Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007742
(1661 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030500.1| probable ergosterol biosynthetic protein 28 ... 228 9e-60
>ref|NP_001030500.1| probable ergosterol biosynthetic protein 28 [Bos taurus].
Length = 140
Score = 228 bits (582), Expect = 9e-60
Identities = 113/140 (80%), Positives = 121/140 (86%)
Frame = +3
Query: 783 MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPDLVNGLQARTFGIWTLLS 962
MSRFLN+LRSWLVMVSI+A GN+LQSFRDHTFLYEKLYTGKPDLVNGLQART+GIWTLLS
Sbjct: 1 MSRFLNMLRSWLVMVSIVAAGNSLQSFRDHTFLYEKLYTGKPDLVNGLQARTYGIWTLLS 60
Query: 963 SMIRCLCAIDIHNKTLYLITLCTFFLALGHFLTELFVFGTAAPTXXXXXXXXXXXXXXXG 1142
S++RCLCAIDIHNKTLY ITL TFFLALGHFL ELFVFGTAAPT G
Sbjct: 61 SVVRCLCAIDIHNKTLYYITLWTFFLALGHFLCELFVFGTAAPTIGVMAPLMVASISILG 120
Query: 1143 MLVGLQYLEAEPGSRQKKRN 1202
MLVGL++LEAEPGSRQKKRN
Sbjct: 121 MLVGLRHLEAEPGSRQKKRN 140
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,924,241
Number of extensions: 1734675
Number of successful extensions: 5945
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5930
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 446
Effective length of database: 14,140,958
Effective search space: 6306867268
Effective search space used: 6306867268
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007742
(1661 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854777.1| PREDICTED: similar to Probable ergosterol biosy... 228 2e-70
>ref|XP_854777.1| PREDICTED: similar to Probable ergosterol biosynthetic protein 28
[Canis familiaris].
Length = 393
Score = 228 bits (581), Expect(2) = 2e-70
Identities = 116/145 (80%), Positives = 120/145 (82%)
Frame = +3
Query: 768 GLKRAMSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPDLVNGLQARTFGI 947
G + MSRFLNVLRSWLVMVSIIA+GNTLQSFRDHTFLYEKLYTGKPDLVNGLQARTFGI
Sbjct: 249 GWREVMSRFLNVLRSWLVMVSIIAIGNTLQSFRDHTFLYEKLYTGKPDLVNGLQARTFGI 308
Query: 948 WTLLSSMIRCLCAIDIHNKTLYLITLCTFFLALGHFLTELFVFGTAAPTXXXXXXXXXXX 1127
WTLLSS+IRCLCAIDIHNKTLY ITL TF LALGHFL+ELFVFGTAAPT
Sbjct: 309 WTLLSSVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVFGTAAPTIGVLAPLMVAS 368
Query: 1128 XXXXGMLVGLQYLEAEPGSRQKKRN 1202
GMLVGL YLE EP S QKKRN
Sbjct: 369 FSILGMLVGLWYLEVEPASGQKKRN 393
Score = 57.8 bits (138), Expect(2) = 2e-70
Identities = 37/84 (44%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = +2
Query: 443 PGLFRHAQ*DGSLLQQHNRG*GLGSDNR*LAVKRITPHLLLEQNQNSQSEQVLMETTQSW 622
PG F HAQ DG + +AV R N++ QSE+ L ETTQSW
Sbjct: 160 PGFFGHAQPDGPAAR--------------VAVPR--------HNRSRQSERGLTETTQSW 197
Query: 623 SRAEGGGGDKWLRW-----NRCWS 679
SRA GGG DKWLRW +R WS
Sbjct: 198 SRAVGGGEDKWLRWAPRSLDRFWS 221
Score = 84.3 bits (207), Expect = 3e-16
Identities = 64/143 (44%), Positives = 71/143 (49%), Gaps = 13/143 (9%)
Frame = +3
Query: 3 QPSAPGSQQLLPDSAREVQPTCARPDPGV--HLPPAGE---CAGADIYLFHLPMARGGQA 167
QP APG+QQLLPD REVQ RP P LP E A A +L + G A
Sbjct: 69 QPGAPGNQQLLPDPDREVQ----RPAPAQTRELPSLAERSAPAQAFTWLIFPWLGAGRPA 124
Query: 168 GTALCACHPPSSPAGLKAAADSSFPGYYNNQPATA--------RSEPLRRRPLPGADSPR 323
GTALCA PP SPAGL AAAD FP YYNNQP A P R +P + R
Sbjct: 125 GTALCAYLPPPSPAGLPAAADRCFPRYYNNQPPPAPGFFGHAQPDGPAARVAVPRHNRSR 184
Query: 324 LRARAIVVTTVQRKRRALIAAED 392
R + TT Q RA+ ED
Sbjct: 185 QSERGLTETT-QSWSRAVGGGED 206
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,852,877
Number of extensions: 1507964
Number of successful extensions: 6007
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5979
Number of HSP's successfully gapped: 4
Length of query: 553
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 445
Effective length of database: 15,274,216
Effective search space: 6797026120
Effective search space used: 6797026120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007742
(1661 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161109.1| hypothetical LOC100312958 [Sus scrofa]. 249 4e-66
>ref|NP_001161109.1| hypothetical LOC100312958 [Sus scrofa].
Length = 140
Score = 249 bits (635), Expect = 4e-66
Identities = 125/140 (89%), Positives = 125/140 (89%)
Frame = +3
Query: 783 MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPDLVNGLQARTFGIWTLLS 962
MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPDLVNGLQARTFGIWTLLS
Sbjct: 1 MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPDLVNGLQARTFGIWTLLS 60
Query: 963 SMIRCLCAIDIHNKTLYLITLCTFFLALGHFLTELFVFGTAAPTXXXXXXXXXXXXXXXG 1142
SMIRCLCAIDIHNKTLYLITLCTFFLALGHFLTELFVFGTAAPT G
Sbjct: 61 SMIRCLCAIDIHNKTLYLITLCTFFLALGHFLTELFVFGTAAPTISVLAPLVVASSSILG 120
Query: 1143 MLVGLQYLEAEPGSRQKKRN 1202
MLVGLQYLEAEPGSRQKKRN
Sbjct: 121 MLVGLQYLEAEPGSRQKKRN 140
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,949,601
Number of extensions: 1542759
Number of successful extensions: 3900
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3892
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 449
Effective length of database: 8,754,644
Effective search space: 3930835156
Effective search space used: 3930835156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007742
(1661 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067421.1| probable ergosterol biosynthetic protein 28 [Mu... 229 4e-60
>ref|NP_067421.1| probable ergosterol biosynthetic protein 28 [Mus musculus].
Length = 140
Score = 229 bits (585), Expect = 4e-60
Identities = 117/140 (83%), Positives = 121/140 (86%)
Frame = +3
Query: 783 MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPDLVNGLQARTFGIWTLLS 962
MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKP+LVNGLQARTFGIWTLLS
Sbjct: 1 MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLS 60
Query: 963 SMIRCLCAIDIHNKTLYLITLCTFFLALGHFLTELFVFGTAAPTXXXXXXXXXXXXXXXG 1142
S+IRCLCAIDIHNKTLY ITL TF LALGHFL+ELFVFGTAAPT G
Sbjct: 61 SVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVFGTAAPTVGVLAPLMVASFSILG 120
Query: 1143 MLVGLQYLEAEPGSRQKKRN 1202
MLVGL+YLEAEP SRQKKRN
Sbjct: 121 MLVGLRYLEAEPVSRQKKRN 140
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,903,268
Number of extensions: 1203990
Number of successful extensions: 4680
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4663
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 447
Effective length of database: 12,433,743
Effective search space: 5557883121
Effective search space used: 5557883121
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007742
(1661 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009107.1| probable ergosterol biosynthetic protein 28 [Ho... 227 3e-59
>ref|NP_009107.1| probable ergosterol biosynthetic protein 28 [Homo sapiens].
Length = 140
Score = 227 bits (578), Expect = 3e-59
Identities = 115/140 (82%), Positives = 120/140 (85%)
Frame = +3
Query: 783 MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPDLVNGLQARTFGIWTLLS 962
MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKP+LVNGLQARTFGIWTLLS
Sbjct: 1 MSRFLNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLS 60
Query: 963 SMIRCLCAIDIHNKTLYLITLCTFFLALGHFLTELFVFGTAAPTXXXXXXXXXXXXXXXG 1142
S+IRCLCAIDIHNKTLY ITL TF LALGHFL+ELFV+GTAAPT G
Sbjct: 61 SVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAAPTIGVLAPLMVASFSILG 120
Query: 1143 MLVGLQYLEAEPGSRQKKRN 1202
MLVGL+YLE EP SRQKKRN
Sbjct: 121 MLVGLRYLEVEPVSRQKKRN 140
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,479,388
Number of extensions: 1447098
Number of successful extensions: 5513
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5498
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 445
Effective length of database: 14,737,052
Effective search space: 6557988140
Effective search space used: 6557988140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007742
(1661 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1376 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1376 bits (694), Expect = 0.0
Identities = 697/698 (99%)
Strand = Plus / Minus
Query: 1 ttcagcccagcgcgcccggaagccaacagctgctcccggactctgcgagggaagtgcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104712949 ttcagcccagcgcgcccggaagccaacagctgctcccggactctgcgagggaagtgcagc 104712890
Query: 61 cgacctgcgcccgcccagacccgggagtgcacctccctccggcaggggagtgcgctggcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104712889 cgacctgcgcccgcccagacccgggagtgcacctccctccggcaggggagtgcgctggcg 104712830
Query: 121 cagacatttacctgtttcatcttcccatggctcggggcgggcaggctgggacagcgctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104712829 cagacatttacctgtttcatcttcccatggctcggggcgggcaggctgggacagcgctct 104712770
Query: 181 gcgcctgccaccctccttcttccccagccgggctcaaggcagccgccgacagcagcttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104712769 gcgcctgccaccctccttcttccccagccgggctcaaggcagccgccgacagcagcttcc 104712710
Query: 241 ccggttactacaacaaccaaccagcaaccgcccgctcggagccactgcgcaggcgcccgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104712709 ccggttactacaacaaccaaccagcaaccgcccgctcggagccactgcgcaggcgcccgc 104712650
Query: 301 tacccggcgcggacagccctcggcttcgggcgcgggcaattgtcgtcactactgtacagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104712649 tacccggcgcggacagccctcggcttcgggcgcgggcaattgtcgtcactactgtacagc 104712590
Query: 361 gcaagcgcagagccttgatcgccgcagaggacttcttttttccgctctttttccctccgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104712589 gcaagcgcagagccttgatcgccgcagaggacttcttttttccgctctttttccctccgc 104712530
Query: 421 ccctaaaggattgactcagaacccggggctctttcgccacgctcaataggatggttcact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104712529 ccctaaaggattgactcagaacccggggctctttcgccacgctcaataggatggttcact 104712470
Query: 481 gcttcagcagcataaccgggggtgaggcttgggcagcgacaaccgctgattggcagtaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104712469 gcttcagcagcataaccgggggtgaggcttgggcagcgacaaccgctgattggcagtaaa 104712410
Query: 541 gaggatcacgccccatctcctgctggagcagaaccagaacagccaatcagagcaagtact 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 104712409 gaggatcacgccccatctcctgctagagcagaaccagaacagccaatcagagcaagtact 104712350
Query: 601 gatggaaacgacccaatcctggagccgggctgaaggtgggggcggggacaagtggctccg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104712349 gatggaaacgacccaatcctggagccgggctgaaggtgggggcggggacaagtggctccg 104712290
Query: 661 gtggaatcggtgttggagctgccctggggaatatcctt 698
||||||||||||||||||||||||||||||||||||||
Sbjct: 104712289 gtggaatcggtgttggagctgccctggggaatatcctt 104712252
Score = 327 bits (165), Expect = 1e-86
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 751 aggcacaaagccctctagggttgaagagagccatgagccggttcctgaacgtgttacgaa 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104710018 aggcacaaagccctctagggttgaagagagccatgagccggttcctgaacgtgttacgaa 104709959
Query: 811 gctggctggtcatggtatccatcatagccatggggaacacgctgcagagcttccgagacc 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104709958 gctggctggtcatggtatccatcatagccatggggaacacgctgcagagcttccgagacc 104709899
Query: 871 acacctttctctatgaaaagctctacaccggcaagccagacctcg 915
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104709898 acacctttctctatgaaaagctctacaccggcaagccagacctcg 104709854
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,927,874
Number of extensions: 241
Number of successful extensions: 241
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 2
Length of query: 1661
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1639
Effective length of database: 2,808,408,574
Effective search space: 4602981652786
Effective search space used: 4602981652786
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)