Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007733
(1037 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091527.1| antigen peptide transporter 1 [Bos taurus]. 79 5e-15
>ref|NP_001091527.1| antigen peptide transporter 1 [Bos taurus].
Length = 749
Score = 79.3 bits (194), Expect = 5e-15
Identities = 51/131 (38%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Frame = +3
Query: 363 RVWVVGLSRWAVLWLGARSVLRATVGFREKSTGLRGWXXXXXXXXXXXXXXXXXXXXFRE 542
RVWV GLSR A+LWLGAR V+ A +GFR +ST + GW FRE
Sbjct: 56 RVWVAGLSRCALLWLGARGVVGAALGFRRESTRVLGWLAVLEPLAAALGLALPGLALFRE 115
Query: 543 LGSGA----ADSTRLLHWGSRXXXXXXXXXXXXXXXXXXXXXSSLWVQGSHRGSGVTVSR 710
L S ADS LHW R SLWVQG+ G+ +SR
Sbjct: 116 LVSWRAPEDADSAGHLHWEGRLDAFAFSYWAALPAATLWYKIRSLWVQGARGAFGLAMSR 175
Query: 711 LLGCLGSEIRH 743
LL LG E H
Sbjct: 176 LLVFLGPEKSH 186
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,722,719
Number of extensions: 842425
Number of successful extensions: 5681
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5648
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007733
(1037 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,545,898
Number of extensions: 780104
Number of successful extensions: 6222
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 6175
Number of HSP's successfully gapped: 0
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007733
(1037 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128377.2| PREDICTED: antigen peptide transporter 1 iso... 263 2e-70
Alignment gi|NP_001038046.1| antigen peptide transporter 1 [Sus scrofa]. 185 4e-47
>ref|XP_003128377.2| PREDICTED: antigen peptide transporter 1 isoform 1 [Sus scrofa].
Length = 822
Score = 263 bits (671), Expect = 2e-70
Identities = 146/243 (60%), Positives = 147/243 (60%)
Frame = +3
Query: 15 QLAEAVQVGXXXXXXXXXXXXXXXXXLRVRACSGTHSDSIQRIQPSRDSESPRPGVDLVR 194
+LAEAVQVG LRVRACSGTHSDSIQRIQPSRDSESPRPGVDLVR
Sbjct: 16 ELAEAVQVGSRDFPRSPPRPAPGPSPLRVRACSGTHSDSIQRIQPSRDSESPRPGVDLVR 75
Query: 195 PMASSGSSAPCGCLCVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVWV 374
PMASSGSSAPCGCLCVSR RVWV
Sbjct: 76 PMASSGSSAPCGCLCVSRASLPWLGAALLLLADWVLLRPALPRISSLLLPPALPLLRVWV 135
Query: 375 VGLSRWAVLWLGARSVLRATVGFREKSTGLRGWXXXXXXXXXXXXXXXXXXXXFRELGSG 554
VGLSRWAVLWLGARSVLRATVGFREKSTGLRGW FRELGSG
Sbjct: 136 VGLSRWAVLWLGARSVLRATVGFREKSTGLRGWLAALEPLAAALGLALPGLALFRELGSG 195
Query: 555 AADSTRLLHWGSRXXXXXXXXXXXXXXXXXXXXXSSLWVQGSHRGSGVTVSRLLGCLGSE 734
AADSTRLLHWGSR SSLWVQGSHRGSGVTVSRLLGCLGSE
Sbjct: 196 AADSTRLLHWGSRLDAFALSYAAALPAAALWHKLSSLWVQGSHRGSGVTVSRLLGCLGSE 255
Query: 735 IRH 743
IRH
Sbjct: 256 IRH 258
>ref|NP_001038046.1| antigen peptide transporter 1 [Sus scrofa].
Length = 746
Score = 185 bits (469), Expect = 4e-47
Identities = 103/182 (56%), Positives = 103/182 (56%)
Frame = +3
Query: 198 MASSGSSAPCGCLCVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVWVV 377
MASSGSSAPCGCLCVSR RVWVV
Sbjct: 1 MASSGSSAPCGCLCVSRASLPWLGAALLLLADWVLLRPALPRISSLLLPPALPLLRVWVV 60
Query: 378 GLSRWAVLWLGARSVLRATVGFREKSTGLRGWXXXXXXXXXXXXXXXXXXXXFRELGSGA 557
GLSRWAVLWLGARSVLRATVGFREKSTGLRGW FRELGSGA
Sbjct: 61 GLSRWAVLWLGARSVLRATVGFREKSTGLRGWLAALEPLAAALGLALPGLALFRELGSGA 120
Query: 558 ADSTRLLHWGSRXXXXXXXXXXXXXXXXXXXXXSSLWVQGSHRGSGVTVSRLLGCLGSEI 737
ADSTRLLHWGSR SSLWVQGSHRGSGVTVSRLLGCLGSEI
Sbjct: 121 ADSTRLLHWGSRLDAFALSYAAALPAAALWHKLSSLWVQGSHRGSGVTVSRLLGCLGSEI 180
Query: 738 RH 743
RH
Sbjct: 181 RH 182
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,726,172
Number of extensions: 678270
Number of successful extensions: 3550
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3528
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007733
(1037 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155202.1| antigen peptide transporter 1 isoform 2 [Mus... 63 4e-10
Alignment gi|NP_038711.2| antigen peptide transporter 1 isoform 1 [Mus mu... 63 4e-10
>ref|NP_001155202.1| antigen peptide transporter 1 isoform 2 [Mus musculus].
Length = 696
Score = 62.8 bits (151), Expect = 4e-10
Identities = 43/130 (33%), Positives = 51/130 (39%), Gaps = 4/130 (3%)
Frame = +3
Query: 363 RVWVVGLSRWAVLWLGARSVLRATVGFREKSTGLRGWXXXXXXXXXXXXXXXXXXXXFRE 542
RVWVVGLSRWA+L LG R VL T G GW FRE
Sbjct: 39 RVWVVGLSRWAILGLGVRGVLGVT-------AGAHGWLAALQPLVAALSLALPGLALFRE 91
Query: 543 LGSGA----ADSTRLLHWGSRXXXXXXXXXXXXXXXXXXXXXSSLWVQGSHRGSGVTVSR 710
L + DS LL+W SR SLW +R +G + R
Sbjct: 92 LAAWGTLREGDSAGLLYWNSRPDAFAISYVAALPAAALWHKLGSLWAPSGNRDAGDMLCR 151
Query: 711 LLGCLGSEIR 740
+LG LG + R
Sbjct: 152 MLGFLGPKKR 161
>ref|NP_038711.2| antigen peptide transporter 1 isoform 1 [Mus musculus].
Length = 724
Score = 62.8 bits (151), Expect = 4e-10
Identities = 43/130 (33%), Positives = 51/130 (39%), Gaps = 4/130 (3%)
Frame = +3
Query: 363 RVWVVGLSRWAVLWLGARSVLRATVGFREKSTGLRGWXXXXXXXXXXXXXXXXXXXXFRE 542
RVWVVGLSRWA+L LG R VL T G GW FRE
Sbjct: 39 RVWVVGLSRWAILGLGVRGVLGVT-------AGAHGWLAALQPLVAALSLALPGLALFRE 91
Query: 543 LGSGA----ADSTRLLHWGSRXXXXXXXXXXXXXXXXXXXXXSSLWVQGSHRGSGVTVSR 710
L + DS LL+W SR SLW +R +G + R
Sbjct: 92 LAAWGTLREGDSAGLLYWNSRPDAFAISYVAALPAAALWHKLGSLWAPSGNRDAGDMLCR 151
Query: 711 LLGCLGSEIR 740
+LG LG + R
Sbjct: 152 MLGFLGPKKR 161
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,724,984
Number of extensions: 610298
Number of successful extensions: 4080
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4038
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007733
(1037 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000584.2| antigen peptide transporter 1 [Homo sapiens]. 124 2e-28
>ref|NP_000584.2| antigen peptide transporter 1 [Homo sapiens].
Length = 808
Score = 124 bits (310), Expect = 2e-28
Identities = 83/206 (40%), Positives = 91/206 (44%), Gaps = 7/206 (3%)
Frame = +3
Query: 144 QPSRDSESPRPGVDL--VR-PMASSGSSAPCGCLCVSRXXXXXXXXXXXXXXXXXXXXXX 314
+P R +ESPRPG D VR PMASS AP GC C+
Sbjct: 40 RPHRGAESPRPGRDRDGVRVPMASSRCPAPRGCRCLPGASLAWLGTVLLLLADWVLLRTA 99
Query: 315 XXXXXXXXXXXXXXXXRVWVVGLSRWAVLWLGARSVLRATVGFREKSTGLRGWXXXXXXX 494
RVW VGLSRWAVLWLGA VLRATVG + ++ G +GW
Sbjct: 100 LPRIFSLLVPTALPLLRVWAVGLSRWAVLWLGACGVLRATVGSKSENAGAQGWLAALKPL 159
Query: 495 XXXXXXXXXXXXXFRELGS----GAADSTRLLHWGSRXXXXXXXXXXXXXXXXXXXXXSS 662
FREL S G+ADSTRLLHWGS S
Sbjct: 160 AAALGLALPGLALFRELISWGAPGSADSTRLLHWGSHPTAFVVSYAAALPAAALWHKLGS 219
Query: 663 LWVQGSHRGSGVTVSRLLGCLGSEIR 740
LWV G GSG V RLLGCLGSE R
Sbjct: 220 LWVPGGQGGSGNPVRRLLGCLGSETR 245
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,769,099
Number of extensions: 744286
Number of successful extensions: 5134
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5099
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007733
(1037 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1550 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1550 bits (782), Expect = 0.0
Identities = 785/786 (99%)
Strand = Plus / Minus
Query: 1 aaaccgcttgcttccagctcgctgaggcggtccaggtcggttcccgggactttccgagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283467 aaaccgcttgcttccagctcgctgaggcggtccaggtcggttcccgggactttccgagat 29283408
Query: 61 ccccgccccggcccgcccctggaccctccccgctgcgggtccgggcctgctcgggcaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283407 ccccgccccggcccgcccctggaccctccccgctgcgggtccgggcctgctcgggcaccc 29283348
Query: 121 actccgacagcatccagagaatccagcccagcagggatagcgagagccccaggccggggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283347 actccgacagcatccagagaatccagcccagcagggatagcgagagccccaggccggggg 29283288
Query: 181 tcgacctcgtacggccaatggccagctcggggtcctccgctccctgcgggtgtctctgcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283287 tcgacctcgtacggccaatggccagctcggggtcctccgctccctgcgggtgtctctgcg 29283228
Query: 241 tctcccgagcttccctcccttggctgggggcagcgctgctgcttctcgccgactgggtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283227 tctcccgagcttccctcccttggctgggggcagcgctgctgcttctcgccgactgggtgc 29283168
Query: 301 tgctccggccggcgctgccccggatatcctccctgctgctgcccccagcgctgccgctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283167 tgctccggccggcgctgccccggatatcctccctgctgctgcccccagcgctgccgctgc 29283108
Query: 361 tccgggtctgggtggtgggcctgagccgttgggctgtgctgtggttgggggcccgcagcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283107 tccgggtctgggtggtgggcctgagccgttgggctgtgctgtggttgggggcccgcagcg 29283048
Query: 421 tcctcagggcgacggttggcttccgggagaaaagcacaggacttcggggatggctggcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29283047 tcctcagggcgacggttggcttccgggagaaaagcacaggacttcggggatggctggcag 29282988
Query: 481 ctttggagccgctggcggcggctctgggcttggctctgccgggacttgccttgttccgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29282987 ctttggagccgctggcggcggctctgggcttggctctgccgggacttgccttgttccgag 29282928
Query: 541 agttgggctcgggagcggctgacagcacgcggctactgcactgggggagtcgcctcgatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29282927 agttgggctcgggagcggctgacagcacgcggctactgcactgggggagtcgcctcgatg 29282868
Query: 601 ccttcgccctcagctatgcagcggcattgcccgcggccgccctgtggcataagcttagca 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 29282867 ccttcgccctcagctatgcggcggcattgcccgcggccgccctgtggcataagcttagca 29282808
Query: 661 gcctttgggtgcaaggaagtcacagaggctctggagtgacagtgagccggcttctcggct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29282807 gcctttgggtgcaaggaagtcacagaggctctggagtgacagtgagccggcttctcggct 29282748
Query: 721 gcctgggctcagagatccgccacctctggctccttctgaccctggtggtcctctccagcc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29282747 gcctgggctcagagatccgccacctctggctccttctgaccctggtggtcctctccagcc 29282688
Query: 781 ttggta 786
||||||
Sbjct: 29282687 ttggta 29282682
Score = 1550 bits (782), Expect = 0.0
Identities = 785/786 (99%)
Strand = Plus / Minus
Query: 1 aaaccgcttgcttccagctcgctgaggcggtccaggtcggttcccgggactttccgagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438588 aaaccgcttgcttccagctcgctgaggcggtccaggtcggttcccgggactttccgagat 29438529
Query: 61 ccccgccccggcccgcccctggaccctccccgctgcgggtccgggcctgctcgggcaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438528 ccccgccccggcccgcccctggaccctccccgctgcgggtccgggcctgctcgggcaccc 29438469
Query: 121 actccgacagcatccagagaatccagcccagcagggatagcgagagccccaggccggggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438468 actccgacagcatccagagaatccagcccagcagggatagcgagagccccaggccggggg 29438409
Query: 181 tcgacctcgtacggccaatggccagctcggggtcctccgctccctgcgggtgtctctgcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438408 tcgacctcgtacggccaatggccagctcggggtcctccgctccctgcgggtgtctctgcg 29438349
Query: 241 tctcccgagcttccctcccttggctgggggcagcgctgctgcttctcgccgactgggtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438348 tctcccgagcttccctcccttggctgggggcagcgctgctgcttctcgccgactgggtgc 29438289
Query: 301 tgctccggccggcgctgccccggatatcctccctgctgctgcccccagcgctgccgctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438288 tgctccggccggcgctgccccggatatcctccctgctgctgcccccagcgctgccgctgc 29438229
Query: 361 tccgggtctgggtggtgggcctgagccgttgggctgtgctgtggttgggggcccgcagcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438228 tccgggtctgggtggtgggcctgagccgttgggctgtgctgtggttgggggcccgcagcg 29438169
Query: 421 tcctcagggcgacggttggcttccgggagaaaagcacaggacttcggggatggctggcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438168 tcctcagggcgacggttggcttccgggagaaaagcacaggacttcggggatggctggcag 29438109
Query: 481 ctttggagccgctggcggcggctctgggcttggctctgccgggacttgccttgttccgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438108 ctttggagccgctggcggcggctctgggcttggctctgccgggacttgccttgttccgag 29438049
Query: 541 agttgggctcgggagcggctgacagcacgcggctactgcactgggggagtcgcctcgatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29438048 agttgggctcgggagcggctgacagcacgcggctactgcactgggggagtcgcctcgatg 29437989
Query: 601 ccttcgccctcagctatgcagcggcattgcccgcggccgccctgtggcataagcttagca 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 29437988 ccttcgccctcagctatgcggcggcattgcccgcggccgccctgtggcataagcttagca 29437929
Query: 661 gcctttgggtgcaaggaagtcacagaggctctggagtgacagtgagccggcttctcggct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29437928 gcctttgggtgcaaggaagtcacagaggctctggagtgacagtgagccggcttctcggct 29437869
Query: 721 gcctgggctcagagatccgccacctctggctccttctgaccctggtggtcctctccagcc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29437868 gcctgggctcagagatccgccacctctggctccttctgaccctggtggtcctctccagcc 29437809
Query: 781 ttggta 786
||||||
Sbjct: 29437808 ttggta 29437803
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 829 taggaatcaagcctaacggtcagtgagatagacaggtgtgagttctcggaaatgtggata 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29282639 taggaatcaagcctaacggtcagtgagatagacaggtgtgagttctcggaaatgtggata 29282580
Query: 889 agagcaagcccaccccgctcaggtccact 917
|||||||||||||||||||||||||||||
Sbjct: 29282579 agagcaagcccaccccgctcaggtccact 29282551
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 829 taggaatcaagcctaacggtcagtgagatagacaggtgtgagttctcggaaatgtggata 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29437760 taggaatcaagcctaacggtcagtgagatagacaggtgtgagttctcggaaatgtggata 29437701
Query: 889 agagcaagcccaccccgctcaggtccact 917
|||||||||||||||||||||||||||||
Sbjct: 29437700 agagcaagcccaccccgctcaggtccact 29437672
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,588,038
Number of extensions: 148
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 4
Length of query: 1037
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1016
Effective length of database: 2,808,413,156
Effective search space: 2853347766496
Effective search space used: 2853347766496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)