Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007735
(1431 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039367.1| macrosialin [Bos taurus]. 323 2e-88
Alignment gi|NP_001068592.1| lysosome-associated membrane glycoprotein 1 ... 58 2e-08
Alignment gi|NP_001106715.1| lysosomal-associated membrane protein 2 isof... 52 1e-06
Alignment gi|NP_001029742.1| lysosomal-associated membrane protein 2 isof... 51 2e-06
>ref|NP_001039367.1| macrosialin [Bos taurus].
Length = 335
Score = 323 bits (828), Expect = 2e-88
Identities = 167/256 (65%), Positives = 186/256 (72%), Gaps = 3/256 (1%)
Frame = +1
Query: 400 SHKSTTATHNPATATSH---TVHPTSNSTAXXXXXXXXXXXXXXXXXXXXXXXXXKEVKG 570
S +S TATH+PAT TSH TVHPTSN TA KE G
Sbjct: 81 SSESPTATHSPATTTSHQNTTVHPTSNITATSPGPSTRSPHPEPPPSPSPSPGS-KEAIG 139
Query: 571 DYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLLSF 750
DYTW+NGSQPCV LQAQIQIRVLYPTQGGG+AWGISV+NPN+TK QGGCEG H+HLLLSF
Sbjct: 140 DYTWSNGSQPCVRLQAQIQIRVLYPTQGGGEAWGISVLNPNRTKAQGGCEGTHSHLLLSF 199
Query: 751 PYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSCR 930
P GQLSFGFKQ+PL+S VYLNYMA+E+NVSFP AVQWTFSVQNSSLR+LQTPLG S+SCR
Sbjct: 200 PSGQLSFGFKQDPLQSAVYLNYMAVEYNVSFPQAVQWTFSVQNSSLRDLQTPLGHSFSCR 259
Query: 931 NASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPXXXXXXXXXXXXXMF 1110
NASII+SPA HLDLLSLKLQAAQL P+GAFGP+F CP+DKS + P +
Sbjct: 260 NASIIVSPALHLDLLSLKLQAAQLSPSGAFGPSFSCPNDKSILLPLIIGLILLGLLTLVL 319
Query: 1111 VTFPFXXXXXXXYQLL 1158
VTF YQ L
Sbjct: 320 VTFCIIRRRPPTYQPL 335
Score = 72.4 bits (176), Expect = 9e-13
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +1
Query: 118 MRLAVIFSGALLGLLAAQDTGNECPHKKSATLLPSFTV 231
MRLAV FSGALLGLLAAQ TGN+CPHKKSATLLPSFTV
Sbjct: 1 MRLAVFFSGALLGLLAAQGTGNDCPHKKSATLLPSFTV 38
>ref|NP_001068592.1| lysosome-associated membrane glycoprotein 1 precursor [Bos taurus].
Length = 409
Score = 58.2 bits (139), Expect = 2e-08
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 2/164 (1%)
Frame = +1
Query: 574 YTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLL-SF 750
Y + + C+ +Q+ V Y VNPNKT G C A L L S
Sbjct: 214 YNVSGSNGTCLLASMGLQLNVTYRRVDNKTVTREFNVNPNKTTFGGNCSATLATLELHSE 273
Query: 751 PYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSCR 930
L+ F S V+L ++ N++ P A + +F+ NSSLR LQ G SY C
Sbjct: 274 NLLLLALQFVMNESSSRVFLQ--GVQLNLTLPDAKEGSFTATNSSLRALQATAGNSYKCN 331
Query: 931 -NASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNM 1059
+ ++ +F L++ + LQA ++ FGP C D+++M
Sbjct: 332 AEQRLRVTSSFSLNMFRVWLQAFRV-DGDKFGPVEECQLDENSM 374
>ref|NP_001106715.1| lysosomal-associated membrane protein 2 isoform 1 [Bos taurus].
Length = 407
Score = 52.4 bits (124), Expect = 1e-06
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Frame = +1
Query: 556 KEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAH 735
K V G Y+ N + C+ +Q+ + + K + +NPN T G C+ A
Sbjct: 214 KPVVGSYSVVNSNGTCLLATMGLQLNITHD-----KVASVFNINPNTTNATGSCQPQTAL 268
Query: 736 LLLS---FPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTP 906
L LS Y F K E + YL E NVS +S+ N++L P
Sbjct: 269 LRLSSSNIKYLDFVFAVKNE---NRFYLK----EVNVSMILVNGSVYSISNTNLSYWDAP 321
Query: 907 LGQSYSC-RNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSN 1056
LG SY C + ++ +S AF ++ L++Q + G + C +D N
Sbjct: 322 LGSSYMCNKEQTVSVSGAFQINTFDLRVQPFSV-TEGKYSTAQDCSADDDN 371
>ref|NP_001029742.1| lysosomal-associated membrane protein 2 isoform 2 [Bos taurus].
Length = 407
Score = 51.2 bits (121), Expect = 2e-06
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 4/149 (2%)
Frame = +1
Query: 556 KEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAH 735
K V G Y+ N + C+ +Q+ + + K + +NPN T G C+ A
Sbjct: 214 KPVVGSYSVVNSNGTCLLATMGLQLNITHD-----KVASVFNINPNTTNATGSCQPQTAL 268
Query: 736 LLLS---FPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTP 906
L LS Y F K E + YL E NVS +S+ N++L P
Sbjct: 269 LRLSSSNIKYLDFVFAVKNE---NRFYLK----EVNVSMILVNGSVYSISNTNLSYWDAP 321
Query: 907 LGQSYSC-RNASIILSPAFHLDLLSLKLQ 990
LG SY C + ++ +S AF ++ L++Q
Sbjct: 322 LGSSYMCNKEQTVSVSGAFQINTFDLRVQ 350
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,192,363
Number of extensions: 1619782
Number of successful extensions: 7060
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6819
Number of HSP's successfully gapped: 5
Length of query: 477
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 371
Effective length of database: 14,174,046
Effective search space: 5258571066
Effective search space used: 5258571066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007735
(1431 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849733.1| PREDICTED: similar to CD68 antigen isoform 2 [C... 264 2e-70
Alignment gi|XP_546594.1| PREDICTED: similar to CD68 antigen isoform 1 [C... 256 3e-68
Alignment gi|XP_534193.2| PREDICTED: similar to Lysosome-associated membr... 59 1e-08
Alignment gi|XP_856022.1| PREDICTED: similar to Lysosome-associated membr... 59 1e-08
Alignment gi|XP_848889.1| PREDICTED: similar to lysosomal-associated memb... 51 2e-06
>ref|XP_849733.1| PREDICTED: similar to CD68 antigen isoform 2 [Canis familiaris].
Length = 329
Score = 264 bits (674), Expect = 2e-70
Identities = 140/267 (52%), Positives = 165/267 (61%), Gaps = 14/267 (5%)
Frame = +1
Query: 400 SHKSTTATHNPATATSH---TVHPT-SNSTAXXXXXXXXXXXXXXXXXXXXXXXXX---- 555
SH T TH T H T+HPT SNST+
Sbjct: 63 SHAPNTTTHQAPTTPGHRNTTIHPTTSNSTSNTTGTTGTGKPHTSTSYTQPGPGPRPPPP 122
Query: 556 ------KEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGC 717
++ GDYTWT GSQPC LQA+IQI V+YPTQ GG+AWGISV+NPN TK G C
Sbjct: 123 SPGPGPQDAIGDYTWTTGSQPCARLQARIQIGVVYPTQAGGQAWGISVLNPNSTKPWGDC 182
Query: 718 EGAHAHLLLSFPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLREL 897
+GA HLLLSFP+GQLSFGF QEP + +VYL+Y+A+++NVSFP A QWTFS QN+SLR L
Sbjct: 183 DGARPHLLLSFPFGQLSFGFTQEPQQGSVYLDYLALQYNVSFPQAAQWTFSGQNASLRAL 242
Query: 898 QTPLGQSYSCRNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPXXXX 1077
Q PLGQS+SCRNASI+L+PA LDLL LKLQAAQLPP+GAFGP+F CPS+ N+ P
Sbjct: 243 QAPLGQSFSCRNASILLTPALRLDLLHLKLQAAQLPPSGAFGPSFSCPSEHFNLLPLIVG 302
Query: 1078 XXXXXXXXXMFVTFPFXXXXXXXYQLL 1158
VTF YQ L
Sbjct: 303 VISLGLLALALVTFCIIRRRPPTYQPL 329
Score = 61.2 bits (147), Expect = 2e-09
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = +1
Query: 118 MRLAVIFSGALLGLLAAQDTGNECPHKKSATLLPSFTV 231
MR AV F GAL+GLLAAQ T ++CPHKKSATLLPSFTV
Sbjct: 1 MRPAVFFLGALVGLLAAQGTRSDCPHKKSATLLPSFTV 38
>ref|XP_546594.1| PREDICTED: similar to CD68 antigen isoform 1 [Canis familiaris].
Length = 337
Score = 256 bits (655), Expect = 3e-68
Identities = 140/275 (50%), Positives = 165/275 (60%), Gaps = 22/275 (8%)
Frame = +1
Query: 400 SHKSTTATHNPATATSH---TVHPT-SNSTAXXXXXXXXXXXXXXXXXXXXXXXXX---- 555
SH T TH T H T+HPT SNST+
Sbjct: 63 SHAPNTTTHQAPTTPGHRNTTIHPTTSNSTSNTTGTTGTGKPHTSTSYTQPGPGPRPPPP 122
Query: 556 ------KEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGK--------AWGISVVNPN 693
++ GDYTWT GSQPC LQA+IQI V+YPTQ GG+ AWGISV+NPN
Sbjct: 123 SPGPGPQDAIGDYTWTTGSQPCARLQARIQIGVVYPTQAGGQVEPPVGAGAWGISVLNPN 182
Query: 694 KTKVQGGCEGAHAHLLLSFPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSV 873
TK G C+GA HLLLSFP+GQLSFGF QEP + +VYL+Y+A+++NVSFP A QWTFS
Sbjct: 183 STKPWGDCDGARPHLLLSFPFGQLSFGFTQEPQQGSVYLDYLALQYNVSFPQAAQWTFSG 242
Query: 874 QNSSLRELQTPLGQSYSCRNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKS 1053
QN+SLR LQ PLGQS+SCRNASI+L+PA LDLL LKLQAAQLPP+GAFGP+F CPS+
Sbjct: 243 QNASLRALQAPLGQSFSCRNASILLTPALRLDLLHLKLQAAQLPPSGAFGPSFSCPSEHF 302
Query: 1054 NMRPXXXXXXXXXXXXXMFVTFPFXXXXXXXYQLL 1158
N+ P VTF YQ L
Sbjct: 303 NLLPLIVGVISLGLLALALVTFCIIRRRPPTYQPL 337
Score = 61.2 bits (147), Expect = 2e-09
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = +1
Query: 118 MRLAVIFSGALLGLLAAQDTGNECPHKKSATLLPSFTV 231
MR AV F GAL+GLLAAQ T ++CPHKKSATLLPSFTV
Sbjct: 1 MRPAVFFLGALVGLLAAQGTRSDCPHKKSATLLPSFTV 38
>ref|XP_534193.2| PREDICTED: similar to Lysosome-associated membrane glycoprotein 1
precursor (LAMP-1) (CD107a antigen) isoform 1 [Canis
familiaris].
Length = 413
Score = 58.9 bits (141), Expect = 1e-08
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 2/164 (1%)
Frame = +1
Query: 574 YTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHL-LLSF 750
Y + + C+ +Q+ V Y + + +NPNKT G C L L S
Sbjct: 218 YNVSGANGTCLLASMGLQLNVTYKKKDNTTVVKVVSINPNKTTAGGSCGAQLVTLELRSE 277
Query: 751 PYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSCR 930
L+F F S +L I+ N++ P A TF N+SLR LQ +G SY C
Sbjct: 278 SVTLLAFQFGMNASTSRFFLQ--GIQLNMTLPDARDPTFKAGNNSLRALQATIGNSYKCN 335
Query: 931 -NASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNM 1059
+ ++ AF ++++ + +QA Q+ FG C D+++M
Sbjct: 336 AGEHVQVTEAFSVNIIKVWVQAFQV-QGDKFGSVEECQLDENSM 378
>ref|XP_856022.1| PREDICTED: similar to Lysosome-associated membrane glycoprotein 1
precursor (LAMP-1) (CD107a antigen) isoform 2 [Canis
familiaris].
Length = 374
Score = 58.9 bits (141), Expect = 1e-08
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 2/164 (1%)
Frame = +1
Query: 574 YTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHL-LLSF 750
Y + + C+ +Q+ V Y + + +NPNKT G C L L S
Sbjct: 179 YNVSGANGTCLLASMGLQLNVTYKKKDNTTVVKVVSINPNKTTAGGSCGAQLVTLELRSE 238
Query: 751 PYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSCR 930
L+F F S +L I+ N++ P A TF N+SLR LQ +G SY C
Sbjct: 239 SVTLLAFQFGMNASTSRFFLQ--GIQLNMTLPDARDPTFKAGNNSLRALQATIGNSYKCN 296
Query: 931 -NASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNM 1059
+ ++ AF ++++ + +QA Q+ FG C D+++M
Sbjct: 297 AGEHVQVTEAFSVNIIKVWVQAFQV-QGDKFGSVEECQLDENSM 339
>ref|XP_848889.1| PREDICTED: similar to lysosomal-associated membrane protein 3 [Canis
familiaris].
Length = 479
Score = 51.2 bits (121), Expect = 2e-06
Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 3/225 (1%)
Frame = +1
Query: 400 SHKSTTATH--NPATATSHTVHPTSNSTAXXXXXXXXXXXXXXXXXXXXXXXXXKEVKGD 573
SHKS +TH P TA +T S +T G
Sbjct: 245 SHKSAQSTHAPGPTTAAHNTTQTASPATPASGPTLAPQPSSPKT--------------GI 290
Query: 574 YTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLLSFP 753
Y NGS+ C+ + I++ V T+ ++PN T+ G C ++LLL+F
Sbjct: 291 YQVLNGSRLCIKAEMGIELMV-QDTKSVFSPQRYFNIDPNATQTSGNCGSQKSNLLLNFQ 349
Query: 754 YGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSC-R 930
G ++ F ++ +++ Y+N + VS P + + SS+ +T +G S+ C
Sbjct: 350 GGFVNLTFLKD--ENSYYINEVGAYLAVSNPEKI---YQGMKSSVVMFETGVGHSFKCVS 404
Query: 931 NASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRP 1065
SI LS L ++++ QA FG C SD + + P
Sbjct: 405 EQSIQLSTHLQLKTMNVQFQAFDF-EDDHFGNVDECSSDYTVVLP 448
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,136,776
Number of extensions: 1608849
Number of successful extensions: 6987
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6768
Number of HSP's successfully gapped: 8
Length of query: 477
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 370
Effective length of database: 15,307,552
Effective search space: 5663794240
Effective search space used: 5663794240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007735
(1431 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128950.1| PREDICTED: macrosialin-like isoform 1 [Sus s... 549 e-156
Alignment gi|XP_003128951.1| PREDICTED: macrosialin-like isoform 2 [Sus s... 419 e-117
Alignment gi|XP_003131995.1| PREDICTED: macrosialin-like [Sus scrofa]. 329 3e-90
Alignment gi|XP_003361281.1| PREDICTED: macrosialin-like [Sus scrofa]. 293 2e-79
Alignment gi|NP_001011507.1| lysosome-associated membrane glycoprotein 1 ... 62 6e-10
Alignment gi|XP_003358746.1| PREDICTED: lysosome-associated membrane glyc... 51 1e-06
Alignment gi|XP_001926493.1| PREDICTED: lysosome-associated membrane glyc... 49 5e-06
Alignment gi|XP_003360473.1| PREDICTED: lysosome-associated membrane glyc... 49 9e-06
>ref|XP_003128950.1| PREDICTED: macrosialin-like isoform 1 [Sus scrofa].
Length = 400
Score = 549 bits (1415), Expect = e-156
Identities = 285/386 (73%), Positives = 285/386 (73%)
Frame = +1
Query: 1 KSKIYFLFFQTKAEGKGLIEQAAGRDTEPRWTLGGGCSVMRLAVIFSGALLGLLAAQDTG 180
KSKIYFLFFQTKAEGKGLIEQ AGRDTEPRWTLGGGCSVMRLAVIFSGALLGLLAAQDTG
Sbjct: 15 KSKIYFLFFQTKAEGKGLIEQVAGRDTEPRWTLGGGCSVMRLAVIFSGALLGLLAAQDTG 74
Query: 181 NECPHKKSATLLPSFTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
NECPHKKSATLLPSFTV
Sbjct: 75 NECPHKKSATLLPSFTVTPTATESTGTPTATESTGTPTATESTGTPTATESTASPETTRH 134
Query: 361 XXXXXXXXXXXXPSHKSTTATHNPATATSHTVHPTSNSTAXXXXXXXXXXXXXXXXXXXX 540
PSHKSTTATHNPATATSHTVHPTSNSTA
Sbjct: 135 RSTTQRTTTAGTPSHKSTTATHNPATATSHTVHPTSNSTATSPESSTGSPHPGPPPPTPS 194
Query: 541 XXXXXKEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCE 720
KEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCE
Sbjct: 195 PSPCSKEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCE 254
Query: 721 GAHAHLLLSFPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQ 900
GAHAHLLLSFPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQ
Sbjct: 255 GAHAHLLLSFPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQ 314
Query: 901 TPLGQSYSCRNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPXXXXX 1080
TPLGQSYSCRNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRP
Sbjct: 315 TPLGQSYSCRNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPLIISL 374
Query: 1081 XXXXXXXXMFVTFPFXXXXXXXYQLL 1158
MFVTFPF YQLL
Sbjct: 375 ILIGIIISMFVTFPFIRRRRRIYQLL 400
>ref|XP_003128951.1| PREDICTED: macrosialin-like isoform 2 [Sus scrofa].
Length = 320
Score = 419 bits (1076), Expect = e-117
Identities = 209/254 (82%), Positives = 209/254 (82%)
Frame = +1
Query: 397 PSHKSTTATHNPATATSHTVHPTSNSTAXXXXXXXXXXXXXXXXXXXXXXXXXKEVKGDY 576
PSHKSTTATHNPATATSHTVHPTSNSTA KEVKGDY
Sbjct: 67 PSHKSTTATHNPATATSHTVHPTSNSTATSPESSTGSPHPGPPPPTPSPSPCSKEVKGDY 126
Query: 577 TWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLLSFPY 756
TWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLLSFPY
Sbjct: 127 TWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLLSFPY 186
Query: 757 GQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSCRNA 936
GQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSCRNA
Sbjct: 187 GQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSCRNA 246
Query: 937 SIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPXXXXXXXXXXXXXMFVT 1116
SIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRP MFVT
Sbjct: 247 SIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPLIISLILIGIIISMFVT 306
Query: 1117 FPFXXXXXXXYQLL 1158
FPF YQLL
Sbjct: 307 FPFIRRRRRIYQLL 320
>ref|XP_003131995.1| PREDICTED: macrosialin-like [Sus scrofa].
Length = 291
Score = 329 bits (843), Expect = 3e-90
Identities = 167/256 (65%), Positives = 185/256 (72%), Gaps = 3/256 (1%)
Frame = +1
Query: 400 SHKSTTATHNPATATSH---TVHPTSNSTAXXXXXXXXXXXXXXXXXXXXXXXXXKEVKG 570
SH TT THNPAT TSH TVHPTS+STA +E G
Sbjct: 36 SHGPTTVTHNPATTTSHGNATVHPTSSSTATSPGSSTRPPHPGPPPPSPSPSPGSQEAIG 95
Query: 571 DYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLLSF 750
DYTWTNGSQPCV LQAQIQIRVLYPTQGGG+AWGISV+NPNKTK GGCEGAH H+ LSF
Sbjct: 96 DYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSF 155
Query: 751 PYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSCR 930
PYGQL+FGFKQ+P +STVYLNYMA+E+NVSFP A QWTFSVQNSSLR+LQTP+G+SYSCR
Sbjct: 156 PYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCR 215
Query: 931 NASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPXXXXXXXXXXXXXMF 1110
NASIILS AFHLDLLSLKLQAAQLPPTG FGP+F CPSD++ + P +
Sbjct: 216 NASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQTILLPLIIGLIFLGLLILVL 275
Query: 1111 VTFPFXXXXXXXYQLL 1158
VTF YQ L
Sbjct: 276 VTFCIIRRRPPAYQPL 291
>ref|XP_003361281.1| PREDICTED: macrosialin-like [Sus scrofa].
Length = 282
Score = 293 bits (750), Expect = 2e-79
Identities = 156/258 (60%), Positives = 174/258 (67%), Gaps = 5/258 (1%)
Frame = +1
Query: 400 SHKSTTATHNPATATSH---TVHPTSNSTAXXXXXXXXXXXXXXXXXXXXXXXXX--KEV 564
SH TT THNPAT TSH TVHPTS+STA +E
Sbjct: 36 SHGPTTVTHNPATTTSHGNATVHPTSSSTATSPGSSTRPPHPGPPPPPPSPSPSPGSQEA 95
Query: 565 KGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLL 744
GDYTWTNGSQPCV LQAQIQIRVLYPTQGGG+AWGISV+NPNKTK GGCEGAH H+ L
Sbjct: 96 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 155
Query: 745 SFPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYS 924
SFPYGQL+FGFKQ+P +STVYLNYMA+E+NVSFP A R+LQTP+G+SYS
Sbjct: 156 SFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAA-----------RDLQTPVGRSYS 204
Query: 925 CRNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPXXXXXXXXXXXXX 1104
CRNASIILS AFHLDLLSLKLQAAQLPPTG FGP+F CPSD++ + P
Sbjct: 205 CRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQTILLPLIIGLIFLGLLIL 264
Query: 1105 MFVTFPFXXXXXXXYQLL 1158
+ VTF YQ L
Sbjct: 265 VLVTFCIIRRRPPAYQPL 282
>ref|NP_001011507.1| lysosome-associated membrane glycoprotein 1 [Sus scrofa].
Length = 413
Score = 62.4 bits (150), Expect = 6e-10
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 2/164 (1%)
Frame = +1
Query: 574 YTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHL-LLSF 750
Y + + C+ +Q+ V Y T+ +NPNKT G C L L
Sbjct: 218 YNVSGANGTCLLASMGLQLNVTYRTKDNTTVTRGLNINPNKTTFGGSCSAQLVTLELQGE 277
Query: 751 PYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSCR 930
L+ F S V+L ++ N++ P A +FS NSSLR LQ G SY CR
Sbjct: 278 SLRLLALQFALNTSSSRVFLQ--GVQLNMTLPDARDPSFSAANSSLRALQATAGNSYKCR 335
Query: 931 NAS-IILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNM 1059
+ + ++ AF L++ +++QA ++ FGP C D+++M
Sbjct: 336 SEQRLQVTEAFALNVFQVRVQAFRV-DGDKFGPAEECQLDENSM 378
>ref|XP_003358746.1| PREDICTED: lysosome-associated membrane glycoprotein 3-like [Sus
scrofa].
Length = 430
Score = 51.2 bits (121), Expect = 1e-06
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 1/167 (0%)
Frame = +1
Query: 568 GDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLLS 747
G Y NGS+ C+ + I++ V TQ ++PN T+ G C + LLL+
Sbjct: 240 GIYQVLNGSKLCIKAEMGIELTV-QDTQSVFSPQRYFNIDPNTTQASGNCGSRKSKLLLN 298
Query: 748 FPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSC 927
F G ++ F ++ +++ Y++ + VS P V + +++ +T +G S+ C
Sbjct: 299 FQGGFVNLTFTKD--ENSYYVSGVGAYLTVSNPEKV---YQGMKNAVVMFETMIGHSFKC 353
Query: 928 -RNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRP 1065
SI LSP L+ ++++LQA FG C SD + + P
Sbjct: 354 VSEQSIQLSPHLQLNTMNVQLQAFDF-EDDHFGNVDECSSDYTIVLP 399
>ref|XP_001926493.1| PREDICTED: lysosome-associated membrane glycoprotein 2 isoform 1 [Sus
scrofa].
Length = 411
Score = 49.3 bits (116), Expect = 5e-06
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 4/171 (2%)
Frame = +1
Query: 556 KEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAH 735
K G Y+ T+ + C+ +Q+ + TQ K + +NPN T G C A
Sbjct: 218 KPETGSYSVTSSNGTCLLANMGLQLNI---TQD--KVASVININPNTTNATGNCHSKTAL 272
Query: 736 LLLS---FPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTP 906
L LS Y F K + + YL E NVS FS+ N++L P
Sbjct: 273 LRLSGSNIKYLDFVFAVKND---NRFYLK----EVNVSVYLVNGSVFSIANNNLSYWDAP 325
Query: 907 LGQSYSC-RNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSN 1056
LG SY C + ++ +S AF ++ +L++Q + G + C +D N
Sbjct: 326 LGSSYMCNKEQTVSVSGAFQINTFNLRVQPFSV-MEGKYSTAQDCSADDDN 375
>ref|XP_003360473.1| PREDICTED: lysosome-associated membrane glycoprotein 2 [Sus
scrofa].
Length = 411
Score = 48.5 bits (114), Expect = 9e-06
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 4/149 (2%)
Frame = +1
Query: 556 KEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAH 735
K G Y+ T+ + C+ +Q+ + TQ K + +NPN T G C A
Sbjct: 218 KPETGSYSVTSSNGTCLLANMGLQLNI---TQD--KVASVININPNTTNATGNCHSKTAL 272
Query: 736 LLLS---FPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTP 906
L LS Y F K + + YL E NVS FS+ N++L P
Sbjct: 273 LRLSGSNIKYLDFVFAVKND---NRFYLK----EVNVSVYLVNGSVFSIANNNLSYWDAP 325
Query: 907 LGQSYSC-RNASIILSPAFHLDLLSLKLQ 990
LG SY C + ++ +S AF ++ +L++Q
Sbjct: 326 LGSSYMCNKEQTVSVSGAFQINTFNLRVQ 354
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,101,058
Number of extensions: 1124062
Number of successful extensions: 4569
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4421
Number of HSP's successfully gapped: 9
Length of query: 477
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 374
Effective length of database: 8,779,541
Effective search space: 3283548334
Effective search space used: 3283548334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007735
(1431 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033983.1| macrosialin [Mus musculus]. 268 8e-72
Alignment gi|NP_032158.2| glutamine repeat protein 1 [Mus musculus]. 52 9e-07
Alignment gi|NP_034814.2| lysosome-associated membrane glycoprotein 1 [Mu... 52 2e-06
>ref|NP_033983.1| macrosialin [Mus musculus].
Length = 335
Score = 268 bits (685), Expect = 8e-72
Identities = 144/237 (60%), Positives = 159/237 (67%), Gaps = 19/237 (8%)
Frame = +1
Query: 412 TTATHNPATATSH--------TVHPTSNSTAXXXXXXXXXXXXXXXXXXXXXXXXXKEVK 567
TT THNPAT TSH TV PT+N TA K
Sbjct: 70 TTVTHNPATTTSHGNATISHATVSPTTNGTATSPRSSTVGPHPGPPPPSPSPRS--KGAL 127
Query: 568 GDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGK---------AWGISVVNPNKTKVQGGCE 720
G+YTW NGSQPCV LQAQIQIR+LYP QGG K AWGISV+NPNKTKVQGGC+
Sbjct: 128 GNYTWANGSQPCVQLQAQIQIRILYPIQGGRKVKLKWGLKRAWGISVLNPNKTKVQGGCD 187
Query: 721 GAHAHLLLSFPYGQLSFGFKQE--PLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRE 894
G H HL LSFPYGQL+FGFKQ+ STVYL+YMA+E+NVSFP A QWTF QNSSLRE
Sbjct: 188 GTHPHLSLSFPYGQLTFGFKQDLHQSPSTVYLDYMAVEYNVSFPQAAQWTFMAQNSSLRE 247
Query: 895 LQTPLGQSYSCRNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRP 1065
LQ PLGQS+ C NASI+LSPA HLDLLSL+LQAAQLP G FGP F C D+S + P
Sbjct: 248 LQAPLGQSFCCGNASIVLSPAVHLDLLSLRLQAAQLPDKGHFGPCFSCNRDQSLLLP 304
>ref|NP_032158.2| glutamine repeat protein 1 [Mus musculus].
Length = 174
Score = 52.4 bits (124), Expect = 9e-07
Identities = 25/87 (28%), Positives = 43/87 (49%)
Frame = +3
Query: 243 YRKHRDTYGHRKHRDTYGHRKHRDTYGHRKHSQP*NNQTQKHHSKNHHCRHPQPQVHNSY 422
+++H+ H++H+ H++H+ H++H Q + Q Q+H + H +H Q Q
Sbjct: 64 HQQHQQHQQHQQHQQHQQHQQHQQHQQHQQHQQ--HQQHQQHQQQQQHQQHQQHQQQQQQ 121
Query: 423 SQSCYRHQSHSSPNKQQHCHQPRILHR 503
Q +HQ H QQH HQ H+
Sbjct: 122 QQH-QQHQQHQQHQHQQHQHQQHQQHQ 147
Score = 48.9 bits (115), Expect = 1e-05
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 243 YRKHRDTYGHRKHRDTYGHRKHRDTYGHRKHSQP*NNQT-QKHHSKNHHCRHPQPQVHNS 419
+++H+ H++H+ H++H+ H++H Q +Q Q+H + +H Q Q H
Sbjct: 73 HQQHQQHQQHQQHQQHQQHQQHQQHQQHQQHQQQQQHQQHQQHQQQQQQQQHQQHQQHQQ 132
Query: 420 YSQSCYRHQSHSSPNKQQHCHQPRI 494
+ ++HQ H +QQ +I
Sbjct: 133 HQHQQHQHQQHQQHQQQQQNQMDKI 157
>ref|NP_034814.2| lysosome-associated membrane glycoprotein 1 [Mus musculus].
Length = 406
Score = 51.6 bits (122), Expect = 2e-06
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 1/163 (0%)
Frame = +1
Query: 574 YTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLLSFP 753
Y T + C+ +Q+ + Y + ++PN T G C L +
Sbjct: 213 YNVTGNNGTCLLASMALQLNITYLKKDNKTVTRAFNISPNDTS-SGSCGINLVTLKVENK 271
Query: 754 YGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSCRN 933
L F S +L + N++ P A+ TFS+ N SL+ LQ +G SY C
Sbjct: 272 NRALELQFGMNASSSLFFLQ--GVRLNMTLPDALVPTFSISNHSLKALQATVGNSYKCNT 329
Query: 934 AS-IILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNM 1059
I +S L++ S+++QA ++ + FG C D +NM
Sbjct: 330 EEHIFVSKMLSLNVFSVQVQAFKV-DSDRFGSVEECVQDGNNM 371
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,590,985
Number of extensions: 1334717
Number of successful extensions: 6039
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5803
Number of HSP's successfully gapped: 4
Length of query: 477
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 372
Effective length of database: 12,463,779
Effective search space: 4636525788
Effective search space used: 4636525788
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007735
(1431 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001242.2| macrosialin isoform A [Homo sapiens]. 332 7e-91
Alignment gi|NP_001035148.1| macrosialin isoform B [Homo sapiens]. 297 1e-80
Alignment gi|NP_005552.3| lysosome-associated membrane glycoprotein 1 pre... 57 3e-08
Alignment gi|NP_002285.1| lysosome-associated membrane glycoprotein 2 iso... 50 5e-06
>ref|NP_001242.2| macrosialin isoform A [Homo sapiens].
Length = 354
Score = 332 bits (850), Expect = 7e-91
Identities = 188/356 (52%), Positives = 211/356 (59%), Gaps = 9/356 (2%)
Frame = +1
Query: 118 MRLAVIFSGALLGLLAAQDTGNECPHKKSATLL------PSFTVXXXXXXXXXXXXXXXX 279
MRLAV+FSGALLGLLAAQ TGN+CPHKKSATLL P+ T
Sbjct: 1 MRLAVLFSGALLGLLAAQGTGNDCPHKKSATLLPSFTVTPTVTESTGTTSHRTTKSHKTT 60
Query: 280 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSHKSTTATHNPATATSH--- 450
S +TATH+PAT TSH
Sbjct: 61 THRTTTTGTTSHGPTTATHNPTTTSHGNVTVHPTSNSTATSQGPSTATHSPAT-TSHGNA 119
Query: 451 TVHPTSNSTAXXXXXXXXXXXXXXXXXXXXXXXXXKEVKGDYTWTNGSQPCVHLQAQIQI 630
TVHPTSNSTA KE GDYTWTNGSQPCVHLQAQIQI
Sbjct: 120 TVHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTS-KETIGDYTWTNGSQPCVHLQAQIQI 178
Query: 631 RVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLLSFPYGQLSFGFKQEPLKSTVYL 810
RV+Y TQGGG+AWGISV+NPNKTKVQG CEGAH HLLLSFPYG LSFGF Q+ + VYL
Sbjct: 179 RVMYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQKVVYL 238
Query: 811 NYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSCRNASIILSPAFHLDLLSLKLQ 990
+YMA+E+NVSFP A QWTFS QN+SLR+LQ PLGQS+SC N+SIILSPA HLDLLSL+LQ
Sbjct: 239 SYMAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLLSLRLQ 298
Query: 991 AAQLPPTGAFGPNFFCPSDKSNMRPXXXXXXXXXXXXXMFVTFPFXXXXXXXYQLL 1158
AAQLP TG FG +F CPSD+S + P + + F YQ L
Sbjct: 299 AAQLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQAL 354
>ref|NP_001035148.1| macrosialin isoform B [Homo sapiens].
Length = 327
Score = 297 bits (761), Expect = 1e-80
Identities = 156/256 (60%), Positives = 176/256 (68%), Gaps = 3/256 (1%)
Frame = +1
Query: 400 SHKSTTATHNPATATSH---TVHPTSNSTAXXXXXXXXXXXXXXXXXXXXXXXXXKEVKG 570
S +TATH+PAT TSH TVHPTSNSTA KE G
Sbjct: 74 SQGPSTATHSPAT-TSHGNATVHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTS-KETIG 131
Query: 571 DYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLLSF 750
DYTWTNGSQPCVHLQAQIQIRV+Y TQGGG+AWGISV+NPNKTKVQG CEGAH HLLLSF
Sbjct: 132 DYTWTNGSQPCVHLQAQIQIRVMYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSF 191
Query: 751 PYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQSYSCR 930
PYG LSFGF Q+ + VYL+YMA+E+NVSFP A QWTFS QN+SLR+LQ PLGQS+SC
Sbjct: 192 PYGHLSFGFMQDLQQKVVYLSYMAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCS 251
Query: 931 NASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPXXXXXXXXXXXXXMF 1110
N+SIILSPA HLDLLSL+LQAAQLP TG FG +F CPSD+S + P +
Sbjct: 252 NSSIILSPAVHLDLLSLRLQAAQLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVL 311
Query: 1111 VTFPFXXXXXXXYQLL 1158
+ F YQ L
Sbjct: 312 IAFCIIRRRPSAYQAL 327
>ref|NP_005552.3| lysosome-associated membrane glycoprotein 1 precursor [Homo sapiens].
Length = 417
Score = 57.4 bits (137), Expect = 3e-08
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 3/168 (1%)
Frame = +1
Query: 565 KGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAHLLL 744
K + + TNG+ C+ +Q+ + Y + + +NPNKT G C GAH L
Sbjct: 221 KYNVSGTNGT--CLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSC-GAHLVTLE 277
Query: 745 SFPYGQ--LSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQS 918
G L F F S +L I+ N P A F N SLR LQ +G S
Sbjct: 278 LHSEGTTVLLFQFGMNASSSRFFLQ--GIQLNTILPDARDPAFKAANGSLRALQATVGNS 335
Query: 919 YSCR-NASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNM 1059
Y C + ++ AF +++ + +QA ++ G FG C D+++M
Sbjct: 336 YKCNAEEHVRVTKAFSVNIFKVWVQAFKV-EGGQFGSVEECLLDENSM 382
>ref|NP_002285.1| lysosome-associated membrane glycoprotein 2 isoform A precursor [Homo
sapiens].
Length = 410
Score = 50.1 bits (118), Expect = 5e-06
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Frame = +1
Query: 556 KEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAH 735
K G Y+ NG+ C+ +Q+ + TQ K + +NPN T G C A
Sbjct: 217 KPEAGTYSVNNGNDTCLLATMGLQLNI---TQD--KVASVININPNTTHSTGSCRSHTAL 271
Query: 736 LLLS---FPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTP 906
L L+ Y F K E + YL E N+S FS+ N++L P
Sbjct: 272 LRLNSSTIKYLDFVFAVKNE---NRFYLK----EVNISMYLVNGSVFSIANNNLSYWDAP 324
Query: 907 LGQSYSC-RNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSN 1056
LG SY C + ++ +S AF ++ L++Q + G + C +D N
Sbjct: 325 LGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNV-TQGKYSTAQDCSADDDN 374
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,140,025
Number of extensions: 1582438
Number of successful extensions: 7146
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6913
Number of HSP's successfully gapped: 5
Length of query: 477
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 371
Effective length of database: 14,802,980
Effective search space: 5491905580
Effective search space used: 5491905580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007735
(1431 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 678 0.0
Sscrofa_Chr12 260 2e-66
gb|GL893964.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 192 4e-46
Sscrofa_Chr13 109 4e-21
>Sscrofa_Chr08
|| Length = 148491826
Score = 678 bits (342), Expect = 0.0
Identities = 342/342 (100%)
Strand = Plus / Plus
Query: 1028 atttcttttgtcccagtgacaaatccaacatgcggcctctcatcatcagcctgattttaa 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29674196 atttcttttgtcccagtgacaaatccaacatgcggcctctcatcatcagcctgattttaa 29674255
Query: 1088 ttggcatcataatctcgatgttcgttaccttccccttcatacggagacgccgacgcatct 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29674256 ttggcatcataatctcgatgttcgttaccttccccttcatacggagacgccgacgcatct 29674315
Query: 1148 accagctcctctgaacatctgccccaatgagggccccagagggtgccctcatttctctcc 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29674316 accagctcctctgaacatctgccccaatgagggccccagagggtgccctcatttctctcc 29674375
Query: 1208 actctactgactcagggacaaagttaccgtccttctctgtcttgatgaacaaaagcagag 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29674376 actctactgactcagggacaaagttaccgtccttctctgtcttgatgaacaaaagcagag 29674435
Query: 1268 atagtgcatttgagagggatgagggaagagatgtttattaaataggactgattccccctt 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29674436 atagtgcatttgagagggatgagggaagagatgtttattaaataggactgattccccctt 29674495
Query: 1328 ccccatctccagtgcgagaacagtaaaacctgctcacatctt 1369
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29674496 ccccatctccagtgcgagaacagtaaaacctgctcacatctt 29674537
Score = 622 bits (314), Expect = e-175
Identities = 314/314 (100%)
Strand = Plus / Plus
Query: 165 agcccaggacacagggaacgaatgtcctcataaaaaatcagccactctgctaccatcctt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29672616 agcccaggacacagggaacgaatgtcctcataaaaaatcagccactctgctaccatcctt 29672675
Query: 225 cactgtgacacctacggctacagaaagcacagggacacctacggccacagaaagcacagg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29672676 cactgtgacacctacggctacagaaagcacagggacacctacggccacagaaagcacagg 29672735
Query: 285 gacacctacggccacagaaagcacagggacacctacggccacagaaagcacagccagccc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29672736 gacacctacggccacagaaagcacagggacacctacggccacagaaagcacagccagccc 29672795
Query: 345 tgaaacaaccagacacagaagcaccactcaaagaaccaccactgcaggcacccccagcca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29672796 tgaaacaaccagacacagaagcaccactcaaagaaccaccactgcaggcacccccagcca 29672855
Query: 405 caagtccacaacagctactcacaatcctgctaccgccaccagtcacacagttcacccaac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29672856 caagtccacaacagctactcacaatcctgctaccgccaccagtcacacagttcacccaac 29672915
Query: 465 aagcaacagcactg 478
||||||||||||||
Sbjct: 29672916 aagcaacagcactg 29672929
Score = 339 bits (171), Expect = 3e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 857 agtggacattctcagttcagaattcatcccttcgagagctccaaacccctctgggccaga 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29673727 agtggacattctcagttcagaattcatcccttcgagagctccaaacccctctgggccaga 29673786
Query: 917 gctacagttgcagaaatgcaagcatcattctttcaccagctttccacctcgacctgctct 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29673787 gctacagttgcagaaatgcaagcatcattctttcaccagctttccacctcgacctgctct 29673846
Query: 977 ccctgaagctacaagctgctcagctgccccccacaggggcctttggaccaa 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29673847 ccctgaagctacaagctgctcagctgccccccacaggggcctttggaccaa 29673897
Score = 321 bits (162), Expect = 6e-85
Identities = 165/166 (99%)
Strand = Plus / Plus
Query: 1 aagtcaaagatttatttcctctttttccaaacaaaggctgagggaaaagggttgattgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29672368 aagtcaaagatttatttcctctttttccaaacaaaggctgagggaaaagggttgattgag 29672427
Query: 61 caggcagctggtagggacacagaacctagatggactctgggtggaggctgttcagtcatg 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29672428 caggtagctggtagggacacagaacctagatggactctgggtggaggctgttcagtcatg 29672487
Query: 121 aggttggctgtgatcttctctggggccctgctgggacttctggcag 166
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29672488 aggttggctgtgatcttctctggggccctgctgggacttctggcag 29672533
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 538 agtcctagcccatgctccaaggaggtgaaaggagactacacttggacgaatggctcccag 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29672989 agtcctagcccatgctccaaggaggtgaaaggagactacacttggacgaatggctcccag 29673048
Query: 598 ccctgcgtccacctccaagcccagattcagattcgagttctatacccaacccagggtgga 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29673049 ccctgcgtccacctccaagcccagattcagattcgagttctatacccaacccagggtgga 29673108
Query: 658 ggaaagg 664
|||||||
Sbjct: 29673109 ggaaagg 29673115
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 662 aggcctggggcatctctgtagtgaaccccaacaaaaccaaggtccagggaggctgtgaag 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29673289 aggcctggggcatctctgtagtgaaccccaacaaaaccaaggtccagggaggctgtgaag 29673348
Query: 722 gtgcccatgcccacttgctcctctcattcccctatggacagctcagctttggattcaagc 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29673349 gtgcccatgcccacttgctcctctcattcccctatggacagctcagctttggattcaagc 29673408
Query: 782 agg 784
|||
Sbjct: 29673409 agg 29673411
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 781 caggagccactgaagagcactgtctacctgaactatatggctattgagcacaacgtgtcc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29673539 caggagccactgaagagcactgtctacctgaactatatggctattgagcacaacgtgtcc 29673598
Query: 841 ttccccggggcagtgc 856
||||||||||||||||
Sbjct: 29673599 ttccccggggcagtgc 29673614
>Sscrofa_Chr12
|| Length = 63588571
Score = 260 bits (131), Expect = 2e-66
Identities = 161/171 (94%)
Strand = Plus / Minus
Query: 857 agtggacattctcagttcagaattcatcccttcgagagctccaaacccctctgggccaga 916
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |
Sbjct: 55298024 agtggacattctcagttcagaattcatcccttcgagatctccaaacgcctgtgggccgaa 55297965
Query: 917 gctacagttgcagaaatgcaagcatcattctttcaccagctttccacctcgacctgctct 976
||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 55297964 gctacagctgcagaaacgcaagcatcattctttcaacagctttccacctcgacctgctct 55297905
Query: 977 ccctgaagctacaagctgctcagctgccccccacaggggcctttggaccaa 1027
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 55297904 ccctgaagctacaagctgctcagctgccccccacagggaactttggaccaa 55297854
Score = 172 bits (87), Expect = 3e-40
Identities = 114/123 (92%)
Strand = Plus / Minus
Query: 538 agtcctagcccatgctccaaggaggtgaaaggagactacacttggacgaatggctcccag 597
||||||||||| ||||| |||||| | ||||||||||||||||||||| |||||||||
Sbjct: 55299001 agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 55298942
Query: 598 ccctgcgtccacctccaagcccagattcagattcgagttctatacccaacccagggtgga 657
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 55298941 ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 55298882
Query: 658 gga 660
|||
Sbjct: 55298881 gga 55298879
Score = 165 bits (83), Expect = 8e-38
Identities = 113/123 (91%)
Strand = Plus / Minus
Query: 662 aggcctggggcatctctgtagtgaaccccaacaaaaccaaggtccagggaggctgtgaag 721
|||||||||||||||||||| ||||||||||||||||||||| || ||| |||||||| |
Sbjct: 55298717 aggcctggggcatctctgtactgaaccccaacaaaaccaaggccctggggggctgtgagg 55298658
Query: 722 gtgcccatgcccacttgctcctctcattcccctatggacagctcagctttggattcaagc 781
|||||||| ||||| ||| ||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 55298657 gtgcccatccccacgtgcgcctctcattcccctacggacagctcacctttggattcaagc 55298598
Query: 782 agg 784
|||
Sbjct: 55298597 agg 55298595
Score = 115 bits (58), Expect = 7e-23
Identities = 64/66 (96%)
Strand = Plus / Minus
Query: 189 tcctcataaaaaatcagccactctgctaccatccttcactgtgacacctacggctacaga 248
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 55299263 tcctcataaaaaatcagccactctgctgccatccttcacggtgacacctacggctacaga 55299204
Query: 249 aagcac 254
||||||
Sbjct: 55299203 aagcac 55299198
Score = 93.7 bits (47), Expect = 3e-16
Identities = 87/99 (87%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 1177 agggccccagagggtgccctcatttctctccactctactgactcagggacaaagttaccg 1236
||||| |||||||||||||| ||||||| |||||| |||||||| ||||||||| | |
Sbjct: 55297165 agggcaccagagggtgcccttatttctccccactcaactgactctaagacaaagtttc-g 55297107
Query: 1237 tccttctctgtcttgatgaacaaaagcagagatagtgca 1275
|| ||||||||||||||||||||||| ||||||| ||||
Sbjct: 55297106 tctttctctgtcttgatgaacaaaagtagagataatgca 55297068
Score = 93.7 bits (47), Expect = 3e-16
Identities = 86/99 (86%)
Strand = Plus / Minus
Query: 352 accagacacagaagcaccactcaaagaaccaccactgcaggcacccccagccacaagtcc 411
||||| ||||||| |||||||| |||||||||||| |||||||| ||||||| | ||
Sbjct: 55299196 accagccacagaaccaccactccaagaaccaccaccacaggcaccaccagccatgggccc 55299137
Query: 412 acaacagctactcacaatcctgctaccgccaccagtcac 450
||||||| |||||||||||||||||| |||||||||||
Sbjct: 55299136 acaacagtcactcacaatcctgctaccaccaccagtcac 55299098
Score = 91.7 bits (46), Expect = 1e-15
Identities = 106/126 (84%)
Strand = Plus / Minus
Query: 33 aaaggctgagggaaaagggttgattgagcaggcagctggtagggacacagaacctagatg 92
||||||||||||| ||| |||| |||||||||||||| | ||||||||| ||| ||
Sbjct: 55299504 aaaggctgagggattaggattgagagagcaggcagctgggacccacacagaacttagctg 55299445
Query: 93 gactctgggtggaggctgttcagtcatgaggttggctgtgatcttctctggggccctgct 152
|| |||| ||| ||||||||| | ||||| |||||||||| |||||| |||||||||||
Sbjct: 55299444 gattctgagtgcaggctgttctgacatgacgttggctgtgctcttcttaggggccctgct 55299385
Query: 153 gggact 158
||||||
Sbjct: 55299384 gggact 55299379
Score = 81.8 bits (41), Expect = 1e-12
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 785 agccactgaagagcactgtctacctgaactatatggctattgagcacaacgtgtccttcc 844
|||||| | |||||||||||||||||||||| |||||| | ||| |||||||||||||||
Sbjct: 55298470 agccacaggagagcactgtctacctgaactacatggctgtggagtacaacgtgtccttcc 55298411
Query: 845 ccggggcag 853
|| ||||||
Sbjct: 55298410 cccgggcag 55298402
>gb|GL893964.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2677
Length = 22458
Score = 192 bits (97), Expect = 4e-46
Identities = 124/133 (93%)
Strand = Plus / Plus
Query: 895 ctccaaacccctctgggccagagctacagttgcagaaatgcaagcatcattctttcacca 954
|||||||| ||| |||||| |||||||| |||||||| |||||||||||||||||| ||
Sbjct: 14576 ctccaaacgcctgtgggccgaagctacagctgcagaaacgcaagcatcattctttcaaca 14635
Query: 955 gctttccacctcgacctgctctccctgaagctacaagctgctcagctgccccccacaggg 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14636 gctttccacctcgacctgctctccctgaagctacaagctgctcagctgccccccacaggg 14695
Query: 1015 gcctttggaccaa 1027
|||||||||||
Sbjct: 14696 aactttggaccaa 14708
Score = 172 bits (87), Expect = 3e-40
Identities = 114/123 (92%)
Strand = Plus / Plus
Query: 538 agtcctagcccatgctccaaggaggtgaaaggagactacacttggacgaatggctcccag 597
||||||||||| ||||| |||||| | ||||||||||||||||||||| |||||||||
Sbjct: 13691 agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 13750
Query: 598 ccctgcgtccacctccaagcccagattcagattcgagttctatacccaacccagggtgga 657
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 13751 ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 13810
Query: 658 gga 660
|||
Sbjct: 13811 gga 13813
Score = 165 bits (83), Expect = 8e-38
Identities = 113/123 (91%)
Strand = Plus / Plus
Query: 662 aggcctggggcatctctgtagtgaaccccaacaaaaccaaggtccagggaggctgtgaag 721
|||||||||||||||||||| ||||||||||||||||||||| || ||| |||||||| |
Sbjct: 13974 aggcctggggcatctctgtactgaaccccaacaaaaccaaggccctggggggctgtgagg 14033
Query: 722 gtgcccatgcccacttgctcctctcattcccctatggacagctcagctttggattcaagc 781
|||||||| ||||| ||| ||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 14034 gtgcccatccccacgtgcgcctctcattcccctacggacagctcacctttggattcaagc 14093
Query: 782 agg 784
|||
Sbjct: 14094 agg 14096
Score = 93.7 bits (47), Expect = 3e-16
Identities = 86/99 (86%)
Strand = Plus / Plus
Query: 352 accagacacagaagcaccactcaaagaaccaccactgcaggcacccccagccacaagtcc 411
||||| ||||||| |||||||| |||||||||||| |||||||| ||||||| | ||
Sbjct: 13490 accagccacagaaccaccactccaagaaccaccaccacaggcaccaccagccatgggccc 13549
Query: 412 acaacagctactcacaatcctgctaccgccaccagtcac 450
||||||| |||||||||||||||||| |||||||||||
Sbjct: 13550 acaacagtcactcacaatcctgctaccaccaccagtcac 13588
Score = 91.7 bits (46), Expect = 1e-15
Identities = 106/126 (84%)
Strand = Plus / Plus
Query: 33 aaaggctgagggaaaagggttgattgagcaggcagctggtagggacacagaacctagatg 92
||||||||||||| ||| |||| |||||||||||||| | ||||||||| ||| ||
Sbjct: 13214 aaaggctgagggattaggattgagagagcaggcagctgggacccacacagaacttagctg 13273
Query: 93 gactctgggtggaggctgttcagtcatgaggttggctgtgatcttctctggggccctgct 152
|| |||| ||| ||||||||| | ||||| |||||||||| |||||| |||||||||||
Sbjct: 13274 gattctgagtgcaggctgttctgacatgacgttggctgtgctcttcttaggggccctgct 13333
Query: 153 gggact 158
||||||
Sbjct: 13334 gggact 13339
Score = 85.7 bits (43), Expect = 6e-14
Identities = 86/99 (86%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 1177 agggccccagagggtgccctcatttctctccactctactgactcagggacaaagttaccg 1236
||||| |||||||||||||| ||||||| |||||| |||||||| ||||||||| |
Sbjct: 15397 agggcaccagagggtgcccttatttctccccactcaactgactctaagacaaagtt-tct 15455
Query: 1237 tccttctctgtcttgatgaacaaaagcagagatagtgca 1275
|| ||||||||||||||||||||||| ||||||| ||||
Sbjct: 15456 tctttctctgtcttgatgaacaaaagtagagataatgca 15494
Score = 81.8 bits (41), Expect = 1e-12
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 785 agccactgaagagcactgtctacctgaactatatggctattgagcacaacgtgtccttcc 844
|||||| | |||||||||||||||||||||| |||||| | ||| |||||||||||||||
Sbjct: 14221 agccacaggagagcactgtctacctgaactacatggctgtggagtacaacgtgtccttcc 14280
Query: 845 ccggggcag 853
|| ||||||
Sbjct: 14281 cccgggcag 14289
Score = 67.9 bits (34), Expect = 1e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 217 ccatccttcactgtgacacctacggctacagaaagcac 254
||||||||||| ||||||||||||||||||||||||||
Sbjct: 13451 ccatccttcacggtgacacctacggctacagaaagcac 13488
>Sscrofa_Chr13
|| Length = 218635234
Score = 109 bits (55), Expect = 4e-21
Identities = 98/111 (88%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 1 aagtcaaagatttatttcctctttttccaaacaaaggctgagggaaaagggttgattgag 60
|||||||||| | |||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct: 112168436 aagtcaaagactaatttcctctttttccaaagaaaggcacagggagcagggttgattgag 112168495
Query: 61 caggcagctggtagggacacagaacctagatggactctgggtggaggctgt 111
|||| |||||||| |||||||||||||| | |||||||||| ||||||||
Sbjct: 112168496 caggtagctggtactgacacagaacctagct-gactctgggtagaggctgt 112168545
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,007,656
Number of extensions: 313
Number of successful extensions: 313
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 24
Length of query: 1431
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1410
Effective length of database: 2,808,413,156
Effective search space: 3959862549960
Effective search space used: 3959862549960
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)