Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007748
(901 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029918.1| coiled-coil-helix-coiled-coil-helix domain-c... 97 1e-20
Alignment gi|NP_001077243.1| coiled-coil-helix-coiled-coil-helix domain-c... 59 8e-09
>ref|NP_001029918.1| coiled-coil-helix-coiled-coil-helix domain-containing protein 2,
mitochondrial [Bos taurus].
Length = 153
Score = 97.4 bits (241), Expect = 1e-20
Identities = 53/102 (51%), Positives = 55/102 (53%)
Frame = +2
Query: 284 QPGLMAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRPDITYXXXXXXXXXXXX 463
QPGLMAQM EPSRPDITY
Sbjct: 52 QPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSSAEPSRPDITYQEPQGTQPAQLQ 111
Query: 464 XXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS 589
CFYEVKQFLECAQ+QGDLKLCEGFSEVLKQCRLANGL+
Sbjct: 112 QNGPCFYEVKQFLECAQSQGDLKLCEGFSEVLKQCRLANGLA 153
>ref|NP_001077243.1| coiled-coil-helix-coiled-coil-helix domain-containing protein 10,
mitochondrial [Bos taurus].
Length = 143
Score = 58.5 bits (140), Expect = 8e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 476 CFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS 589
C YE++QFL+C+ Q DL LCEGFSE LKQC+ +GLS
Sbjct: 103 CAYEIRQFLDCSTTQSDLTLCEGFSEALKQCKYNHGLS 140
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,319,140
Number of extensions: 628296
Number of successful extensions: 2042
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2040
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 198
Effective length of database: 14,306,398
Effective search space: 2832666804
Effective search space used: 2832666804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007748
(901 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536830.2| PREDICTED: similar to Coiled-coil-helix-coiled-... 94 2e-19
Alignment gi|XP_534755.2| PREDICTED: similar to chromosome 22 open readin... 59 6e-09
Alignment gi|XP_851998.1| PREDICTED: similar to transcript expressed duri... 49 5e-06
>ref|XP_536830.2| PREDICTED: similar to Coiled-coil-helix-coiled-coil-helix domain
containing protein 2 (HCV NS2 trans-regulated protein)
(NS2TP) [Canis familiaris].
Length = 152
Score = 94.0 bits (232), Expect = 2e-19
Identities = 51/102 (50%), Positives = 53/102 (51%)
Frame = +2
Query: 284 QPGLMAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRPDITYXXXXXXXXXXXX 463
QPGLMAQM EPSRPDITY
Sbjct: 51 QPGLMAQMATTAAGVAVGSAVGHTIGHAITGGFGGGSNTEPSRPDITYQEPQGTQPAYQQ 110
Query: 464 XXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS 589
C YE+KQFLECAQNQGDLKLCEGFSEVLKQCR ANGL+
Sbjct: 111 QFGPCHYEMKQFLECAQNQGDLKLCEGFSEVLKQCRFANGLA 152
>ref|XP_534755.2| PREDICTED: similar to chromosome 22 open reading frame 16 [Canis
familiaris].
Length = 207
Score = 58.9 bits (141), Expect = 6e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 476 CFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS 589
C YE++QFL+C+ Q DL LCEGFSE LKQC+ +GLS
Sbjct: 167 CAYEIRQFLDCSTTQSDLSLCEGFSEALKQCKYNHGLS 204
>ref|XP_851998.1| PREDICTED: similar to transcript expressed during hematopoiesis 2
[Canis familiaris].
Length = 121
Score = 49.3 bits (116), Expect = 5e-06
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +2
Query: 485 EVKQFLECAQNQGDLKLCEGFSEVLKQCRLANG 583
EV+QFL+C+ Q DL LCEGF E LKQC+ +G
Sbjct: 12 EVRQFLDCSTTQSDLSLCEGFGEALKQCKYDHG 44
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,322,405
Number of extensions: 629756
Number of successful extensions: 2094
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2091
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 198
Effective length of database: 15,474,232
Effective search space: 3063897936
Effective search space used: 3063897936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007748
(901 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133863.1| PREDICTED: coiled-coil-helix-coiled-coil-hel... 100 1e-21
Alignment gi|XP_003124496.1| PREDICTED: coiled-coil-helix-coiled-coil-hel... 100 1e-21
Alignment gi|XP_001929503.1| PREDICTED: coiled-coil-helix-coiled-coil-hel... 59 4e-09
>ref|XP_003133863.1| PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing
protein 2, mitochondrial-like [Sus scrofa].
Length = 153
Score = 100 bits (249), Expect = 1e-21
Identities = 55/102 (53%), Positives = 55/102 (53%)
Frame = +2
Query: 284 QPGLMAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRPDITYXXXXXXXXXXXX 463
QPGLMAQM EPSRPDITY
Sbjct: 52 QPGLMAQMATTVAGVAVGSAVGHTIGHAITGGFGGGSSAEPSRPDITYQEPQGAQPAQQQ 111
Query: 464 XXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS 589
CFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS
Sbjct: 112 QIGPCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS 153
>ref|XP_003124496.1| PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing
protein 2, mitochondrial-like [Sus scrofa].
Length = 153
Score = 100 bits (249), Expect = 1e-21
Identities = 55/102 (53%), Positives = 55/102 (53%)
Frame = +2
Query: 284 QPGLMAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRPDITYXXXXXXXXXXXX 463
QPGLMAQM EPSRPDITY
Sbjct: 52 QPGLMAQMATTAAGVAVGSAVGHTIGHAITGGFGGGSSAEPSRPDITYQEPQGAQPAQQQ 111
Query: 464 XXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS 589
CFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS
Sbjct: 112 QMAPCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS 153
>ref|XP_001929503.1| PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing
protein 10, mitochondrial-like [Sus scrofa].
Length = 142
Score = 58.9 bits (141), Expect = 4e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 476 CFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS 589
C YE++QFL+C+ Q DL LCEGFSE LKQC+ +GLS
Sbjct: 102 CAYEIRQFLDCSTTQSDLSLCEGFSEALKQCKYNHGLS 139
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,714,136
Number of extensions: 420911
Number of successful extensions: 1388
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1383
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,904,026
Effective search space: 1798613252
Effective search space used: 1798613252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007748
(901 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_981505.1| PREDICTED: coiled-coil-helix-coiled-coil-helix ... 84 2e-16
Alignment gi|XP_485502.1| PREDICTED: coiled-coil-helix-coiled-coil-helix ... 84 2e-16
Alignment gi|XP_001472672.1| PREDICTED: coiled-coil-helix-coiled-coil-hel... 84 2e-16
Alignment gi|XP_910245.1| PREDICTED: coiled-coil-helix-coiled-coil-helix ... 84 2e-16
Alignment gi|XP_003086397.1| PREDICTED: coiled-coil-helix-coiled-coil-hel... 84 2e-16
Alignment gi|NP_077128.2| coiled-coil-helix-coiled-coil-helix domain-cont... 84 2e-16
Alignment gi|NP_898911.2| SCAN domain containing 3 [Mus musculus]. 80 3e-15
Alignment gi|NP_001164450.1| chch domain containing protein [Mus musculus]. 79 4e-15
Alignment gi|NP_780538.2| coiled-coil-helix-coiled-coil-helix domain-cont... 60 3e-09
>ref|XP_981505.1| PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing
protein 2, mitochondrial-like [Mus musculus].
Length = 153
Score = 83.6 bits (205), Expect = 2e-16
Identities = 44/101 (43%), Positives = 51/101 (50%)
Frame = +2
Query: 284 QPGLMAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRPDITYXXXXXXXXXXXX 463
QPGLMAQM EP++PDITY
Sbjct: 52 QPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQGAQLQNQQ 111
Query: 464 XXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGL 586
C E+KQFLECAQNQ D+KLCEGF+EVL+QCR+ANGL
Sbjct: 112 SFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152
>ref|XP_485502.1| PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing
protein 2, mitochondrial-like [Mus musculus].
Length = 153
Score = 83.6 bits (205), Expect = 2e-16
Identities = 44/101 (43%), Positives = 51/101 (50%)
Frame = +2
Query: 284 QPGLMAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRPDITYXXXXXXXXXXXX 463
QPGLMAQM EP++PDITY
Sbjct: 52 QPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQGAQLQNQQ 111
Query: 464 XXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGL 586
C E+KQFLECAQNQ D+KLCEGF+EVL+QCR+ANGL
Sbjct: 112 SFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152
>ref|XP_001472672.1| PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing
protein 2, mitochondrial-like [Mus musculus].
Length = 153
Score = 83.6 bits (205), Expect = 2e-16
Identities = 44/101 (43%), Positives = 51/101 (50%)
Frame = +2
Query: 284 QPGLMAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRPDITYXXXXXXXXXXXX 463
QPGLMAQM EP++PDITY
Sbjct: 52 QPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQGAQLQNQQ 111
Query: 464 XXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGL 586
C E+KQFLECAQNQ D+KLCEGF+EVL+QCR+ANGL
Sbjct: 112 SFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152
>ref|XP_910245.1| PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing
protein 2, mitochondrial-like [Mus musculus].
Length = 153
Score = 83.6 bits (205), Expect = 2e-16
Identities = 44/101 (43%), Positives = 51/101 (50%)
Frame = +2
Query: 284 QPGLMAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRPDITYXXXXXXXXXXXX 463
QPGLMAQM EP++PDITY
Sbjct: 52 QPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQGAQLQNQQ 111
Query: 464 XXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGL 586
C E+KQFLECAQNQ D+KLCEGF+EVL+QCR+ANGL
Sbjct: 112 SFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152
>ref|XP_003086397.1| PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing
protein 2, mitochondrial-like [Mus musculus].
Length = 153
Score = 83.6 bits (205), Expect = 2e-16
Identities = 44/101 (43%), Positives = 51/101 (50%)
Frame = +2
Query: 284 QPGLMAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRPDITYXXXXXXXXXXXX 463
QPGLMAQM EP++PDITY
Sbjct: 52 QPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQGAQLQNQQ 111
Query: 464 XXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGL 586
C E+KQFLECAQNQ D+KLCEGF+EVL+QCR+ANGL
Sbjct: 112 SFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152
>ref|NP_077128.2| coiled-coil-helix-coiled-coil-helix domain-containing protein 2,
mitochondrial precursor [Mus musculus].
Length = 153
Score = 83.6 bits (205), Expect = 2e-16
Identities = 44/101 (43%), Positives = 51/101 (50%)
Frame = +2
Query: 284 QPGLMAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRPDITYXXXXXXXXXXXX 463
QPGLMAQM EP++PDITY
Sbjct: 52 QPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQGAQLQNQQ 111
Query: 464 XXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGL 586
C E+KQFLECAQNQ D+KLCEGF+EVL+QCR+ANGL
Sbjct: 112 SFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152
>ref|NP_898911.2| SCAN domain containing 3 [Mus musculus].
Length = 756
Score = 79.7 bits (195), Expect = 3e-15
Identities = 42/99 (42%), Positives = 49/99 (49%)
Frame = +2
Query: 284 QPGLMAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRPDITYXXXXXXXXXXXX 463
QPGLMAQM EP++PDITY
Sbjct: 52 QPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQGAQLQNQQ 111
Query: 464 XXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLAN 580
C E+KQFLECAQNQ D+KLCEGF+EVL+QCR+AN
Sbjct: 112 SFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIAN 150
>ref|NP_001164450.1| chch domain containing protein [Mus musculus].
Length = 161
Score = 79.3 bits (194), Expect = 4e-15
Identities = 36/62 (58%), Positives = 42/62 (67%)
Frame = +2
Query: 401 EPSRPDITYXXXXXXXXXXXXXXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLAN 580
EP++PDITY C E+KQFLECAQNQ D+KLCEGF EVL+QCR+AN
Sbjct: 99 EPAKPDITYQEPQGAQLQNQQSFGPCSLEIKQFLECAQNQSDVKLCEGFKEVLRQCRIAN 158
Query: 581 GL 586
GL
Sbjct: 159 GL 160
>ref|NP_780538.2| coiled-coil-helix-coiled-coil-helix domain-containing protein 10,
mitochondrial [Mus musculus].
Length = 138
Score = 59.7 bits (143), Expect = 3e-09
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2
Query: 476 CFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS 589
C YE+KQFL+C+ Q DL LCEGFSE LKQC+ +GLS
Sbjct: 98 CSYEIKQFLDCSTTQSDLTLCEGFSEALKQCKYNHGLS 135
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,660,804
Number of extensions: 522681
Number of successful extensions: 1839
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1822
Number of HSP's successfully gapped: 9
Length of query: 300
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 199
Effective length of database: 12,583,923
Effective search space: 2504200677
Effective search space used: 2504200677
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007748
(901 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057223.1| coiled-coil-helix-coiled-coil-helix domain-cont... 89 4e-18
Alignment gi|NP_998885.1| coiled-coil-helix-coiled-coil-helix domain-cont... 59 6e-09
>ref|NP_057223.1| coiled-coil-helix-coiled-coil-helix domain-containing protein 2,
mitochondrial precursor [Homo sapiens].
Length = 151
Score = 89.4 bits (220), Expect = 4e-18
Identities = 49/102 (48%), Positives = 54/102 (52%)
Frame = +2
Query: 284 QPGLMAQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSRPDITYXXXXXXXXXXXX 463
QPGLMAQM EP+RPDITY
Sbjct: 52 QPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQ 111
Query: 464 XXXXCFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS 589
C YE+KQFLECAQNQGD+KLCEGF+EVLKQCRLANGL+
Sbjct: 112 QP--CLYEIKQFLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151
>ref|NP_998885.1| coiled-coil-helix-coiled-coil-helix domain-containing protein 10,
mitochondrial precursor [Homo sapiens].
Length = 142
Score = 58.9 bits (141), Expect = 6e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 476 CFYEVKQFLECAQNQGDLKLCEGFSEVLKQCRLANGLS 589
C YE++QFL+C+ Q DL LCEGFSE LKQC+ +GLS
Sbjct: 102 CAYEIRQFLDCSTTQSDLSLCEGFSEALKQCKYYHGLS 139
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,849,643
Number of extensions: 622740
Number of successful extensions: 2066
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2060
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 198
Effective length of database: 14,934,836
Effective search space: 2957097528
Effective search space used: 2957097528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007748
(901 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1479 0.0
Sscrofa_Chr03 585 e-164
Sscrofa_Chr02 252 3e-64
Sscrofa_Chr06 204 6e-50
Sscrofa_Chr18 78 9e-12
>Sscrofa_Chr15
|| Length = 157681621
Score = 1479 bits (746), Expect = 0.0
Identities = 797/814 (97%)
Strand = Plus / Minus
Query: 66 agaagccgccagggtctcctctgagtttctctgtcttctaggttcgcgttcgttgcgcag 125
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155554726 agaagccgccagggtcttctctgagtttctctgtcttctaggttcgcgttcgttgcgcag 155554667
Query: 126 ttacgatgcctcgtggaagccgaagccgcacttcccgcatggcccctccggctagccggg 185
|||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 155554666 ttacgatgcctcgtggaagccgaagccgcagtttccacatggcccctccggctagccggg 155554607
Query: 186 cacctcagatgagagctgcacccaggccagcgccggcagctcagccaccagcagcagctc 245
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 155554606 cacctcagatgagagctgcacccaggccagcgctggcagctcagccaccagcagcagctc 155554547
Query: 246 caccatctgctgttggctcccctgctgctgcacctcggcagccaggtctcatggcccaga 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155554546 caccatctgctgttggctcccctgctgctgcacctcggcagccaggtctcatggcccaga 155554487
Query: 306 tggcaaccactgcagccggcgtggctgtgggttctgccgtcggccacacgataggtcatg 365
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155554486 tggcaaccactgtagccggcgtggctgtgggttctgccgtcggccacacgataggtcatg 155554427
Query: 366 cgatcactgggggcttcggtggaggaagtagtgctgagccctcaaggcctgacatcactt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155554426 cgatcactgggggcttcggtggaggaagtagtgctgagccctcaaggcctgacatcactt 155554367
Query: 426 accaggagcctcagggagcccagccagcacagcagcagcagatggccccatgcttctatg 485
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 155554366 accaggagcctcagggagcccagccagcacagcagcagcagattggcccatgcttctatg 155554307
Query: 486 aggtgaaacagtttttggagtgtgcccagaaccagggtgaccttaagctttgtgagggtt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155554306 aggtgaaacagtttttggagtgtgcccagaaccagggtgaccttaagctttgtgagggtt 155554247
Query: 546 tcagcgaggtgctgaaacaatgcagactggcaaatggattatcttaatcaagaagctcca 605
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 155554246 tcagcgaggtgttgaaacaatgcagactggcaaatggattatcttaagcaagaagctcca 155554187
Query: 606 ctgaagacatgaaaaatcaccctccatgacctggttgatttagcataaaaatgtgattga 665
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 155554186 ttgaagacatgaaaaatcaccccccatgacctggttgatttagcataaaaatgtgattga 155554127
Query: 666 tcatgaagatataaagtgtgaaatcaagattaaacctctcctctatcactaatagctttc 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155554126 tcatgaagatataaagtgtgaaatcaagattaaacctctcctctatcactaatagctttc 155554067
Query: 726 gtgcttcagaattgcagtggaggagggtattcttctgatgtggaagctcattgagtattg 785
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 155554066 gtgcttcagaattgcagtggaggagggtattcttctgatgtggaagttcattgagtactg 155554007
Query: 786 agtttggagctgggcagatgtttatgtggcctctgaaacatgcttttctgatgttattga 845
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155554006 agtttggggctgggcagatgtttatgtggcctctgaaacatgcttttctgatgttattgt 155553947
Query: 846 ttgtgaattaattagaataaagagattttctttc 879
|||||||||||||||||||||||||||||||||
Sbjct: 155553946 ctgtgaattaattagaataaagagattttctttc 155553913
>Sscrofa_Chr03
|| Length = 144787322
Score = 585 bits (295), Expect = e-164
Identities = 298/299 (99%)
Strand = Plus / Plus
Query: 581 ggattatcttaatcaagaagctccactgaagacatgaaaaatcaccctccatgacctggt 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17071574 ggattatcttaatcaagaagctccactgaagacatgaaaaatcaccctccatgacctggt 17071633
Query: 641 tgatttagcataaaaatgtgattgatcatgaagatataaagtgtgaaatcaagattaaac 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17071634 tgatttagcataaaaatgtgattgatcatgaagatataaagtgtgaaatcaagattaaac 17071693
Query: 701 ctctcctctatcactaatagctttcgtgcttcagaattgcagtggaggagggtattcttc 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17071694 ctctcctctatcactaatagctttcgtgcttcagaattgcagtggaggagggtattcttc 17071753
Query: 761 tgatgtggaagctcattgagtattgagtttggagctgggcagatgtttatgtggcctctg 820
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17071754 tgatgtggaagttcattgagtattgagtttggagctgggcagatgtttatgtggcctctg 17071813
Query: 821 aaacatgcttttctgatgttattgattgtgaattaattagaataaagagattttctttc 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17071814 aaacatgcttttctgatgttattgattgtgaattaattagaataaagagattttctttc 17071872
Score = 502 bits (253), Expect = e-139
Identities = 253/253 (100%)
Strand = Plus / Plus
Query: 179 agccgggcacctcagatgagagctgcacccaggccagcgccggcagctcagccaccagca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17067789 agccgggcacctcagatgagagctgcacccaggccagcgccggcagctcagccaccagca 17067848
Query: 239 gcagctccaccatctgctgttggctcccctgctgctgcacctcggcagccaggtctcatg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17067849 gcagctccaccatctgctgttggctcccctgctgctgcacctcggcagccaggtctcatg 17067908
Query: 299 gcccagatggcaaccactgcagccggcgtggctgtgggttctgccgtcggccacacgata 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17067909 gcccagatggcaaccactgcagccggcgtggctgtgggttctgccgtcggccacacgata 17067968
Query: 359 ggtcatgcgatcactgggggcttcggtggaggaagtagtgctgagccctcaaggcctgac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17067969 ggtcatgcgatcactgggggcttcggtggaggaagtagtgctgagccctcaaggcctgac 17068028
Query: 419 atcacttaccagg 431
|||||||||||||
Sbjct: 17068029 atcacttaccagg 17068041
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 3 gagagctgattggttgcgcgctgaggccggccccgccttccgacttccgctgtcggtctc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17065142 gagagctgattggttgcgcgctgaggccggccccgccttccgacttccgctgtcggtctc 17065201
Query: 63 tgcagaagccgccagggtctcctctgagtttctctgtcttctaggttcgcgttcgttgcg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17065202 tgcagaagccgccagggtctcctctgagtttctctgtcttctaggttcgcgttcgttgcg 17065261
Query: 123 cagttacgatgcctcgtggaagccgaagccgcacttcccgcatggcccctccggctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17065262 cagttacgatgcctcgtggaagccgaagccgcacttcccgcatggcccctccggctag 17065319
Score = 307 bits (155), Expect = 6e-81
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 428 caggagcctcagggagcccagccagcacagcagcagcagatggccccatgcttctatgag 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17069792 caggagcctcagggagcccagccagcacagcagcagcagatggccccatgcttctatgag 17069851
Query: 488 gtgaaacagtttttggagtgtgcccagaaccagggtgaccttaagctttgtgagggtttc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17069852 gtgaaacagtttttggagtgtgcccagaaccagggtgaccttaagctttgtgagggtttc 17069911
Query: 548 agcgaggtgctgaaacaatgcagactggcaaatgg 582
|||||||||||||||||||||||||||||||||||
Sbjct: 17069912 agcgaggtgctgaaacaatgcagactggcaaatgg 17069946
>Sscrofa_Chr02
|| Length = 162569375
Score = 252 bits (127), Expect = 3e-64
Identities = 190/211 (90%)
Strand = Plus / Minus
Query: 669 tgaagatataaagtgtgaaatcaagattaaacctctcctctatcactaatagctttcgtg 728
|||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct: 70640874 tgaagatacaaagtgtgaaatcaagattaagcctctcctctatcactaaaagctttcatg 70640815
Query: 729 cttcagaattgcagtggaggagggtattcttctgatgtggaagctcattgagtattgagt 788
||||||||||| ||||| ||||||| |||| | |||||| ||||||||||||||||
Sbjct: 70640814 cttcagaattgtggtggaagagggtagtcttacaacatggaagttcattgagtattgagt 70640755
Query: 789 ttggagctgggcagatgtttatgtggcctctgaaacatgcttttctgatgttattgattg 848
|||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||| |||
Sbjct: 70640754 ttggggctgggcagatgtttgtgtggcctcttaaacatgtttttctgatgttattgtttg 70640695
Query: 849 tgaattaattagaataaagagattttctttc 879
|||||||||||||| |||| |||||||||||
Sbjct: 70640694 tgaattaattagaacaaagcgattttctttc 70640664
Score = 153 bits (77), Expect = 2e-34
Identities = 123/137 (89%), Gaps = 1/137 (0%)
Strand = Plus / Minus
Query: 518 cagggtgaccttaagctttgtgagggtttcagcgaggtgctgaaacaatgcagactggca 577
||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 70641292 cagggtgactctaagcttgttgagggtttcagtgaggtgctgaaacaatgcagactggca 70641233
Query: 578 aatggattatcttaatcaagaagctccactgaagacatgaaaaatcaccctccatgacct 637
||||| | |||||||||||||||||||| |||||| |||||| ||| || ||||||||
Sbjct: 70641232 aatgg-taatcttaatcaagaagctccattgaagatgtgaaaagtcatccctcatgacct 70641174
Query: 638 ggttgatttagcataaa 654
|||||||||||||||||
Sbjct: 70641173 ggttgatttagcataaa 70641157
>Sscrofa_Chr06
|| Length = 157765593
Score = 204 bits (103), Expect = 6e-50
Identities = 295/366 (80%), Gaps = 31/366 (8%)
Strand = Plus / Minus
Query: 240 cagctccaccatctgctgttggctcccctgctgctgcacctcggcagccaggtctcatgg 299
||||||||||||||||| |||||||||||||||||||||| ||||||||| || ||||
Sbjct: 146777331 cagctccaccatctgctaatggctcccctgctgctgcaccttggcagccagatccgatgg 146777272
Query: 300 cccagatggcaaccactgcagccggcgtggctgtgggttctgccgtcggccacacgatag 359
|||||||||||||| ||||| | || | ||||||| |||||| |||||| || |||||
Sbjct: 146777271 cccagatggcaacccctgcaactggtgcatctgtgggctctgccctcggccgcatgatag 146777212
Query: 360 gtcatgcgatcactgggggcttcggtggaggaagtagtgctgagccctcaaggcctgaca 419
||||||| ||| || |||||||| |||||||||| | |||||||||
Sbjct: 146777211 gtcatgccatccctcggggcttcagtggaggaagaaatgctgagcc-------------- 146777166
Query: 420 tcacttaccaggagcctcagggagcccagccagcacagcagcagcagatggccccatgct 479
|||||||||||||||| |||||| |||||||||||| |||| | ||||||||
Sbjct: 146777165 -------ccaggagcctcagggaccccagctggcacagcagcaggagattggcccatgct 146777113
Query: 480 tctatgaggtgaaacagtttttggagtgtgcccagaaccagggtgaccttaagctttgtg 539
|||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 146777112 tctatgaggtgaaacagtttttgg----------tcaccagggtgcccttaagctttgtg 146777063
Query: 540 agggtttcagcgaggtgctgaaacaatgcagactggcaaatggattatcttaatcaagaa 599
|| |||||| |||||||| |||||| |||||| ||||||||||||| |||||||||||
Sbjct: 146777062 agagtttcatcgaggtgccgaaacagtgcagaagggcaaatggattagcttaatcaagac 146777003
Query: 600 gctcca 605
||||||
Sbjct: 146777002 gctcca 146776997
Score = 149 bits (75), Expect = 3e-33
Identities = 138/158 (87%), Gaps = 2/158 (1%)
Strand = Plus / Minus
Query: 59 tctctgcagaagccgccagggtctcctctgagtttctctgtcttctaggttcgcgttcgt 118
||||||||||||||||||||||||||||||||| || || |||| ||| || || | ||
Sbjct: 146777483 tctctgcagaagccgccagggtctcctctgagtctcact--cttccaggctcccggttgt 146777426
Query: 119 tgcgcagttacgatgcctcgtggaagccgaagccgcacttcccgcatggcccctccggct 178
|| ||||| | || ||||| |||||||| |||||||||||||| |||||||||||| ||
Sbjct: 146777425 tgtgcagtgaggacgcctcctggaagccaaagccgcacttcccacatggcccctcctgcc 146777366
Query: 179 agccgggcacctcagatgagagctgcacccaggccagc 216
|||||||||||| ||||| |||||||||||||||||||
Sbjct: 146777365 agccgggcacctgagatgcgagctgcacccaggccagc 146777328
Score = 105 bits (53), Expect = 4e-20
Identities = 87/97 (89%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 783 ttgagtttggagctgggcagatgtttatgtggcctctgaaacatgcttttctgatgttat 842
|||||||||| ||||||||||||||| |||||||||| ||| |||| |||||||||||||
Sbjct: 146776537 ttgagtttggggctgggcagatgtttgtgtggcctcttaaatatgc-tttctgatgttat 146776479
Query: 843 tgattgtgaattaattagaataaagagattttctttc 879
|| |||||||| |||| |||||||| | |||||||||
Sbjct: 146776478 tgtttgtgaatgaattcgaataaagtggttttctttc 146776442
>Sscrofa_Chr18
|| Length = 61220071
Score = 77.8 bits (39), Expect = 9e-12
Identities = 85/99 (85%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 368 atcactgggggcttcggtggaggaagtagtgctgagccctcaaggcctgacatcacttac 427
|||||||||| ||| |||||||||||| | |||||||||||||| ||| ||||||||
Sbjct: 23410977 atcactggggacttgagtggaggaagtaacgttgagccctcaaggc-tgatatcacttat 23411035
Query: 428 caggagcctcagggagcccagccagcacagcagcagcag 466
|||||||||||| || |||||||||| | |||||||||
Sbjct: 23411036 caggagcctcagagaacccagccagcctaccagcagcag 23411074
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,492,292
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 14
Length of query: 901
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 880
Effective length of database: 2,808,413,156
Effective search space: 2471403577280
Effective search space used: 2471403577280
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)