| antigen peptide transporter 1 isoform 1 [Mus musculus].
Length = 724
Score = 176 bits (446), Expect = 3e-44
Identities = 104/236 (44%), Positives = 122/236 (51%), Gaps = 4/236 (1%)
Frame = +1
Query: 436 RVWVVGLSRWAVLWLGARSVLRATVGFREKSTGLRGWXXXXXXXXXXXXXXXXXXXXFRE 615
RVWVVGLSRWA+L LG R VL T G GW FRE
Sbjct: 39 RVWVVGLSRWAILGLGVRGVLGVTAG-------AHGWLAALQPLVAALSLALPGLALFRE 91
Query: 616 LGSGAA----DSTRLLHWGSRXXXXXXXXXXXXXXXXXXXXXSSLWVQGSHRGSGVTVSR 783
L + DS LL+W SR SLW +R +G + R
Sbjct: 92 LAAWGTLREGDSAGLLYWNSRPDAFAISYVAALPAAALWHKLGSLWAPSGNRDAGDMLCR 151
Query: 784 LLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILI 963
+LG LG + R GEMAIPFFTGR+TDWIL+D +FT+N+ LMSIL
Sbjct: 152 MLGFLGPKKRRLYLVLVLLILSCLGEMAIPFFTGRITDWILQDKTVPSFTRNIWLMSILT 211
Query: 964 IASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPSRGTED 1131
IAS+ LEF DGIYN TMG +H + EVFR+VLRQET FF KN G+I SR TED
Sbjct: 212 IASTALEFASDGIYNITMGHMHGRVHREVFRAVLRQETGFFLKNPAGSITSRVTED 267
>ref|NP_063928.2| ATP-binding cassette sub-family B member 9 precursor [Mus musculus].
Length = 762
Score = 67.0 bits (162), Expect = 3e-11
Identities = 38/127 (29%), Positives = 65/127 (51%)
Frame = +1
Query: 751 SHRGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAF 930
+ + SG T+ +LL ++ GE +P++TGR D I+ + F
Sbjct: 162 AEQASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDSIVIQKSMDQF 221
Query: 931 TQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAI 1110
T + ++ +L I SS+ + GI+ R++ L+ +FRS++ QET FF +N+TG +
Sbjct: 222 TTAVVVVCLLAIGSSLAAGIRGGIFTLVFARLNIRLRNCLFRSLVSQETSFFDENRTGDL 281
Query: 1111 PSRGTED 1131
SR T D
Sbjct: 282 ISRLTSD 288
>ref|NP_035660.3| antigen peptide transporter 2 [Mus musculus].
Length = 702
Score = 53.1 bits (126), Expect = 4e-07
Identities = 30/92 (32%), Positives = 50/92 (54%)
Frame = +1
Query: 856 GEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSH 1035
GE IP ++GR+ D + D AF + M + + SS G + TM R++
Sbjct: 164 GETLIPRYSGRVIDILGGDFDPDAFASAIFFMCLFSVGSSFSAGCRGGSFLFTMSRINLR 223
Query: 1036 LQGEVFRSVLRQETEFFQKNQTGAIPSRGTED 1131
++ ++F S+LRQ+ FFQ+ +TG + SR + D
Sbjct: 224 IREQLFSSLLRQDLGFFQETKTGELNSRLSSD 255
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,346,325
Number of extensions: 1046775
Number of successful extensions: 6214
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6137
Number of HSP's successfully gapped: 4
Length of query: 393
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 290
Effective length of database: 12,523,851
Effective search space: 3631916790
Effective search space used: 3631916790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007732
(1179 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000584.2| antigen peptide transporter 1 [Homo sapiens]. 265 8e-71
Alignment gi|NP_062570.1| ATP-binding cassette sub-family B member 9 isof... 65 2e-10
Alignment gi|NP_062571.1| ATP-binding cassette sub-family B member 9 isof... 65 2e-10
Alignment gi|NP_001229943.1| ATP-binding cassette sub-family B member 9 i... 65 2e-10
Alignment gi|NP_001229942.1| ATP-binding cassette sub-family B member 9 i... 65 2e-10
Alignment gi|NP_982269.2| ATP-binding cassette sub-family B member 9 isof... 65 2e-10
Alignment gi|NP_061313.2| antigen peptide transporter 2 isoform 2 [Homo s... 55 1e-07
Alignment gi|NP_000535.3| antigen peptide transporter 2 isoform 1 [Homo s... 55 1e-07
>ref|NP_000584.2| antigen peptide transporter 1 [Homo sapiens].
Length = 808
Score = 265 bits (676), Expect = 8e-71
Identities = 158/312 (50%), Positives = 173/312 (55%), Gaps = 7/312 (2%)
Frame = +1
Query: 217 QPSRDSESPRPGVDL--VR-PMASSGSSAPCGCLCVSRXXXXXXXXXXXXXXXXXXXXXX 387
+P R +ESPRPG D VR PMASS AP GC C+
Sbjct: 40 RPHRGAESPRPGRDRDGVRVPMASSRCPAPRGCRCLPGASLAWLGTVLLLLADWVLLRTA 99
Query: 388 XXXXXXXXXXXXXXXXRVWVVGLSRWAVLWLGARSVLRATVGFREKSTGLRGWXXXXXXX 567
RVW VGLSRWAVLWLGA VLRATVG + ++ G +GW
Sbjct: 100 LPRIFSLLVPTALPLLRVWAVGLSRWAVLWLGACGVLRATVGSKSENAGAQGWLAALKPL 159
Query: 568 XXXXXXXXXXXXXFRELGS----GAADSTRLLHWGSRXXXXXXXXXXXXXXXXXXXXXSS 735
FREL S G+ADSTRLLHWGS S
Sbjct: 160 AAALGLALPGLALFRELISWGAPGSADSTRLLHWGSHPTAFVVSYAAALPAAALWHKLGS 219
Query: 736 LWVQGSHRGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDG 915
LWV G GSG V RLLGCLGSE R GEMAIPFFTGRLTDWIL+DG
Sbjct: 220 LWVPGGQGGSGNPVRRLLGCLGSETRRLSLFLVLVVLSSLGEMAIPFFTGRLTDWILQDG 279
Query: 916 AGAAFTQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKN 1095
+ FT+NLTLMSIL IAS+VLEFV DGIYN+TMG VHSHLQGEVF +VLRQETEFFQ+N
Sbjct: 280 SADTFTRNLTLMSILTIASAVLEFVGDGIYNNTMGHVHSHLQGEVFGAVLRQETEFFQQN 339
Query: 1096 QTGAIPSRGTED 1131
QTG I SR TED
Sbjct: 340 QTGNIMSRVTED 351
>ref|NP_062570.1| ATP-binding cassette sub-family B member 9 isoform 2 [Homo sapiens].
Length = 723
Score = 64.7 bits (156), Expect = 2e-10
Identities = 37/125 (29%), Positives = 63/125 (50%)
Frame = +1
Query: 757 RGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQ 936
+ SG T+ +LL ++ GE +P++TGR D I+ + F+
Sbjct: 168 QASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMDQFST 227
Query: 937 NLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPS 1116
+ ++ +L I SS + GI+ R++ L+ +FRS++ QET FF +N+TG + S
Sbjct: 228 AVVIVCLLAIGSSFAAGIRGGIFTLIFARLNIRLRNCLFRSLVSQETSFFDENRTGDLIS 287
Query: 1117 RGTED 1131
R T D
Sbjct: 288 RLTSD 292
>ref|NP_062571.1| ATP-binding cassette sub-family B member 9 isoform 1 [Homo sapiens].
Length = 766
Score = 64.7 bits (156), Expect = 2e-10
Identities = 37/125 (29%), Positives = 63/125 (50%)
Frame = +1
Query: 757 RGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQ 936
+ SG T+ +LL ++ GE +P++TGR D I+ + F+
Sbjct: 168 QASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMDQFST 227
Query: 937 NLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPS 1116
+ ++ +L I SS + GI+ R++ L+ +FRS++ QET FF +N+TG + S
Sbjct: 228 AVVIVCLLAIGSSFAAGIRGGIFTLIFARLNIRLRNCLFRSLVSQETSFFDENRTGDLIS 287
Query: 1117 RGTED 1131
R T D
Sbjct: 288 RLTSD 292
>ref|NP_001229943.1| ATP-binding cassette sub-family B member 9 isoform 5 [Homo sapiens].
Length = 681
Score = 64.7 bits (156), Expect = 2e-10
Identities = 37/125 (29%), Positives = 63/125 (50%)
Frame = +1
Query: 757 RGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQ 936
+ SG T+ +LL ++ GE +P++TGR D I+ + F+
Sbjct: 168 QASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMDQFST 227
Query: 937 NLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPS 1116
+ ++ +L I SS + GI+ R++ L+ +FRS++ QET FF +N+TG + S
Sbjct: 228 AVVIVCLLAIGSSFAAGIRGGIFTLIFARLNIRLRNCLFRSLVSQETSFFDENRTGDLIS 287
Query: 1117 RGTED 1131
R T D
Sbjct: 288 RLTSD 292
>ref|NP_001229942.1| ATP-binding cassette sub-family B member 9 isoform 6 [Homo sapiens].
Length = 703
Score = 64.7 bits (156), Expect = 2e-10
Identities = 37/125 (29%), Positives = 63/125 (50%)
Frame = +1
Query: 757 RGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQ 936
+ SG T+ +LL ++ GE +P++TGR D I+ + F+
Sbjct: 168 QASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMDQFST 227
Query: 937 NLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPS 1116
+ ++ +L I SS + GI+ R++ L+ +FRS++ QET FF +N+TG + S
Sbjct: 228 AVVIVCLLAIGSSFAAGIRGGIFTLIFARLNIRLRNCLFRSLVSQETSFFDENRTGDLIS 287
Query: 1117 RGTED 1131
R T D
Sbjct: 288 RLTSD 292
>ref|NP_982269.2| ATP-binding cassette sub-family B member 9 isoform 4 [Homo sapiens].
Length = 683
Score = 64.7 bits (156), Expect = 2e-10
Identities = 37/125 (29%), Positives = 63/125 (50%)
Frame = +1
Query: 757 RGSGVTVSRLLGCLGSEIRHXXXXXXXXXXXXXGEMAIPFFTGRLTDWILRDGAGAAFTQ 936
+ SG T+ +LL ++ GE +P++TGR D I+ + F+
Sbjct: 168 QASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQKSMDQFST 227
Query: 937 NLTLMSILIIASSVLEFVCDGIYNSTMGRVHSHLQGEVFRSVLRQETEFFQKNQTGAIPS 1116
+ ++ +L I SS + GI+ R++ L+ +FRS++ QET FF +N+TG + S
Sbjct: 228 AVVIVCLLAIGSSFAAGIRGGIFTLIFARLNIRLRNCLFRSLVSQETSFFDENRTGDLIS 287
Query: 1117 RGTED 1131
R T D
Sbjct: 288 RLTSD 292
>ref|NP_061313.2| antigen peptide transporter 2 isoform 2 [Homo sapiens].
Length = 653
Score = 55.1 bits (131), Expect = 1e-07
Identities = 30/92 (32%), Positives = 50/92 (54%)
Frame = +1
Query: 856 GEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSH 1035
GE IP ++GR+ D + D AF + M + SS+ G + TM R++
Sbjct: 165 GETLIPHYSGRVIDILGGDFDPHAFASAIFFMCLFSFGSSLSAGCRGGCFTYTMSRINLR 224
Query: 1036 LQGEVFRSVLRQETEFFQKNQTGAIPSRGTED 1131
++ ++F S+LRQ+ FFQ+ +TG + SR + D
Sbjct: 225 IREQLFSSLLRQDLGFFQETKTGELNSRLSSD 256
>ref|NP_000535.3| antigen peptide transporter 2 isoform 1 [Homo sapiens].
Length = 703
Score = 55.1 bits (131), Expect = 1e-07
Identities = 30/92 (32%), Positives = 50/92 (54%)
Frame = +1
Query: 856 GEMAIPFFTGRLTDWILRDGAGAAFTQNLTLMSILIIASSVLEFVCDGIYNSTMGRVHSH 1035
GE IP ++GR+ D + D AF + M + SS+ G + TM R++
Sbjct: 165 GETLIPHYSGRVIDILGGDFDPHAFASAIFFMCLFSFGSSLSAGCRGGCFTYTMSRINLR 224
Query: 1036 LQGEVFRSVLRQETEFFQKNQTGAIPSRGTED 1131
++ ++F S+LRQ+ FFQ+ +TG + SR + D
Sbjct: 225 IREQLFSSLLRQDLGFFQETKTGELNSRLSSD 256
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,509,724
Number of extensions: 1272041
Number of successful extensions: 7574
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7513
Number of HSP's successfully gapped: 9
Length of query: 393
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 288
Effective length of database: 14,835,944
Effective search space: 4272751872
Effective search space used: 4272751872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007732
(1179 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1699 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1699 bits (857), Expect = 0.0
Identities = 857/857 (100%)
Strand = Plus / Minus
Query: 1 gtccgggctggccgccttggggaagtgggcgggtctagtgagccggcggccgctttcgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283540 gtccgggctggccgccttggggaagtgggcgggtctagtgagccggcggccgctttcgtt 29283481
Query: 61 ttccctttcccataaaccgcttgcttccagctcgctgaggcggtccaggtcggttcccgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283480 ttccctttcccataaaccgcttgcttccagctcgctgaggcggtccaggtcggttcccgg 29283421
Query: 121 gactttccgagatccccgccccggcccgcccctggaccctccccgctgcgggtccgggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283420 gactttccgagatccccgccccggcccgcccctggaccctccccgctgcgggtccgggcc 29283361
Query: 181 tgctcgggcacccactccgacagcatccagagaatccagcccagcagggatagcgagagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283360 tgctcgggcacccactccgacagcatccagagaatccagcccagcagggatagcgagagc 29283301
Query: 241 cccaggccgggggtcgacctcgtacggccaatggccagctcggggtcctccgctccctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283300 cccaggccgggggtcgacctcgtacggccaatggccagctcggggtcctccgctccctgc 29283241
Query: 301 gggtgtctctgcgtctcccgagcttccctcccttggctgggggcagcgctgctgcttctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283240 gggtgtctctgcgtctcccgagcttccctcccttggctgggggcagcgctgctgcttctc 29283181
Query: 361 gccgactgggtgctgctccggccggcgctgccccggatatcctccctgctgctgccccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283180 gccgactgggtgctgctccggccggcgctgccccggatatcctccctgctgctgccccca 29283121
Query: 421 gcgctgccgctgctccgggtctgggtggtgggcctgagccgttgggctgtgctgtggttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283120 gcgctgccgctgctccgggtctgggtggtgggcctgagccgttgggctgtgctgtggttg 29283061
Query: 481 ggggcccgcagcgtcctcagggcgacggttggcttccgggagaaaagcacaggacttcgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283060 ggggcccgcagcgtcctcagggcgacggttggcttccgggagaaaagcacaggacttcgg 29283001
Query: 541 ggatggctggcagctttggagccgctggcggcggctctgggcttggctctgccgggactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283000 ggatggctggcagctttggagccgctggcggcggctctgggcttggctctgccgggactt 29282941
Query: 601 gccttgttccgagagttgggctcgggagcggctgacagcacgcggctactgcactggggg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29282940 gccttgttccgagagttgggctcgggagcggctgacagcacgcggctactgcactggggg 29282881
Query: 661 agtcgcctcgatgccttcgccctcagctatgcggcggcattgcccgcggccgccctgtgg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29282880 agtcgcctcgatgccttcgccctcagctatgcggcggcattgcccgcggccgccctgtgg 29282821
Query: 721 cataagcttagcagcctttgggtgcaaggaagtcacagaggctctggagtgacagtgagc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29282820 cataagcttagcagcctttgggtgcaaggaagtcacagaggctctggagtgacagtgagc 29282761
Query: 781 cggcttctcggctgcctgggctcagagatccgccacctctggctccttctgaccctggtg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29282760 cggcttctcggctgcctgggctcagagatccgccacctctggctccttctgaccctggtg 29282701
Query: 841 gtcctctccagccttgg 857
|||||||||||||||||
Sbjct: 29282700 gtcctctccagccttgg 29282684
Score = 1699 bits (857), Expect = 0.0
Identities = 857/857 (100%)
Strand = Plus / Minus
Query: 1 gtccgggctggccgccttggggaagtgggcgggtctagtgagccggcggccgctttcgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438661 gtccgggctggccgccttggggaagtgggcgggtctagtgagccggcggccgctttcgtt 29438602
Query: 61 ttccctttcccataaaccgcttgcttccagctcgctgaggcggtccaggtcggttcccgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438601 ttccctttcccataaaccgcttgcttccagctcgctgaggcggtccaggtcggttcccgg 29438542
Query: 121 gactttccgagatccccgccccggcccgcccctggaccctccccgctgcgggtccgggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438541 gactttccgagatccccgccccggcccgcccctggaccctccccgctgcgggtccgggcc 29438482
Query: 181 tgctcgggcacccactccgacagcatccagagaatccagcccagcagggatagcgagagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438481 tgctcgggcacccactccgacagcatccagagaatccagcccagcagggatagcgagagc 29438422
Query: 241 cccaggccgggggtcgacctcgtacggccaatggccagctcggggtcctccgctccctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438421 cccaggccgggggtcgacctcgtacggccaatggccagctcggggtcctccgctccctgc 29438362
Query: 301 gggtgtctctgcgtctcccgagcttccctcccttggctgggggcagcgctgctgcttctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438361 gggtgtctctgcgtctcccgagcttccctcccttggctgggggcagcgctgctgcttctc 29438302
Query: 361 gccgactgggtgctgctccggccggcgctgccccggatatcctccctgctgctgccccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438301 gccgactgggtgctgctccggccggcgctgccccggatatcctccctgctgctgccccca 29438242
Query: 421 gcgctgccgctgctccgggtctgggtggtgggcctgagccgttgggctgtgctgtggttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438241 gcgctgccgctgctccgggtctgggtggtgggcctgagccgttgggctgtgctgtggttg 29438182
Query: 481 ggggcccgcagcgtcctcagggcgacggttggcttccgggagaaaagcacaggacttcgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438181 ggggcccgcagcgtcctcagggcgacggttggcttccgggagaaaagcacaggacttcgg 29438122
Query: 541 ggatggctggcagctttggagccgctggcggcggctctgggcttggctctgccgggactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438121 ggatggctggcagctttggagccgctggcggcggctctgggcttggctctgccgggactt 29438062
Query: 601 gccttgttccgagagttgggctcgggagcggctgacagcacgcggctactgcactggggg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438061 gccttgttccgagagttgggctcgggagcggctgacagcacgcggctactgcactggggg 29438002
Query: 661 agtcgcctcgatgccttcgccctcagctatgcggcggcattgcccgcggccgccctgtgg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438001 agtcgcctcgatgccttcgccctcagctatgcggcggcattgcccgcggccgccctgtgg 29437942
Query: 721 cataagcttagcagcctttgggtgcaaggaagtcacagaggctctggagtgacagtgagc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29437941 cataagcttagcagcctttgggtgcaaggaagtcacagaggctctggagtgacagtgagc 29437882
Query: 781 cggcttctcggctgcctgggctcagagatccgccacctctggctccttctgaccctggtg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29437881 cggcttctcggctgcctgggctcagagatccgccacctctggctccttctgaccctggtg 29437822
Query: 841 gtcctctccagccttgg 857
|||||||||||||||||
Sbjct: 29437821 gtcctctccagccttgg 29437805
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 970 agctcggtgctggagttcgtgtgcgacgggatctataacagcaccatgggccgcgtgcac 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29281972 agctcggtgctggagttcgtgtgcgacgggatctataacagcaccatgggccgcgtgcac 29281913
Query: 1030 agccacctgcagggagaggtgtttcggtctgtcctgcgccaagaaacagagttttttcag 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29281912 agccacctgcagggagaggtgtttcggtctgtcctgcgccaagaaacagagttttttcag 29281853
Query: 1090 aagaatcaaacaggtg 1105
||||||||||||||||
Sbjct: 29281852 aagaatcaaacaggtg 29281837
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 970 agctcggtgctggagttcgtgtgcgacgggatctataacagcaccatgggccgcgtgcac 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29437093 agctcggtgctggagttcgtgtgcgacgggatctataacagcaccatgggccgcgtgcac 29437034
Query: 1030 agccacctgcagggagaggtgtttcggtctgtcctgcgccaagaaacagagttttttcag 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29437033 agccacctgcagggagaggtgtttcggtctgtcctgcgccaagaaacagagttttttcag 29436974
Query: 1090 aagaatcaaacaggtg 1105
||||||||||||||||
Sbjct: 29436973 aagaatcaaacaggtg 29436958
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 856 ggggagatggccattccgttcttcacaggccggctcactgactggattctacgagatggg 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29282220 ggggagatggccattccgttcttcacaggccggctcactgactggattctacgagatggg 29282161
Query: 916 gcaggtgctgccttcacgcagaacctaactctcatgtccatcctcatcatagccag 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29282160 gcaggtgctgccttcacgcagaacctaactctcatgtccatcctcatcatagccag 29282105
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 856 ggggagatggccattccgttcttcacaggccggctcactgactggattctacgagatggg 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29437341 ggggagatggccattccgttcttcacaggccggctcactgactggattctacgagatggg 29437282
Query: 916 gcaggtgctgccttcacgcagaacctaactctcatgtccatcctcatcatagccag 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29437281 gcaggtgctgccttcacgcagaacctaactctcatgtccatcctcatcatagccag 29437226
Score = 119 bits (60), Expect = 4e-24
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1100 caggtgccatcccatctcggggtacagaagacacatccactgtgagtgtgtctctgagtt 1159
||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 29280307 caggtgccatcacatctcgggtaacagaggacacatccactgtgagtgtgtctctgagtt 29280248
Query: 1160 cggagctgaacctcttgctg 1179
||||||||| ||||||||||
Sbjct: 29280247 cggagctgagcctcttgctg 29280228
Score = 119 bits (60), Expect = 4e-24
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1100 caggtgccatcccatctcggggtacagaagacacatccactgtgagtgtgtctctgagtt 1159
||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 29435430 caggtgccatcacatctcgggtaacagaggacacatccactgtgagtgtgtctctgagtt 29435371
Query: 1160 cggagctgaacctcttgctg 1179
||||||||| ||||||||||
Sbjct: 29435370 cggagctgagcctcttgctg 29435351
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,402,145
Number of extensions: 199
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 8
Length of query: 1179
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1158
Effective length of database: 2,808,413,156
Effective search space: 3252142434648
Effective search space used: 3252142434648
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)