Animal-Genome cDNA 20110601C-007745

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007745
         (1086 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002686310.1| PREDICTED: similar to Interferon-induced gua...   483   e-136
Alignment   gi|XP_590008.3| PREDICTED: similar to Interferon-induced guanyl...   483   e-136
Alignment   gi|XP_002686314.1| PREDICTED: interferon-induced guanylate-bind...   480   e-136
Alignment   gi|XP_870380.1| PREDICTED: interferon-induced guanylate-binding...   480   e-136
Alignment   gi|XP_002686293.1| PREDICTED: hypothetical protein [Bos taurus].     454   e-128
Alignment   gi|XP_001250190.3| PREDICTED: hypothetical protein [Bos taurus].     453   e-127
Alignment   gi|XP_591946.3| PREDICTED: hypothetical protein [Bos taurus].        451   e-127
Alignment   gi|XP_001254126.1| PREDICTED: hypothetical protein [Bos taurus].     437   e-123
Alignment   gi|XP_002686311.1| PREDICTED: hypothetical protein [Bos taurus].     435   e-122
Alignment   gi|NP_001069214.1| guanylate-binding protein 5 [Bos taurus].         388   e-108

>ref|XP_002686310.1| PREDICTED: similar to Interferon-induced guanylate-binding protein 1
            (GTP-binding protein 1) (Guanine nucleotide-binding
            protein 1) (HuGBP-1) [Bos taurus].
          Length = 591

 Score =  483 bits (1242), Expect = e-136
 Identities = 239/289 (82%), Positives = 254/289 (87%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS++HMP P+CLI+NINGRL VNP+ALK+LSAI+QP+VVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MASEIHMPGPECLIKNINGRLLVNPEALKILSAIRQPVVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFSLGSTVQSHTKGIWMWCVPHPKK   TLVLLDTEGLGDVEKGDNQNDSWIFALAI
Sbjct: 61   KNKGFSLGSTVQSHTKGIWMWCVPHPKKPNRTLVLLDTEGLGDVEKGDNQNDSWIFALAI 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYNSMGTINQQAMDQLHYVTELT+RIRAKS PD +G+EDSADFVSFFPDFVWTL
Sbjct: 121  LLSSTFVYNSMGTINQQAMDQLHYVTELTDRIRAKSSPDVDGVEDSADFVSFFPDFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSLDLE DG+SITADEYLENSLKLKKGTS KDK FN+PRLCIRKFFPKKKCFIFDRPT
Sbjct: 181  RDFSLDLEADGQSITADEYLENSLKLKKGTSPKDKTFNMPRLCIRKFFPKKKCFIFDRPT 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             RKK             SEFVQQA  FCSYIF +SKTK      +  GP
Sbjct: 241  HRKKLGQLEELCDDELDSEFVQQAVVFCSYIFSDSKTKTLSGGIKVDGP 289


>ref|XP_590008.3| PREDICTED: similar to Interferon-induced guanylate-binding protein 1
            (GTP-binding protein 1) (Guanine nucleotide-binding
            protein 1) (HuGBP-1) isoform 3 [Bos taurus].
          Length = 591

 Score =  483 bits (1242), Expect = e-136
 Identities = 239/289 (82%), Positives = 254/289 (87%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS++HMP P+CLI+NINGRL VNP+ALK+LSAI+QP+VVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MASEIHMPGPECLIKNINGRLLVNPEALKILSAIRQPVVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFSLGSTVQSHTKGIWMWCVPHPKK   TLVLLDTEGLGDVEKGDNQNDSWIFALAI
Sbjct: 61   KNKGFSLGSTVQSHTKGIWMWCVPHPKKPNRTLVLLDTEGLGDVEKGDNQNDSWIFALAI 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYNSMGTINQQAMDQLHYVTELT+RIRAKS PD +G+EDSADFVSFFPDFVWTL
Sbjct: 121  LLSSTFVYNSMGTINQQAMDQLHYVTELTDRIRAKSSPDVDGVEDSADFVSFFPDFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSLDLE DG+SITADEYLENSLKLKKGTS KDK FN+PRLCIRKFFPKKKCFIFDRPT
Sbjct: 181  RDFSLDLEADGQSITADEYLENSLKLKKGTSPKDKTFNMPRLCIRKFFPKKKCFIFDRPT 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             RKK             SEFVQQA  FCSYIF +SKTK      +  GP
Sbjct: 241  HRKKLGQLEELCDDELDSEFVQQAVVFCSYIFSDSKTKTLSGGIKVDGP 289


>ref|XP_002686314.1| PREDICTED: interferon-induced guanylate-binding protein 2-like [Bos
            taurus].
          Length = 591

 Score =  480 bits (1236), Expect = e-136
 Identities = 238/289 (82%), Positives = 252/289 (87%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS++HMP P+CLI+NINGRL VNP+ALK+LSAI+QP+VVVAIVG YRTGKSYLMNKLAG
Sbjct: 1    MASEIHMPGPECLIKNINGRLLVNPEALKILSAIRQPVVVVAIVGPYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGF LGSTVQSHTKGIWMWCVPHPKK   TLVLLDTEGLGDVEKGDNQNDSWIFALAI
Sbjct: 61   KNKGFPLGSTVQSHTKGIWMWCVPHPKKPNRTLVLLDTEGLGDVEKGDNQNDSWIFALAI 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYNSMGTINQQAMDQLHYVTELT+RIRAKS PD +G+EDSADFVSFFPDF+WTL
Sbjct: 121  LLSSTFVYNSMGTINQQAMDQLHYVTELTDRIRAKSSPDVDGVEDSADFVSFFPDFIWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSLDLE DG+SITADEYLENSLKLKKGTS KDK FNLPRLCIRKFFPKKKCFIFDRPT
Sbjct: 181  RDFSLDLEADGQSITADEYLENSLKLKKGTSPKDKTFNLPRLCIRKFFPKKKCFIFDRPT 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             RKK             SEFVQQA  FCSYIF NSKTK      +  GP
Sbjct: 241  HRKKLGQLEELCDDELDSEFVQQAVVFCSYIFSNSKTKTLSGGIKVDGP 289


>ref|XP_870380.1| PREDICTED: interferon-induced guanylate-binding protein 2-like
            isoform 2 [Bos taurus].
          Length = 591

 Score =  480 bits (1236), Expect = e-136
 Identities = 238/289 (82%), Positives = 252/289 (87%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS++HMP P+CLI+NINGRL VNP+ALK+LSAI+QP+VVVAIVG YRTGKSYLMNKLAG
Sbjct: 1    MASEIHMPGPECLIKNINGRLLVNPEALKILSAIRQPVVVVAIVGPYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGF LGSTVQSHTKGIWMWCVPHPKK   TLVLLDTEGLGDVEKGDNQNDSWIFALAI
Sbjct: 61   KNKGFPLGSTVQSHTKGIWMWCVPHPKKPNRTLVLLDTEGLGDVEKGDNQNDSWIFALAI 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYNSMGTINQQAMDQLHYVTELT+RIRAKS PD +G+EDSADFVSFFPDF+WTL
Sbjct: 121  LLSSTFVYNSMGTINQQAMDQLHYVTELTDRIRAKSSPDVDGVEDSADFVSFFPDFIWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSLDLE DG+SITADEYLENSLKLKKGTS KDK FNLPRLCIRKFFPKKKCFIFDRPT
Sbjct: 181  RDFSLDLEADGQSITADEYLENSLKLKKGTSPKDKTFNLPRLCIRKFFPKKKCFIFDRPT 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             RKK             SEFVQQA  FCSYIF NSKTK      +  GP
Sbjct: 241  HRKKLGQLEELCDDELDSEFVQQAVVFCSYIFSNSKTKTLSGGIKVDGP 289


>ref|XP_002686293.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 637

 Score =  454 bits (1167), Expect = e-128
 Identities = 223/290 (76%), Positives = 246/290 (84%), Gaps = 1/290 (0%)
 Frame = +1

Query: 172  DMASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLA 351
            DMAS++HMP P+CLIENINGRL VNP+ALK+LSAI+QP+VVVAIVGLYRTGKSYLMNKLA
Sbjct: 121  DMASEIHMPGPECLIENINGRLLVNPEALKILSAIRQPVVVVAIVGLYRTGKSYLMNKLA 180

Query: 352  GKNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALA 531
            GKNKGFSLGSTVQSHTKGIWMWCVPHPKK +HTLVLLDTEGLGDVEKGDNQNDSWIFALA
Sbjct: 181  GKNKGFSLGSTVQSHTKGIWMWCVPHPKKPDHTLVLLDTEGLGDVEKGDNQNDSWIFALA 240

Query: 532  ILLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDE-GIEDSADFVSFFPDFVWT 708
            +LLSSTFVYNS+GTINQQAMDQLHYVTELT RIRAKS PD+  ++DSA+FVSFFPDFVWT
Sbjct: 241  VLLSSTFVYNSIGTINQQAMDQLHYVTELTHRIRAKSSPDKHEVQDSANFVSFFPDFVWT 300

Query: 709  LRDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
            LRDFSL+LE DG++ITADEYLENSLKLK+G  +K KNFN PRLCIRKFFP+KKCFIFDRP
Sbjct: 301  LRDFSLELEADGQAITADEYLENSLKLKQGNDKKTKNFNEPRLCIRKFFPEKKCFIFDRP 360

Query: 889  TQRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
              RK               EF +Q A+FC YI  +SK K         GP
Sbjct: 361  APRKYLIHLEQLQEEDLNPEFREQVADFCFYILSHSKAKTLSGGITVNGP 410


>ref|XP_001250190.3| PREDICTED: hypothetical protein [Bos taurus].
          Length = 654

 Score =  453 bits (1166), Expect = e-127
 Identities = 223/290 (76%), Positives = 245/290 (84%), Gaps = 1/290 (0%)
 Frame = +1

Query: 172  DMASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLA 351
            DMAS++HMP P+CLIENINGRL VNP+ALK+LSAI+QP+VVVAIVGLYRTGKSYLMNKLA
Sbjct: 66   DMASEIHMPGPECLIENINGRLLVNPEALKILSAIRQPVVVVAIVGLYRTGKSYLMNKLA 125

Query: 352  GKNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALA 531
            GKNKGFSLGSTVQSHTKGIWMWCVPHPKK +HTLVLLDTEGLGDVEKGDNQNDSWIFALA
Sbjct: 126  GKNKGFSLGSTVQSHTKGIWMWCVPHPKKPDHTLVLLDTEGLGDVEKGDNQNDSWIFALA 185

Query: 532  ILLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDE-GIEDSADFVSFFPDFVWT 708
            +LLSSTFVYNS+GTINQQAMDQLHYVTELT RIRAKS PD+  ++DSA+FVSFFPDFVWT
Sbjct: 186  VLLSSTFVYNSIGTINQQAMDQLHYVTELTHRIRAKSSPDKHEVQDSANFVSFFPDFVWT 245

Query: 709  LRDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
            LRDFSL+LE DG+ ITADEYLENSLKLK+G  +K KNFN PRLCIRKFFP+KKCFIFDRP
Sbjct: 246  LRDFSLELEADGQPITADEYLENSLKLKQGNDKKTKNFNEPRLCIRKFFPEKKCFIFDRP 305

Query: 889  TQRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
              RK               EF +Q A+FC YI  +SK K         GP
Sbjct: 306  AHRKYLIHLEQLQEEDLNPEFREQVADFCFYILSHSKAKTLSGGITVNGP 355


>ref|XP_591946.3| PREDICTED: hypothetical protein [Bos taurus].
          Length = 582

 Score =  451 bits (1161), Expect = e-127
 Identities = 222/289 (76%), Positives = 245/289 (84%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS++HMP P+CLIENINGRL VNP+ALK+LSAI+QP+VVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MASEIHMPGPECLIENINGRLLVNPEALKILSAIRQPVVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFSLGSTVQSHTKGIWMWCVPHPKK +HTLVLLDTEGLGDVEKGDNQNDSWIFALA+
Sbjct: 61   KNKGFSLGSTVQSHTKGIWMWCVPHPKKPDHTLVLLDTEGLGDVEKGDNQNDSWIFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDE-GIEDSADFVSFFPDFVWTL 711
            LLSSTFVYNS+GTINQQAMDQLHYVTELT RIRAKS PD+  ++DSA+FVSFFPDFVWTL
Sbjct: 121  LLSSTFVYNSIGTINQQAMDQLHYVTELTHRIRAKSSPDKHEVQDSANFVSFFPDFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSL+LE DG++ITADEYLENSLKLK+G  +K KNFN PRLCIRKFFP+KKCFIFDRP 
Sbjct: 181  RDFSLELEADGQAITADEYLENSLKLKQGNDKKTKNFNEPRLCIRKFFPEKKCFIFDRPA 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             RK               EF +Q A+FC YI  +SK K         GP
Sbjct: 241  PRKYLIHLEQLQEEDLNPEFREQVADFCFYILSHSKAKTLSGGITVNGP 289


>ref|XP_001254126.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 387

 Score =  437 bits (1125), Expect = e-123
 Identities = 217/290 (74%), Positives = 241/290 (83%), Gaps = 1/290 (0%)
 Frame = +1

Query: 172  DMASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLA 351
            DMAS++HMP P+CLI+NING+L VN +ALK+LSAIKQP+VVVAIVGLYRTGKSYLMNKLA
Sbjct: 81   DMASEIHMPGPECLIKNINGQLLVNREALKILSAIKQPVVVVAIVGLYRTGKSYLMNKLA 140

Query: 352  GKNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALA 531
            GKNKGFS+GSTVQSHTKGIWMWCVPHPKK +HTLVLLDTEGLGDVEKGDNQNDSWIFALA
Sbjct: 141  GKNKGFSVGSTVQSHTKGIWMWCVPHPKKPDHTLVLLDTEGLGDVEKGDNQNDSWIFALA 200

Query: 532  ILLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDE-GIEDSADFVSFFPDFVWT 708
            +LLSSTFVYNS+GTINQQAMDQLHYVTELT RIRAKS PD+  + DSA+FVSFFPDFVWT
Sbjct: 201  VLLSSTFVYNSIGTINQQAMDQLHYVTELTRRIRAKSSPDKHEVLDSANFVSFFPDFVWT 260

Query: 709  LRDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
            LRDFSL+L  DG+ ITADEYLE SLKLK+G  +K KNFN PRLCIRKFFP+KKCFIFDRP
Sbjct: 261  LRDFSLELVADGQPITADEYLEYSLKLKQGNDKKTKNFNEPRLCIRKFFPEKKCFIFDRP 320

Query: 889  TQRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
              RK               +F +Q A+FC YI  +SK K         GP
Sbjct: 321  AHRKYLIHLEQLQEEDLNPKFREQVADFCFYILSHSKAKTLSGGITVNGP 370


>ref|XP_002686311.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 582

 Score =  435 bits (1119), Expect = e-122
 Identities = 216/289 (74%), Positives = 240/289 (83%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS++HMP P+CLI+NING+L VN +ALK+LSAIKQP+VVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MASEIHMPGPECLIKNINGQLLVNREALKILSAIKQPVVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFS+GSTVQSHTKGIWMWCVPHPKK +HTLVLLDTEGLGDVEKGDNQNDSWIFALA+
Sbjct: 61   KNKGFSVGSTVQSHTKGIWMWCVPHPKKPDHTLVLLDTEGLGDVEKGDNQNDSWIFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDE-GIEDSADFVSFFPDFVWTL 711
            LLSSTFVYNS+GTINQQAMDQLHYVTELT RIRAKS PD+  + DSA+FVSFFPDFVWTL
Sbjct: 121  LLSSTFVYNSIGTINQQAMDQLHYVTELTRRIRAKSSPDKHEVLDSANFVSFFPDFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSL+L  DG+ ITADEYLE SLKLK+G  +K KNFN PRLCIRKFFP+KKCFIFDRP 
Sbjct: 181  RDFSLELVADGQPITADEYLEYSLKLKQGNDKKTKNFNEPRLCIRKFFPEKKCFIFDRPA 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             RK               +F +Q A+FC YI  +SK K         GP
Sbjct: 241  HRKYLIHLEQLQEEDLNPKFREQVADFCFYILSHSKAKTLSGGITVNGP 289


>ref|NP_001069214.1| guanylate-binding protein 5 [Bos taurus].
          Length = 586

 Score =  388 bits (997), Expect = e-108
 Identities = 195/289 (67%), Positives = 225/289 (77%), Gaps = 1/289 (0%)
 Frame = +1

Query: 172  DMASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLA 351
            DMA   HMPEP CLIEN NG L VNP+ALK+LSAI+QP+VVVAI+GLYRTGKSYLMNKLA
Sbjct: 2    DMAPLSHMPEPLCLIENTNGPLLVNPEALKILSAIRQPVVVVAIMGLYRTGKSYLMNKLA 61

Query: 352  GKNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALA 531
            GKNKGFS+GSTVQSHTKGIWMWCVPHPKK  HTLVLLDTEGLGDVEKGD  NDS I  LA
Sbjct: 62   GKNKGFSVGSTVQSHTKGIWMWCVPHPKKPNHTLVLLDTEGLGDVEKGDKTNDSHISVLA 121

Query: 532  ILLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWT 708
            +LL STFVYN+M  I+Q A+D LHYVTEL+  +R  + P+   ++D+ADFV   P+ VWT
Sbjct: 122  LLLCSTFVYNTMNKIDQGAIDLLHYVTELSHLLRIDTSPNLNRVDDAADFVRICPNLVWT 181

Query: 709  LRDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
            LRDF L LE +G+ ITADEYLENSL+ K+GT+Q  +NFNLPRLCI+KFFP KKCFIFD P
Sbjct: 182  LRDFYLGLEANGQLITADEYLENSLRPKQGTNQHLQNFNLPRLCIQKFFPVKKCFIFDLP 241

Query: 889  TQRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLG 1035
            T +KK              +FVQQ AEFCSYIF +SKTK      ++ G
Sbjct: 242  THQKKLAQLETLHNDDLDPKFVQQVAEFCSYIFSHSKTKTLSGGIKASG 290


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,946,805
Number of extensions: 1157650
Number of successful extensions: 4659
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 4594
Number of HSP's successfully gapped: 36
Length of query: 362
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 259
Effective length of database: 14,273,310
Effective search space: 3696787290
Effective search space used: 3696787290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007745
         (1086 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_867218.1| PREDICTED: similar to Interferon-induced guanyl...   450   e-126
Alignment   gi|XP_547293.2| PREDICTED: similar to Interferon-induced guanyl...   450   e-126
Alignment   gi|XP_547291.2| PREDICTED: similar to guanylate-binding protein...   393   e-109
Alignment   gi|XP_867206.1| PREDICTED: similar to Interferon-induced guanyl...   369   e-102
Alignment   gi|XP_547290.2| PREDICTED: similar to guanylate nucleotide bind...   360   1e-99
Alignment   gi|XP_867195.1| PREDICTED: similar to Interferon-induced guanyl...   159   3e-39
Alignment   gi|XP_863862.1| PREDICTED: similar to atlastin isoform 4 [Canis...    59   1e-08
Alignment   gi|XP_537440.2| PREDICTED: similar to atlastin; guanylate-bindi...    59   1e-08
Alignment   gi|XP_851462.1| PREDICTED: similar to atlastin; guanylate-bindi...    59   1e-08
Alignment   gi|XP_851410.1| PREDICTED: similar to ADP-ribosylation factor-l...    56   7e-08

>ref|XP_867218.1| PREDICTED: similar to Interferon-induced guanylate-binding protein 1
            (GTP-binding protein 1) (Guanine nucleotide-binding
            protein 1) (HuGBP-1) isoform 4 [Canis familiaris].
          Length = 466

 Score =  450 bits (1157), Expect = e-126
 Identities = 226/289 (78%), Positives = 242/289 (83%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            M S++HM  P CLI+N   +L  N +AL++LS IK PLVVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MDSEIHMSAPVCLIKNTEEQLLANQEALEILSGIKNPLVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFSLGSTVQSHTKGIWMWCVPHP+K  HTLVLLDTEGLGDVEKG+NQNDSWIFALAI
Sbjct: 61   KNKGFSLGSTVQSHTKGIWMWCVPHPQKPSHTLVLLDTEGLGDVEKGNNQNDSWIFALAI 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYNSMGTINQQAMDQLHYVTEL++RIRAKS PD  GIEDSADFVSFFPDFVWTL
Sbjct: 121  LLSSTFVYNSMGTINQQAMDQLHYVTELSDRIRAKSSPDANGIEDSADFVSFFPDFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSL+LE DG  ITADEYLE SLKLK+G +QKD+NFNLPRLCIRKFFPKKKCFIFDRPT
Sbjct: 181  RDFSLELEADGLPITADEYLEISLKLKQGNTQKDQNFNLPRLCIRKFFPKKKCFIFDRPT 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             RKK              EFVQQAA FCSYIF NSKTK      +  GP
Sbjct: 241  HRKKLGQLETMHDDELDPEFVQQAAVFCSYIFSNSKTKTLSGGIKVNGP 289


>ref|XP_547293.2| PREDICTED: similar to Interferon-induced guanylate-binding protein 1
            (GTP-binding protein 1) (Guanine nucleotide-binding
            protein 1) (HuGBP-1) isoform 1 [Canis familiaris].
          Length = 591

 Score =  450 bits (1157), Expect = e-126
 Identities = 226/289 (78%), Positives = 242/289 (83%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            M S++HM  P CLI+N   +L  N +AL++LS IK PLVVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MDSEIHMSAPVCLIKNTEEQLLANQEALEILSGIKNPLVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFSLGSTVQSHTKGIWMWCVPHP+K  HTLVLLDTEGLGDVEKG+NQNDSWIFALAI
Sbjct: 61   KNKGFSLGSTVQSHTKGIWMWCVPHPQKPSHTLVLLDTEGLGDVEKGNNQNDSWIFALAI 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYNSMGTINQQAMDQLHYVTEL++RIRAKS PD  GIEDSADFVSFFPDFVWTL
Sbjct: 121  LLSSTFVYNSMGTINQQAMDQLHYVTELSDRIRAKSSPDANGIEDSADFVSFFPDFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSL+LE DG  ITADEYLE SLKLK+G +QKD+NFNLPRLCIRKFFPKKKCFIFDRPT
Sbjct: 181  RDFSLELEADGLPITADEYLEISLKLKQGNTQKDQNFNLPRLCIRKFFPKKKCFIFDRPT 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             RKK              EFVQQAA FCSYIF NSKTK      +  GP
Sbjct: 241  HRKKLGQLETMHDDELDPEFVQQAAVFCSYIFSNSKTKTLSGGIKVNGP 289


>ref|XP_547291.2| PREDICTED: similar to guanylate-binding protein 5 [Canis familiaris].
          Length = 584

 Score =  393 bits (1009), Expect = e-109
 Identities = 196/289 (67%), Positives = 225/289 (77%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            M  K++MP P CLIEN  G+L  N +AL++LSA + PLVVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MTPKIYMPAPVCLIENNGGQLLANQEALEILSATRNPLVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFS+GSTVQSHTKGIWMWCVPHPKK  HTLVLLDTEGLGDVEKGD  ND+ IFALAI
Sbjct: 61   KNKGFSIGSTVQSHTKGIWMWCVPHPKKPNHTLVLLDTEGLGDVEKGDKNNDAQIFALAI 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYN+M  I+Q+A+D LHYVTEL+  +R  S PD EG+ED+ +  SF PDFVWTL
Sbjct: 121  LLSSTFVYNTMNKIDQKAIDLLHYVTELSNLLRKVSSPDLEGVEDATNLQSFCPDFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDF L LE DG+ ITADEYLENSL+LK+GT++  KNFNLPRLCI++FFP +KCFIFD PT
Sbjct: 181  RDFFLTLEKDGQDITADEYLENSLRLKQGTNESVKNFNLPRLCIKEFFPIRKCFIFDSPT 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             RKK              EFVQQ A FCS+IF +S TK      +  GP
Sbjct: 241  HRKKLAQLETLPNDELDPEFVQQVAGFCSHIFNHSNTKTLPGGIKVNGP 289


>ref|XP_867206.1| PREDICTED: similar to Interferon-induced guanylate-binding protein 1
            (GTP-binding protein 1) (Guanine nucleotide-binding
            protein 1) (HuGBP-1) isoform 3 [Canis familiaris].
          Length = 559

 Score =  369 bits (948), Expect = e-102
 Identities = 199/289 (68%), Positives = 215/289 (74%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            M S++HM  P CLI+N   +L  N +AL++LS IK PLVVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MDSEIHMSAPVCLIKNTEEQLLANQEALEILSGIKNPLVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFSLGSTVQSHTKGIWMWCVPHP+K  HTLVLLDTEGLGDVEKG+NQNDSWIFALAI
Sbjct: 61   KNKGFSLGSTVQSHTKGIWMWCVPHPQKPSHTLVLLDTEGLGDVEKGNNQNDSWIFALAI 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYNSMGTINQQAMDQLHYVTEL++RIRAKS PD  GIEDSADFVSFFPDFVWTL
Sbjct: 121  LLSSTFVYNSMGTINQQAMDQLHYVTELSDRIRAKSSPDANGIEDSADFVSFFPDFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSL+LE DG  ITADEYLE SLKLK+G   K K   L  +   +  P           
Sbjct: 181  RDFSLELEADGLPITADEYLEISLKLKQG---KRKTSQLETMHDDELDP----------- 226

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
                              EFVQQAA FCSYIF NSKTK      +  GP
Sbjct: 227  ------------------EFVQQAAVFCSYIFSNSKTKTLSGGIKVNGP 257


>ref|XP_547290.2| PREDICTED: similar to guanylate nucleotide binding protein 4 [Canis
            familiaris].
          Length = 627

 Score =  360 bits (924), Expect = 1e-99
 Identities = 180/283 (63%), Positives = 214/283 (75%), Gaps = 2/283 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS  +M  P CL+EN N +L+VNP A+++L  I QP+VVVAIVGLYRTGKSYLMN+L G
Sbjct: 1    MASGPNMTAPICLVENYNMQLSVNPTAIQILEKISQPVVVVAIVGLYRTGKSYLMNRLGG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            +N+GF LGSTVQS TKGIWMWCVPHP K  HTLVLLDTEGLGDVEKGD +NDSWIFALA+
Sbjct: 61   QNRGFPLGSTVQSKTKGIWMWCVPHPTKPNHTLVLLDTEGLGDVEKGDLKNDSWIFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LL STFVYNS+GTIN QA++QLHYVTELTE IRAKS P  + IEDSA+FVSFFPDF+W +
Sbjct: 121  LLCSTFVYNSLGTINHQALEQLHYVTELTELIRAKSSPKRDEIEDSAEFVSFFPDFIWAV 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDF+L+L  +   IT DEYLEN+LKL  G + + +  N PR CIR FFPK+KCF+FDRPT
Sbjct: 181  RDFTLELRLNDHPITEDEYLENALKLISGKNSRIQASNKPRECIRHFFPKRKCFVFDRPT 240

Query: 892  QRKKXXXXXXXXXXXXXS-EFVQQAAEFCSYIFLNSKTKLFQE 1017
               K                F  Q+  FCSYIF +++ K  +E
Sbjct: 241  NDTKLLANIENIPENELDPNFRTQSNNFCSYIFTHARIKTLRE 283


>ref|XP_867195.1| PREDICTED: similar to Interferon-induced guanylate-binding protein 1
            (GTP-binding protein 1) (Guanine nucleotide-binding
            protein 1) (HuGBP-1) isoform 2 [Canis familiaris].
          Length = 480

 Score =  159 bits (403), Expect = 3e-39
 Identities = 80/115 (69%), Positives = 85/115 (73%)
 Frame = +1

Query: 694  DFVWTLRDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCF 873
            DFVWTLRDFSL+LE DG  ITADEYLE SLKLK+G +QKD+NFNLPRLCIRKFFPKKKCF
Sbjct: 64   DFVWTLRDFSLELEADGLPITADEYLEISLKLKQGNTQKDQNFNLPRLCIRKFFPKKKCF 123

Query: 874  IFDRPTQRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
            IFDRPT RKK              EFVQQAA FCSYIF NSKTK      +  GP
Sbjct: 124  IFDRPTHRKKLGQLETMHDDELDPEFVQQAAVFCSYIFSNSKTKTLSGGIKVNGP 178



 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 45/65 (69%), Positives = 52/65 (80%)
 Frame = +1

Query: 175 MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
           M S++HM  P CLI+N   +L  N +AL++LS IK PLVVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1   MDSEIHMSAPVCLIKNTEEQLLANQEALEILSGIKNPLVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355 KNKGF 369
           KNK F
Sbjct: 61  KNKDF 65


>ref|XP_863862.1| PREDICTED: similar to atlastin isoform 4 [Canis familiaris].
          Length = 547

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
 Frame = +1

Query: 286 LVVVAIVGLYRTGKSYLMNKL-------------AGKNK---GFSLGSTVQSHTKGIWMW 417
           +V V++ G +R GKS+LM+ +                N+   GFS     +  T GI +W
Sbjct: 67  VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIW 126

Query: 418 C----VPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYNSMGTINQQ 585
                +  P  ++  ++L+DT+G  D  +   ++ + +FAL+ ++SS  VYN    + + 
Sbjct: 127 SEVFLINKPDGKKVAVLLMDTQGTFD-SQSTLRDSATVFALSTMISSIQVYNLSQNVQE- 184

Query: 586 AMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTLRDFSLDLETDGESITADE 765
             D L ++   TE  R   E          F+  F   ++ +RD+S   E    +    +
Sbjct: 185 --DDLQHLQLFTEYGRLAME--------EIFLKPFQSLIFLVRDWSFPYEFSYGAEGGSK 234

Query: 766 YLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
           +LE  LK+     ++ +N    R  I   F K  CF+   P
Sbjct: 235 FLEKRLKVSGNQHEELQNV---RKHIHSCFTKISCFLLPHP 272


>ref|XP_537440.2| PREDICTED: similar to atlastin; guanylate-binding protein 3 isoform
           1 [Canis familiaris].
          Length = 553

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
 Frame = +1

Query: 286 LVVVAIVGLYRTGKSYLMNKL-------------AGKNK---GFSLGSTVQSHTKGIWMW 417
           +V V++ G +R GKS+LM+ +                N+   GFS     +  T GI +W
Sbjct: 67  VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIW 126

Query: 418 C----VPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYNSMGTINQQ 585
                +  P  ++  ++L+DT+G  D  +   ++ + +FAL+ ++SS  VYN    + + 
Sbjct: 127 SEVFLINKPDGKKVAVLLMDTQGTFD-SQSTLRDSATVFALSTMISSIQVYNLSQNVQE- 184

Query: 586 AMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTLRDFSLDLETDGESITADE 765
             D L ++   TE  R   E          F+  F   ++ +RD+S   E    +    +
Sbjct: 185 --DDLQHLQLFTEYGRLAME--------EIFLKPFQSLIFLVRDWSFPYEFSYGAEGGSK 234

Query: 766 YLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
           +LE  LK+     ++ +N    R  I   F K  CF+   P
Sbjct: 235 FLEKRLKVSGNQHEELQNV---RKHIHSCFTKISCFLLPHP 272


>ref|XP_851462.1| PREDICTED: similar to atlastin; guanylate-binding protein 3 isoform
           2 [Canis familiaris].
          Length = 558

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
 Frame = +1

Query: 286 LVVVAIVGLYRTGKSYLMNKL-------------AGKNK---GFSLGSTVQSHTKGIWMW 417
           +V V++ G +R GKS+LM+ +                N+   GFS     +  T GI +W
Sbjct: 67  VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIW 126

Query: 418 C----VPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYNSMGTINQQ 585
                +  P  ++  ++L+DT+G  D  +   ++ + +FAL+ ++SS  VYN    + + 
Sbjct: 127 SEVFLINKPDGKKVAVLLMDTQGTFD-SQSTLRDSATVFALSTMISSIQVYNLSQNVQE- 184

Query: 586 AMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTLRDFSLDLETDGESITADE 765
             D L ++   TE  R   E          F+  F   ++ +RD+S   E    +    +
Sbjct: 185 --DDLQHLQLFTEYGRLAME--------EIFLKPFQSLIFLVRDWSFPYEFSYGAEGGSK 234

Query: 766 YLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
           +LE  LK+     ++ +N    R  I   F K  CF+   P
Sbjct: 235 FLEKRLKVSGNQHEELQNV---RKHIHSCFTKISCFLLPHP 272


>ref|XP_851410.1| PREDICTED: similar to ADP-ribosylation factor-like 6 interacting
           protein 2 isoform 3 [Canis familiaris].
          Length = 583

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
 Frame = +1

Query: 286 LVVVAIVGLYRTGKSYLM--------NK-----LAGKNK---GFSLGSTVQSHTKGIWMW 417
           +VVV++ G +R GKS+L+        NK     + G N+   GF+     +  T GI +W
Sbjct: 94  IVVVSVAGAFRKGKSFLLDFMLRYMYNKDSQSWIGGNNEPLTGFTWRGGCERETTGIQVW 153

Query: 418 ----CVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYNSMGTINQQ 585
                +  P   +  ++L+DT+G  D  +   ++ + +FAL+ + SS  VYN    I + 
Sbjct: 154 NEVFVIDRPNGTKVAVLLMDTQGAFD-SQSTIKDCATVFALSTMTSSVQVYNLSQNIQE- 211

Query: 586 AMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTLRDFSLDLETDGESITADE 765
             D L ++   TE  R   E          +   F   ++ +RD+S   E         +
Sbjct: 212 --DDLQHLQLFTEYGRLAME--------EIYQKPFQTLMFLIRDWSYPYEHSYGLEGGKQ 261

Query: 766 YLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
           +LE  L++K+   ++ +N    R  I   F    CF+   P
Sbjct: 262 FLEKRLQVKQNQHEELQNV---RKHIHNCFSNLGCFLLPHP 299


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,665,742
Number of extensions: 1184038
Number of successful extensions: 4248
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4220
Number of HSP's successfully gapped: 15
Length of query: 362
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 258
Effective length of database: 15,407,560
Effective search space: 3975150480
Effective search space used: 3975150480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007745
         (1086 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001121945.1| interferon-induced guanylate-binding protein...   530   e-151
Alignment   gi|XP_003125970.2| PREDICTED: interferon-induced guanylate-bind...   434   e-122
Alignment   gi|NP_001121946.1| interferon-induced guanylate-binding protein...   416   e-117
Alignment   gi|XP_003125968.2| PREDICTED: guanylate-binding protein 5-like ...   400   e-112
Alignment   gi|XP_003355347.1| PREDICTED: guanylate-binding protein 6 [Sus ...   360   e-100
Alignment   gi|XP_001927964.1| PREDICTED: guanylate-binding protein 4 [Sus ...   276   1e-74
Alignment   gi|XP_003122651.2| PREDICTED: atlastin-3 [Sus scrofa].                57   2e-08
Alignment   gi|XP_003125271.1| PREDICTED: atlastin-2-like, partial [Sus scr...    56   4e-08
Alignment   gi|XP_001925533.3| PREDICTED: atlastin-1, partial [Sus scrofa].       52   4e-07

>ref|NP_001121945.1| interferon-induced guanylate-binding protein 1 [Sus scrofa].
          Length = 590

 Score =  530 bits (1366), Expect = e-151
 Identities = 264/288 (91%), Positives = 265/288 (92%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MASKVHMPEPQCLIENINGRL VNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MASKVHMPEPQCLIENINGRLVVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTL LLDTEGLGDVEKGDNQNDSWIFALAI
Sbjct: 61   KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLALLDTEGLGDVEKGDNQNDSWIFALAI 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTLR 714
            LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTLR
Sbjct: 121  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTLR 180

Query: 715  DFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPTQ 894
            DFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPTQ
Sbjct: 181  DFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPTQ 240

Query: 895  RKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
            RKK             SEFVQQAAEFCSYIFLNSKTK      +  GP
Sbjct: 241  RKKLGQLEDLGDDELDSEFVQQAAEFCSYIFLNSKTKTLSGGIKVTGP 288



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 29/44 (65%), Positives = 34/44 (77%)
 Frame = +3

Query: 954  ATSCRVLFLHLLKFQNETLSGGIKVTGPRLETLVLTFCHTISSG 1085
            A  C  +FL+    + +TLSGGIKVTGPRLETLVLTF +TISSG
Sbjct: 264  AEFCSYIFLNS---KTKTLSGGIKVTGPRLETLVLTFVNTISSG 304


>ref|XP_003125970.2| PREDICTED: interferon-induced guanylate-binding protein 2-like
            isoform 2 [Sus scrofa].
          Length = 591

 Score =  434 bits (1115), Expect = e-122
 Identities = 218/289 (75%), Positives = 235/289 (81%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS VHMPEPQCLIENINGRL V+PKALKLLSAIKQPLVVVAIVG YRTGKSYLMNKLAG
Sbjct: 1    MASGVHMPEPQCLIENINGRLVVSPKALKLLSAIKQPLVVVAIVGPYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFSLGSTVQSHTKGIWMWCVPHP+  +HTLVLLDTEGLGDVEKGDNQNDSW+FALA+
Sbjct: 61   KNKGFSLGSTVQSHTKGIWMWCVPHPRNPDHTLVLLDTEGLGDVEKGDNQNDSWLFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSST +YNSMGTINQQAMDQLHYVTELT  IRAKS      ++DSADFVSFFPDFVWTL
Sbjct: 121  LLSSTLIYNSMGTINQQAMDQLHYVTELTHCIRAKSSSGRHEVKDSADFVSFFPDFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSL+LE + E I ADEYLENSLKL++G  +K K+FN  RLCIRKFFP+KKCFIFDRP 
Sbjct: 181  RDFSLELEANSEPIIADEYLENSLKLRQGNDKKTKSFNETRLCIRKFFPEKKCFIFDRPA 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
            QRK               EF +Q  EFCSYI  +SK K         GP
Sbjct: 241  QRKYLVHLEQLPEEDVDPEFREQVEEFCSYILSHSKVKTLSGGITVNGP 289


>ref|NP_001121946.1| interferon-induced guanylate-binding protein 2 [Sus scrofa].
          Length = 591

 Score =  416 bits (1070), Expect = e-117
 Identities = 207/289 (71%), Positives = 231/289 (79%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MA+++ M  P+CLIENINGRL VN +  K+LSAI QP+VVV IVG YRTGKSYLM KLAG
Sbjct: 1    MATEILMAGPECLIENINGRLMVNLETAKILSAITQPVVVVVIVGPYRTGKSYLMYKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFSLGSTVQSHTKGIWMWCVPHP+  +HTLVLLDTEGLGDVEKGDNQNDSW+FALA+
Sbjct: 61   KNKGFSLGSTVQSHTKGIWMWCVPHPRNPDHTLVLLDTEGLGDVEKGDNQNDSWLFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSST +YNS+GTINQQAMDQLHYVTELT+ IRAKS P    ++DSADFVSFFPDFVWTL
Sbjct: 121  LLSSTLIYNSVGTINQQAMDQLHYVTELTDCIRAKSSPGRHEVKDSADFVSFFPDFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSLDL+ +GE IT DEYLENSLKLK+G  +K K+FN PRLCIRKFFP+KKCFIFDRP 
Sbjct: 181  RDFSLDLQANGEPITPDEYLENSLKLKQGNDKKTKSFNAPRLCIRKFFPEKKCFIFDRPA 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
            QRK               EF +Q  EFCSYI  +SK K         GP
Sbjct: 241  QRKYLVHLEQLPEEDVDPEFREQVEEFCSYILSHSKVKTLSGGITVNGP 289


>ref|XP_003125968.2| PREDICTED: guanylate-binding protein 5-like [Sus scrofa].
          Length = 586

 Score =  400 bits (1027), Expect = e-112
 Identities = 202/288 (70%), Positives = 226/288 (78%), Gaps = 1/288 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS VHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MASGVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFS+GSTVQSHTKGIWMWCVPHP+K +HTLVLLDTEGLGDVEKGD +ND+ IF LA+
Sbjct: 61   KNKGFSVGSTVQSHTKGIWMWCVPHPRKPDHTLVLLDTEGLGDVEKGDKKNDTQIFVLAL 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYN+M  I+Q+A+D LHYV EL   ++  S  D + +    D VS  PD VWTL
Sbjct: 121  LLSSTFVYNTMNKIDQRAIDLLHYVAELATWLQTVSSTDADEVSGPEDSVSNCPDLVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDF LDLE +G  IT DEYLENSL+ K G  +  +NFNLPR CI+KFFP KKCFIFD PT
Sbjct: 181  RDFFLDLEVNGHPITTDEYLENSLRPKPGADKSLQNFNLPRQCIQKFFPTKKCFIFDSPT 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLG 1035
             RKK              +FVQQ AEFCSYIF +SK+K   E S++ G
Sbjct: 241  HRKKLAQLETLHDDDLEPDFVQQVAEFCSYIFSHSKSKTLPEGSKANG 288


>ref|XP_003355347.1| PREDICTED: guanylate-binding protein 6 [Sus scrofa].
          Length = 639

 Score =  360 bits (925), Expect = e-100
 Identities = 181/289 (62%), Positives = 216/289 (74%), Gaps = 2/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS  +M +P CLI+N N  L+VN +AL++L  I QP+VVVAIVGLYRTGKSYLMN+LAG
Sbjct: 1    MASGPNMTDPICLIKNNNELLSVNQEALEILEKISQPVVVVAIVGLYRTGKSYLMNRLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            +N GF LGSTVQS TKGIWMWCVPHP K + TLVLLDTEGLGDVEKGD +NDSWIFALA+
Sbjct: 61   RNHGFRLGSTVQSETKGIWMWCVPHPSKPDCTLVLLDTEGLGDVEKGDPKNDSWIFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSS FVYNS  TIN QA++QLHYV ELTE IR KS  + +G+ED  +FVSFFPDF+W +
Sbjct: 121  LLSSVFVYNSTNTINHQALEQLHYVAELTELIRTKSSSENDGVEDCTEFVSFFPDFIWIV 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDF+LDL+  G  +T DEYLEN+LKL  G + K +  NLPR CIR FFPK+KCF+FDRPT
Sbjct: 181  RDFTLDLKLHGHPVTEDEYLENALKLIPGNNPKARISNLPRECIRHFFPKRKCFVFDRPT 240

Query: 892  QRKKXXXXXXXXXXXXXS-EFVQQAAEFCSYIFLNSKTKLFQEASRSLG 1035
              K                +F +QA  FCSYIF N+KTK  ++    +G
Sbjct: 241  HDKDLLANIENVSDDQLDPKFQEQANNFCSYIFTNAKTKTLRDGITVVG 289


>ref|XP_001927964.1| PREDICTED: guanylate-binding protein 4 [Sus scrofa].
          Length = 604

 Score =  276 bits (707), Expect = 1e-74
 Identities = 151/283 (53%), Positives = 180/283 (63%), Gaps = 2/283 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS     +P CL++N N  L VNPKALK+L  I QP+VVV I GLYRTGKSYLMN+LAG
Sbjct: 1    MASGATTMDPICLVKNQNNHLTVNPKALKILGEICQPVVVVTIAGLYRTGKSYLMNRLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            +N                                       GDVEKGD++NDSWIFALA+
Sbjct: 61   QNHXXXXXXXXX-----------------------------GDVEKGDSKNDSWIFALAV 91

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDEG-IEDSADFVSFFPDFVWTL 711
            LLSS FVYNSM TIN QA++QLHYVTELT+ IR  S    G  EDSA FVSFFPDFVWT+
Sbjct: 92   LLSSVFVYNSMNTINHQALEQLHYVTELTKLIRTTSSAISGEAEDSAKFVSFFPDFVWTV 151

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDF L+LE DG  IT DEYLEN+LKL  G +   +N N+PR CIRKFFPK+KCF+FDRPT
Sbjct: 152  RDFMLELELDGYPITEDEYLENALKLIPGWNPNIQNSNMPRECIRKFFPKRKCFVFDRPT 211

Query: 892  -QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQE 1017
              R++               F++Q+  FCSYIF ++KTK   +
Sbjct: 212  NNRQQLLHIEELPDDQLDRNFLEQSKNFCSYIFDHAKTKTLSD 254


>ref|XP_003122651.2| PREDICTED: atlastin-3 [Sus scrofa].
          Length = 523

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 67/271 (24%), Positives = 109/271 (40%), Gaps = 23/271 (8%)
 Frame = +1

Query: 286  LVVVAIVGLYRTGKSYLMN---------KLAGKNK----------GFSLGSTVQSHTKGI 408
            +VVV++ G +R GKS+ ++         K  G +           GFS        T GI
Sbjct: 42   VVVVSVAGAFRKGKSFFLDFMLRYLYFQKEGGHSNWLGDPEEPLTGFSWRGGSDPETTGI 101

Query: 409  WMW----CVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYNSMGTI 576
             +W     V  P  ++  +VL+DT+G  D  +   ++ + IFAL+ + SS  +YN    I
Sbjct: 102  QIWNEVFTVEKPGGKKVAVVLMDTQGAFD-SQSTVKDCATIFALSTMTSSVQIYNLSQNI 160

Query: 577  NQQAMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTLRDFSLDLETDGESIT 756
             +  + QL   TE       +   DE       F   F   ++ +RD+S   E +     
Sbjct: 161  QEDDLQQLQLFTEY-----GRLAMDE------IFQKPFQTLMFLVRDWSFPYEYNYGLQG 209

Query: 757  ADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPTQRKKXXXXXXXXXXX 936
               +LE  L++K+   ++ +N    R  I   F    CF+   P  R             
Sbjct: 210  GMSFLEKRLQVKEHQHEEIQNV---RNHIHSCFSSVTCFLLPHPGLRVATSPDFDGKLKD 266

Query: 937  XXSEFVQQAAEFCSYIFLNSKTKLFQEASRS 1029
              SEF +Q      Y+ LN    + +E + S
Sbjct: 267  IDSEFKEQLQILIPYV-LNPANLMEKEINGS 296


>ref|XP_003125271.1| PREDICTED: atlastin-2-like, partial [Sus scrofa].
          Length = 544

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
 Frame = +1

Query: 286 LVVVAIVGLYRTGKSYLM--------NK-----LAGKNK---GFSLGSTVQSHTKGIWMW 417
           +VVV++ G +R GKS+L+        NK     + G N+   GF+     +  T GI +W
Sbjct: 54  IVVVSVAGAFRKGKSFLLDFMLRYMYNKDSQSWIGGNNEPLTGFTWRGGCERETTGIQVW 113

Query: 418 ----CVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYNSMGTINQQ 585
                +  P   +  ++L+DT+G  D  +   ++ + +FAL+ + SS  VYN    I + 
Sbjct: 114 NEVFVIDRPNGTKVAVLLMDTQGAFD-SQSTIKDCATVFALSTMTSSVQVYNLSQNIQE- 171

Query: 586 AMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTLRDFSLDLETDGESITADE 765
             D L ++   TE  R   E          +   F   ++ +RD+S   E         +
Sbjct: 172 --DDLQHLQLFTEYGRLAME--------EIYQKPFQTLMFLIRDWSYPYEHSYGLEGGKQ 221

Query: 766 YLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
           +LE  L++K+   ++ +N    R  I   F    CF+   P
Sbjct: 222 FLEKRLQVKQNQHEELQNV---RKHIHNCFSNLGCFLLPHP 259


>ref|XP_001925533.3| PREDICTED: atlastin-1, partial [Sus scrofa].
          Length = 464

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 4/179 (2%)
 Frame = +1

Query: 364 GFSLGSTVQSHTKGIWMWC----VPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALA 531
           GFS     +  T GI +W     +  P  ++  ++L+DT+G  D  +   ++ + +FAL+
Sbjct: 15  GFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMDTQGTFD-SQSTLRDSATVFALS 73

Query: 532 ILLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTL 711
            ++SS  VYN    + +   D L ++   TE  R   E          F+  F   ++ +
Sbjct: 74  TMISSIQVYNLSQNVQE---DDLQHLQLFTEYGRLAME--------ETFLKPFQSLIFLV 122

Query: 712 RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
           RD+S   E    +    ++LE  LK+     ++ +N    R  I   F K  CF+   P
Sbjct: 123 RDWSFPYEFSYGADGGSKFLEKRLKVSGNQHEELQNV---RKHIHSCFTKISCFLLPHP 178


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,006,469
Number of extensions: 740610
Number of successful extensions: 2878
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2860
Number of HSP's successfully gapped: 11
Length of query: 362
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,854,232
Effective search space: 2319808784
Effective search space used: 2319808784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007745
         (1086 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034390.1| interferon-induced guanylate-binding protein 2 ...   411   e-118
Alignment   gi|NP_034389.2| interferon-induced guanylate-binding protein 1 ...   399   e-111
Alignment   gi|NP_705792.2| guanylate-binding protein 5 [Mus musculus].          369   e-102
Alignment   gi|NP_001076781.1| guanylate binding protein 7 [Mus musculus].       368   e-102
Alignment   gi|NP_663520.2| guanylate binding protein 7 [Mus musculus].          368   e-102
Alignment   gi|NP_061204.3| guanylate-binding protein 4 [Mus musculus].          355   e-101
Alignment   gi|NP_919317.2| guanylate binding protein 6 [Mus musculus].          342   4e-94
Alignment   gi|NP_001034736.2| guanylate binding protein 11 [Mus musculus].      337   1e-92
Alignment   gi|NP_766365.1| guanylate binding protein family, member 9 [Mus...   337   1e-92
Alignment   gi|NP_001034735.2| guanylate-binding protein 10 [Mus musculus].      333   1e-91

>ref|NP_034390.1| interferon-induced guanylate-binding protein 2 [Mus musculus].
          Length = 589

 Score =  411 bits (1056), Expect(2) = e-118
 Identities = 200/278 (71%), Positives = 229/278 (82%), Gaps = 1/278 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS++HM EP CLIEN   +L +N +AL++LSAI QP+VVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MASEIHMSEPMCLIENTEAQLVINQEALRILSAITQPVVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            K  GFSLGSTVQSHTKGIWMWCVPHPKK   TLVLLDTEGL DVEKGDNQND WIFALA+
Sbjct: 61   KRTGFSLGSTVQSHTKGIWMWCVPHPKKAGQTLVLLDTEGLEDVEKGDNQNDCWIFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDE-GIEDSADFVSFFPDFVWTL 711
            LLSSTF+YNS+GTINQQAMDQLHYVTELT+ I++KS PD+ G++DSA+FV FFP FVWTL
Sbjct: 121  LLSSTFIYNSIGTINQQAMDQLHYVTELTDLIKSKSSPDQSGVDDSANFVGFFPTFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSL+LE +G+ +T+DEYLE+SL LKKG  +K K+FN PRLCIRKFFPK+KCFIFDRP 
Sbjct: 181  RDFSLELEVNGKPVTSDEYLEHSLTLKKGADKKTKSFNEPRLCIRKFFPKRKCFIFDRPA 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTK 1005
            QRK+              EFV+Q AEF SYI   S  K
Sbjct: 241  QRKQLSKLETLREEELCGEFVEQVAEFTSYILSYSSVK 278



 Score = 33.9 bits (76), Expect(2) = e-118
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 1002 ETLSGGIKVTGPRLETLVLTFCHTISSG 1085
            +TL GGI V GPRL++LV T+   IS+G
Sbjct: 278  KTLCGGIIVNGPRLKSLVQTYVGAISNG 305


>ref|NP_034389.2| interferon-induced guanylate-binding protein 1 [Mus musculus].
          Length = 589

 Score =  399 bits (1026), Expect = e-111
 Identities = 198/289 (68%), Positives = 227/289 (78%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS++HM  P CLI+N   +L V  +AL +LSAI+ P+VVVAIVG Y TGKSYLMNKLAG
Sbjct: 1    MASEIHMKGPVCLIKNSGEQLEVYQEALDILSAIQNPVVVVAIVGFYHTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            K KGFSLGSTVQSHTKGIWMWC+PHP+K EHTLVLLDTEGL D++KGDNQND WIFALA+
Sbjct: 61   KQKGFSLGSTVQSHTKGIWMWCMPHPEKPEHTLVLLDTEGLKDMQKGDNQNDCWIFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDEG-IEDSADFVSFFPDFVWTL 711
            LLSSTF+YNS+GTINQQAMDQLHYVTELT+ I++KS PD+  +++SA+FV FFP FVWTL
Sbjct: 121  LLSSTFIYNSIGTINQQAMDQLHYVTELTDLIKSKSSPDQSDVDNSANFVGFFPIFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSLDLE DGESIT DEYLE SL L+KGT +  K FN+PRLCIRKFFPK+KCFIFDRP 
Sbjct: 181  RDFSLDLEFDGESITPDEYLETSLALRKGTDENTKKFNMPRLCIRKFFPKRKCFIFDRPG 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             RK+              EFV+Q AEF SYIF  S  K         GP
Sbjct: 241  DRKQLSKLEWIQEDQLNKEFVEQVAEFTSYIFSYSGVKTLSGGITVNGP 289


>ref|NP_705792.2| guanylate-binding protein 5 [Mus musculus].
          Length = 590

 Score =  369 bits (947), Expect = e-102
 Identities = 188/292 (64%), Positives = 222/292 (76%), Gaps = 4/292 (1%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MA ++HMPEP CLI +  G L  N +ALK+LSAI QP+VVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MAPEIHMPEPLCLIGSTEGHLVTNQEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            K KGFS+GSTVQSHTKGIWMWCVPHP+K +HTLVLLDTEGLGDVEK D +ND+ IFALAI
Sbjct: 61   KEKGFSVGSTVQSHTKGIWMWCVPHPQKPDHTLVLLDTEGLGDVEKDDKKNDTQIFALAI 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD----EGIEDSADFVSFFPDFV 702
            LLSSTFVYN+M  I+Q A+D LH VTELT+ +R ++  D    EG E  AD +SFFPD V
Sbjct: 121  LLSSTFVYNTMNKIDQGAIDLLHNVTELTDLLRTRNSSDSNQTEG-EGPAD-MSFFPDLV 178

Query: 703  WTLRDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFD 882
            WTLRDF LDL+ +G +IT+DEYLENSLKLK+G+ ++ + FNLPRLCI+KFFP KKCF+FD
Sbjct: 179  WTLRDFFLDLQANGHAITSDEYLENSLKLKQGSDERTQTFNLPRLCIQKFFPVKKCFVFD 238

Query: 883  RPTQRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             P    K             S+FVQ  +EFCS+IF  SKTK      +  GP
Sbjct: 239  APALGSKLSQLPTLSNEELNSDFVQDLSEFCSHIFTQSKTKTLPGGIQVNGP 290


>ref|NP_001076781.1| guanylate binding protein 7 [Mus musculus].
          Length = 638

 Score =  368 bits (945), Expect = e-102
 Identities = 186/283 (65%), Positives = 218/283 (77%), Gaps = 2/283 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS  +M  P CL+EN N  L VN KA+ +L  I QP+VVVAIVGLYRTGKSYLMN+LAG
Sbjct: 1    MASGPNMEAPVCLVENENEELRVNSKAINILERITQPVVVVAIVGLYRTGKSYLMNRLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            +N GF+LG+TV+S TKGIWMWCVPHP K + TLVLLDTEGLGDVEKGD +NDSWIFALA+
Sbjct: 61   QNHGFNLGTTVRSETKGIWMWCVPHPSKPKFTLVLLDTEGLGDVEKGDPKNDSWIFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKS-EPDEGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYNSM TIN QA++QLHYVTELTERIRAKS    E ++DS +FVSFFPDF+WT+
Sbjct: 121  LLSSTFVYNSMSTINHQALEQLHYVTELTERIRAKSTSRSEEVDDSDEFVSFFPDFIWTV 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDF L+L+ +G  ITADEYLEN+LKL  G S K +  NLPR CIR FFP++KCF+FDRPT
Sbjct: 181  RDFVLELKLEGRVITADEYLENALKLIPGMSIKAQKANLPRECIRHFFPRRKCFVFDRPT 240

Query: 892  QRKKXXXXXXXXXXXXXS-EFVQQAAEFCSYIFLNSKTKLFQE 1017
            + K+                F  Q+ EFCSYIF NSK K  +E
Sbjct: 241  KDKELLVHVEEMPEDQLDHSFQVQSKEFCSYIFSNSKAKTLKE 283


>ref|NP_663520.2| guanylate binding protein 7 [Mus musculus].
          Length = 638

 Score =  368 bits (945), Expect = e-102
 Identities = 186/283 (65%), Positives = 218/283 (77%), Gaps = 2/283 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS  +M  P CL+EN N  L VN KA+ +L  I QP+VVVAIVGLYRTGKSYLMN+LAG
Sbjct: 1    MASGPNMEAPVCLVENENEELRVNSKAINILERITQPVVVVAIVGLYRTGKSYLMNRLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            +N GF+LG+TV+S TKGIWMWCVPHP K + TLVLLDTEGLGDVEKGD +NDSWIFALA+
Sbjct: 61   QNHGFNLGTTVRSETKGIWMWCVPHPSKPKFTLVLLDTEGLGDVEKGDPKNDSWIFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKS-EPDEGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYNSM TIN QA++QLHYVTELTERIRAKS    E ++DS +FVSFFPDF+WT+
Sbjct: 121  LLSSTFVYNSMSTINHQALEQLHYVTELTERIRAKSTSRSEEVDDSDEFVSFFPDFIWTV 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDF L+L+ +G  ITADEYLEN+LKL  G S K +  NLPR CIR FFP++KCF+FDRPT
Sbjct: 181  RDFVLELKLEGRVITADEYLENALKLIPGMSIKAQKANLPRECIRHFFPRRKCFVFDRPT 240

Query: 892  QRKKXXXXXXXXXXXXXS-EFVQQAAEFCSYIFLNSKTKLFQE 1017
            + K+                F  Q+ EFCSYIF NSK K  +E
Sbjct: 241  KDKELLVHVEEMPEDQLDHSFQVQSKEFCSYIFSNSKAKTLKE 283


>ref|NP_061204.3| guanylate-binding protein 4 [Mus musculus].
          Length = 620

 Score =  355 bits (912), Expect(2) = e-101
 Identities = 175/273 (64%), Positives = 212/273 (77%), Gaps = 2/273 (0%)
 Frame = +1

Query: 193  MPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAGKNKGFS 372
            M  P CL+EN   +L VN +A+++L  I QPLVVVAIVGLYRTGKSYLMN+LAG+N GFS
Sbjct: 1    MEAPICLVENWKNQLTVNLEAIRILEQIAQPLVVVAIVGLYRTGKSYLMNRLAGRNHGFS 60

Query: 373  LGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTF 552
            LGSTVQS TKGIWMWCVPHP K  HTLVLLDTEGLGDVEKGD +NDSWIFALA+LLSSTF
Sbjct: 61   LGSTVQSETKGIWMWCVPHPTKPTHTLVLLDTEGLGDVEKGDPKNDSWIFALAVLLSSTF 120

Query: 553  VYNSMGTINQQAMDQLHYVTELTERIRAKSEP-DEGIEDSADFVSFFPDFVWTLRDFSLD 729
            VYNSM TINQQA++QLH+VTELT+ IRAKS P ++ ++DS++FV FFPDF+W +RDF+L+
Sbjct: 121  VYNSMSTINQQALEQLHFVTELTQLIRAKSSPREDKVKDSSEFVGFFPDFIWAVRDFALE 180

Query: 730  LETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPTQRKKXX 909
            L+ +G  IT DEYLEN+LKL +G + K +  N+ R CIR FFP +KCF+FDRPT  K+  
Sbjct: 181  LKLNGRPITEDEYLENALKLIQGDNLKVQQSNMTRECIRYFFPVRKCFVFDRPTSDKRLL 240

Query: 910  XXXXXXXXXXXS-EFVQQAAEFCSYIFLNSKTK 1005
                          F  ++ +FCSYIF N KTK
Sbjct: 241  LQIENVPENQLERNFQVESEKFCSYIFTNGKTK 273



 Score = 33.9 bits (76), Expect(2) = e-101
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +3

Query: 996  QNETLSGGIKVTGPRLETLVLTFCHTISSG 1085
            + +TL GG+ VTG RL TLV T+ + I+SG
Sbjct: 271  KTKTLRGGVIVTGNRLGTLVQTYVNAINSG 300


>ref|NP_919317.2| guanylate binding protein 6 [Mus musculus].
          Length = 611

 Score =  342 bits (876), Expect = 4e-94
 Identities = 173/280 (61%), Positives = 210/280 (75%), Gaps = 2/280 (0%)
 Frame = +1

Query: 202  PQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAGKNKGFSLGS 381
            P CL+EN N +L+VN +A+++L  I QP+VVVAIVGLYRTGKSYLMN LAG+N GF LGS
Sbjct: 8    PICLVENHNEQLSVNQEAIEILDKISQPVVVVAIVGLYRTGKSYLMNCLAGQNHGFPLGS 67

Query: 382  TVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYN 561
            TVQS TKGIWMWC+PHP K EHTLVLLDTEGLGDVEKGD +ND WIFAL++LLSSTF+YN
Sbjct: 68   TVQSQTKGIWMWCMPHPTKPEHTLVLLDTEGLGDVEKGDPKNDLWIFALSVLLSSTFIYN 127

Query: 562  SMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTLRDFSLDLET 738
            SM TIN QA++QLHYVTELTE IRAKS P+  GI++S +FVSFFPDFVWT+RDF L+L+ 
Sbjct: 128  SMITINHQALEQLHYVTELTELIRAKSSPNPAGIKNSTEFVSFFPDFVWTVRDFMLELKL 187

Query: 739  DGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPTQRKKXXXXX 918
            +GE IT+D+YLEN+LKL  G   + +  N  R CIR FFP +KCF+FDRPT  K+     
Sbjct: 188  NGEDITSDDYLENALKLIPGDKPRMQASNSCRECIRLFFPNRKCFVFDRPTHDKELLQKL 247

Query: 919  XXXXXXXXS-EFVQQAAEFCSYIFLNSKTKLFQEASRSLG 1035
                      +F +    F SYIF  +K K  +E  +  G
Sbjct: 248  DSITEDQLDPKFQEVTKAFVSYIFTYAKIKTLKEGIKVTG 287


>ref|NP_001034736.2| guanylate binding protein 11 [Mus musculus].
          Length = 619

 Score =  337 bits (863), Expect = 1e-92
 Identities = 169/280 (60%), Positives = 209/280 (74%), Gaps = 2/280 (0%)
 Frame = +1

Query: 202  PQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAGKNKGFSLGS 381
            P CL+EN N +L VN +A+++L  I QP+VVVAIVGLYRTGKSYLMN+LAG+N GF LGS
Sbjct: 8    PICLVENHNEQLLVNQEAIEILDKISQPVVVVAIVGLYRTGKSYLMNRLAGQNHGFPLGS 67

Query: 382  TVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYN 561
            TVQS TKGIWMWCVPHP K EHTLVLLDTEGLGDVEKGD +ND WIFAL++LLSSTF+YN
Sbjct: 68   TVQSQTKGIWMWCVPHPTKPEHTLVLLDTEGLGDVEKGDPKNDLWIFALSVLLSSTFIYN 127

Query: 562  SMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTLRDFSLDLET 738
            SM TI+  ++++LHYVTELTE IRAKS P+  GI++S +FVSFFPDFVWT+RDF+L L+ 
Sbjct: 128  SMNTISHDSLEKLHYVTELTELIRAKSSPNPHGIKNSTEFVSFFPDFVWTVRDFTLKLKL 187

Query: 739  DGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPTQRKKXXXXX 918
            +GE IT+D YLEN+LKL    + + +  NL R CIR+FFP +KCF+FDRPT   +     
Sbjct: 188  NGEDITSDGYLENALKLIPDNNPRMQASNLARECIRRFFPNRKCFVFDRPTYDIELLQKL 247

Query: 919  XXXXXXXXSEFVQQAAE-FCSYIFLNSKTKLFQEASRSLG 1035
                        Q+  + F SYIF  +K K  +E  +  G
Sbjct: 248  ETISEDQLDPMFQERTKAFVSYIFNYAKIKTLKEGIKVTG 287


>ref|NP_766365.1| guanylate binding protein family, member 9 [Mus musculus].
          Length = 619

 Score =  337 bits (863), Expect = 1e-92
 Identities = 171/280 (61%), Positives = 209/280 (74%), Gaps = 2/280 (0%)
 Frame = +1

Query: 202  PQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAGKNKGFSLGS 381
            P CL+EN N +L VN +A+++L  I QP+VVVAIVGLYRTGKSYLMN LAG+N GF LGS
Sbjct: 8    PICLVENHNEQLLVNQEAIEILEKISQPVVVVAIVGLYRTGKSYLMNCLAGQNHGFPLGS 67

Query: 382  TVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYN 561
            TVQS TKGIWMWC+PHP K EHTLVLLDTEGLGDVEK + +NDSWIFAL++LLSSTFVYN
Sbjct: 68   TVQSQTKGIWMWCMPHPTKPEHTLVLLDTEGLGDVEKSNPKNDSWIFALSVLLSSTFVYN 127

Query: 562  SMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTLRDFSLDLET 738
            SM TIN QA++QLHYVTELTE IR+KS  +  GI++S +FVSFFPDFVWT+RDF L+L+ 
Sbjct: 128  SMSTINHQALEQLHYVTELTELIRSKSSRNPHGIKNSTEFVSFFPDFVWTVRDFMLELKL 187

Query: 739  DGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT-QRKKXXXX 915
            +GE IT+DEYLEN+LKL  G + + +  N  R CIR FFP +KCF+FDRPT  R+     
Sbjct: 188  NGEDITSDEYLENALKLIPGYNPRVQASNSARECIRCFFPNRKCFVFDRPTHDRELLQKL 247

Query: 916  XXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLG 1035
                      +F +    F SY+F  +K K  +E  +  G
Sbjct: 248  ETISEDQLDLKFREGTKAFVSYVFTYAKIKTLREGIKVTG 287


>ref|NP_001034735.2| guanylate-binding protein 10 [Mus musculus].
          Length = 611

 Score =  333 bits (855), Expect = 1e-91
 Identities = 170/280 (60%), Positives = 207/280 (73%), Gaps = 2/280 (0%)
 Frame = +1

Query: 202  PQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAGKNKGFSLGS 381
            P CL+EN N +L+VN +A+++L  I QP+VVVAIVG  RTGKSYLMN LAG+N GF LGS
Sbjct: 8    PICLVENHNEQLSVNQEAIEILDKISQPVVVVAIVGWSRTGKSYLMNCLAGQNHGFPLGS 67

Query: 382  TVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYN 561
            TVQS TKGIWMWC+PHP K EHTLVLLDTEGLGDVEKGD +ND WIFAL++LLSSTF+YN
Sbjct: 68   TVQSQTKGIWMWCMPHPTKPEHTLVLLDTEGLGDVEKGDPKNDLWIFALSVLLSSTFIYN 127

Query: 562  SMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTLRDFSLDLET 738
            SM TIN QA++QLHYVTELTE IRAKS P+  GI++S +FVSFFPDFVW +RDF L+L+ 
Sbjct: 128  SMITINHQALEQLHYVTELTELIRAKSSPNPAGIKNSTEFVSFFPDFVWIVRDFMLELKL 187

Query: 739  DGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPTQRKKXXXXX 918
            +GE IT+D+YLEN+LKL  G   + +  N  R CIR FFP +KCF+FDRPT  K+     
Sbjct: 188  NGEDITSDDYLENALKLIPGDKPRMQASNSCRECIRLFFPNRKCFVFDRPTHDKELLQKL 247

Query: 919  XXXXXXXXS-EFVQQAAEFCSYIFLNSKTKLFQEASRSLG 1035
                      +F +    F SYIF  +K K  +E  +  G
Sbjct: 248  DSITEDQLDPKFQEVTKAFVSYIFTYAKIKTLKEGIKVTG 287


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,368,440
Number of extensions: 980461
Number of successful extensions: 3554
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 3517
Number of HSP's successfully gapped: 20
Length of query: 362
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 259
Effective length of database: 12,523,851
Effective search space: 3243677409
Effective search space used: 3243677409
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007745
         (1086 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002044.2| interferon-induced guanylate-binding protein 1 ...   455   e-128
Alignment   gi|NP_060754.2| guanylate-binding protein 3 [Homo sapiens].          451   e-127
Alignment   gi|NP_004111.2| interferon-induced guanylate-binding protein 2 ...   417   e-117
Alignment   gi|NP_001127958.1| guanylate-binding protein 5 [Homo sapiens].       379   e-105
Alignment   gi|NP_443174.1| guanylate-binding protein 5 [Homo sapiens].          379   e-105
Alignment   gi|NP_997281.2| guanylate-binding protein 7 [Homo sapiens].          377   e-104
Alignment   gi|NP_940862.2| guanylate-binding protein 6 [Homo sapiens].          363   e-100
Alignment   gi|NP_443173.2| guanylate-binding protein 4 [Homo sapiens].          354   7e-98
Alignment   gi|NP_001121185.1| atlastin-1 isoform b [Homo sapiens].               57   4e-08
Alignment   gi|NP_853629.2| atlastin-1 isoform b [Homo sapiens].                  57   4e-08

>ref|NP_002044.2| interferon-induced guanylate-binding protein 1 [Homo sapiens].
          Length = 592

 Score =  455 bits (1171), Expect = e-128
 Identities = 225/291 (77%), Positives = 242/291 (83%), Gaps = 3/291 (1%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS++HM  P CLIEN NGRL  NP+ALK+LSAI QP+VVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MASEIHMTGPMCLIENTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            K KGFSLGSTVQSHTKGIWMWCVPHPKK  H LVLLDTEGLGDVEKGDNQNDSWIFALA+
Sbjct: 61   KKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDEG---IEDSADFVSFFPDFVW 705
            LLSSTFVYNS+GTINQQAMDQL+YVTELT RIR+KS PDE    +EDSADFVSFFPDFVW
Sbjct: 121  LLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVW 180

Query: 706  TLRDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDR 885
            TLRDFSLDLE DG+ +T DEYL  SLKLKKGTSQKD+ FNLPRLCIRKFFPKKKCF+FDR
Sbjct: 181  TLRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDR 240

Query: 886  PTQRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
            P  R+K              EFVQQ A+FCSYIF NSKTK      +  GP
Sbjct: 241  PVHRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIQVNGP 291


>ref|NP_060754.2| guanylate-binding protein 3 [Homo sapiens].
          Length = 595

 Score =  451 bits (1161), Expect = e-127
 Identities = 223/289 (77%), Positives = 240/289 (83%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MA ++HM  P CLIEN NG L  NP+ALK+LSAI QP+VVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MAPEIHMTGPMCLIENTNGELVANPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFSLGSTV+SHTKGIWMWCVPHPKK EHTLVLLDTEGLGDV+KGDNQNDSWIF LA+
Sbjct: 61   KNKGFSLGSTVKSHTKGIWMWCVPHPKKPEHTLVLLDTEGLGDVKKGDNQNDSWIFTLAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPDEG-IEDSADFVSFFPDFVWTL 711
            LLSST VYNSMGTINQQAMDQL+YVTELT RIR+KS PDE   EDSADFVSFFPDFVWTL
Sbjct: 121  LLSSTLVYNSMGTINQQAMDQLYYVTELTHRIRSKSSPDENENEDSADFVSFFPDFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDFSLDLE DG+ +T DEYLE SLKL +GTSQKDKNFNLPRLCIRKFFPKKKCF+FD P 
Sbjct: 181  RDFSLDLEADGQPLTPDEYLEYSLKLTQGTSQKDKNFNLPRLCIRKFFPKKKCFVFDLPI 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             R+K              EFVQQ A+FCSYIF NSKTK      +  GP
Sbjct: 241  HRRKLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLSGGIKVNGP 289


>ref|NP_004111.2| interferon-induced guanylate-binding protein 2 [Homo sapiens].
          Length = 591

 Score =  417 bits (1072), Expect = e-117
 Identities = 204/289 (70%), Positives = 234/289 (80%), Gaps = 1/289 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MA ++++P P  LI+N  G+L VNP+ALK+LSAI QP+VVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MAPEINLPGPMSLIDNTKGQLVVNPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            K  GFSLGSTV+SHTKGIWMWCVPHPKK EHTLVLLDTEGLGD+EKGDN+NDSWIFALAI
Sbjct: 61   KKNGFSLGSTVKSHTKGIWMWCVPHPKKPEHTLVLLDTEGLGDIEKGDNENDSWIFALAI 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEP-DEGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYNSMGTINQQAMDQLHYVTELT+RI+A S P +  ++DSADFVSFFP FVWTL
Sbjct: 121  LLSSTFVYNSMGTINQQAMDQLHYVTELTDRIKANSSPGNNSVDDSADFVSFFPAFVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDF+L+LE DGE ITAD+YLE SLKL+KGT +K K+FN PRLCIRKFFPK+KCF+FD P 
Sbjct: 181  RDFTLELEVDGEPITADDYLELSLKLRKGTDKKSKSFNDPRLCIRKFFPKRKCFVFDWPA 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQEASRSLGP 1038
             +K               +F++Q AEFCSYI  +S  K         GP
Sbjct: 241  PKKYLAHLEQLKEEELNPDFIEQVAEFCSYILSHSNVKTLSGGIPVNGP 289


>ref|NP_001127958.1| guanylate-binding protein 5 [Homo sapiens].
          Length = 586

 Score =  379 bits (973), Expect = e-105
 Identities = 187/278 (67%), Positives = 220/278 (79%), Gaps = 1/278 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MA ++HM +P CLIEN N +L VN +AL++LSAI QP+VVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MALEIHMSDPMCLIENFNEQLKVNQEALEILSAITQPVVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFS+ STVQSHTKGIW+WCVPHP    HTLVLLDTEGLGDVEK DN+ND  IFALA+
Sbjct: 61   KNKGFSVASTVQSHTKGIWIWCVPHPNWPNHTLVLLDTEGLGDVEKADNKNDIQIFALAL 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYN++  I+Q A+D LH VTELT+ ++A++ PD + +ED AD  SFFPD VWTL
Sbjct: 121  LLSSTFVYNTVNKIDQGAIDLLHNVTELTDLLKARNSPDLDRVEDPADSASFFPDLVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDF L LE DG+ +T DEYLENSL+ K+G+ Q+ +NFNLPRLCI+KFFPKKKCFIFD P 
Sbjct: 181  RDFCLGLEIDGQLVTPDEYLENSLRPKQGSDQRVQNFNLPRLCIQKFFPKKKCFIFDLPA 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTK 1005
             +KK              EFVQQ  EFCSYIF +S TK
Sbjct: 241  HQKKLAQLETLPDDELEPEFVQQVTEFCSYIFSHSMTK 278


>ref|NP_443174.1| guanylate-binding protein 5 [Homo sapiens].
          Length = 586

 Score =  379 bits (973), Expect = e-105
 Identities = 187/278 (67%), Positives = 220/278 (79%), Gaps = 1/278 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MA ++HM +P CLIEN N +L VN +AL++LSAI QP+VVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MALEIHMSDPMCLIENFNEQLKVNQEALEILSAITQPVVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGFS+ STVQSHTKGIW+WCVPHP    HTLVLLDTEGLGDVEK DN+ND  IFALA+
Sbjct: 61   KNKGFSVASTVQSHTKGIWIWCVPHPNWPNHTLVLLDTEGLGDVEKADNKNDIQIFALAL 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEPD-EGIEDSADFVSFFPDFVWTL 711
            LLSSTFVYN++  I+Q A+D LH VTELT+ ++A++ PD + +ED AD  SFFPD VWTL
Sbjct: 121  LLSSTFVYNTVNKIDQGAIDLLHNVTELTDLLKARNSPDLDRVEDPADSASFFPDLVWTL 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDF L LE DG+ +T DEYLENSL+ K+G+ Q+ +NFNLPRLCI+KFFPKKKCFIFD P 
Sbjct: 181  RDFCLGLEIDGQLVTPDEYLENSLRPKQGSDQRVQNFNLPRLCIQKFFPKKKCFIFDLPA 240

Query: 892  QRKKXXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTK 1005
             +KK              EFVQQ  EFCSYIF +S TK
Sbjct: 241  HQKKLAQLETLPDDELEPEFVQQVTEFCSYIFSHSMTK 278


>ref|NP_997281.2| guanylate-binding protein 7 [Homo sapiens].
          Length = 638

 Score =  377 bits (968), Expect = e-104
 Identities = 189/284 (66%), Positives = 222/284 (78%), Gaps = 3/284 (1%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            MAS++HMP P CL EN  G L VN +AL++LSAI QP+VVVAIVGLYRTGKSYLMNKLAG
Sbjct: 1    MASEIHMPGPVCLTENTKGHLVVNSEALEILSAITQPVVVVAIVGLYRTGKSYLMNKLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            KNKGF LG TV+S TKGIWMWCVPHP K  HTL+LLDTEGLGD+EK D ++DSWIFALA+
Sbjct: 61   KNKGFPLGCTVKSETKGIWMWCVPHPSKPNHTLILLDTEGLGDMEKSDPKSDSWIFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKS--EPDEGIEDSADFVSFFPDFVWT 708
            LLSS+FVYNSMGTIN QA++QLHYVTELTE IRAKS   PDE +EDS++FVSFFPDF+WT
Sbjct: 121  LLSSSFVYNSMGTINHQALEQLHYVTELTELIRAKSCPRPDE-VEDSSEFVSFFPDFIWT 179

Query: 709  LRDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
            +RDF+L+L+ DG  IT DEYLEN+LKL  G + + +N N PR  IR FFPK+KCF+FDRP
Sbjct: 180  VRDFTLELKLDGHPITEDEYLENALKLISGKNPQIQNSNKPREWIRHFFPKQKCFVFDRP 239

Query: 889  TQRKK-XXXXXXXXXXXXXSEFVQQAAEFCSYIFLNSKTKLFQE 1017
               KK              S F  Q+  FCSYIF ++KTK  +E
Sbjct: 240  INDKKLLLHVEEVREDQLDSNFQMQSENFCSYIFTHAKTKTLRE 283


>ref|NP_940862.2| guanylate-binding protein 6 [Homo sapiens].
          Length = 633

 Score =  363 bits (931), Expect = e-100
 Identities = 180/283 (63%), Positives = 216/283 (76%), Gaps = 2/283 (0%)
 Frame = +1

Query: 175  MASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNKLAG 354
            M S   M  P CL+EN N +L VN +A+++L  I QP+VVVAIVGLYRTGKSYLMN LAG
Sbjct: 1    MESGPKMLAPVCLVENNNEQLLVNQQAIQILEKISQPVVVVAIVGLYRTGKSYLMNHLAG 60

Query: 355  KNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAI 534
            +N GF LGSTVQS TKGIWMWCVPHP K  HTLVLLDTEGLGDVEKGD +NDSWIFALA+
Sbjct: 61   QNHGFPLGSTVQSETKGIWMWCVPHPSKPNHTLVLLDTEGLGDVEKGDPKNDSWIFALAV 120

Query: 535  LLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKSEP-DEGIEDSADFVSFFPDFVWTL 711
            LL STFVYNSM TIN QA++QLHYVTELTE I+AKS P  +G+EDS +FVSFFPDF+WT+
Sbjct: 121  LLCSTFVYNSMSTINHQALEQLHYVTELTELIKAKSSPRPDGVEDSTEFVSFFPDFLWTV 180

Query: 712  RDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRPT 891
            RDF+L+L+ +G  IT DEYLEN+LKL +G + + +  N PR CIR+FFPK+KCF+FDRPT
Sbjct: 181  RDFTLELKLNGHPITEDEYLENALKLIQGNNPRVQTSNFPRECIRRFFPKRKCFVFDRPT 240

Query: 892  QRKKXXXXXXXXXXXXXS-EFVQQAAEFCSYIFLNSKTKLFQE 1017
              K                +F +Q   FCSYIF +++TK  +E
Sbjct: 241  NDKDLLANIEKVSEKQLDPKFQEQTNIFCSYIFTHARTKTLRE 283


>ref|NP_443173.2| guanylate-binding protein 4 [Homo sapiens].
          Length = 640

 Score =  354 bits (909), Expect = 7e-98
 Identities = 181/287 (63%), Positives = 214/287 (74%), Gaps = 3/287 (1%)
 Frame = +1

Query: 166  PGDMASKVHMPEPQCLIENINGRLAVNPKALKLLSAIKQPLVVVAIVGLYRTGKSYLMNK 345
            PG   S+  M  P CL+EN   +L VN KAL++L  I QP+VVVAIVGLYRTGKSYLMN+
Sbjct: 13   PGYPESESIMMAPICLVENQEEQLTVNSKALEILDKISQPVVVVAIVGLYRTGKSYLMNR 72

Query: 346  LAGKNKGFSLGSTVQSHTKGIWMWCVPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFA 525
            LAGK  GF LGSTVQS TKGIWMWCVPH  K  HTLVLLDTEGLGDVEK + +NDSWIFA
Sbjct: 73   LAGKRNGFPLGSTVQSETKGIWMWCVPHLSKPNHTLVLLDTEGLGDVEKSNPKNDSWIFA 132

Query: 526  LAILLSSTFVYNSMGTINQQAMDQLHYVTELTERIRAKS--EPDEGIEDSADFVSFFPDF 699
            LA+LLSS+FVYNS+ TIN QA++QLHYVTEL E IRAKS   PDE  EDS++F SFFPDF
Sbjct: 133  LAVLLSSSFVYNSVSTINHQALEQLHYVTELAELIRAKSCPRPDEA-EDSSEFASFFPDF 191

Query: 700  VWTLRDFSLDLETDGESITADEYLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIF 879
            +WT+RDF+L+L+ DG  IT DEYLEN+LKL  G + K +N N+PR CIR FF K+KCF+F
Sbjct: 192  IWTVRDFTLELKLDGNPITEDEYLENALKLIPGKNPKIQNSNMPRECIRHFFRKRKCFVF 251

Query: 880  DRPTQRKKXXXXXXXXXXXXXS-EFVQQAAEFCSYIFLNSKTKLFQE 1017
            DRPT  K+                F+ Q+  FCSYIF ++KTK  +E
Sbjct: 252  DRPTNDKQYLNHMDEVPEENLERHFLMQSDNFCSYIFTHAKTKTLRE 298


>ref|NP_001121185.1| atlastin-1 isoform b [Homo sapiens].
          Length = 553

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
 Frame = +1

Query: 286 LVVVAIVGLYRTGKSYLMNKL-------------AGKNK---GFSLGSTVQSHTKGIWMW 417
           +V V++ G +R GKS+LM+ +                N+   GFS     +  T GI +W
Sbjct: 67  VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIW 126

Query: 418 C----VPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYNSMGTINQQ 585
                +  P  ++  ++L+DT+G  D  +   ++ + +FAL+ ++SS  VYN    + + 
Sbjct: 127 SEIFLINKPDGKKVAVLLMDTQGTFD-SQSTLRDSATVFALSTMISSIQVYNLSQNVQE- 184

Query: 586 AMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTLRDFSLDLETDGESITADE 765
             D L ++   TE  R   E          F+  F   ++ +RD+S   E    +    +
Sbjct: 185 --DDLQHLQLFTEYGRLAME--------ETFLKPFQSLIFLVRDWSFPYEFSYGADGGAK 234

Query: 766 YLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
           +LE  LK+     ++ +N    R  I   F    CF+   P
Sbjct: 235 FLEKRLKVSGNQHEELQNV---RKHIHSCFTNISCFLLPHP 272


>ref|NP_853629.2| atlastin-1 isoform b [Homo sapiens].
          Length = 553

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
 Frame = +1

Query: 286 LVVVAIVGLYRTGKSYLMNKL-------------AGKNK---GFSLGSTVQSHTKGIWMW 417
           +V V++ G +R GKS+LM+ +                N+   GFS     +  T GI +W
Sbjct: 67  VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIW 126

Query: 418 C----VPHPKKREHTLVLLDTEGLGDVEKGDNQNDSWIFALAILLSSTFVYNSMGTINQQ 585
                +  P  ++  ++L+DT+G  D  +   ++ + +FAL+ ++SS  VYN    + + 
Sbjct: 127 SEIFLINKPDGKKVAVLLMDTQGTFD-SQSTLRDSATVFALSTMISSIQVYNLSQNVQE- 184

Query: 586 AMDQLHYVTELTERIRAKSEPDEGIEDSADFVSFFPDFVWTLRDFSLDLETDGESITADE 765
             D L ++   TE  R   E          F+  F   ++ +RD+S   E    +    +
Sbjct: 185 --DDLQHLQLFTEYGRLAME--------ETFLKPFQSLIFLVRDWSFPYEFSYGADGGAK 234

Query: 766 YLENSLKLKKGTSQKDKNFNLPRLCIRKFFPKKKCFIFDRP 888
           +LE  LK+     ++ +N    R  I   F    CF+   P
Sbjct: 235 FLEKRLKVSGNQHEELQNV---RKHIHSCFTNISCFLLPHP 272


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,897,864
Number of extensions: 1165024
Number of successful extensions: 4245
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4220
Number of HSP's successfully gapped: 14
Length of query: 362
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 258
Effective length of database: 14,868,908
Effective search space: 3836178264
Effective search space used: 3836178264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007745
         (1086 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                         472   e-130

>Sscrofa_Chr04 
||          Length = 143465943

 Score =  472 bits (238), Expect = e-130
 Identities = 245/246 (99%), Gaps = 1/246 (0%)
 Strand = Plus / Plus

                                                                             
Query: 796       ggtaccagtcaaaaagataaaaattttaacctgcctcgactctgtatccggaagttcttc 855
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139660307 ggtaccagtcaaaaagataaaaattttaacctgcctcgactctgtatccggaagttcttc 139660366

                                                                             
Query: 856       cccaagaagaaatgctttatctttgatcggcccactcagaggaagaagctgggccagctt 915
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139660367 cccaagaagaaatgctttatctttgatcggcccactcagaggaagaagctgggccagctt 139660426

                                                                             
Query: 916       gaggatctgggtgacgatgagctggactcagaatttgtgcaacaagctgcagagttctgt 975
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139660427 gaggatctgggtgacgatgagctggactcagaatttgtgcaacaagctgcagagttctgt 139660486

                                                                             
Query: 976       tcctacatcttcttaaattccaaaacg-aaactctttcaggaggcatcaaggtcactggg 1034
                 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 139660487 tcctacatcttcttaaattccaaaacgaaaactctttcaggaggcatcaaggtcactggg 139660546

                       
Query: 1035      ccccgt 1040
                 ||||||
Sbjct: 139660547 ccccgt 139660552



 Score =  402 bits (203), Expect = e-109
 Identities = 203/203 (100%)
 Strand = Plus / Plus

                                                                             
Query: 163       agacccggggacatggcctcaaaggtgcacatgcccgaaccacagtgcctcattgagaac 222
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139653824 agacccggggacatggcctcaaaggtgcacatgcccgaaccacagtgcctcattgagaac 139653883

                                                                             
Query: 223       atcaatgggcgactggcggtgaacccgaaagcgctgaagctcctgtctgccatcaagcag 282
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139653884 atcaatgggcgactggcggtgaacccgaaagcgctgaagctcctgtctgccatcaagcag 139653943

                                                                             
Query: 283       cccctggtggtggtggctatcgtgggcctgtaccgcacaggcaaatcctacctgatgaac 342
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139653944 cccctggtggtggtggctatcgtgggcctgtaccgcacaggcaaatcctacctgatgaac 139654003

                                        
Query: 343       aagctggctgggaagaacaaggg 365
                 |||||||||||||||||||||||
Sbjct: 139654004 aagctggctgggaagaacaaggg 139654026



 Score =  391 bits (197), Expect = e-106
 Identities = 197/197 (100%)
 Strand = Plus / Plus

                                                                             
Query: 603       ctacgtgaccgagctgacagagagaatcagggcaaagtcggaacctgatgaagggattga 662
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139659504 ctacgtgaccgagctgacagagagaatcagggcaaagtcggaacctgatgaagggattga 139659563

                                                                             
Query: 663       ggactcggctgactttgtgagcttctttccagactttgtgtggacgctgcgggacttctc 722
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139659564 ggactcggctgactttgtgagcttctttccagactttgtgtggacgctgcgggacttctc 139659623

                                                                             
Query: 723       cctggacttggaaacagatggagaatccatcacagcagacgagtacctggagaactcact 782
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139659624 cctggacttggaaacagatggagaatccatcacagcagacgagtacctggagaactcact 139659683

                                  
Query: 783       caagcttaagaagggta 799
                 |||||||||||||||||
Sbjct: 139659684 caagcttaagaagggta 139659700



 Score =  369 bits (186), Expect = 2e-99
 Identities = 192/194 (98%)
 Strand = Plus / Minus

                                                                             
Query: 172       gacatggcctcaaaggtgcacatgcccgaaccacagtgcctcattgagaacatcaatggg 231
                 ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139421601 gacatggcctcaggggtgcacatgcccgaaccacagtgcctcattgagaacatcaatggg 139421542

                                                                             
Query: 232       cgactggcggtgaacccgaaagcgctgaagctcctgtctgccatcaagcagcccctggtg 291
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139421541 cgactggcggtgaacccgaaagcgctgaagctcctgtctgccatcaagcagcccctggtg 139421482

                                                                             
Query: 292       gtggtggctatcgtgggcctgtaccgcacaggcaaatcctacctgatgaacaagctggct 351
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139421481 gtggtggctatcgtgggcctgtaccgcacaggcaaatcctacctgatgaacaagctggct 139421422

                               
Query: 352       gggaagaacaaggg 365
                 ||||||||||||||
Sbjct: 139421421 gggaagaacaaggg 139421408



 Score =  337 bits (170), Expect = 8e-90
 Identities = 188/194 (96%)
 Strand = Plus / Plus

                                                                             
Query: 172       gacatggcctcaaaggtgcacatgcccgaaccacagtgcctcattgagaacatcaatggg 231
                 ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139504365 gacatggcctcaggggtgcacatgcccgaaccacagtgcctcattgagaacatcaatggg 139504424

                                                                             
Query: 232       cgactggcggtgaacccgaaagcgctgaagctcctgtctgccatcaagcagcccctggtg 291
                 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139504425 cgactggtggtgagcccgaaagcgctgaagctcctgtctgccatcaagcagcccctggtg 139504484

                                                                             
Query: 292       gtggtggctatcgtgggcctgtaccgcacaggcaaatcctacctgatgaacaagctggct 351
                 |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 139504485 gtggtggctatcgtgggcccttaccgcacaggcaaatcctacctgatgaacaagctggct 139504544

                               
Query: 352       gggaagaacaaggg 365
                 ||||||||||||||
Sbjct: 139504545 gggaagaacaaggg 139504558



 Score =  315 bits (159), Expect = 3e-83
 Identities = 159/159 (100%)
 Strand = Plus / Plus

                                                                             
Query: 6         attacagaggttgctttgcttctgactcggctctagagggaatcagtaaagctcctcgac 65
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139651545 attacagaggttgctttgcttctgactcggctctagagggaatcagtaaagctcctcgac 139651604

                                                                             
Query: 66        actggctgtgtggactaacagtcaaaccctcccgtgaaacagagaagttacagagaagtc 125
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139651605 actggctgtgtggactaacagtcaaaccctcccgtgaaacagagaagttacagagaagtc 139651664

                                                        
Query: 126       cactcgtctcactgagaagaggaaagaactctcaatgag 164
                 |||||||||||||||||||||||||||||||||||||||
Sbjct: 139651665 cactcgtctcactgagaagaggaaagaactctcaatgag 139651703



 Score =  258 bits (130), Expect = 6e-66
 Identities = 130/130 (100%)
 Strand = Plus / Plus

                                                                             
Query: 364       ggcttctctctgggctccacggtgcagtctcacacaaagggcatctggatgtggtgtgtg 423
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139656728 ggcttctctctgggctccacggtgcagtctcacacaaagggcatctggatgtggtgtgtg 139656787

                                                                             
Query: 424       cctcaccccaagaagcgagaacacaccctggttctgctcgacaccgagggcctgggggat 483
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139656788 cctcaccccaagaagcgagaacacaccctggttctgctcgacaccgagggcctgggggat 139656847

                           
Query: 484       gttgagaagg 493
                 ||||||||||
Sbjct: 139656848 gttgagaagg 139656857



 Score =  222 bits (112), Expect = 3e-55
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                             
Query: 491       agggtgacaaccagaacgactcctggatcttcgccctggcaattctcctgagcagcacct 550
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139658537 agggtgacaaccagaacgactcctggatcttcgccctggcaattctcctgagcagcacct 139658596

                                                                     
Query: 551       tcgtctacaacagcatggggaccattaaccagcaggccatggaccagctaca 602
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139658597 tcgtctacaacagcatggggaccattaaccagcaggccatggaccagctaca 139658648



 Score =  202 bits (102), Expect = 3e-49
 Identities = 123/130 (94%)
 Strand = Plus / Plus

                                                                             
Query: 364       ggcttctctctgggctccacggtgcagtctcacacaaagggcatctggatgtggtgtgtg 423
                 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 139505070 ggcttctctctgggctccacggtgcagtctcacacgaagggcatctggatgtggtgtgtg 139505129

                                                                             
Query: 424       cctcaccccaagaagcgagaacacaccctggttctgctcgacaccgagggcctgggggat 483
                 |||||||||| ||| | ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 139505130 cctcaccccaggaatccagaccacaccctggttctgcttgacaccgagggcctgggggat 139505189

                           
Query: 484       gttgagaagg 493
                 || |||||||
Sbjct: 139505190 gtagagaagg 139505199



 Score =  202 bits (102), Expect = 3e-49
 Identities = 123/130 (94%)
 Strand = Plus / Minus

                                                                             
Query: 364       ggcttctctctgggctccacggtgcagtctcacacaaagggcatctggatgtggtgtgtg 423
                 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 139625847 ggcttctctctgggctccacggtgcagtctcacacgaagggcatctggatgtggtgtgtg 139625788

                                                                             
Query: 424       cctcaccccaagaagcgagaacacaccctggttctgctcgacaccgagggcctgggggat 483
                 |||||||||| ||| | ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 139625787 cctcaccccaggaatccagaccacaccctggttctgcttgacaccgagggcctgggggat 139625728

                           
Query: 484       gttgagaagg 493
                 || |||||||
Sbjct: 139625727 gtagagaagg 139625718



 Score =  170 bits (86), Expect = 1e-39
 Identities = 119/130 (91%)
 Strand = Plus / Minus

                                                                             
Query: 364       ggcttctctctgggctccacggtgcagtctcacacaaagggcatctggatgtggtgtgtg 423
                 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 139420594 ggcttctctgtgggctccacggtgcagtctcacacaaagggcatctggatgtggtgcgtg 139420535

                                                                             
Query: 424       cctcaccccaagaagcgagaacacaccctggttctgctcgacaccgagggcctgggggat 483
                 |||||||||| ||||| ||| ||||||||||| || || ||||||||||| || ||||||
Sbjct: 139420534 cctcaccccaggaagccagaccacaccctggtccttctggacaccgagggactcggggat 139420475

                           
Query: 484       gttgagaagg 493
                 || |||||||
Sbjct: 139420474 gtggagaagg 139420465



 Score =  157 bits (79), Expect = 2e-35
 Identities = 97/103 (94%)
 Strand = Plus / Minus

                                                                             
Query: 263       tcctgtctgccatcaagcagcccctggtggtggtggctatcgtgggcctgtaccgcacag 322
                 ||||||||||||||| ||||||  |||||||||||| |||||||||||  ||||||||||
Sbjct: 139626443 tcctgtctgccatcacgcagcctgtggtggtggtggttatcgtgggcccctaccgcacag 139626384

                                                            
Query: 323       gcaaatcctacctgatgaacaagctggctgggaagaacaaggg 365
                 |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139626383 gcaaatcctacctgatgaacaagctggctgggaagaacaaggg 139626341



 Score =  131 bits (66), Expect = 9e-28
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                             
Query: 491       agggtgacaaccagaacgactcctggatcttcgccctggcaattctcctgagcagcacct 550
                 |||| ||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||| 
Sbjct: 139506110 agggagacaaccagaatgactcctggctctttgccctggcagttctcctgagcagcaccc 139506169

                                                               
Query: 551       tcgtctacaacagcatggggaccattaaccagcaggccatggacca 596
                 |  | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 139506170 ttatatacaacagcatggggaccatcaaccagcaggccatggacca 139506215



 Score =  131 bits (66), Expect = 9e-28
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                             
Query: 491       agggtgacaaccagaacgactcctggatcttcgccctggcaattctcctgagcagcacct 550
                 |||| ||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||| 
Sbjct: 139559452 agggagacaaccagaatgactcctggctctttgccctggcagttctcctgagcagcaccc 139559511

                                                               
Query: 551       tcgtctacaacagcatggggaccattaaccagcaggccatggacca 596
                 |  | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 139559512 ttatatacaacagcatggggaccatcaaccagcaggccatggacca 139559557



 Score =  115 bits (58), Expect = 5e-23
 Identities = 94/106 (88%)
 Strand = Plus / Minus

                                                                             
Query: 491       agggtgacaaccagaacgactcctggatcttcgccctggcaattctcctgagcagcacct 550
                 |||| ||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||| 
Sbjct: 139624806 agggagacaaccagaatgactcctggctctttgccctggcagttctcctgagcagcaccc 139624747

                                                               
Query: 551       tcgtctacaacagcatggggaccattaaccagcaggccatggacca 596
                 |  | ||||||||  |||||||||| ||||||||||||||||||||
Sbjct: 139624746 ttatatacaacagtgtggggaccatcaaccagcaggccatggacca 139624701



 Score =  105 bits (53), Expect = 5e-20
 Identities = 107/125 (85%)
 Strand = Plus / Minus

                                                                             
Query: 664       gactcggctgactttgtgagcttctttccagactttgtgtggacgctgcgggacttctcc 723
                 ||||| ||||||||||| |||||||||||||||||||||||||| ||| | || ||||||
Sbjct: 139621702 gactcagctgactttgtaagcttctttccagactttgtgtggaccctgagagatttctcc 139621643

                                                                             
Query: 724       ctggacttggaaacagatggagaatccatcacagcagacgagtacctggagaactcactc 783
                 |||||| |  || || |||| ||| |||||||  | ||||||||||||||||| ||||| 
Sbjct: 139621642 ctggacctacaagcaaatggggaacccatcactcctgacgagtacctggagaattcactg 139621583

                      
Query: 784       aagct 788
                 |||||
Sbjct: 139621582 aagct 139621578



 Score =  103 bits (52), Expect = 2e-19
 Identities = 103/120 (85%)
 Strand = Plus / Plus

                                                                             
Query: 374       tgggctccacggtgcagtctcacacaaagggcatctggatgtggtgtgtgcctcacccca 433
                 |||| ||||| ||||||||| | || |||||||||||||||||||||||||| |||||| 
Sbjct: 139411344 tggggtccacagtgcagtctgaaaccaagggcatctggatgtggtgtgtgccccacccct 139411403

                                                                             
Query: 434       agaagcgagaacacaccctggttctgctcgacaccgagggcctgggggatgttgagaagg 493
                   |||| ||| | ||||||||| || || ||||||||||||||||| ||||| |||||||
Sbjct: 139411404 ccaagccagaccgcaccctggtccttctggacaccgagggcctgggcgatgtggagaagg 139411463



 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 104/122 (85%)
 Strand = Plus / Plus

                                                                             
Query: 372       tctgggctccacggtgcagtctcacacaaagggcatctggatgtggtgtgtgcctcaccc 431
                 |||||| ||||| ||||||||| | || |||||||||||||||||||||||||| |||||
Sbjct: 139280726 tctggggtccacagtgcagtctgaaaccaagggcatctggatgtggtgtgtgccccaccc 139280785

                                                                             
Query: 432       caagaagcgagaacacaccctggttctgctcgacaccgagggcctgggggatgttgagaa 491
                 |   |||| |||   ||||||||| || || ||||||||||||||||| ||||| |||||
Sbjct: 139280786 ctccaagccagactgcaccctggtccttctggacaccgagggcctgggcgatgtggagaa 139280845

                   
Query: 492       gg 493
                 ||
Sbjct: 139280846 gg 139280847



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                             
Query: 280       cagcccctggtggtggtggctatcgtgggcctgtaccgcacaggcaaatcctacctgatg 339
                 |||||| ||||||||||||| || || || ||||| ||||||||||||||||||||||||
Sbjct: 139280468 cagcccgtggtggtggtggccattgtaggactgtatcgcacaggcaaatcctacctgatg 139280527

                    
Query: 340       aac 342
                 |||
Sbjct: 139280528 aac 139280530



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                             
Query: 280       cagcccctggtggtggtggctatcgtgggcctgtaccgcacaggcaaatcctacctgatg 339
                 |||||| ||||||||||||| || || || ||||| ||||||||||||||||||||||||
Sbjct: 139410005 cagcccgtggtggtggtggccattgtaggactgtatcgcacaggcaaatcctacctgatg 139410064

                    
Query: 340       aac 342
                 |||
Sbjct: 139410065 aac 139410067



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 82/97 (84%)
 Strand = Plus / Plus

                                                                             
Query: 503       agaacgactcctggatcttcgccctggcaattctcctgagcagcaccttcgtctacaaca 562
                 |||||||||| |||||||||||||||||  | || |||||||||  ||||||||||||||
Sbjct: 139285267 agaacgactcgtggatcttcgccctggccgtgcttctgagcagcgtcttcgtctacaaca 139285326

                                                      
Query: 563       gcatggggaccattaaccagcaggccatggaccagct 599
                 ||| |   ||||| ||||| |||||| |||| |||||
Sbjct: 139285327 gcacgaacaccatcaaccaccaggccctggagcagct 139285363



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 103/125 (82%)
 Strand = Plus / Plus

                                                                             
Query: 664       gactcggctgactttgtgagcttctttccagactttgtgtggacgctgcgggacttctcc 723
                 ||||| ||||||||||| |||||||||||||| ||||||||||| ||| | || ||||||
Sbjct: 139507177 gactcagctgactttgtaagcttctttccagattttgtgtggactctgagagatttctcc 139507236

                                                                             
Query: 724       ctggacttggaaacagatggagaatccatcacagcagacgagtacctggagaactcactc 783
                 || ||  ||||| || |   |||| ||||||  || || |||||||||||||| ||||| 
Sbjct: 139507237 ctagagctggaagcaaactcagaacccatcattgctgatgagtacctggagaattcactg 139507296

                      
Query: 784       aagct 788
                 |||||
Sbjct: 139507297 aagct 139507301



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 103/125 (82%)
 Strand = Plus / Plus

                                                                             
Query: 664       gactcggctgactttgtgagcttctttccagactttgtgtggacgctgcgggacttctcc 723
                 ||||| ||||||||||| |||||||||||||| ||||||||||| ||| | || ||||||
Sbjct: 139560519 gactcagctgactttgtaagcttctttccagattttgtgtggactctgagagatttctcc 139560578

                                                                             
Query: 724       ctggacttggaaacagatggagaatccatcacagcagacgagtacctggagaactcactc 783
                 || ||  ||||| || |   |||| ||||||  || || |||||||||||||| ||||| 
Sbjct: 139560579 ctagagctggaagcaaactcagaacccatcattgctgatgagtacctggagaattcactg 139560638

                      
Query: 784       aagct 788
                 |||||
Sbjct: 139560639 aagct 139560643



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 82/97 (84%)
 Strand = Plus / Plus

                                                                             
Query: 503       agaacgactcctggatcttcgccctggcaattctcctgagcagcaccttcgtctacaaca 562
                 |||||||||| |||||||| ||||||||  | || |||||||||  ||||||||||||||
Sbjct: 139591910 agaacgactcgtggatctttgccctggccgtgcttctgagcagcgtcttcgtctacaaca 139591969

                                                      
Query: 563       gcatggggaccattaaccagcaggccatggaccagct 599
                 |||||   ||||| ||||| |||||| |||| |||||
Sbjct: 139591970 gcatgaacaccatcaaccaccaggccctggagcagct 139592006



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 47/49 (95%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                                  
Query: 1039      gtctggagaccctggtgctgaccttttgtc-acaccatcagcagtgggg 1086
                 ||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 139661656 gtctggagaccctggtgctgacc-tttgtcaacaccatcagcagtgggg 139661703



 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                             
Query: 503       agaacgactcctggatcttcgccctggcaattctcctgagcagcaccttcgtctacaaca 562
                 |||||||||| |||||||| ||||||||  | || |||||||||  ||||||||||||||
Sbjct: 139472822 agaacgactcatggatctttgccctggccgtgcttctgagcagcgtcttcgtctacaaca 139472763

                    
Query: 563       gca 565
                 |||
Sbjct: 139472762 gca 139472760


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,207,664
Number of extensions: 241
Number of successful extensions: 241
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 26
Length of query: 1086
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1065
Effective length of database: 2,808,413,156
Effective search space: 2990960011140
Effective search space used: 2990960011140
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)