Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007734
(1153 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777081.1| tricarboxylate transport protein, mitochondrial... 486 e-137
Alignment gi|NP_001192758.1| solute carrier family 25 member 47 [Bos taur... 87 2e-17
Alignment gi|XP_002696883.1| PREDICTED: carnitine/acylcarnitine transloca... 87 2e-17
Alignment gi|NP_776635.1| mitochondrial uncoupling protein 3 [Bos taurus]. 81 2e-15
Alignment gi|NP_001192769.1| solute carrier family 25 member 45 [Bos taur... 76 5e-14
Alignment gi|XP_002699388.1| PREDICTED: CG4995-like [Bos taurus]. 76 5e-14
Alignment gi|NP_001030386.1| solute carrier family 25 member 48 [Bos taur... 76 6e-14
Alignment gi|NP_001071339.1| mitochondrial carnitine/acylcarnitine carrie... 75 8e-14
Alignment gi|NP_001069309.1| solute carrier family 25 member 41 [Bos taur... 74 2e-13
Alignment gi|NP_001014905.2| solute carrier family 25 member 38 [Bos taur... 74 3e-13
>ref|NP_777081.1| tricarboxylate transport protein, mitochondrial precursor [Bos
taurus].
Length = 311
Score = 486 bits (1251), Expect = e-137
Identities = 245/304 (80%), Positives = 250/304 (82%)
Frame = +1
Query: 142 RALXXXXXXXXKAKLTHPGKXXXXXXXXXXXEICITFPTEYVKTQLQLDERSHPPRYRGI 321
RAL KAKLTHPGK EICITFPTEYVKTQLQLDERSHPPRYRGI
Sbjct: 8 RALTSASPGSGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERSHPPRYRGI 67
Query: 322 GDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFGTFEFLSNHMRDAQGRLDSTRXXXX 501
GDCVRQTVRSHG+ IPKAAVRFGTFEFLSNHMRDAQGRLDSTR
Sbjct: 68 GDCVRQTVRSHGLLGLYRGLSSLLYGSIPKAAVRFGTFEFLSNHMRDAQGRLDSTRGLLC 127
Query: 502 XXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTAT 681
PMETIKVKFIHDQTS++PKYRGFFHGVREIVREQGLKGTYQGLTAT
Sbjct: 128 GLGAGVPEAVVVVCPMETIKVKFIHDQTSASPKYRGFFHGVREIVREQGLKGTYQGLTAT 187
Query: 682 VLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTR 861
VLKQGSNQ IRFFVMT+LRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTR
Sbjct: 188 VLKQGSNQGIRFFVMTSLRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTR 247
Query: 862 MQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKV 1041
MQGLEAHKYRNT DCGLQILRNEGLKAFYKGT+PRLGRVCLDVAIVFIIYDEVVKLLNKV
Sbjct: 248 MQGLEAHKYRNTLDCGLQILRNEGLKAFYKGTVPRLGRVCLDVAIVFIIYDEVVKLLNKV 307
Query: 1042 WKTD 1053
WK D
Sbjct: 308 WKAD 311
>ref|NP_001192758.1| solute carrier family 25 member 47 [Bos taurus].
Length = 312
Score = 87.4 bits (215), Expect = 2e-17
Identities = 78/302 (25%), Positives = 119/302 (39%), Gaps = 38/302 (12%)
Frame = +1
Query: 238 ICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAA 417
+ + +P + VK ++Q + + Y GI DCVR T V ++
Sbjct: 14 VAVGYPLDTVKVRIQTEAK-----YTGIWDCVRDTYHRERVRGFYRGLSLPVCTVSLVSS 68
Query: 418 VRFGTFEFLSNHM-RDAQGRLDST---RXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQT 585
V FGT+ H+ R G D+ P E KV+ + QT
Sbjct: 69 VSFGTYRHCLAHICRVRYGSADAKPAKTDITLSGFASGLVRVFLTSPTEVAKVR-LQTQT 127
Query: 586 SSN------------------------------PKYRGFFHGVREIVREQGLKGTYQGLT 675
+ P+YRG H + + RE+GL+G Y+G +
Sbjct: 128 QAQQRRRPSASGPLVPLAAPPPCPVPPAGSLLGPRYRGPLHCLATVAREEGLRGLYKGSS 187
Query: 676 ATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLITGVF--GAIAGAASVFGNTPLDV 849
A + + G + A F L W P P ++GV G AGA + TP+DV
Sbjct: 188 ALLFRDGHSFATYFLSYATLCEWL---TPAGQSRPDVSGVLVAGGCAGALAWAVATPMDV 244
Query: 850 IKTRMQ--GLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVV 1023
IK R+Q G +YR C L +R EGL+ +KG + R +VF+ Y+ V+
Sbjct: 245 IKARLQADGRGRQRYRGLLHCVLTSVREEGLRVLFKGLLLNCCRAFPVNMVVFVAYEAVL 304
Query: 1024 KL 1029
+L
Sbjct: 305 RL 306
>ref|XP_002696883.1| PREDICTED: carnitine/acylcarnitine translocase-like [Bos taurus].
Length = 312
Score = 87.4 bits (215), Expect = 2e-17
Identities = 78/302 (25%), Positives = 119/302 (39%), Gaps = 38/302 (12%)
Frame = +1
Query: 238 ICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAA 417
+ + +P + VK ++Q + + Y GI DCVR T V ++
Sbjct: 14 VAVGYPLDTVKVRIQTEAK-----YTGIWDCVRDTYHRERVRGFYRGLSLPVCTVSLVSS 68
Query: 418 VRFGTFEFLSNHM-RDAQGRLDST---RXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQT 585
V FGT+ H+ R G D+ P E KV+ + QT
Sbjct: 69 VSFGTYRHCLAHICRVRYGSADAKPAKTDITLSGFASGLVRVFLTSPTEVAKVR-LQTQT 127
Query: 586 SSN------------------------------PKYRGFFHGVREIVREQGLKGTYQGLT 675
+ P+YRG H + + RE+GL+G Y+G +
Sbjct: 128 QAQQRRRPSASGPLVPLAAPPPCPVPPAGPLPGPRYRGPLHCLATVAREEGLRGLYKGSS 187
Query: 676 ATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLITGVF--GAIAGAASVFGNTPLDV 849
A + + G + A F L W P P ++GV G AGA + TP+DV
Sbjct: 188 ALLFRDGHSFATYFLSYATLCEWL---TPAGQSRPDVSGVLVAGGCAGALAWAVATPMDV 244
Query: 850 IKTRMQ--GLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVV 1023
IK R+Q G +YR C L +R EGL+ +KG + R +VF+ Y+ V+
Sbjct: 245 IKARLQADGRGRQRYRGLLHCVLTSVREEGLRVLFKGLLLNCCRAFPVNMVVFVAYEAVL 304
Query: 1024 KL 1029
+L
Sbjct: 305 RL 306
>ref|NP_776635.1| mitochondrial uncoupling protein 3 [Bos taurus].
Length = 311
Score = 80.9 bits (198), Expect = 2e-15
Identities = 62/278 (22%), Positives = 114/278 (41%), Gaps = 12/278 (4%)
Frame = +1
Query: 244 ITFPTEYVKTQLQLDERSHPP------RYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXI 405
+TFP + K +LQ+ + +YRG+ + VR+ G +
Sbjct: 30 LTFPLDTAKVRLQIQGENQAALAARSAQYRGVLGTILTMVRTEGPRSLYSGLVAGLQRQM 89
Query: 406 PKAAVRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKF---IH 576
A++R G ++ + S P + +K++F +H
Sbjct: 90 SFASIRIGLYDSVKQFYTPKGSDHSSIITRILAGCTTGAMAVTCAQPTDVVKIRFQASMH 149
Query: 577 DQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQG---SNQAIRFFVMTALRNWY 747
N KY G R I RE+G++G ++G+ + + + + + ++ Y
Sbjct: 150 TGLGGNRKYSGTMDAYRTIAREEGVRGLWKGILPNITRNAIVNCGEMVTYDIIKEKLLDY 209
Query: 748 RGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRN 927
N P + FGA G + +P+DV+KTR +Y + +DC L+++
Sbjct: 210 HLLTDNFPCH--FVSAFGA--GFCATLVASPVDVVKTRYMNSPPGQYHSPFDCMLKMVTQ 265
Query: 928 EGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKV 1041
EG AFYKG P R+ ++F+ Y+++ + L KV
Sbjct: 266 EGPTAFYKGFTPSFLRLGSWNVVMFVTYEQMKRALMKV 303
>ref|NP_001192769.1| solute carrier family 25 member 45 [Bos taurus].
Length = 288
Score = 76.3 bits (186), Expect = 5e-14
Identities = 70/271 (25%), Positives = 106/271 (39%), Gaps = 14/271 (5%)
Frame = +1
Query: 253 PTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFGT 432
P + VK +LQ YRGI DC+ +T R + +V FG
Sbjct: 22 PFDTVKVRLQTQTT-----YRGIVDCMVKTYRHESLLGFFKGMSFPIASIAVVNSVLFGV 76
Query: 433 FE-----FLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQT---- 585
+ + ++ + + S P + IKV+ + +QT
Sbjct: 77 YSNALLALTATSHQERRAQPPSYTHVFIAGCTGGFLQAYCLAPFDLIKVR-LQNQTEPRA 135
Query: 586 ---SSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGD 756
S P+YRG H I + +G +G ++G A L+ I F L + D
Sbjct: 136 KPGSPPPRYRGPVHCAASIFQAEGPRGLFRGAWALTLRDTPTLGIYFVTYEWLCRQFTPD 195
Query: 757 NPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLEAHKYRNTWDCGLQILRNE 930
++ V G AG S TPLDVIK+RMQ GL+ YR DC + R E
Sbjct: 196 GQTPSSGTVL--VAGGFAGITSWVAATPLDVIKSRMQMAGLKQRAYRGLLDCMVSSARQE 253
Query: 931 GLKAFYKGTIPRLGRVCLDVAIVFIIYDEVV 1023
GL F++G R A+ F+ Y+ ++
Sbjct: 254 GLGVFFRGLTINSARAFPVNAVTFLSYEHLL 284
>ref|XP_002699388.1| PREDICTED: CG4995-like [Bos taurus].
Length = 288
Score = 76.3 bits (186), Expect = 5e-14
Identities = 70/271 (25%), Positives = 106/271 (39%), Gaps = 14/271 (5%)
Frame = +1
Query: 253 PTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFGT 432
P + VK +LQ YRGI DC+ +T R + +V FG
Sbjct: 22 PFDTVKVRLQTQTT-----YRGIVDCMVKTYRHESLLGFFKGMSFPIASIAVVNSVLFGV 76
Query: 433 FE-----FLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQT---- 585
+ + ++ + + S P + IKV+ + +QT
Sbjct: 77 YSNALLALTATSHQERRAQPPSYTHVFIAGCTGGFLQAYCLAPFDLIKVR-LQNQTEPRA 135
Query: 586 ---SSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGD 756
S P+YRG H I + +G +G ++G A L+ I F L + D
Sbjct: 136 KPGSPPPRYRGPVHCAASIFQAEGPRGLFRGAWALTLRDTPTLGIYFVTYEWLCRQFTPD 195
Query: 757 NPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLEAHKYRNTWDCGLQILRNE 930
++ V G AG S TPLDVIK+RMQ GL+ YR DC + R E
Sbjct: 196 GQTPSSGTVL--VAGGFAGITSWVAATPLDVIKSRMQMAGLKQRAYRGLLDCMVSSARQE 253
Query: 931 GLKAFYKGTIPRLGRVCLDVAIVFIIYDEVV 1023
GL F++G R A+ F+ Y+ ++
Sbjct: 254 GLGVFFRGLTINSARAFPVNAVTFLSYEHLL 284
>ref|NP_001030386.1| solute carrier family 25 member 48 [Bos taurus].
Length = 311
Score = 75.9 bits (185), Expect = 6e-14
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 2/142 (1%)
Frame = +1
Query: 595 PKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPM 774
P Y+G H IVR +GL G Y+G +A +L+ + F L +W + P
Sbjct: 156 PAYQGPVHCFATIVRTEGLAGLYRGASAMLLRDVPGYCLYFIPYVFLSDWITPEACAGP- 214
Query: 775 NPLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLEAHKYRNTWDCGLQILRNEGLKAFY 948
+P + G +AGA S TP+DV+K+R+Q G+ +KYR DC Q + EGLK F+
Sbjct: 215 SPCAVWLAGGMAGAISWGTATPMDVVKSRLQADGVYVNKYRGVLDCMSQSYQKEGLKVFF 274
Query: 949 KGTIPRLGRVCLDVAIVFIIYD 1014
+G R A +F+ Y+
Sbjct: 275 RGITVNAVRGFPMSAAMFLGYE 296
>ref|NP_001071339.1| mitochondrial carnitine/acylcarnitine carrier protein CACL [Bos
taurus].
Length = 298
Score = 75.5 bits (184), Expect = 8e-14
Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 3/166 (1%)
Frame = +1
Query: 544 PMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFV 723
P +T+KV+ + Q+ P+YRG H + I++++ + G Y+GL + +L A+ F V
Sbjct: 21 PFDTVKVR-LQVQSVEKPQYRGTLHCFQAIIKQESVLGLYRGLGSPLLGLTFINALVFGV 79
Query: 724 MTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEA---HKYRN 894
N R + P+N + G A AGA P+++ KTR+Q EA YR
Sbjct: 80 QG---NTLRALGRDSPLNQFLAG---AAAGAIQCVICCPMELAKTRLQLQEAGPARTYRG 133
Query: 895 TWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLL 1032
DC QI R EGL+ +G + L R + F+ YD + + L
Sbjct: 134 PLDCLAQIYRQEGLRGVNRGMVSTLLRETPSFGVYFLTYDVLTRAL 179
Score = 68.2 bits (165), Expect = 1e-11
Identities = 64/249 (25%), Positives = 106/249 (42%), Gaps = 3/249 (1%)
Frame = +1
Query: 238 ICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAA 417
+ + P + VK +LQ+ + P+YRG C + ++ V A
Sbjct: 16 VLVGHPFDTVKVRLQV-QSVEKPQYRGTLHCFQAIIKQESVLGLYRGLGSPLLGLTFINA 74
Query: 418 VRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNP 597
+ FG N +R A GR DS PME K + +
Sbjct: 75 LVFGV---QGNTLR-ALGR-DSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQEAGPAR 129
Query: 598 KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMN 777
YRG + +I R++GL+G +G+ +T+L++ + + F L + ++ +
Sbjct: 130 TYRGPLDCLAQIYRQEGLRGVNRGMVSTLLRETPSFGVYFLTYDVLTRALGCEPGDRLLV 189
Query: 778 PLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLE-AHKYRNTWDCGLQILRNEGLKAFY 948
P + + G +G AS P+DV+K+R+Q GL+ A +YR DC Q R EG + F
Sbjct: 190 PKLL-LAGGTSGIASWLSTYPVDVVKSRLQADGLQGAPRYRGIVDCVQQSYREEGWRVFT 248
Query: 949 KGTIPRLGR 975
+G L R
Sbjct: 249 RGLASTLLR 257
Score = 59.7 bits (143), Expect = 5e-09
Identities = 43/171 (25%), Positives = 68/171 (39%)
Frame = +1
Query: 244 ITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVR 423
I P E KT+LQL E YRG DC+ Q R G+ P V
Sbjct: 109 ICCPMELAKTRLQLQEAGPARTYRGPLDCLAQIYRQEGLRGVNRGMVSTLLRETPSFGVY 168
Query: 424 FGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKY 603
F T++ L+ + G P++ +K + D P+Y
Sbjct: 169 FLTYDVLTRALGCEPGDRLLVPKLLLAGGTSGIASWLSTYPVDVVKSRLQADGLQGAPRY 228
Query: 604 RGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGD 756
RG V++ RE+G + +GL +T+L+ A F +T + ++ RG+
Sbjct: 229 RGIVDCVQQSYREEGWRVFTRGLASTLLRAFPVNAATFATVTVVLSYARGE 279
Score = 48.9 bits (115), Expect = 8e-06
Identities = 26/78 (33%), Positives = 37/78 (47%)
Frame = +1
Query: 247 TFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRF 426
T+P + VK++LQ D PRYRGI DCV+Q+ R G P A F
Sbjct: 207 TYPVDVVKSRLQADGLQGAPRYRGIVDCVQQSYREEGWRVFTRGLASTLLRAFPVNAATF 266
Query: 427 GTFEFLSNHMRDAQGRLD 480
T + ++ R + RL+
Sbjct: 267 ATVTVVLSYARGEEARLE 284
>ref|NP_001069309.1| solute carrier family 25 member 41 [Bos taurus].
Length = 349
Score = 73.9 bits (180), Expect = 2e-13
Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%)
Frame = +1
Query: 586 SSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPN 765
SS + G+R +++E G++ ++G VLK AI+F V +N++ G + +
Sbjct: 122 SSKKNFMNLLGGLRSLIQEGGIRSLWRGNGINVLKIAPEYAIKFSVFEQCKNYFCGVHES 181
Query: 766 KPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGLKAF 945
P + G++A A S P++V+KTR+ +Y+ DC QIL EG +A
Sbjct: 182 PPFQERLLA--GSLAVATSQTLINPMEVLKTRLTLRRTGQYKGLLDCARQILEQEGTRAL 239
Query: 946 YKGTIPRLGRV----CLDVAIVFIIYDEVVKLLNKVW 1044
Y+G +P + + C D+A V ++LN +W
Sbjct: 240 YRGYLPNMLGIIPYACTDLA--------VYEMLNCLW 268
>ref|NP_001014905.2| solute carrier family 25 member 38 [Bos taurus].
Length = 306
Score = 73.6 bits (179), Expect = 3e-13
Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 3/260 (1%)
Frame = +1
Query: 253 PTEYVKTQLQ-LDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFG 429
P + +KT+LQ L + R G+ + VR+ +P + FG
Sbjct: 47 PLDLLKTRLQTLQPSARGSRRVGMLALLLNVVRTESPLGLWKGMSPSIVRCVPGVGIYFG 106
Query: 430 TFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRG 609
T L + +G + P+ IK ++ S Y
Sbjct: 107 TLYSLKQYF--LRGHPPTALESIILGAGSRSVAGVCMSPITVIKTRY----ESGRYGYES 160
Query: 610 FFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRN--WYRGDNPNKPMNPL 783
+ +R I +G +G + GLTAT+L+ I + +N +R D + + PL
Sbjct: 161 VYAALRSICHSEGFRGLFSGLTATLLRDAPFSGIYLMFYSQTKNVVLHRTDQLDAVLVPL 220
Query: 784 ITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIP 963
+ G AG + P DVIKT MQ L K+R I ++ GL+ F++G++P
Sbjct: 221 VNFSCGIFAGILASLVTQPADVIKTHMQ-LFPMKFRWIGQSVTLIFKDYGLRGFFQGSVP 279
Query: 964 RLGRVCLDVAIVFIIYDEVV 1023
R R L A+ + +Y+E++
Sbjct: 280 RALRRTLMAAMAWTVYEEMM 299
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,943,721
Number of extensions: 1093708
Number of successful extensions: 4507
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 4314
Number of HSP's successfully gapped: 71
Length of query: 384
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,240,222
Effective search space: 3987262160
Effective search space used: 3987262160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007734
(1153 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850441.1| PREDICTED: similar to Tricarboxylate transport ... 490 e-138
Alignment gi|XP_855336.1| PREDICTED: similar to chromosome 14 open readin... 80 3e-15
Alignment gi|NP_001003047.1| mitochondrial uncoupling protein 3 [Canis lu... 80 4e-15
Alignment gi|NP_001003046.1| mitochondrial brown fat uncoupling protein 1... 79 6e-15
Alignment gi|XP_538639.2| PREDICTED: similar to chromosome 14 open readin... 78 2e-14
Alignment gi|XP_860319.1| PREDICTED: similar to CG2616-PA isoform 5 [Cani... 77 2e-14
Alignment gi|XP_534227.2| PREDICTED: similar to CG2616-PA isoform 1 [Cani... 77 2e-14
Alignment gi|XP_540861.2| PREDICTED: similar to mitochondrial hepatocellu... 77 2e-14
Alignment gi|XP_860280.1| PREDICTED: similar to CG2616-PA isoform 4 [Cani... 75 2e-13
Alignment gi|XP_860242.1| PREDICTED: similar to CG2616-PA isoform 3 [Cani... 74 2e-13
>ref|XP_850441.1| PREDICTED: similar to Tricarboxylate transport protein, mitochondrial
precursor (Citrate transport protein) (CTP)
(Tricarboxylate carrier protein) [Canis familiaris].
Length = 378
Score = 490 bits (1261), Expect = e-138
Identities = 246/304 (80%), Positives = 249/304 (81%)
Frame = +1
Query: 142 RALXXXXXXXXKAKLTHPGKXXXXXXXXXXXEICITFPTEYVKTQLQLDERSHPPRYRGI 321
RAL KAKLTHPGK EICITFPTEYVKTQLQLDERSHPPRYRGI
Sbjct: 75 RALAAAAPASGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERSHPPRYRGI 134
Query: 322 GDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFGTFEFLSNHMRDAQGRLDSTRXXXX 501
GDCVRQTVRSHGV IPKAAVRFG FEFLSNHMRD QGRLDSTR
Sbjct: 135 GDCVRQTVRSHGVLGLYRGLSSLLYGSIPKAAVRFGMFEFLSNHMRDPQGRLDSTRGLLC 194
Query: 502 XXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTAT 681
PMETIKVKFIHDQTS PKYRGFFHGVREIVREQGLKGTYQGLTAT
Sbjct: 195 GLGAGVAEAVVVVCPMETIKVKFIHDQTSPKPKYRGFFHGVREIVREQGLKGTYQGLTAT 254
Query: 682 VLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTR 861
VLKQGSNQAIRFFVMT+LRNWYRGDNPNKPMNPLITGVFGA+AGAASVFGNTPLDVIKTR
Sbjct: 255 VLKQGSNQAIRFFVMTSLRNWYRGDNPNKPMNPLITGVFGAVAGAASVFGNTPLDVIKTR 314
Query: 862 MQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKV 1041
MQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVF+IYDEVVKLLNKV
Sbjct: 315 MQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFVIYDEVVKLLNKV 374
Query: 1042 WKTD 1053
WKTD
Sbjct: 375 WKTD 378
>ref|XP_855336.1| PREDICTED: similar to chromosome 14 open reading frame 68 [Canis
familiaris].
Length = 388
Score = 80.5 bits (197), Expect = 3e-15
Identities = 77/304 (25%), Positives = 118/304 (38%), Gaps = 39/304 (12%)
Frame = +1
Query: 238 ICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAA 417
+ + +P + VK ++Q + P+YRGIG CV T R + ++
Sbjct: 86 VAVGYPLDTVKVKIQTE-----PKYRGIGHCVWDTYRRERLRGFYRGLSLPVCTVSLISS 140
Query: 418 VRFGTFEFLSNHM-RDAQGRLDST---RXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQT 585
V FGT+ H+ R G D+ P E KV+ + QT
Sbjct: 141 VSFGTYRHCLAHICRFRYGSPDAKPAKTDITLSGFASGVVRVFLTSPTEVAKVR-LQTQT 199
Query: 586 SSN------------------------PKYRGFFHGVREIVREQGLKGTYQGLTATVLKQ 693
PKYRG H + + RE+GL+G Y+G +A + +
Sbjct: 200 QQRRPSASGPSAAPPMCPAPPAGSVPGPKYRGPLHCLATVAREEGLRGLYKGSSALLFRD 259
Query: 694 GSNQAIRFFVMTALRNWY---------RGDNPNKPMNPLITGVFGAIAGAASVFGNTPLD 846
G + A F T L P P N L + G AG + TP+D
Sbjct: 260 GHSFATYFLSYTILCEQLTPAGHSQPGERSAPPPPANVLGVLLAGGCAGVLAWAVATPMD 319
Query: 847 VIKTRMQ--GLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEV 1020
VIK+R+Q G +YR C + +R EG + +KG R +VF+ Y+ V
Sbjct: 320 VIKSRLQADGQGQRRYRGLLHCVVTNVREEGPRVLFKGLKLNCCRAFPVNMVVFVTYEAV 379
Query: 1021 VKLL 1032
++L+
Sbjct: 380 LRLI 383
Score = 60.1 bits (144), Expect = 4e-09
Identities = 54/210 (25%), Positives = 82/210 (39%), Gaps = 30/210 (14%)
Frame = +1
Query: 544 PMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRF-- 717
P++T+KVK + PKYRG H V + R + L+G Y+GL+ V ++ F
Sbjct: 91 PLDTVKVKI-----QTEPKYRGIGHCVWDTYRRERLRGFYRGLSLPVCTVSLISSVSFGT 145
Query: 718 --FVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ-------- 867
+ + + G KP IT + G +G VF +P +V K R+Q
Sbjct: 146 YRHCLAHICRFRYGSPDAKPAKTDIT-LSGFASGVVRVFLTSPTEVAKVRLQTQTQQRRP 204
Query: 868 ------------------GLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVA 993
+ KYR C + R EGL+ YKG+ L R A
Sbjct: 205 SASGPSAAPPMCPAPPAGSVPGPKYRGPLHCLATVAREEGLRGLYKGSSALLFRDGHSFA 264
Query: 994 IVFIIYDEVVKLLNKVWKTD*AVGAAPSAP 1083
F+ Y + + L + +AP P
Sbjct: 265 TYFLSYTILCEQLTPAGHSQPGERSAPPPP 294
>ref|NP_001003047.1| mitochondrial uncoupling protein 3 [Canis lupus familiaris].
Length = 311
Score = 80.1 bits (196), Expect = 4e-15
Identities = 65/278 (23%), Positives = 111/278 (39%), Gaps = 12/278 (4%)
Frame = +1
Query: 244 ITFPTEYVKTQLQLDERSHPPR------YRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXI 405
+TFP + K +LQ+ + + YRG+ + VR+ G +
Sbjct: 30 LTFPLDTAKVRLQIQGENQATQAARRIQYRGVLGTILTMVRTEGPRSPYNGLVAGLQRQM 89
Query: 406 PKAAVRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKF---IH 576
A++R G ++ + S P + +KV+F IH
Sbjct: 90 SFASIRIGLYDSVKQFYTPKGSDHSSITTRILAGCTTGAMAVSCAQPTDVVKVRFQASIH 149
Query: 577 DQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNW---Y 747
SN KY G R I RE+G++G ++G + + ++ Y
Sbjct: 150 LGAGSNRKYSGTMDAYRTIAREEGVRGLWKGTLPNITRNAIVNCAEMVTYDIIKEKLLDY 209
Query: 748 RGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRN 927
N P + + FGA G + +P+DV+KTR +Y + DC L+++
Sbjct: 210 HLLTDNFPCH--LISAFGA--GFCATVVASPVDVVKTRYMNSPPGQYCSPLDCMLKMVTQ 265
Query: 928 EGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKV 1041
EG AFYKG P R+ ++F+ Y+++ + L KV
Sbjct: 266 EGPTAFYKGFTPSFLRLGTWNVVMFVTYEQLKRALMKV 303
>ref|NP_001003046.1| mitochondrial brown fat uncoupling protein 1 [Canis lupus
familiaris].
Length = 309
Score = 79.3 bits (194), Expect = 6e-15
Identities = 66/285 (23%), Positives = 123/285 (43%), Gaps = 16/285 (5%)
Frame = +1
Query: 244 ITFPTEYVKTQLQLD-----ERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIP 408
ITFP + K +LQ+ + PRYRG+ V R+ G+ +
Sbjct: 30 ITFPLDTAKVRLQIQGEGQGQPPRAPRYRGVLGTVATLARTEGLQKLYSGLPAGLQRQVG 89
Query: 409 KAAVRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTS 588
A++R G ++ + + QG S P E +KV+ Q
Sbjct: 90 FASLRIGLYDSVREWLSPGQGAAASLGSRISAGVMTGGAAVFIGQPTEVVKVRL---QAQ 146
Query: 589 SN-----PKYRGFFHGVREIVREQGLKGTYQGLTATVLKQ---GSNQAIRFFVM--TALR 738
S+ P+Y G ++ R I +GL G ++G T +++ + + + +M ++
Sbjct: 147 SHLHGRKPRYTGTYNAYRIIATTEGLTGLWKGTTPNLMRNVIINCTELVTYDLMKEALVK 206
Query: 739 NWYRGDN-PNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQ 915
N D+ P ++ L+ AG + ++P+DV+KTR +Y + +C +
Sbjct: 207 NHLLADDLPCHFLSALV-------AGFCTTVLSSPVDVVKTRFVNSVPEQYTSVPNCAMT 259
Query: 916 ILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKVWKT 1050
+L EG AF+KG +P R+ I+F+ ++++ + L K +T
Sbjct: 260 MLTKEGPLAFFKGFVPSFLRLGSWNVIMFVCFEQLKRELMKSGRT 304
>ref|XP_538639.2| PREDICTED: similar to chromosome 14 open reading frame 68 [Canis
familiaris].
Length = 502
Score = 77.8 bits (190), Expect = 2e-14
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Frame = +1
Query: 595 PKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPM 774
P Y+G H + IVR +GL G Y+G+ A +L+ + F L +W + P
Sbjct: 347 PVYQGPVHCIATIVRTEGLAGMYRGVGAMLLRDVPGYCLYFIPYVFLNDWITPEACTGP- 405
Query: 775 NPLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLEAHKYRNTWDCGLQILRNEGLKAFY 948
NP + G +AGA S TP+DV+K+R+Q G+ +KY+ DC Q + EGLK F+
Sbjct: 406 NPCAVWLAGGMAGAISWGTATPMDVVKSRLQADGVYLNKYKGVLDCISQSYQKEGLKVFF 465
Query: 949 KGTIPRLGRVCLDVAIVFIIYD 1014
+G R A +F+ Y+
Sbjct: 466 RGITVNAVRGFPMSAAMFLGYE 487
>ref|XP_860319.1| PREDICTED: similar to CG2616-PA isoform 5 [Canis familiaris].
Length = 304
Score = 77.4 bits (189), Expect = 2e-14
Identities = 62/258 (24%), Positives = 105/258 (40%), Gaps = 1/258 (0%)
Frame = +1
Query: 253 PTEYVKTQLQ-LDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFG 429
P + +KT+LQ L +H G+ + + VR+ + +P + FG
Sbjct: 47 PLDLLKTRLQTLQPSAHGSGRIGMLALLLKVVRTESILGLWKGISPSIVRCVPGIGIYFG 106
Query: 430 TFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRG 609
T L + +G + P+ IK ++ S Y
Sbjct: 107 TLYSLKQYF--LRGHPPTALESVILGVGSRSVAGVCMSPITVIKTRY----ESGRYGYES 160
Query: 610 FFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLIT 789
+ +R I R +G +G + GLTAT+L+ I +N D + + P++
Sbjct: 161 IYTALRSIYRSEGHRGLFSGLTATLLRDAPFSGIYLMFYNQTKNIMTHDQLDANLIPVVN 220
Query: 790 GVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRL 969
G AG + P DVIKT MQ L K+R I ++ GL+ F++G +PR
Sbjct: 221 FSCGIFAGILASLVTQPADVIKTHMQ-LSPMKFRWIGQAMTLIFKDYGLRGFFQGGVPRA 279
Query: 970 GRVCLDVAIVFIIYDEVV 1023
R L A+ + +Y+E++
Sbjct: 280 LRRALMAAMAWTVYEEMM 297
>ref|XP_534227.2| PREDICTED: similar to CG2616-PA isoform 1 [Canis familiaris].
Length = 304
Score = 77.4 bits (189), Expect = 2e-14
Identities = 62/258 (24%), Positives = 105/258 (40%), Gaps = 1/258 (0%)
Frame = +1
Query: 253 PTEYVKTQLQ-LDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFG 429
P + +KT+LQ L +H G+ + + VR+ + +P + FG
Sbjct: 47 PLDLLKTRLQTLQPSAHGSGRIGMLALLLKVVRTESILGLWKGISPSIVRCVPGIGIYFG 106
Query: 430 TFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRG 609
T L + +G + P+ IK ++ S Y
Sbjct: 107 TLYSLKQYF--LRGHPPTALESVILGVGSRSVAGVCMSPITVIKTRY----ESGRYGYES 160
Query: 610 FFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLIT 789
+ +R I R +G +G + GLTAT+L+ I +N D + + P++
Sbjct: 161 IYTALRSIYRSEGHRGLFSGLTATLLRDAPFSGIYLMFYNQTKNIMTHDQLDANLIPVVN 220
Query: 790 GVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRL 969
G AG + P DVIKT MQ L K+R I ++ GL+ F++G +PR
Sbjct: 221 FSCGIFAGILASLVTQPADVIKTHMQ-LSPMKFRWIGQAMTLIFKDYGLRGFFQGGVPRA 279
Query: 970 GRVCLDVAIVFIIYDEVV 1023
R L A+ + +Y+E++
Sbjct: 280 LRRALMAAMAWTVYEEMM 297
>ref|XP_540861.2| PREDICTED: similar to mitochondrial hepatocellular
carcinoma-downregulated carrier protein [Canis
familiaris].
Length = 353
Score = 77.4 bits (189), Expect = 2e-14
Identities = 69/210 (32%), Positives = 91/210 (43%), Gaps = 9/210 (4%)
Frame = +1
Query: 544 PMETIKVKFIHDQT-------SSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSN 702
P + IKV+ + +QT S P+YRG H I RE G G ++G A L+
Sbjct: 119 PFDLIKVR-LQNQTEPRARPGSPPPRYRGPVHCAVSICREDGPWGLFRGAWALTLRDTPT 177
Query: 703 QAIRFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLE 876
I F L D N ++ V G AG AS TPLDVIK+RMQ GL+
Sbjct: 178 LGIYFVTYEWLCRQSTPDRQNPGAATVL--VAGGFAGIASWAVATPLDVIKSRMQMGGLK 235
Query: 877 AHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKVWKTD* 1056
YR DC + R EGL F++G R A+ F+ Y+ ++K +
Sbjct: 236 HRVYRGVLDCMVSSARQEGLGVFFRGLTINSARAFPVNAVTFLTYEYLLKSSQSLHS--- 292
Query: 1057 AVGAAPSAPLSQFHAVVPKSPSPSLHSVAQ 1146
AA PL H + S SP L S Q
Sbjct: 293 --WAALHPPLPPPHLLSNCSTSPPLESSLQ 320
>ref|XP_860280.1| PREDICTED: similar to CG2616-PA isoform 4 [Canis familiaris].
Length = 301
Score = 74.7 bits (182), Expect = 2e-13
Identities = 63/258 (24%), Positives = 105/258 (40%), Gaps = 1/258 (0%)
Frame = +1
Query: 253 PTEYVKTQLQ-LDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFG 429
P + +KT+LQ L +H G+ + + VR+ + +P + FG
Sbjct: 47 PLDLLKTRLQTLQPSAHGSGRIGMLALLLKVVRTESILGLWKGISPSIVRCVPGIGIYFG 106
Query: 430 TFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRG 609
T L + +G + P+ IK ++ S Y
Sbjct: 107 TLYSLKQYF--LRGHPPTALESVILGVGSRSVAGVCMSPITVIKTRY----ESGRYGYES 160
Query: 610 FFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLIT 789
+ +R I R +G +G + GLTAT+L+ I +N D + + P++
Sbjct: 161 IYTALRSIYRSEGHRGLFSGLTATLLRDAPFSGIYLMFYNQTKNIMTHDQLDANLIPVVN 220
Query: 790 GVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRL 969
G AG + P DVIKT MQ L K+R T I + GL+ F++G +PR
Sbjct: 221 FSCGIFAGILASLVTQPADVIKTHMQ-LSPMKFRIT---AKNIWLDYGLRGFFQGGVPRA 276
Query: 970 GRVCLDVAIVFIIYDEVV 1023
R L A+ + +Y+E++
Sbjct: 277 LRRALMAAMAWTVYEEMM 294
>ref|XP_860242.1| PREDICTED: similar to CG2616-PA isoform 3 [Canis familiaris].
Length = 311
Score = 74.3 bits (181), Expect = 2e-13
Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 8/265 (3%)
Frame = +1
Query: 253 PTEYVKTQLQ-LDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFG 429
P + +KT+LQ L +H G+ + + VR+ + +P + FG
Sbjct: 47 PLDLLKTRLQTLQPSAHGSGRIGMLALLLKVVRTESILGLWKGISPSIVRCVPGIGIYFG 106
Query: 430 TFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRG 609
T L + +G + P+ IK ++ S Y
Sbjct: 107 TLYSLKQYF--LRGHPPTALESVILGVGSRSVAGVCMSPITVIKTRY----ESGRYGYES 160
Query: 610 FFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFF-------VMTALRNWYRGDNPNK 768
+ +R I R +G +G + GLTAT+L+ I +MT + R D +
Sbjct: 161 IYTALRSIYRSEGHRGLFSGLTATLLRDAPFSGIYLMFYNQTKNIMTHGMDKRRSDQLDA 220
Query: 769 PMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGLKAFY 948
+ P++ G AG + P DVIKT MQ L K+R I ++ GL+ F+
Sbjct: 221 NLIPVVNFSCGIFAGILASLVTQPADVIKTHMQ-LSPMKFRWIGQAMTLIFKDYGLRGFF 279
Query: 949 KGTIPRLGRVCLDVAIVFIIYDEVV 1023
+G +PR R L A+ + +Y+E++
Sbjct: 280 QGGVPRALRRALMAAMAWTVYEEMM 304
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,485,430
Number of extensions: 1112531
Number of successful extensions: 4708
Number of sequences better than 1.0e-05: 72
Number of HSP's gapped: 4466
Number of HSP's successfully gapped: 105
Length of query: 384
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 279
Effective length of database: 15,374,224
Effective search space: 4289408496
Effective search space used: 4289408496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007734
(1153 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177118.1| tricarboxylate transport protein, mitochondr... 500 e-142
Alignment gi|NP_999214.1| mitochondrial uncoupling protein 3 [Sus scrofa]. 86 3e-17
Alignment gi|XP_003128777.1| PREDICTED: solute carrier family 25 member 4... 83 3e-16
Alignment gi|XP_003122611.1| PREDICTED: solute carrier family 25 member 4... 75 7e-14
Alignment gi|XP_003128768.2| PREDICTED: hypothetical protein LOC100513364... 75 9e-14
Alignment gi|XP_003128561.2| PREDICTED: mitochondrial 2-oxodicarboxylate ... 75 9e-14
Alignment gi|NP_999454.1| mitochondrial uncoupling protein 2 [Sus scrofa]. 74 1e-13
Alignment gi|XP_003358423.1| PREDICTED: solute carrier family 25 member 3... 74 1e-13
Alignment gi|XP_003128771.1| PREDICTED: mitochondrial carnitine/acylcarni... 74 1e-13
Alignment gi|XP_003131953.2| PREDICTED: LOW QUALITY PROTEIN: mitochondria... 72 6e-13
>ref|NP_001177118.1| tricarboxylate transport protein, mitochondrial [Sus scrofa].
Length = 308
Score = 500 bits (1288), Expect = e-142
Identities = 253/304 (83%), Positives = 253/304 (83%)
Frame = +1
Query: 142 RALXXXXXXXXKAKLTHPGKXXXXXXXXXXXEICITFPTEYVKTQLQLDERSHPPRYRGI 321
RAL KAKLTHPGK EICITFPTEYVKTQLQLDERSHPPRYRGI
Sbjct: 5 RALAAAAPAPGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERSHPPRYRGI 64
Query: 322 GDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFGTFEFLSNHMRDAQGRLDSTRXXXX 501
GDCVRQTVRSHGV IPKAAVRFGTFEFLSNHMRDAQGRLDSTR
Sbjct: 65 GDCVRQTVRSHGVLGLYRGLSSLLYGSIPKAAVRFGTFEFLSNHMRDAQGRLDSTRGLLC 124
Query: 502 XXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTAT 681
PMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTAT
Sbjct: 125 GLGAGVAEAVVVVCPMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTAT 184
Query: 682 VLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTR 861
VLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTR
Sbjct: 185 VLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTR 244
Query: 862 MQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKV 1041
MQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKV
Sbjct: 245 MQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKV 304
Query: 1042 WKTD 1053
WKTD
Sbjct: 305 WKTD 308
>ref|NP_999214.1| mitochondrial uncoupling protein 3 [Sus scrofa].
Length = 308
Score = 86.3 bits (212), Expect = 3e-17
Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 9/275 (3%)
Frame = +1
Query: 244 ITFPTEYVKTQLQLDERSHPPR---YRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKA 414
+TFP + K +LQ+ + R YRG+ + VR+ G + A
Sbjct: 30 LTFPLDTAKVRLQIQGENQAARSAQYRGVLGTILTMVRNEGPRSPYNGLVAGLQRQMSFA 89
Query: 415 AVRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKF---IHDQT 585
++R G ++ + S P + +KV+F IH
Sbjct: 90 SIRIGLYDSVKQLYTPKGSDHSSITTRILAGCTTGAMAVTCAQPTDVVKVRFQASIHAGP 149
Query: 586 SSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNW---YRGD 756
SN KY G R I RE+G++G ++G+ + + ++ Y
Sbjct: 150 RSNRKYSGTMDAYRTIAREEGVRGLWKGILPNITRNAIVNCAEMVTYDVIKEKVLDYHLL 209
Query: 757 NPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGL 936
N P + FGA G + +P+DV+KTR +Y+N DC L+++ EG
Sbjct: 210 TDNLPCH--FVSAFGA--GFCATVVASPVDVVKTRYMNSPPGQYQNPLDCMLKMVTQEGP 265
Query: 937 KAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKV 1041
AFYKG P R+ ++F+ Y+++ + L KV
Sbjct: 266 TAFYKGFTPSFLRLGSWNVVMFVSYEQLKRALMKV 300
>ref|XP_003128777.1| PREDICTED: solute carrier family 25 member 47-like [Sus scrofa].
Length = 311
Score = 82.8 bits (203), Expect = 3e-16
Identities = 77/301 (25%), Positives = 117/301 (38%), Gaps = 37/301 (12%)
Frame = +1
Query: 238 ICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAA 417
+ + +P + VK ++Q + P+Y GI C+R T R V ++
Sbjct: 14 VAVGYPLDTVKVRIQTE-----PKYTGIWHCIRDTYRQERVRGFYRGLSLPVCTVSLVSS 68
Query: 418 VRFGTFEFLSNHM-RDAQGRLDSTRXXXXXXXXXXXXXXXXXX---PMETIKVKFIHDQT 585
V FGT+ H+ R G D+ P E KV+ + QT
Sbjct: 69 VSFGTYRHCLAHICRFRYGSADAKAAKTDITLSGFASGLVRVFLTSPTEVAKVR-LQTQT 127
Query: 586 SSN-----------------------------PKYRGFFHGVREIVREQGLKGTYQGLTA 678
+ PKYRG H + + RE+GL+G Y+G +A
Sbjct: 128 QTQTTQQRRPSASGPSAVPPPCPAPPARSAPGPKYRGPLHCLATVAREEGLRGLYKGSSA 187
Query: 679 TVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLITGVF--GAIAGAASVFGNTPLDVI 852
+L+ G + A F L W P P + GV G AG + TP+DVI
Sbjct: 188 LLLRDGHSFATYFLSYAILCEWL---TPAGRSQPDVLGVLVAGGCAGVLAWAVATPMDVI 244
Query: 853 KTRMQ--GLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVK 1026
K+R+Q G +YR C + +R EG + +KG R VF+ Y+ V++
Sbjct: 245 KSRLQADGQGQRRYRGLLHCVVTSVREEGPQVLFKGLSLNCCRAFPVNMAVFVAYEAVLR 304
Query: 1027 L 1029
L
Sbjct: 305 L 305
>ref|XP_003122611.1| PREDICTED: solute carrier family 25 member 45-like [Sus scrofa].
Length = 288
Score = 75.1 bits (183), Expect = 7e-14
Identities = 71/268 (26%), Positives = 105/268 (39%), Gaps = 14/268 (5%)
Frame = +1
Query: 253 PTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFGT 432
P + VK +LQ YRGI DC+ +T R + +V FG
Sbjct: 22 PFDTVKVRLQTQTT-----YRGIVDCMVKTYRHESLLGFFKGMSFPIASIAVVNSVLFGV 76
Query: 433 FE-----FLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQT---- 585
+ + ++ + + S P++ IKV+ + +QT
Sbjct: 77 YSNALLALTATSHQERRAQPPSYTHVFIAGCTGGFLQAYCLSPLDFIKVR-LQNQTEPRA 135
Query: 586 ---SSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGD 756
S P+YRG H I + +G +G ++G A L+ I F L D
Sbjct: 136 KLGSPPPRYRGPVHCAASIFQAEGPRGLFRGAWALTLRDTPTMGIYFVTYEWLCRQSTPD 195
Query: 757 NPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLEAHKYRNTWDCGLQILRNE 930
N ++ V G AG S TPLDVIK+RMQ GL+ YR DC + R E
Sbjct: 196 GQNPSSATVL--VAGGFAGLTSWVTATPLDVIKSRMQMAGLKQRVYRGLLDCMVSSARQE 253
Query: 931 GLKAFYKGTIPRLGRVCLDVAIVFIIYD 1014
GL F++G R A+ F+ Y+
Sbjct: 254 GLGVFFRGLTINSARAFPVNAVTFLSYE 281
>ref|XP_003128768.2| PREDICTED: hypothetical protein LOC100513364 [Sus scrofa].
Length = 772
Score = 74.7 bits (182), Expect = 9e-14
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 3/166 (1%)
Frame = +1
Query: 544 PMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFV 723
P +T+KV+ + Q+ P+YRG H + I++++ + G Y+GL + ++ A+ F V
Sbjct: 351 PFDTVKVR-LQVQSMEKPQYRGTLHCFQAIIKQESVLGLYKGLGSPLMGLTFINALVFGV 409
Query: 724 MTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEA---HKYRN 894
N R + P N + G A AGA P+++ KTR+Q +A YR
Sbjct: 410 QG---NTLRALGQDSPRNQFLAG---AAAGAIQCVVCCPMELAKTRLQLQDAGPARTYRG 463
Query: 895 TWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLL 1032
+ DC QI R EGL+ +G I L R + F+ YD + + L
Sbjct: 464 SLDCLAQIYRREGLRGVNRGMISTLLRETPSFGVYFLTYDVLTRAL 509
Score = 63.9 bits (154), Expect = 2e-10
Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 3/246 (1%)
Frame = +1
Query: 238 ICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAA 417
+ + P + VK +LQ+ + P+YRG C + ++ V A
Sbjct: 346 VLVGHPFDTVKVRLQV-QSMEKPQYRGTLHCFQAIIKQESVLGLYKGLGSPLMGLTFINA 404
Query: 418 VRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNP 597
+ FG N +R A G+ DS R PME K +
Sbjct: 405 LVFGV---QGNTLR-ALGQ-DSPRNQFLAGAAAGAIQCVVCCPMELAKTRLQLQDAGPAR 459
Query: 598 KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMN 777
YRG + +I R +GL+G +G+ +T+L++ + + F L + ++ +
Sbjct: 460 TYRGSLDCLAQIYRREGLRGVNRGMISTLLRETPSFGVYFLTYDVLTRALGCEPGDRLLV 519
Query: 778 PLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLE-AHKYRNTWDCGLQILRNEGLKAFY 948
P + + G +G S P+DV+K+R+Q GL A +Y+ DC Q R EG + F
Sbjct: 520 PKLL-LAGGTSGIMSWLSTYPVDVVKSRLQADGLRGAPRYQGILDCVRQSYRAEGWRVFT 578
Query: 949 KGTIPR 966
+G R
Sbjct: 579 RGLSSR 584
>ref|XP_003128561.2| PREDICTED: mitochondrial 2-oxodicarboxylate carrier-like [Sus
scrofa].
Length = 269
Score = 74.7 bits (182), Expect = 9e-14
Identities = 65/271 (23%), Positives = 114/271 (42%), Gaps = 7/271 (2%)
Frame = +1
Query: 253 PTEYVKTQLQLDE-RSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFG 429
P + VKT+ Q+ + P Y+ +GD R R+ G+ PK AV+F
Sbjct: 3 PLDVVKTRFQIQRCATDPNSYKSLGDSFRMIFRTEGLFGFYKGILPPILAETPKRAVKFF 62
Query: 430 TFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRG 609
TFE N + L P E +KV ++ + +
Sbjct: 63 TFEQYKNLLGYVS--LSPALTFAIAGLGSGLTEAIVVNPFEVVKVGLQANRNTFKEQPST 120
Query: 610 FFHGVREIVREQGL--KGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPL 783
+ R I++++GL +G +G TAT+ + G + F ++N N + + L
Sbjct: 121 MSYA-RHIIKKEGLGLQGLNKGFTATLGRHGVFNMVYFGFYFNVKNIVPV-NKDPTLEFL 178
Query: 784 ITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAH----KYRNTWDCGLQILRNEGLKAFYK 951
G ++G + N P DV K+R+QG + KYR + + + EG+ A YK
Sbjct: 179 RKFGIGLLSGTIASVINIPFDVAKSRIQGPQPVPGEIKYRTCFKTMATVYQEEGISALYK 238
Query: 952 GTIPRLGRVCLDVAIVFIIYDEVVKLLNKVW 1044
G +P++ R+ A++ ++Y+ L + W
Sbjct: 239 GLLPKIMRLGPGGAVMLLVYEYTYSWLQENW 269
>ref|NP_999454.1| mitochondrial uncoupling protein 2 [Sus scrofa].
Length = 309
Score = 74.3 bits (181), Expect = 1e-13
Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 9/272 (3%)
Frame = +1
Query: 244 ITFPTEYVKTQLQLDERSHPP-------RYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXX 402
ITFP + K +LQ+ P +YRG+ + VR+ G
Sbjct: 30 ITFPLDTAKVRLQIQGERRGPVQAAASAQYRGVLGTILTMVRNEGPRSLYNGLVAGLQRQ 89
Query: 403 IPKAAVRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKF-IHD 579
+ A+VR G ++ + H P + +KV+F
Sbjct: 90 MSFASVRIGLYDSVK-HFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA 148
Query: 580 QTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWY-RGD 756
+ +YR + I RE+GL+G ++G + V + +++ + D
Sbjct: 149 RAGGGRRYRSTVDAYKTIAREEGLRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAD 208
Query: 757 NPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGL 936
+ T FGA G + +P+DV+KTR +Y + C L +L+ EG
Sbjct: 209 LMTDDLPCHFTSAFGA--GFCTTVIASPVDVVKTRYMNSAPGQYSSAGHCALTMLQKEGP 266
Query: 937 KAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLL 1032
+AFYKG P R+ ++F+ Y+++ + L
Sbjct: 267 RAFYKGFTPSFLRLGSWNVVMFVTYEQLKRAL 298
Score = 68.2 bits (165), Expect = 8e-12
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 11/176 (6%)
Frame = +1
Query: 544 PMETIKVKFIHD-------QTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSN 702
P++T KV+ Q +++ +YRG + +VR +G + Y GL A + +Q S
Sbjct: 33 PLDTAKVRLQIQGERRGPVQAAASAQYRGVLGTILTMVRNEGPRSLYNGLVAGLQRQMSF 92
Query: 703 QAIRFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLE-- 876
++R + +++++Y + + + + G+ GA +V P DV+K R Q
Sbjct: 93 ASVRIGLYDSVKHFYTKGSEHAGIGSRLLA--GSTTGALAVAVAQPTDVVKVRFQAQARA 150
Query: 877 --AHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNK 1038
+YR+T D I R EGL+ +KGT P + R + + YD + L K
Sbjct: 151 GGGRRYRSTVDAYKTIAREEGLRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 206
>ref|XP_003358423.1| PREDICTED: solute carrier family 25 member 38-like isoform 1 [Sus
scrofa].
Length = 304
Score = 74.3 bits (181), Expect = 1e-13
Identities = 61/258 (23%), Positives = 104/258 (40%), Gaps = 1/258 (0%)
Frame = +1
Query: 253 PTEYVKTQLQLDERS-HPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFG 429
P + +KT+LQ + S H R G+ + VR+ + +P + FG
Sbjct: 47 PLDLLKTRLQTVQPSAHGSRRIGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFG 106
Query: 430 TFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRG 609
+ L + +G + P+ IK ++ S Y
Sbjct: 107 SLYSLKQYF--LRGHPPTALESVILGVGSRSIAGVCMSPITVIKTRY----ESGRYGYES 160
Query: 610 FFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLIT 789
+ +R I +G +G + GLTAT+L+ I +N D + + P+
Sbjct: 161 IYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFYNQTKNIVLHDQLDAVLVPVAN 220
Query: 790 GVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRL 969
G AG + P DVIKT MQ L K+R I ++ GL+ F++G++PR
Sbjct: 221 FSCGIFAGILASLVTQPADVIKTHMQ-LSPVKFRWIGQAVTLIFKDYGLRGFFQGSVPRT 279
Query: 970 GRVCLDVAIVFIIYDEVV 1023
R L A+ + +Y+E++
Sbjct: 280 LRRTLVAAMAWTVYEEMM 297
>ref|XP_003128771.1| PREDICTED: mitochondrial carnitine/acylcarnitine carrier protein
CACL-like [Sus scrofa].
Length = 310
Score = 74.3 bits (181), Expect = 1e-13
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 3/166 (1%)
Frame = +1
Query: 544 PMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFV 723
P +T+KV+ + Q+ P+YRG H + I++++ + G Y+GL + ++ A+ F V
Sbjct: 28 PFDTVKVR-LQVQSMEKPQYRGTLHCFQAIIKQESVLGLYKGLGSPLMGLTFINALVFGV 86
Query: 724 MTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEA---HKYRN 894
N R + P N + G A AGA P+++ KTR+Q +A YR
Sbjct: 87 QG---NTLRALGQDSPRNQFLPG---AAAGAIQCVVCCPMELAKTRLQLQDAGPARTYRG 140
Query: 895 TWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLL 1032
+ DC QI R EGL+ +G I L R + F+ YD + + L
Sbjct: 141 SLDCLAQIYRREGLRGVNRGMISTLLRETPSFGVYFLTYDVLTRAL 186
Score = 63.9 bits (154), Expect = 2e-10
Identities = 62/249 (24%), Positives = 103/249 (41%), Gaps = 3/249 (1%)
Frame = +1
Query: 238 ICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAA 417
+ + P + VK +LQ+ + P+YRG C + ++ V A
Sbjct: 23 VLVGHPFDTVKVRLQV-QSMEKPQYRGTLHCFQAIIKQESVLGLYKGLGSPLMGLTFINA 81
Query: 418 VRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNP 597
+ FG N +R A G+ DS R PME K +
Sbjct: 82 LVFGV---QGNTLR-ALGQ-DSPRNQFLPGAAAGAIQCVVCCPMELAKTRLQLQDAGPAR 136
Query: 598 KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMN 777
YRG + +I R +GL+G +G+ +T+L++ + + F L + ++ +
Sbjct: 137 TYRGSLDCLAQIYRREGLRGVNRGMISTLLRETPSFGVYFLTYDVLTRALGCEPGDRLLV 196
Query: 778 PLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLE-AHKYRNTWDCGLQILRNEGLKAFY 948
P + + G +G S P+DV+K+R+Q GL A +Y+ DC Q R EG + F
Sbjct: 197 PKLL-LAGGTSGIMSWLSTYPVDVVKSRLQADGLRGAPRYQGILDCVRQSYRAEGWRVFT 255
Query: 949 KGTIPRLGR 975
+G L R
Sbjct: 256 RGLASTLLR 264
Score = 58.2 bits (139), Expect = 9e-09
Identities = 41/170 (24%), Positives = 66/170 (38%)
Frame = +1
Query: 253 PTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFGT 432
P E KT+LQL + YRG DC+ Q R G+ P V F T
Sbjct: 119 PMELAKTRLQLQDAGPARTYRGSLDCLAQIYRREGLRGVNRGMISTLLRETPSFGVYFLT 178
Query: 433 FEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRGF 612
++ L+ + G P++ +K + D P+Y+G
Sbjct: 179 YDVLTRALGCEPGDRLLVPKLLLAGGTSGIMSWLSTYPVDVVKSRLQADGLRGAPRYQGI 238
Query: 613 FHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNP 762
VR+ R +G + +GL +T+L+ A F +T + + RG+ P
Sbjct: 239 LDCVRQSYRAEGWRVFTRGLASTLLRAFPVNAATFATVTVVLTYARGEEP 288
>ref|XP_003131953.2| PREDICTED: LOW QUALITY PROTEIN: mitochondrial 2-oxoglutarate/malate
carrier protein [Sus scrofa].
Length = 314
Score = 72.0 bits (175), Expect = 6e-13
Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Frame = +1
Query: 544 PMETIKVKF-IHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFF 720
P++ +K + + + + +Y+ FH + I+R +GL+G Y GL+A +L+Q + R
Sbjct: 41 PLDLVKNRMQLSGEGAKTREYKTSFHALTSILRAEGLRGIYTGLSAGLLRQATYTTTRLG 100
Query: 721 VMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQG------LEAH 882
+ T L G + P L+ + G AGA F TP +V RM +
Sbjct: 101 IYTVLFERLTGAD-GTPPGFLLKALIGMTAGATGAFVGTPAEVALIRMTADGRLPPDQRR 159
Query: 883 KYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLL 1032
Y+N +D ++I+R EG+ ++G IP + R + A Y + + L
Sbjct: 160 GYKNVFDALIRIVREEGVPTLWRGCIPTMARAVVVNAAQLASYSQSKQFL 209
Score = 49.7 bits (117), Expect = 3e-06
Identities = 52/272 (19%), Positives = 102/272 (37%), Gaps = 8/272 (2%)
Frame = +1
Query: 253 PTEYVKTQLQLD-ERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFG 429
P + VK ++QL E + Y+ + +R+ G+ R G
Sbjct: 41 PLDLVKNRMQLSGEGAKTREYKTSFHALTSILRAEGLRGIYTGLSAGLLRQATYTTTRLG 100
Query: 430 TFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRG 609
+ L + A G P E ++ D + RG
Sbjct: 101 IYTVLFERLTGADGTPPGFLLKALIGMTAGATGAFVGTPAEVALIRMTADGRLPPDQRRG 160
Query: 610 F---FHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNP 780
+ F + IVRE+G+ ++G T+ + A + + + + D+ N
Sbjct: 161 YKNVFDALIRIVREEGVPTLWRGCIPTMARAVVVNAAQLASYSQSKQFLL-DSGYFSDNI 219
Query: 781 LITGVFGAIAGAASVFGNTPLDVIKTRMQGLEA----HKYRNTWDCGLQILRNEGLKAFY 948
L I+G + + P+D+ KTR+Q + +Y+N D ++++R EG + +
Sbjct: 220 LCHFCASMISGLVTTAASMPVDIAKTRIQNMRTIDGKPEYKNGLDVLVKVIRYEGFFSLW 279
Query: 949 KGTIPRLGRVCLDVAIVFIIYDEVVKLLNKVW 1044
KG P R+ + FI +++ K +++
Sbjct: 280 KGFTPYYARLGPHTVLTFIFLEQMNKAYXRLF 311
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,335,578
Number of extensions: 732109
Number of successful extensions: 3111
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 2957
Number of HSP's successfully gapped: 54
Length of query: 384
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 283
Effective length of database: 8,829,335
Effective search space: 2498701805
Effective search space used: 2498701805
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007734
(1153 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694790.1| solute carrier family 25, member 1 [Mus musculu... 471 e-133
Alignment gi|NP_598915.1| solute carrier family 25 member 45 [Mus musculu... 86 7e-17
Alignment gi|NP_001012310.2| solute carrier family 25 member 47 [Mus musc... 83 4e-16
Alignment gi|NP_033490.1| mitochondrial uncoupling protein 3 [Mus musculu... 79 9e-15
Alignment gi|NP_001161448.1| mitochondrial 2-oxodicarboxylate carrier iso... 77 3e-14
Alignment gi|NP_766165.2| mitochondrial 2-oxodicarboxylate carrier isofor... 77 3e-14
Alignment gi|NP_765990.2| mitochondrial folate transporter/carrier [Mus m... 76 4e-14
Alignment gi|NP_001074517.1| mitochondrial glutamate carrier 2 [Mus muscu... 73 4e-13
Alignment gi|NP_659042.1| solute carrier family 25 member 38 [Mus musculu... 73 4e-13
Alignment gi|NP_851845.1| mitochondrial carnitine/acylcarnitine carrier p... 72 6e-13
>ref|NP_694790.1| solute carrier family 25, member 1 [Mus musculus].
Length = 311
Score = 471 bits (1211), Expect = e-133
Identities = 238/304 (78%), Positives = 246/304 (80%)
Frame = +1
Query: 142 RALXXXXXXXXKAKLTHPGKXXXXXXXXXXXEICITFPTEYVKTQLQLDERSHPPRYRGI 321
RAL K KLTHPGK EICITFPTEYVKTQLQLDER++PPRYRGI
Sbjct: 8 RALSAAAPGSGKPKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERANPPRYRGI 67
Query: 322 GDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFGTFEFLSNHMRDAQGRLDSTRXXXX 501
GDCVRQTVRSHGV IPKAAVRFG FEFLSNHMRDAQGRLDS R
Sbjct: 68 GDCVRQTVRSHGVLGLYRGLSSLLYGSIPKAAVRFGMFEFLSNHMRDAQGRLDSRRGLLC 127
Query: 502 XXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTAT 681
PMETIKVKFIHDQTSSNPKYRGFFHGVREI+REQGLKGTYQGLTAT
Sbjct: 128 GLGAGVAEAVVVVCPMETIKVKFIHDQTSSNPKYRGFFHGVREIIREQGLKGTYQGLTAT 187
Query: 682 VLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTR 861
VLKQGSNQAIRFFVMT+LRNWY+GDN NKPMNPLITGVFGA AGAASVFGNTPLDVIKTR
Sbjct: 188 VLKQGSNQAIRFFVMTSLRNWYQGDNHNKPMNPLITGVFGATAGAASVFGNTPLDVIKTR 247
Query: 862 MQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKV 1041
MQGLEAHKYRNT DCGL+IL+NEG KAFYKGT+PRLGRVCLDVAIVFIIYDEVVKLLNKV
Sbjct: 248 MQGLEAHKYRNTLDCGLKILKNEGPKAFYKGTVPRLGRVCLDVAIVFIIYDEVVKLLNKV 307
Query: 1042 WKTD 1053
WKTD
Sbjct: 308 WKTD 311
>ref|NP_598915.1| solute carrier family 25 member 45 [Mus musculus].
Length = 288
Score = 85.5 bits (210), Expect = 7e-17
Identities = 76/273 (27%), Positives = 111/273 (40%), Gaps = 14/273 (5%)
Frame = +1
Query: 253 PTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFGT 432
P + VK +LQ Y+GI DCV +T R V +V FG
Sbjct: 22 PFDTVKVRLQTQST-----YQGIVDCVVKTYRHESVLGFFKGMSFPIASVALVNSVLFGV 76
Query: 433 FE-----FLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQT---- 585
+ + ++ + + S P + IKV+ + +QT
Sbjct: 77 YSNTLLALTATSHQERRAQPPSYTNIFIAGCTGGLLQAYCLAPFDLIKVR-LQNQTEPRM 135
Query: 586 ---SSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGD 756
SS P+YRG H I+RE+G +G ++G A VL+ + F L Y +
Sbjct: 136 QISSSMPRYRGPVHCAASILREEGPQGLFRGSWALVLRDTPTLGMYFVTYEGLCRQYTPE 195
Query: 757 NPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLEAHKYRNTWDCGLQILRNE 930
N ++ V G AG AS TP DVIK+RMQ GL+ KY DC R E
Sbjct: 196 GQNPSSATVL--VAGGFAGIASWITATPFDVIKSRMQMDGLKGRKYGGMLDCMASSFRQE 253
Query: 931 GLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKL 1029
G+ F+KG R A F+ Y+ +++L
Sbjct: 254 GIGVFFKGMTLNSARAFPVNAATFLSYEYLLRL 286
>ref|NP_001012310.2| solute carrier family 25 member 47 [Mus musculus].
Length = 310
Score = 83.2 bits (204), Expect = 4e-16
Identities = 76/300 (25%), Positives = 118/300 (39%), Gaps = 36/300 (12%)
Frame = +1
Query: 238 ICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAA 417
+ + +P + VK ++Q + + Y GI C+R T R V ++
Sbjct: 14 VAVGYPLDTVKVRIQTEAK-----YAGIWHCIRDTYRQERVWGFYRGLSLPVCTVSLVSS 68
Query: 418 VRFGTFEFLSNHM-RDAQGRLDST---RXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQT 585
V FGT+ H+ R G D+ P E KV+ + QT
Sbjct: 69 VSFGTYHHCLAHICRFRYGSTDAKPTKADITLSGCASGLVRVFLTSPTEVAKVR-LQTQT 127
Query: 586 SSN----------------------------PKYRGFFHGVREIVREQGLKGTYQGLTAT 681
+ PKY G H + + RE+GL+G Y+G +A
Sbjct: 128 QAQTQQRRSSASWTSGAPALCPTPTACLEPRPKYSGPLHCLVTVAREEGLRGLYKGSSAL 187
Query: 682 VLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLITGVF--GAIAGAASVFGNTPLDVIK 855
+L++G + A F L W P P + GV G AG + TP+DVIK
Sbjct: 188 LLREGHSFATYFLSYAMLCEWL---TPAGHSQPDVLGVLVAGGCAGVLAWAVATPMDVIK 244
Query: 856 TRMQ--GLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKL 1029
+R+Q G H+YR C + +R EG + +KG R +VF+ Y+ V++L
Sbjct: 245 SRLQADGQGQHRYRGLLHCVVTSVREEGPRVLFKGLALNCCRAFPVNMVVFVAYEAVLRL 304
>ref|NP_033490.1| mitochondrial uncoupling protein 3 [Mus musculus].
Length = 308
Score = 78.6 bits (192), Expect = 9e-15
Identities = 63/275 (22%), Positives = 110/275 (40%), Gaps = 9/275 (3%)
Frame = +1
Query: 244 ITFPTEYVKTQLQLDERS---HPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKA 414
+TFP + K +LQ+ + +YRG+ + VR+ G + A
Sbjct: 30 LTFPLDTAKVRLQIQGENPGAQSVQYRGVLGTILTMVRTEGPRSPYSGLVAGLHRQMSFA 89
Query: 415 AVRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKF---IHDQT 585
++R G ++ + S P + +KV+F I T
Sbjct: 90 SIRIGLYDSVKQFYTPKGADHSSVAIRILAGCTTGAMAVTCAQPTDVVKVRFQAMIRLGT 149
Query: 586 SSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDN-- 759
KYRG R I RE+G++G ++G + + ++ +
Sbjct: 150 GGERKYRGTMDAYRTIAREEGVRGLWKGTWPNITRNAIVNCAEMVTYDIIKEKLLESHLF 209
Query: 760 -PNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGL 936
N P + FGA G + +P+DV+KTR +YR+ C L+++ EG
Sbjct: 210 TDNFPCH--FVSAFGA--GFCATVVASPVDVVKTRYMNAPLGRYRSPLHCMLKMVAQEGP 265
Query: 937 KAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKV 1041
AFYKG +P R+ ++F+ Y+++ + L KV
Sbjct: 266 TAFYKGFVPSFLRLGAWNVMMFVTYEQLKRALMKV 300
>ref|NP_001161448.1| mitochondrial 2-oxodicarboxylate carrier isoform 2 [Mus musculus].
Length = 305
Score = 76.6 bits (187), Expect = 3e-14
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 7/277 (2%)
Frame = +1
Query: 235 EICITFPTEYVKTQLQLDER-SHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPK 411
EIC+ P + VKT+ Q+ + P YR + + R+ G+ PK
Sbjct: 33 EICLMHPLDVVKTRFQVQRSVTDPQSYRTVRGSFQMIFRTEGLFGFYKGIIPPILAETPK 92
Query: 412 AAVRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSS 591
AV+F TFE + L P E +KV ++
Sbjct: 93 RAVKFSTFELYKKFL--GYMSLSPGLTFLIAGLGSGLTEAVVVNPFEVVKVGLQVNRNLF 150
Query: 592 NPKYRGFFHGVREIVREQGL--KGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPN 765
+ F + R+I++++GL +G +GLTAT+ + G + F ++N +
Sbjct: 151 KEQPSTFAYA-RQIIKKEGLGFQGLNKGLTATLGRHGIFNMVYFGFYHNVKNIIPSSK-D 208
Query: 766 KPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAH----KYRNTWDCGLQILRNEG 933
+ L G ++G N P DV K+R+QG + KYR+ + I R EG
Sbjct: 209 PTLEFLRKFGIGFVSGTMGSVFNIPFDVAKSRIQGPQPVPGEIKYRSCFKTMEMIYREEG 268
Query: 934 LKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKVW 1044
+ A YKG +P++ R+ ++ ++Y+ L + W
Sbjct: 269 ILALYKGLVPKVMRLGPGGGVMLLVYEYTYAWLQENW 305
>ref|NP_766165.2| mitochondrial 2-oxodicarboxylate carrier isoform 1 [Mus musculus].
Length = 298
Score = 76.6 bits (187), Expect = 3e-14
Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 7/277 (2%)
Frame = +1
Query: 235 EICITFPTEYVKTQLQLDER-SHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPK 411
EIC+ P + VKT+ Q+ + P YR + + R+ G+ PK
Sbjct: 26 EICLMHPLDVVKTRFQVQRSVTDPQSYRTVRGSFQMIFRTEGLFGFYKGIIPPILAETPK 85
Query: 412 AAVRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSS 591
AV+F TFE + L P E +KV ++
Sbjct: 86 RAVKFSTFELYKKFL--GYMSLSPGLTFLIAGLGSGLTEAVVVNPFEVVKVGLQVNRNLF 143
Query: 592 NPKYRGFFHGVREIVREQGL--KGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPN 765
+ F + R+I++++GL +G +GLTAT+ + G + F ++N +
Sbjct: 144 KEQPSTFAYA-RQIIKKEGLGFQGLNKGLTATLGRHGIFNMVYFGFYHNVKNIIPSSK-D 201
Query: 766 KPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAH----KYRNTWDCGLQILRNEG 933
+ L G ++G N P DV K+R+QG + KYR+ + I R EG
Sbjct: 202 PTLEFLRKFGIGFVSGTMGSVFNIPFDVAKSRIQGPQPVPGEIKYRSCFKTMEMIYREEG 261
Query: 934 LKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKVW 1044
+ A YKG +P++ R+ ++ ++Y+ L + W
Sbjct: 262 ILALYKGLVPKVMRLGPGGGVMLLVYEYTYAWLQENW 298
>ref|NP_765990.2| mitochondrial folate transporter/carrier [Mus musculus].
Length = 316
Score = 76.3 bits (186), Expect = 4e-14
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 8/150 (5%)
Frame = +1
Query: 544 PMETIKVKF-IHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFF 720
P++ +K++F + D PKY+G H + I + GL+G YQG+T V G + + FF
Sbjct: 42 PLDLVKIRFAVSDGLEVRPKYKGILHCLATIWKVDGLRGLYQGVTPNVWGAGLSWGLYFF 101
Query: 721 VMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ-------GLEA 879
A+++ Y+ + + + PL V A AGA ++ PL V KTR+
Sbjct: 102 FYNAIKS-YKTEGRAEQLEPLEYLVSAAEAGAMTLCITNPLWVTKTRLMLQYGGVASPSQ 160
Query: 880 HKYRNTWDCGLQILRNEGLKAFYKGTIPRL 969
+Y+ +D ++I + EG++ YKG +P L
Sbjct: 161 RQYKGMFDALVKIYKYEGVRGLYKGFVPGL 190
Score = 60.5 bits (145), Expect = 2e-09
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Frame = +1
Query: 589 SNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNK 768
S +Y+G F + +I + +G++G Y+G + S+ A++F L+ Y
Sbjct: 159 SQRQYKGMFDALVKIYKYEGVRGLYKGFVPGLFGT-SHGALQFMAYELLKLKYNKHINRL 217
Query: 769 PMNPLITGVFGAIAGAASVFG---NTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGLK 939
P L T + ++A + +F P V++ R+Q Y D + R EG+
Sbjct: 218 PEAQLSTAEYISVAALSKIFAVAATYPYQVVRARLQDQHV-SYGGVTDVITKTWRKEGIG 276
Query: 940 AFYKGTIPRLGRVCLDVAIVFIIYDEVVKLL 1032
FYKG P L RV I F++Y+ V L
Sbjct: 277 GFYKGIAPNLIRVTPACCITFVVYENVSHFL 307
>ref|NP_001074517.1| mitochondrial glutamate carrier 2 [Mus musculus].
Length = 320
Score = 73.2 bits (178), Expect = 4e-13
Identities = 69/265 (26%), Positives = 106/265 (40%), Gaps = 26/265 (9%)
Frame = +1
Query: 238 ICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAA 417
+ FP + KT+LQ + YRG+ DC+ +T R+ G P+ A
Sbjct: 28 VTCVFPIDLAKTRLQNQQGKDV--YRGMTDCLMKTARAEGFLGMYRGAAVNLTLVTPEKA 85
Query: 418 VRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKF--------I 573
++ +FL + G + + PME +K++
Sbjct: 86 IKLAANDFLRQLLMQ-DGTQRNLKMEMLAGCGAGICQVVITCPMEMLKIQLQDAGRLAVC 144
Query: 574 HDQTSS-NPKYRGFFHG-------------VREIVREQGLKGTYQGLTATVLKQGSNQAI 711
H ++S P R + G RE++R QGL G Y+GL AT+L+ +I
Sbjct: 145 HQASASATPTSRPYSTGSTSTHRRPSATLIARELLRTQGLSGLYRGLGATLLRD-IPFSI 203
Query: 712 RFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ----GLEA 879
+F + A N + + V G AG+ + TPLDV+KTR+Q GL
Sbjct: 204 IYFPLFANLNQLGVSELTGKASFTHSFVAGCTAGSVAAVAVTPLDVLKTRIQTLKKGLGE 263
Query: 880 HKYRNTWDCGLQILRNEGLKAFYKG 954
Y DC ++ EG AF KG
Sbjct: 264 DTYSGVTDCARKLWTQEGPAAFMKG 288
>ref|NP_659042.1| solute carrier family 25 member 38 [Mus musculus].
Length = 326
Score = 73.2 bits (178), Expect = 4e-13
Identities = 64/260 (24%), Positives = 106/260 (40%), Gaps = 3/260 (1%)
Frame = +1
Query: 253 PTEYVKTQLQ-LDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFG 429
P + +KT+LQ L PR G+ + VR+ + +P + FG
Sbjct: 67 PLDLLKTRLQALQPSDLGPRRVGMLAVFLKVVRTESLLGLWKGMSPSIVRCVPGVGIYFG 126
Query: 430 TFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRG 609
T S+ +G + P+ IK ++ S Y
Sbjct: 127 TL--YSSKQYFLRGHPPTALESVILGMGSRSVAGVCMSPITVIKTRY----ESGTYSYES 180
Query: 610 FFHGVREIVREQGLKGTYQGLTATVLKQG--SNQAIRFFVMTALRNWYRGDNPNKPMNPL 783
+ +R I +G +G ++GLTAT+L+ S + F+ T + + + PL
Sbjct: 181 IYAALRSIYCSEGHRGLFRGLTATLLRDAPFSGLYLMFYSQTRTAVLHGTAQLDAALIPL 240
Query: 784 ITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIP 963
I G AG + P DVIKT MQ L K++ I +N GL+ F+ G++P
Sbjct: 241 INFSCGIFAGVLASLVTQPADVIKTHMQ-LSPVKFQWIGQAATLIFKNHGLRGFFHGSVP 299
Query: 964 RLGRVCLDVAIVFIIYDEVV 1023
R R L A+ + +Y+E++
Sbjct: 300 RALRRTLMAAMAWTVYEEMM 319
>ref|NP_851845.1| mitochondrial carnitine/acylcarnitine carrier protein CACL [Mus
musculus].
Length = 306
Score = 72.4 bits (176), Expect = 6e-13
Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 3/166 (1%)
Frame = +1
Query: 544 PMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFV 723
P + +KV+ + Q++ P+YRG H + I++++ + G Y+GL + ++ A+ F V
Sbjct: 21 PFDIVKVR-LQVQSTEKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGV 79
Query: 724 MTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLE---AHKYRN 894
N R + P+N + G A AGA P+++ KTR+Q A Y+
Sbjct: 80 QG---NTLRALGQDSPLNQFLAG---AAAGAIQCVICCPMELAKTRLQLQAVGPARTYKG 133
Query: 895 TWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLL 1032
+ DC +QI R+EGL+ +G + L R + F+ YD + + +
Sbjct: 134 SLDCLVQIYRHEGLRGINRGMVSTLLRETPSFGVYFLTYDVMTRAM 179
Score = 60.1 bits (144), Expect = 3e-09
Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 6/252 (2%)
Frame = +1
Query: 238 ICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAA 417
+ + P + VK +LQ+ + + P+YRG C + ++ V A
Sbjct: 16 VIVGHPFDIVKVRLQV-QSTEKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINA 74
Query: 418 VRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNP 597
+ FG N +R A G+ DS PME K +
Sbjct: 75 LVFGV---QGNTLR-ALGQ-DSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQAVGPAR 129
Query: 598 KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFF---VMTALRNWYRGDNPNK 768
Y+G + +I R +GL+G +G+ +T+L++ + + F VMT GD
Sbjct: 130 TYKGSLDCLVQIYRHEGLRGINRGMVSTLLRETPSFGVYFLTYDVMTRAMGCEPGDRLLV 189
Query: 769 PMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLE-AHKYRNTWDCGLQILRNEGLK 939
P L G +G S P+DV+K+R+Q GL+ +YR DC Q + EG +
Sbjct: 190 PKLLLA----GGTSGITSWLSTYPMDVVKSRLQADGLQGTPRYRGIVDCMRQSYQAEGWQ 245
Query: 940 AFYKGTIPRLGR 975
F +G L R
Sbjct: 246 VFTRGLASTLLR 257
Score = 53.1 bits (126), Expect = 4e-07
Identities = 40/171 (23%), Positives = 65/171 (38%)
Frame = +1
Query: 244 ITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVR 423
I P E KT+LQL Y+G DC+ Q R G+ P V
Sbjct: 109 ICCPMELAKTRLQLQAVGPARTYKGSLDCLVQIYRHEGLRGINRGMVSTLLRETPSFGVY 168
Query: 424 FGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKY 603
F T++ ++ M G PM+ +K + D P+Y
Sbjct: 169 FLTYDVMTRAMGCEPGDRLLVPKLLLAGGTSGITSWLSTYPMDVVKSRLQADGLQGTPRY 228
Query: 604 RGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGD 756
RG +R+ + +G + +GL +T+L+ A F +T + + RG+
Sbjct: 229 RGIVDCMRQSYQAEGWQVFTRGLASTLLRAFPVNAATFATVTVVLTYTRGE 279
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,424,199
Number of extensions: 899660
Number of successful extensions: 3786
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 3603
Number of HSP's successfully gapped: 67
Length of query: 384
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 281
Effective length of database: 12,523,851
Effective search space: 3519202131
Effective search space used: 3519202131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007734
(1153 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005975.1| tricarboxylate transport protein, mitochondrial... 491 e-139
Alignment gi|NP_997000.2| solute carrier family 25 member 47 [Homo sapien... 86 5e-17
Alignment gi|NP_872362.2| solute carrier family 25 member 45 isoform a [H... 79 8e-15
Alignment gi|NP_001070709.1| solute carrier family 25 member 45 isoform b... 78 1e-14
Alignment gi|NP_068605.1| mitochondrial brown fat uncoupling protein 1 [H... 78 2e-14
Alignment gi|NP_085134.1| mitochondrial 2-oxodicarboxylate carrier isofor... 75 9e-14
Alignment gi|NP_003347.1| mitochondrial uncoupling protein 3 isoform UCP3... 75 1e-13
Alignment gi|NP_060345.2| solute carrier family 25 member 38 [Homo sapien... 74 3e-13
Alignment gi|NP_003346.2| mitochondrial uncoupling protein 2 [Homo sapien... 74 3e-13
Alignment gi|NP_001006643.1| calcium-binding mitochondrial carrier protei... 72 7e-13
>ref|NP_005975.1| tricarboxylate transport protein, mitochondrial precursor [Homo
sapiens].
Length = 311
Score = 491 bits (1263), Expect = e-139
Identities = 246/304 (80%), Positives = 250/304 (82%)
Frame = +1
Query: 142 RALXXXXXXXXKAKLTHPGKXXXXXXXXXXXEICITFPTEYVKTQLQLDERSHPPRYRGI 321
RAL KAKLTHPGK EICITFPTEYVKTQLQLDERSHPPRYRGI
Sbjct: 8 RALAAAAPASGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERSHPPRYRGI 67
Query: 322 GDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFGTFEFLSNHMRDAQGRLDSTRXXXX 501
GDCVRQTVRSHGV IPKAAVRFG FEFLSNHMRDAQGRLDSTR
Sbjct: 68 GDCVRQTVRSHGVLGLYRGLSSLLYGSIPKAAVRFGMFEFLSNHMRDAQGRLDSTRGLLC 127
Query: 502 XXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTAT 681
PMETIKVKFIHDQTS NPKYRGFFHGVREIVREQGLKGTYQGLTAT
Sbjct: 128 GLGAGVAEAVVVVCPMETIKVKFIHDQTSPNPKYRGFFHGVREIVREQGLKGTYQGLTAT 187
Query: 682 VLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTR 861
VLKQGSNQAIRFFVMT+LRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTR
Sbjct: 188 VLKQGSNQAIRFFVMTSLRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTR 247
Query: 862 MQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKV 1041
MQGLEAHKYRNTWDCGLQIL+ EGLKAFYKGT+PRLGRVCLDVAIVF+IYDEVVKLLNKV
Sbjct: 248 MQGLEAHKYRNTWDCGLQILKKEGLKAFYKGTVPRLGRVCLDVAIVFVIYDEVVKLLNKV 307
Query: 1042 WKTD 1053
WKTD
Sbjct: 308 WKTD 311
>ref|NP_997000.2| solute carrier family 25 member 47 [Homo sapiens].
Length = 308
Score = 86.3 bits (212), Expect = 5e-17
Identities = 77/296 (26%), Positives = 118/296 (39%), Gaps = 32/296 (10%)
Frame = +1
Query: 238 ICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAA 417
+ + +P + VK ++Q + P+Y GI CVR T V ++
Sbjct: 14 VAVGYPLDTVKVRIQTE-----PKYTGIWHCVRDTYHRERVWGFYRGLSLPVCTVSLVSS 68
Query: 418 VRFGTFEFLSNHM-RDAQGRLDST---RXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQT 585
V FGT+ H+ R G D+ P E KV+ + QT
Sbjct: 69 VSFGTYRHCLAHICRLRYGNPDAKPTKADITLSGCASGLVRVFLTSPTEVAKVR-LQTQT 127
Query: 586 SSN--------------------------PKYRGFFHGVREIVREQGLKGTYQGLTATVL 687
+ PKYRG H + + RE+GL G Y+G +A VL
Sbjct: 128 QAQKQQRRLSASGPLAVPPMCPVPPACPEPKYRGPLHCLATVAREEGLCGLYKGSSALVL 187
Query: 688 KQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ 867
+ G + A F L W ++P P + V G AG + TP+DVIK+R+Q
Sbjct: 188 RDGHSFATYFLSYAVLCEWLSPAGHSRPDVPGVL-VAGGCAGVLAWAVATPMDVIKSRLQ 246
Query: 868 --GLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKL 1029
G +YR C + +R EG + +KG + R +VF+ Y+ V++L
Sbjct: 247 ADGQGQRRYRGLLHCMVTSVREEGPRVLFKGLVLNCCRAFPVNMVVFVAYEAVLRL 302
>ref|NP_872362.2| solute carrier family 25 member 45 isoform a [Homo sapiens].
Length = 288
Score = 79.0 bits (193), Expect = 8e-15
Identities = 70/272 (25%), Positives = 109/272 (40%), Gaps = 14/272 (5%)
Frame = +1
Query: 253 PTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFGT 432
P + VK +LQ YRGI DC+ + R + +V FG
Sbjct: 22 PFDTVKVRLQTQTT-----YRGIVDCMVKIYRHESLLGFFKGMSFPIASIAVVNSVLFGV 76
Query: 433 FE-----FLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQT---- 585
+ + ++ + + S P + IKV+ + +QT
Sbjct: 77 YSNTLLVLTATSHQERRAQPPSYMHIFLAGCTGGFLQAYCLAPFDLIKVR-LQNQTEPRA 135
Query: 586 ---SSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGD 756
S P+Y+G H I RE+G +G ++G A L+ I F L Y +
Sbjct: 136 QPGSPPPRYQGPVHCAASIFREEGPRGLFRGAWALTLRDTPTVGIYFITYEGLCRQYTPE 195
Query: 757 NPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLEAHKYRNTWDCGLQILRNE 930
N ++ V G AG AS TPLD+IK+RMQ GL Y+ DC + +R E
Sbjct: 196 GQNPSSATVL--VAGGFAGIASWVAATPLDMIKSRMQMDGLRRRVYQGMLDCMVSSIRQE 253
Query: 931 GLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVK 1026
GL F++G R A+ F+ Y+ +++
Sbjct: 254 GLGVFFRGVTINSARAFPVNAVTFLSYEYLLR 285
>ref|NP_001070709.1| solute carrier family 25 member 45 isoform b [Homo sapiens].
Length = 246
Score = 78.2 bits (191), Expect = 1e-14
Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 9/170 (5%)
Frame = +1
Query: 544 PMETIKVKFIHDQT-------SSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSN 702
P + IKV+ + +QT S P+Y+G H I RE+G +G ++G A L+
Sbjct: 77 PFDLIKVR-LQNQTEPRAQPGSPPPRYQGPVHCAASIFREEGPRGLFRGAWALTLRDTPT 135
Query: 703 QAIRFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQ--GLE 876
I F L Y + N ++ V G AG AS TPLD+IK+RMQ GL
Sbjct: 136 VGIYFITYEGLCRQYTPEGQNPSSATVL--VAGGFAGIASWVAATPLDMIKSRMQMDGLR 193
Query: 877 AHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVK 1026
Y+ DC + +R EGL F++G R A+ F+ Y+ +++
Sbjct: 194 RRVYQGMLDCMVSSIRQEGLGVFFRGVTINSARAFPVNAVTFLSYEYLLR 243
>ref|NP_068605.1| mitochondrial brown fat uncoupling protein 1 [Homo sapiens].
Length = 307
Score = 77.8 bits (190), Expect = 2e-14
Identities = 62/277 (22%), Positives = 117/277 (42%), Gaps = 8/277 (2%)
Frame = +1
Query: 244 ITFPTEYVKTQLQLDER---SHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKA 414
ITFP + K +LQ+ S RY+G+ + V++ G I A
Sbjct: 30 ITFPLDTAKVRLQVQGECPTSSVIRYKGVLGTITAVVKTEGRMKLYSGLPAGLQRQISSA 89
Query: 415 AVRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSN 594
++R G ++ + + + S P E +KV+ Q S+
Sbjct: 90 SLRIGLYDTVQEFLTAGKETAPSLGSKILAGLTTGGVAVFIGQPTEVVKVRL---QAQSH 146
Query: 595 -----PKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDN 759
P+Y G ++ R I +GL G ++G T +++ ++ + +N
Sbjct: 147 LHGIKPRYTGTYNAYRIIATTEGLTGLWKGTTPNLMRSVIINCTELVTYDLMKEAFVKNN 206
Query: 760 PNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGLK 939
P V IAG + ++P+DV+KTR +Y++ +C +++ NEG
Sbjct: 207 ILADDVPCHL-VSALIAGFCATAMSSPVDVVKTRFINSPPGQYKSVPNCAMKVFTNEGPT 265
Query: 940 AFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKVWKT 1050
AF+KG +P R+ I+F+ ++++ + L+K +T
Sbjct: 266 AFFKGLVPSFLRLGSWNVIMFVCFEQLKRELSKSRQT 302
>ref|NP_085134.1| mitochondrial 2-oxodicarboxylate carrier isoform 1 [Homo sapiens].
Length = 299
Score = 75.5 bits (184), Expect = 9e-14
Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 16/286 (5%)
Frame = +1
Query: 235 EICITFPTEYVKTQLQLDE-RSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPK 411
EIC+ P + VKT+ Q+ + P Y+ + D R + G+ PK
Sbjct: 27 EICLMHPLDVVKTRFQIQRCATDPNSYKSLVDSFRMIFQMEGLFGFYKGILPPILAETPK 86
Query: 412 AAVRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTS- 588
AV+F TFE + L P E +KV ++ +
Sbjct: 87 RAVKFFTFEQYKKLLGYVS--LSPALTFAIAGLGSGLTEAIVVNPFEVVKVGLQANRNTF 144
Query: 589 -SNPKYRGFFHGVREIVREQG--LKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDN 759
P G+ R+I++++G L+G +GLTAT+ + G + F ++N
Sbjct: 145 AEQPSTVGY---ARQIIKKEGWGLQGLNKGLTATLGRHGVFNMVYFGFYYNVKNMI---- 197
Query: 760 PNKPMN--PLIT-----GVFGAIAGAASVFGNTPLDVIKTRMQGLEAH----KYRNTWDC 906
P+N P++ G+ G ++G + N P DV K+R+QG + KYR +
Sbjct: 198 ---PVNKDPILEFWRKFGI-GLLSGTIASVINIPFDVAKSRIQGPQPVPGEIKYRTCFKT 253
Query: 907 GLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKVW 1044
+ + EG+ A YKG +P++ R+ A++ ++Y+ L + W
Sbjct: 254 MATVYQEEGILALYKGLLPKIMRLGPGGAVMLLVYEYTYSWLQENW 299
>ref|NP_003347.1| mitochondrial uncoupling protein 3 isoform UCP3L [Homo sapiens].
Length = 312
Score = 75.1 bits (183), Expect = 1e-13
Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 13/279 (4%)
Frame = +1
Query: 244 ITFPTEYVKTQLQLD------ERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXI 405
+TFP + K +LQ+ + + +YRG+ + VR+ G +
Sbjct: 30 VTFPLDTAKVRLQIQGENQAVQTARLVQYRGVLGTILTMVRTEGPCSPYNGLVAGLQRQM 89
Query: 406 PKAAVRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKF---IH 576
A++R G ++ + S P + +KV+F IH
Sbjct: 90 SFASIRIGLYDSVKQVYTPKGADNSSLTTRILAGCTTGAMAVTCAQPTDVVKVRFQASIH 149
Query: 577 -DQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQG---SNQAIRFFVMTALRNW 744
+ S+ KY G R I RE+G++G ++G +++ + + + ++
Sbjct: 150 LGPSRSDRKYSGTMDAYRTIAREEGVRGLWKGTLPNIMRNAIVNCAEVVTYDILKEKLLD 209
Query: 745 YRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILR 924
Y N P + FGA G + +P+DV+KTR +Y + DC ++++
Sbjct: 210 YHLLTDNFPCH--FVSAFGA--GFCATVVASPVDVVKTRYMNSPPGQYFSPLDCMIKMVA 265
Query: 925 NEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKV 1041
EG AFYKG P R+ ++F+ Y+++ + L KV
Sbjct: 266 QEGPTAFYKGFTPSFLRLGSWNVVMFVTYEQLKRALMKV 304
>ref|NP_060345.2| solute carrier family 25 member 38 [Homo sapiens].
Length = 304
Score = 73.9 bits (180), Expect = 3e-13
Identities = 62/258 (24%), Positives = 103/258 (39%), Gaps = 1/258 (0%)
Frame = +1
Query: 253 PTEYVKTQLQ-LDERSHPPRYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXXIPKAAVRFG 429
P + +KT+LQ L H R G+ + + VR+ + +P + FG
Sbjct: 47 PLDLLKTRLQTLQPSDHGSRRVGMLAVLLKVVRTESLLGLWKGMSPSIVRCVPGVGIYFG 106
Query: 430 TFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKFIHDQTSSNPKYRG 609
T L + +G + P+ IK ++ S Y
Sbjct: 107 TLYSLKQYF--LRGHPPTALESVMLGVGSRSVAGVCMSPITVIKTRY----ESGKYGYES 160
Query: 610 FFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDNPNKPMNPLIT 789
+ +R I +G +G + GLTAT+L+ I +N D + + P+
Sbjct: 161 IYAALRSIYHSEGHRGLFSGLTATLLRDAPFSGIYLMFYNQTKNIVPHDQVDATLIPITN 220
Query: 790 GVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGLKAFYKGTIPRL 969
G AG + P DVIKT MQ L K++ I ++ GL+ F++G IPR
Sbjct: 221 FSCGIFAGILASLVTQPADVIKTHMQ-LYPLKFQWIGQAVTLIFKDYGLRGFFQGGIPRA 279
Query: 970 GRVCLDVAIVFIIYDEVV 1023
R L A+ + +Y+E++
Sbjct: 280 LRRTLMAAMAWTVYEEMM 297
>ref|NP_003346.2| mitochondrial uncoupling protein 2 [Homo sapiens].
Length = 309
Score = 73.9 bits (180), Expect = 3e-13
Identities = 61/272 (22%), Positives = 108/272 (39%), Gaps = 9/272 (3%)
Frame = +1
Query: 244 ITFPTEYVKTQLQLDERSHPP-------RYRGIGDCVRQTVRSHGVXXXXXXXXXXXXXX 402
ITFP + K +LQ+ S P +YRG+ + VR+ G
Sbjct: 30 ITFPLDTAKVRLQIQGESQGPVRATASAQYRGVMGTILTMVRTEGPRSLYNGLVAGLQRQ 89
Query: 403 IPKAAVRFGTFEFLSNHMRDAQGRLDSTRXXXXXXXXXXXXXXXXXXPMETIKVKF-IHD 579
+ A+VR G ++ + S P + +KV+F
Sbjct: 90 MSFASVRIGLYDSVKQFYTKGSEHA-SIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA 148
Query: 580 QTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTALRNWYRGDN 759
+ +Y+ + + I RE+G +G ++G + V + +++ N
Sbjct: 149 RAGGGRRYQSTVNAYKTIAREEGFRGLWKGTSPNVARNAIVNCAELVTYDLIKDALLKAN 208
Query: 760 PNKPMNPL-ITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILRNEGL 936
P T FGA G + +P+DV+KTR +Y + C L +L+ EG
Sbjct: 209 LMTDDLPCHFTSAFGA--GFCTTVIASPVDVVKTRYMNSALGQYSSAGHCALTMLQKEGP 266
Query: 937 KAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLL 1032
+AFYKG +P R+ ++F+ Y+++ + L
Sbjct: 267 RAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 298
Score = 63.2 bits (152), Expect = 4e-10
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Frame = +1
Query: 544 PMETIKVKFIHDQTSSNP-------KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSN 702
P++T KV+ S P +YRG + +VR +G + Y GL A + +Q S
Sbjct: 33 PLDTAKVRLQIQGESQGPVRATASAQYRGVMGTILTMVRTEGPRSLYNGLVAGLQRQMSF 92
Query: 703 QAIRFFVMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLE-- 876
++R + +++ +Y + + + + G+ GA +V P DV+K R Q
Sbjct: 93 ASVRIGLYDSVKQFYTKGSEHASIGSRLLA--GSTTGALAVAVAQPTDVVKVRFQAQARA 150
Query: 877 --AHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNK 1038
+Y++T + I R EG + +KGT P + R + + YD + L K
Sbjct: 151 GGGRRYQSTVNAYKTIAREEGFRGLWKGTSPNVARNAIVNCAELVTYDLIKDALLK 206
>ref|NP_001006643.1| calcium-binding mitochondrial carrier protein SCaMC-2 isoform c [Homo
sapiens].
Length = 489
Score = 72.4 bits (176), Expect = 7e-13
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 1/177 (0%)
Frame = +1
Query: 544 PMETIKVKF-IHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFF 720
P++ +KV +H S+N G G +++RE G + ++G VLK AI+F
Sbjct: 226 PLDRLKVLMQVHASRSNN---MGIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFM 282
Query: 721 VMTALRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTW 900
++ D ++ + V G++AGA + P++V+KTRM + +Y
Sbjct: 283 AYEQIKRLVGSDQETLRIHERL--VAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGML 340
Query: 901 DCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEVVKLLNKVWKTD*AVGAA 1071
DC +IL EG+ AFYKG +P + + I +Y+ L W AV +A
Sbjct: 341 DCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYE----TLKNAWLQHYAVNSA 393
Score = 48.9 bits (115), Expect = 9e-06
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 9/168 (5%)
Frame = +1
Query: 544 PMETIKVKFIHDQTSSNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFV 723
PME +K + +T +Y G R I+ +G+ Y+G +L I V
Sbjct: 320 PMEVLKTRMALRKTG---QYSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAV 376
Query: 724 MTALRN-WYRGDNPNKPMNPLITGVF-----GAIAGAASVFGNTPLDVIKTRMQG---LE 876
L+N W + + +N GVF G ++ + PL +++TRMQ +E
Sbjct: 377 YETLKNAWLQ----HYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQASIE 432
Query: 877 AHKYRNTWDCGLQILRNEGLKAFYKGTIPRLGRVCLDVAIVFIIYDEV 1020
ILR EG Y+G P +V V+I +++Y+ +
Sbjct: 433 GAPEVTMSSLFKHILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENL 480
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,640,973
Number of extensions: 1079031
Number of successful extensions: 4478
Number of sequences better than 1.0e-05: 62
Number of HSP's gapped: 4263
Number of HSP's successfully gapped: 85
Length of query: 384
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,868,908
Effective search space: 4163294240
Effective search space used: 4163294240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007734
(1153 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 385 e-104
Sscrofa_Chr01 70 3e-09
>Sscrofa_Chr14
|| Length = 153851969
Score = 385 bits (194), Expect = e-104
Identities = 211/214 (98%), Gaps = 2/214 (0%)
Strand = Plus / Minus
Query: 942 attctacaagggcaccatcccccgcctgggtcgggtctgcctggatgtggccattgtgtt 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54542212 attctacaagggcaccatcccccgcctgggtcgggtctgcctggatgtggccattgtgtt 54542153
Query: 1002 catcatttatgatgaggtggtgaagctgctcaacaaagtgtggaagacagactgagccgt 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54542152 catcatttatgatgaggtggtgaagctgctcaacaaagtgtggaagacagactgagccgt 54542093
Query: 1062 gggggctgcccccagcgcccccttatcacaattcc-atgcagtcgtgccaaaaagcccct 1120
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 54542092 gggggctgcccccagcgcccccttatcacaattccaatgcagtcgtgccaaaaggcccct 54542033
Query: 1121 ccccat-ccttgcactccgtggcccagggctgac 1153
|||||| |||||||||||||||||||||||||||
Sbjct: 54542032 ccccatcccttgcactccgtggcccagggctgac 54541999
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 421 aggttcgggacgttcgagtttctcagcaaccacatgcgggacgcccagggacggctggac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54543660 aggttcgggacgttcgagtttctcagcaaccacatgcgggacgcccagggacggctggac 54543601
Query: 481 agcacgcgcgggctactgtgcggcctgggagccggtgtggccgaggccgtggtggttgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54543600 agcacgcgcgggctactgtgcggcctgggagccggtgtggccgaggccgtggtggttgtg 54543541
Query: 541 tgccccatggagactatcaaggtg 564
||||||||||||||||||||||||
Sbjct: 54543540 tgccccatggagactatcaaggtg 54543517
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 750 aggggacaaccccaacaagcccatgaacccgctgatcactggtgtgtttggagcaattgc 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54542713 aggggacaaccccaacaagcccatgaacccgctgatcactggtgtgtttggagcaattgc 54542654
Query: 810 gggagcagctagtgtcttcgggaacactcctctggatgtgatcaagacccggatgcagg 868
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54542653 gggagcagctagtgtcttcgggaacactcctctggatgtgatcaagacccggatgcagg 54542595
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 211 gcaggcggcctggcgggcggcatcgaaatctgcatcaccttccccaccgagtacgtgaag 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54544031 gcaggcggcctggcgggcggcatcgaaatctgcatcaccttccccaccgagtacgtgaag 54543972
Query: 271 acgcagctgcagctggacgagcgctcgcacccgccgcgctaccggggcatcgg 323
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54543971 acgcagctgcagctggacgagcgctcgcacccgccgcgctaccggggcatcgg 54543919
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 645 agggctgaaggggacgtaccagggcctcacagccactgtgctgaagcagggatccaacca 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54542910 agggctgaaggggacgtaccagggcctcacagccactgtgctgaagcagggatccaacca 54542851
Query: 705 ggccatccgcttcttcgttatgaccgccttgcgcaactggtaccgagg 752
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54542850 ggccatccgcttcttcgttatgaccgccttgcgcaactggtaccgagg 54542803
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 322 ggggactgcgtgcggcagacagtccgcagccatggcgtcctgggcctgtaccgcggcctc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54543845 ggggactgcgtgcggcagacagtccgcagccatggcgtcctgggcctgtaccgcggcctc 54543786
Query: 382 agctccctgctctacggctccatccccaaggcggctgtcaggt 424
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54543785 agctccctgctctacggctccatccccaaggcggctgtcaggt 54543743
Score = 190 bits (96), Expect = 1e-45
Identities = 106/108 (98%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 43 acccataaccggcgccgccgccgcggttgcgaccgagcacggcagctcggacccgaggcc 102
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 54544449 acccataaccggc-ccgctgccgcggttgcgaccgagcacggcagctcggacccgaggcc 54544391
Query: 103 gccgccgggccccctgccccgtccgccatggccgacccccgcgctctt 150
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54544390 gccgccgggccccctgccccgtccgccatggccgacccccgcgctctt 54544343
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 560 aggtgaagttcatccatgaccagacctcttccaaccccaaatacagaggattcttccacg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54543138 aggtgaagttcatccatgaccagacctcttccaaccccaaatacagaggattcttccacg 54543079
Query: 620 gggtcagagaaattgtgcgggaacaagg 647
||||||||||||||||||||||||||||
Sbjct: 54543078 gggtcagagaaattgtgcgggaacaagg 54543051
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 863 tgcagggcctggaggcacataaataccgcaatacctgggactgcggcctgcagatcctga 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54542522 tgcagggcctggaggcacataaataccgcaatacctgggactgcggcctgcagatcctga 54542463
Query: 923 ggaatgaggggctcaaggc 941
|||||||||||||||||||
Sbjct: 54542462 ggaatgaggggctcaaggc 54542444
>Sscrofa_Chr01
|| Length = 315321322
Score = 69.9 bits (35), Expect = 3e-09
Identities = 75/87 (86%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 973 cgggtctgcctggatgtggccattgtgttcatcatttatgatgaggtggtgaagctgctc 1032
|||| ||||||||| |||||| ||||||| ||| || || | ||||| ||||||||||
Sbjct: 283042769 cgggcctgcctggacgtggcccgcgtgttcagcatctacgaaggggtggagaagctgctc 283042828
Query: 1033 aacaaagtgtggaagacagactgagcc 1059
||||||||||||||||| |||||||||
Sbjct: 283042829 aacaaagtgtggaagac-gactgagcc 283042854
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,458,819
Number of extensions: 144
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 11
Length of query: 1153
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1132
Effective length of database: 2,808,413,156
Effective search space: 3179123692592
Effective search space used: 3179123692592
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)