Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007749
(1195 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068842.1| lymphocyte-specific protein 1 [Bos taurus]. 422 e-118
Alignment gi|NP_776683.1| non-muscle caldesmon [Bos taurus]. 60 3e-09
>ref|NP_001068842.1| lymphocyte-specific protein 1 [Bos taurus].
Length = 363
Score = 422 bits (1086), Expect = e-118
Identities = 232/361 (64%), Positives = 249/361 (68%), Gaps = 10/361 (2%)
Frame = +1
Query: 85 MAEAPSHPDSEEQQELLVEEGSGLAAQWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 264
MAEAP HP SEE++ELL EE +GLAAQWS
Sbjct: 1 MAEAPGHPGSEERRELLAEEDTGLAAQWSVEDEEEAACEQHRRDTERQLRAQDEDEGSPS 60
Query: 265 XXXXXXXXXXXXX--DAPELDEDEGFGDWSQKPEQRRQP-WGPGETSDSGDPLQGESPEG 435
+APELDEDEGFGDWSQKPEQ+RQ WG GE D+GDP +GES EG
Sbjct: 61 PEQSEQEKLLSPQPSEAPELDEDEGFGDWSQKPEQQRQQHWGAGEAPDAGDPSRGESLEG 120
Query: 436 EQEEDRPGQHVCGS-------PARVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSP 594
QE+DRP Q GS PA VCLEEL LSPDSE +E L EASEP GP P+QGSP
Sbjct: 121 TQEDDRPHQCTSGSQGGDKLSPAEVCLEELHLSPDSEPREGLAPEASEPSGPQEPMQGSP 180
Query: 595 GLAETEEGDVQPQRCQQPRTPSPSVLEGTAPGSPPLSPSTKLIDRTESLHRSIQKSNSVK 774
GLAET+E + Q Q CQQPRTPSP VLEGT GSPPLSPSTKL DRTESL+RSI+KSNSV+
Sbjct: 181 GLAETKEAEAQHQSCQQPRTPSPLVLEGTEVGSPPLSPSTKLSDRTESLNRSIKKSNSVR 240
Query: 775 KSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQS 954
KSQPALPISKID RLEQYTQA+E AGR KLTRQPSIELPSMAVASTKSRWETGEVQAQS
Sbjct: 241 KSQPALPISKIDERLEQYTQAVEIAGRTPKLTRQPSIELPSMAVASTKSRWETGEVQAQS 300
Query: 955 AAKPPSCKDIVAGDMSKKSLWEQXXXXXXXXXXXXXXXXXRYKFVAAGHGKYEKVLVDES 1134
AAK CKDIVAGDMSK+ LWEQ RYKFVAAGHGKYEKVLVDE
Sbjct: 301 AAKSAPCKDIVAGDMSKRDLWEQKGGPKTSSTVKSTPSGKRYKFVAAGHGKYEKVLVDEG 360
Query: 1135 S 1137
S
Sbjct: 361 S 361
>ref|NP_776683.1| non-muscle caldesmon [Bos taurus].
Length = 535
Score = 60.5 bits (145), Expect = 3e-09
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Frame = +1
Query: 697 PLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQ 876
P S K+ +R E L++S+QKS VK + A +SKID RLEQYT AIE +A K T+
Sbjct: 382 PKGSSLKIEERAEFLNKSVQKSG-VKPTHQAAVVSKIDSRLEQYTSAIE-GTKAAKPTKP 439
Query: 877 PSIELPSMA--VASTKSRWETGEVQAQSAA 960
+ +LP A V + KS WE G V + A
Sbjct: 440 AASDLPVPAEGVRNIKSMWEKGNVFSSPTA 469
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.309 0.128 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,699,915
Number of extensions: 1400703
Number of successful extensions: 9139
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8977
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 294
Effective length of database: 14,240,222
Effective search space: 4186625268
Effective search space used: 4186625268
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007749
(1195 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854329.1| PREDICTED: similar to lymphocyte-specific prote... 406 e-113
Alignment gi|XP_859880.1| PREDICTED: similar to Non-muscle caldesmon (CDM... 58 2e-08
Alignment gi|XP_849832.1| PREDICTED: similar to Non-muscle caldesmon (CDM... 58 2e-08
>ref|XP_854329.1| PREDICTED: similar to lymphocyte-specific protein 1 isoform 1 [Canis
familiaris].
Length = 375
Score = 406 bits (1043), Expect = e-113
Identities = 213/287 (74%), Positives = 226/287 (78%), Gaps = 8/287 (2%)
Frame = +1
Query: 304 DAPELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGEQEEDRPGQHVCG--- 474
+APE DEDEGF DWSQKPEQR Q WG GETS+ G+P GESPEG+QEEDRP QH CG
Sbjct: 88 EAPEPDEDEGFSDWSQKPEQRPQDWGAGETSNCGEPPWGESPEGQQEEDRPHQHACGNQD 147
Query: 475 ----SPARVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEEGDVQPQRCQ 642
SPARV LEEL LSP SELQE LG+E ++P+ P G +QGS G AE EE D Q Q+CQ
Sbjct: 148 GDEQSPARVPLEELHLSPSSELQEGLGAEETDPKSPEGTIQGSLGPAEAEEADEQHQKCQ 207
Query: 643 QPRTPSPSVLEG-TAPGSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRL 819
QPRTPSP VLEG T GSPPLSPSTKL+DRTESL+RSI+KSNSVKKSQPALPISKID RL
Sbjct: 208 QPRTPSPLVLEGSTEQGSPPLSPSTKLVDRTESLNRSIRKSNSVKKSQPALPISKIDERL 267
Query: 820 EQYTQAIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPPSCKDIVAGDM 999
EQYTQAIETAGR KL RQPSIELPSMAVASTKSRWETGEVQAQS AK SCKDIVAGDM
Sbjct: 268 EQYTQAIETAGRTPKLVRQPSIELPSMAVASTKSRWETGEVQAQSTAKAASCKDIVAGDM 327
Query: 1000 SKKSLWEQXXXXXXXXXXXXXXXXXRYKFVAAGHGKYEKVLVDESSV 1140
SKKSLWEQ RYKFVA GHGKYEKVLVDE SV
Sbjct: 328 SKKSLWEQKGGSKTSSTIKSTPSGKRYKFVATGHGKYEKVLVDEGSV 374
>ref|XP_859880.1| PREDICTED: similar to Non-muscle caldesmon (CDM) (L-caldesmon)
isoform 2 [Canis familiaris].
Length = 568
Score = 57.8 bits (138), Expect = 2e-08
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +1
Query: 697 PLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQ 876
P S K+ +R E L++S+QKS VK + A +SKID RLEQYT AIE +
Sbjct: 415 PKGSSLKIEERAEFLNKSVQKSG-VKSTHQAAVVSKIDSRLEQYTSAIEGTKTTKPVKPA 473
Query: 877 PS-IELPSMAVASTKSRWETGEV 942
S + +P+ V + KS WE G V
Sbjct: 474 ASDLPVPAEGVRNIKSMWEKGNV 496
>ref|XP_849832.1| PREDICTED: similar to Non-muscle caldesmon (CDM) (L-caldesmon)
isoform 1 [Canis familiaris].
Length = 543
Score = 57.8 bits (138), Expect = 2e-08
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +1
Query: 697 PLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQ 876
P S K+ +R E L++S+QKS VK + A +SKID RLEQYT AIE +
Sbjct: 390 PKGSSLKIEERAEFLNKSVQKSG-VKSTHQAAVVSKIDSRLEQYTSAIEGTKTTKPVKPA 448
Query: 877 PS-IELPSMAVASTKSRWETGEV 942
S + +P+ V + KS WE G V
Sbjct: 449 ASDLPVPAEGVRNIKSMWEKGNV 471
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.309 0.128 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,503,660
Number of extensions: 1440548
Number of successful extensions: 8949
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8813
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 293
Effective length of database: 15,374,224
Effective search space: 4504647632
Effective search space used: 4504647632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007749
(1195 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134701.1| PREDICTED: caldesmon [Sus scrofa]. 59 4e-09
>ref|XP_003134701.1| PREDICTED: caldesmon [Sus scrofa].
Length = 871
Score = 59.3 bits (142), Expect = 4e-09
Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Frame = +1
Query: 697 PLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQ 876
P S K+ +R E L++S+QKS VK + A +SKID RLEQYT AIE + K T+
Sbjct: 718 PKGSSLKIEERAEFLNKSVQKSG-VKSTHQAAVVSKIDSRLEQYTSAIE-GTKTTKPTKP 775
Query: 877 PSIELPSMA--VASTKSRWETGEVQAQSAA 960
+ +LP A V + KS WE G V + A
Sbjct: 776 AASDLPVPAEGVRNIKSMWEKGNVFSSPTA 805
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.309 0.128 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,026,562
Number of extensions: 910675
Number of successful extensions: 5788
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5714
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,829,335
Effective search space: 2622312495
Effective search space used: 2622312495
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007749
(1195 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129543.1| lymphocyte-specific protein 1 isoform 1 [Mus... 283 1e-76
Alignment gi|NP_062264.1| lymphocyte-specific protein 1 isoform 2 [Mus mu... 277 1e-74
Alignment gi|NP_663550.1| caldesmon 1 [Mus musculus]. 61 2e-09
>ref|NP_001129543.1| lymphocyte-specific protein 1 isoform 1 [Mus musculus].
Length = 330
Score = 283 bits (725), Expect = 1e-76
Identities = 175/354 (49%), Positives = 199/354 (56%), Gaps = 3/354 (0%)
Frame = +1
Query: 85 MAEAPSHPDSEEQQELLVEEGSGLAAQWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 264
MAEA P EEQ+EL E+ GL QW
Sbjct: 1 MAEAAIDPRCEEQEELHAEDSEGLTTQWREEDEEEAAREQRQRERERQLQDQDKDKEDDG 60
Query: 265 XXXXXXXXXXXXXD--APELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGE 438
+ ELDEDEGFGDWSQKPE R+Q WG T++ +P Q E PE +
Sbjct: 61 GHSLEQPGQQTLISLKSSELDEDEGFGDWSQKPEPRQQFWGNEGTAEGTEPSQSERPEEK 120
Query: 439 QEEDRPGQHVCGSPARVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEEG 618
Q E+ Q A+V LEE L +P G G E EE
Sbjct: 121 QTEESSHQ------AKVHLEE----------SNLSYREPDPEDAVG------GSGEAEEH 158
Query: 619 DVQPQRCQQPRTPSPSVLEGTAP-GSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALP 795
++ Q RTPSP LE T SPPLSP+TKL DRTESL+RSI+KSNSVKKSQP LP
Sbjct: 159 LIR----HQVRTPSPLALEDTVELSSPPLSPTTKLADRTESLNRSIKKSNSVKKSQPTLP 214
Query: 796 ISKIDGRLEQYTQAIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPPSC 975
IS ID RL+QYTQA E++GR KL+RQPSIELPSMAVASTK+ WETGEVQ+QSA+K PSC
Sbjct: 215 ISTIDERLQQYTQATESSGRTPKLSRQPSIELPSMAVASTKTLWETGEVQSQSASKTPSC 274
Query: 976 KDIVAGDMSKKSLWEQXXXXXXXXXXXXXXXXXRYKFVAAGHGKYEKVLVDESS 1137
+DIVAGDMSKKSLWEQ RYKFVA GHGKYEKVLVDE S
Sbjct: 275 QDIVAGDMSKKSLWEQKGGSKISSTIKSTPSGKRYKFVATGHGKYEKVLVDEGS 328
>ref|NP_062264.1| lymphocyte-specific protein 1 isoform 2 [Mus musculus].
Length = 328
Score = 277 bits (709), Expect = 1e-74
Identities = 160/276 (57%), Positives = 181/276 (65%), Gaps = 1/276 (0%)
Frame = +1
Query: 313 ELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGEQEEDRPGQHVCGSPARVC 492
ELDEDEGFGDWSQKPE R+Q WG T++ +P Q E PE +Q E+ Q A+V
Sbjct: 77 ELDEDEGFGDWSQKPEPRQQFWGNEGTAEGTEPSQSERPEEKQTEESSHQ------AKVH 130
Query: 493 LEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEEGDVQPQRCQQPRTPSPSVL 672
LEE L +P G G E EE ++ Q RTPSP L
Sbjct: 131 LEE----------SNLSYREPDPEDAVG------GSGEAEEHLIR----HQVRTPSPLAL 170
Query: 673 EGTAP-GSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETA 849
E T SPPLSP+TKL DRTESL+RSI+KSNSVKKSQP LPIS ID RL+QYTQA E++
Sbjct: 171 EDTVELSSPPLSPTTKLADRTESLNRSIKKSNSVKKSQPTLPISTIDERLQQYTQATESS 230
Query: 850 GRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPPSCKDIVAGDMSKKSLWEQXX 1029
GR KL+RQPSIELPSMAVASTK+ WETGEVQ+QSA+K PSC+DIVAGDMSKKSLWEQ
Sbjct: 231 GRTPKLSRQPSIELPSMAVASTKTLWETGEVQSQSASKTPSCQDIVAGDMSKKSLWEQKG 290
Query: 1030 XXXXXXXXXXXXXXXRYKFVAAGHGKYEKVLVDESS 1137
RYKFVA GHGKYEKVLVDE S
Sbjct: 291 GSKISSTIKSTPSGKRYKFVATGHGKYEKVLVDEGS 326
>ref|NP_663550.1| caldesmon 1 [Mus musculus].
Length = 530
Score = 60.8 bits (146), Expect = 2e-09
Identities = 58/181 (32%), Positives = 84/181 (46%), Gaps = 2/181 (1%)
Frame = +1
Query: 436 EQEEDRPGQHVCGSPARVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEE 615
E+EE R Q AR E+ L + E + +EA+E R GL+E
Sbjct: 318 EEEEQRRKQEEADRKAREEEEKRRLKEEIERRR---AEAAEKRQK----MPEDGLSE--- 367
Query: 616 GDVQPQRCQQPRTPSPSVLEGTAPGSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALP 795
D +P +C P+ S K+ +R E L++S+QKS V+ + A
Sbjct: 368 -DKKPFKCFTPK-----------------GSSLKIEERAEFLNKSVQKSG-VRSTHQAAV 408
Query: 796 ISKIDGRLEQYTQAIETAGRAHKLTRQPS-IELPSMAVASTKSRWETGEV-QAQSAAKPP 969
+SKID RLEQYT AIE + + S + +P+ V + KS WE G V A SA+ P
Sbjct: 409 VSKIDSRLEQYTNAIEGTKASKPMKPAASDLPVPAEGVRNIKSMWEKGSVFSAPSASGTP 468
Query: 970 S 972
+
Sbjct: 469 N 469
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.309 0.128 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,520,942
Number of extensions: 1138836
Number of successful extensions: 6531
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6384
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 295
Effective length of database: 12,523,851
Effective search space: 3694536045
Effective search space used: 3694536045
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007749
(1195 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002330.1| lymphocyte-specific protein 1 isoform 1 [Homo s... 327 1e-89
Alignment gi|NP_001013273.1| lymphocyte-specific protein 1 isoform 2 [Hom... 325 7e-89
Alignment gi|NP_001013272.1| lymphocyte-specific protein 1 isoform 2 [Hom... 325 7e-89
Alignment gi|NP_001013271.1| lymphocyte-specific protein 1 isoform 2 [Hom... 325 7e-89
Alignment gi|NP_001229861.1| lymphocyte-specific protein 1 isoform 3 [Hom... 325 7e-89
Alignment gi|NP_149131.1| caldesmon isoform 5 [Homo sapiens]. 65 2e-10
Alignment gi|NP_149130.1| caldesmon isoform 4 [Homo sapiens]. 65 2e-10
Alignment gi|NP_149129.2| caldesmon isoform 1 [Homo sapiens]. 65 2e-10
Alignment gi|NP_004333.1| caldesmon isoform 2 [Homo sapiens]. 65 2e-10
Alignment gi|NP_149347.2| caldesmon isoform 3 [Homo sapiens]. 60 5e-09
>ref|NP_002330.1| lymphocyte-specific protein 1 isoform 1 [Homo sapiens].
Length = 339
Score = 327 bits (839), Expect = 1e-89
Identities = 201/353 (56%), Positives = 215/353 (60%), Gaps = 5/353 (1%)
Frame = +1
Query: 85 MAEAPSHPDSEEQQELLVEEGSGLAAQWSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 264
MAEA S P +EE++ELL G AQWS
Sbjct: 1 MAEASSDPGAEEREELL-----GPTAQWSVEDEEEAVHEQCQHERDRQLQAQDEEGGGHV 55
Query: 265 XXXXXXXXXXXXX--DAPELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGE 438
+APELDEDEGFGDWSQ+PEQR+Q G DSG+P Q SPEGE
Sbjct: 56 PERPKQEMLLSLKPSEAPELDEDEGFGDWSQRPEQRQQHEGAQGALDSGEPPQCRSPEGE 115
Query: 439 QEEDRPGQHVCGSPA--RVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETE 612
QE DRPG H V LEEL LS E GP VQ + G A E
Sbjct: 116 QE-DRPGLHAYEKEDSDEVHLEELSLS-------------KEGPGPEDTVQDNLGAAGAE 161
Query: 613 EGDVQPQRCQQPRTPSPSVLEGTAP-GSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPA 789
E + Q+CQQPRTPSP VLEGT SPPLSP+TKLIDRTESL+RSI+KSNSVKKSQP
Sbjct: 162 EEQEEHQKCQQPRTPSPLVLEGTIEQSSPPLSPTTKLIDRTESLNRSIEKSNSVKKSQPD 221
Query: 790 LPISKIDGRLEQYTQAIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPP 969
LPISKID LEQYTQAIETAGR KL RQ SIELPSMAVASTKSRWETGEVQAQSAAK P
Sbjct: 222 LPISKIDQWLEQYTQAIETAGRTPKLARQASIELPSMAVASTKSRWETGEVQAQSAAKTP 281
Query: 970 SCKDIVAGDMSKKSLWEQXXXXXXXXXXXXXXXXXRYKFVAAGHGKYEKVLVD 1128
SCKDIVAGDMSKKSLWEQ RYKFVA GHGKYEKVLV+
Sbjct: 282 SCKDIVAGDMSKKSLWEQKGGSKTSSTIKSTPSGKRYKFVATGHGKYEKVLVE 334
>ref|NP_001013273.1| lymphocyte-specific protein 1 isoform 2 [Homo sapiens].
Length = 277
Score = 325 bits (832), Expect = 7e-89
Identities = 185/278 (66%), Positives = 196/278 (70%), Gaps = 3/278 (1%)
Frame = +1
Query: 304 DAPELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGEQEEDRPGQHVCGSPA 483
+APELDEDEGFGDWSQ+PEQR+Q G DSG+P Q SPEGEQE DRPG H
Sbjct: 9 EAPELDEDEGFGDWSQRPEQRQQHEGAQGALDSGEPPQCRSPEGEQE-DRPGLHAYEKED 67
Query: 484 --RVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEEGDVQPQRCQQPRTP 657
V LEEL LS E GP VQ + G A EE + Q+CQQPRTP
Sbjct: 68 SDEVHLEELSLS-------------KEGPGPEDTVQDNLGAAGAEEEQEEHQKCQQPRTP 114
Query: 658 SPSVLEGTAP-GSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQ 834
SP VLEGT SPPLSP+TKLIDRTESL+RSI+KSNSVKKSQP LPISKID LEQYTQ
Sbjct: 115 SPLVLEGTIEQSSPPLSPTTKLIDRTESLNRSIEKSNSVKKSQPDLPISKIDQWLEQYTQ 174
Query: 835 AIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPPSCKDIVAGDMSKKSL 1014
AIETAGR KL RQ SIELPSMAVASTKSRWETGEVQAQSAAK PSCKDIVAGDMSKKSL
Sbjct: 175 AIETAGRTPKLARQASIELPSMAVASTKSRWETGEVQAQSAAKTPSCKDIVAGDMSKKSL 234
Query: 1015 WEQXXXXXXXXXXXXXXXXXRYKFVAAGHGKYEKVLVD 1128
WEQ RYKFVA GHGKYEKVLV+
Sbjct: 235 WEQKGGSKTSSTIKSTPSGKRYKFVATGHGKYEKVLVE 272
>ref|NP_001013272.1| lymphocyte-specific protein 1 isoform 2 [Homo sapiens].
Length = 277
Score = 325 bits (832), Expect = 7e-89
Identities = 185/278 (66%), Positives = 196/278 (70%), Gaps = 3/278 (1%)
Frame = +1
Query: 304 DAPELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGEQEEDRPGQHVCGSPA 483
+APELDEDEGFGDWSQ+PEQR+Q G DSG+P Q SPEGEQE DRPG H
Sbjct: 9 EAPELDEDEGFGDWSQRPEQRQQHEGAQGALDSGEPPQCRSPEGEQE-DRPGLHAYEKED 67
Query: 484 --RVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEEGDVQPQRCQQPRTP 657
V LEEL LS E GP VQ + G A EE + Q+CQQPRTP
Sbjct: 68 SDEVHLEELSLS-------------KEGPGPEDTVQDNLGAAGAEEEQEEHQKCQQPRTP 114
Query: 658 SPSVLEGTAP-GSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQ 834
SP VLEGT SPPLSP+TKLIDRTESL+RSI+KSNSVKKSQP LPISKID LEQYTQ
Sbjct: 115 SPLVLEGTIEQSSPPLSPTTKLIDRTESLNRSIEKSNSVKKSQPDLPISKIDQWLEQYTQ 174
Query: 835 AIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPPSCKDIVAGDMSKKSL 1014
AIETAGR KL RQ SIELPSMAVASTKSRWETGEVQAQSAAK PSCKDIVAGDMSKKSL
Sbjct: 175 AIETAGRTPKLARQASIELPSMAVASTKSRWETGEVQAQSAAKTPSCKDIVAGDMSKKSL 234
Query: 1015 WEQXXXXXXXXXXXXXXXXXRYKFVAAGHGKYEKVLVD 1128
WEQ RYKFVA GHGKYEKVLV+
Sbjct: 235 WEQKGGSKTSSTIKSTPSGKRYKFVATGHGKYEKVLVE 272
>ref|NP_001013271.1| lymphocyte-specific protein 1 isoform 2 [Homo sapiens].
Length = 277
Score = 325 bits (832), Expect = 7e-89
Identities = 185/278 (66%), Positives = 196/278 (70%), Gaps = 3/278 (1%)
Frame = +1
Query: 304 DAPELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGEQEEDRPGQHVCGSPA 483
+APELDEDEGFGDWSQ+PEQR+Q G DSG+P Q SPEGEQE DRPG H
Sbjct: 9 EAPELDEDEGFGDWSQRPEQRQQHEGAQGALDSGEPPQCRSPEGEQE-DRPGLHAYEKED 67
Query: 484 --RVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEEGDVQPQRCQQPRTP 657
V LEEL LS E GP VQ + G A EE + Q+CQQPRTP
Sbjct: 68 SDEVHLEELSLS-------------KEGPGPEDTVQDNLGAAGAEEEQEEHQKCQQPRTP 114
Query: 658 SPSVLEGTAP-GSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQ 834
SP VLEGT SPPLSP+TKLIDRTESL+RSI+KSNSVKKSQP LPISKID LEQYTQ
Sbjct: 115 SPLVLEGTIEQSSPPLSPTTKLIDRTESLNRSIEKSNSVKKSQPDLPISKIDQWLEQYTQ 174
Query: 835 AIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPPSCKDIVAGDMSKKSL 1014
AIETAGR KL RQ SIELPSMAVASTKSRWETGEVQAQSAAK PSCKDIVAGDMSKKSL
Sbjct: 175 AIETAGRTPKLARQASIELPSMAVASTKSRWETGEVQAQSAAKTPSCKDIVAGDMSKKSL 234
Query: 1015 WEQXXXXXXXXXXXXXXXXXRYKFVAAGHGKYEKVLVD 1128
WEQ RYKFVA GHGKYEKVLV+
Sbjct: 235 WEQKGGSKTSSTIKSTPSGKRYKFVATGHGKYEKVLVE 272
>ref|NP_001229861.1| lymphocyte-specific protein 1 isoform 3 [Homo sapiens].
Length = 467
Score = 325 bits (832), Expect = 7e-89
Identities = 185/278 (66%), Positives = 196/278 (70%), Gaps = 3/278 (1%)
Frame = +1
Query: 304 DAPELDEDEGFGDWSQKPEQRRQPWGPGETSDSGDPLQGESPEGEQEEDRPGQHVCGSPA 483
+APELDEDEGFGDWSQ+PEQR+Q G DSG+P Q SPEGEQE DRPG H
Sbjct: 199 EAPELDEDEGFGDWSQRPEQRQQHEGAQGALDSGEPPQCRSPEGEQE-DRPGLHAYEKED 257
Query: 484 --RVCLEELCLSPDSELQEELGSEASEPRGPAGPVQGSPGLAETEEGDVQPQRCQQPRTP 657
V LEEL LS E GP VQ + G A EE + Q+CQQPRTP
Sbjct: 258 SDEVHLEELSLS-------------KEGPGPEDTVQDNLGAAGAEEEQEEHQKCQQPRTP 304
Query: 658 SPSVLEGTAP-GSPPLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQ 834
SP VLEGT SPPLSP+TKLIDRTESL+RSI+KSNSVKKSQP LPISKID LEQYTQ
Sbjct: 305 SPLVLEGTIEQSSPPLSPTTKLIDRTESLNRSIEKSNSVKKSQPDLPISKIDQWLEQYTQ 364
Query: 835 AIETAGRAHKLTRQPSIELPSMAVASTKSRWETGEVQAQSAAKPPSCKDIVAGDMSKKSL 1014
AIETAGR KL RQ SIELPSMAVASTKSRWETGEVQAQSAAK PSCKDIVAGDMSKKSL
Sbjct: 365 AIETAGRTPKLARQASIELPSMAVASTKSRWETGEVQAQSAAKTPSCKDIVAGDMSKKSL 424
Query: 1015 WEQXXXXXXXXXXXXXXXXXRYKFVAAGHGKYEKVLVD 1128
WEQ RYKFVA GHGKYEKVLV+
Sbjct: 425 WEQKGGSKTSSTIKSTPSGKRYKFVATGHGKYEKVLVE 462
>ref|NP_149131.1| caldesmon isoform 5 [Homo sapiens].
Length = 532
Score = 64.7 bits (156), Expect = 2e-10
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Frame = +1
Query: 697 PLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQ 876
P S K+ +R E L++S+QKS+ VK + A +SKID RLEQYT AIE ++ K T+
Sbjct: 378 PKGSSLKIEERAEFLNKSVQKSSGVKSTHQAAIVSKIDSRLEQYTSAIE-GTKSAKPTKP 436
Query: 877 PSIELPSMA--VASTKSRWETGEV-QAQSAAKPPS 972
+ +LP A V + KS WE G V + +AA P+
Sbjct: 437 AASDLPVPAEGVRNIKSMWEKGNVFSSPTAAGTPN 471
>ref|NP_149130.1| caldesmon isoform 4 [Homo sapiens].
Length = 558
Score = 64.7 bits (156), Expect = 2e-10
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Frame = +1
Query: 697 PLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQ 876
P S K+ +R E L++S+QKS+ VK + A +SKID RLEQYT AIE ++ K T+
Sbjct: 404 PKGSSLKIEERAEFLNKSVQKSSGVKSTHQAAIVSKIDSRLEQYTSAIE-GTKSAKPTKP 462
Query: 877 PSIELPSMA--VASTKSRWETGEV-QAQSAAKPPS 972
+ +LP A V + KS WE G V + +AA P+
Sbjct: 463 AASDLPVPAEGVRNIKSMWEKGNVFSSPTAAGTPN 497
>ref|NP_149129.2| caldesmon isoform 1 [Homo sapiens].
Length = 793
Score = 64.7 bits (156), Expect = 2e-10
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Frame = +1
Query: 697 PLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQ 876
P S K+ +R E L++S+QKS+ VK + A +SKID RLEQYT AIE ++ K T+
Sbjct: 639 PKGSSLKIEERAEFLNKSVQKSSGVKSTHQAAIVSKIDSRLEQYTSAIE-GTKSAKPTKP 697
Query: 877 PSIELPSMA--VASTKSRWETGEV-QAQSAAKPPS 972
+ +LP A V + KS WE G V + +AA P+
Sbjct: 698 AASDLPVPAEGVRNIKSMWEKGNVFSSPTAAGTPN 732
>ref|NP_004333.1| caldesmon isoform 2 [Homo sapiens].
Length = 538
Score = 64.7 bits (156), Expect = 2e-10
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Frame = +1
Query: 697 PLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQ 876
P S K+ +R E L++S+QKS+ VK + A +SKID RLEQYT AIE ++ K T+
Sbjct: 384 PKGSSLKIEERAEFLNKSVQKSSGVKSTHQAAIVSKIDSRLEQYTSAIE-GTKSAKPTKP 442
Query: 877 PSIELPSMA--VASTKSRWETGEV-QAQSAAKPPS 972
+ +LP A V + KS WE G V + +AA P+
Sbjct: 443 AASDLPVPAEGVRNIKSMWEKGNVFSSPTAAGTPN 477
>ref|NP_149347.2| caldesmon isoform 3 [Homo sapiens].
Length = 563
Score = 59.7 bits (143), Expect = 5e-09
Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Frame = +1
Query: 697 PLSPSTKLIDRTESLHRSIQKSNSVKKSQPALPISKIDGRLEQYTQAIETAGRAHKLTRQ 876
P S K+ +R E L++S+QKS VK + A +SKID RLEQYT AIE ++ K T+
Sbjct: 410 PKGSSLKIEERAEFLNKSVQKSG-VKSTHQAAIVSKIDSRLEQYTSAIE-GTKSAKPTKP 467
Query: 877 PSIELPSMA--VASTKSRWETGEV-QAQSAAKPPS 972
+ +LP A V + KS WE G V + +AA P+
Sbjct: 468 AASDLPVPAEGVRNIKSMWEKGNVFSSPTAAGTPN 502
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.309 0.128 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,497,961
Number of extensions: 1400827
Number of successful extensions: 8500
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8318
Number of HSP's successfully gapped: 10
Length of query: 398
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 293
Effective length of database: 14,835,944
Effective search space: 4346931592
Effective search space used: 4346931592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007749
(1195 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896354.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 240 1e-60
gb|GL896168.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 167 2e-38
>gb|GL896354.1| Sus scrofa unplaced genomic scaffold chrU_scaffold702
Length = 9040
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 158 ccgctcagtggagcctggaggatgaggaggaggccgcccgggagcggcgccggcgcgaga 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6429 ccgctcagtggagcctggaggatgaggaggaggccgcccgggagcggcgccggcgcgaga 6370
Query: 218 gggacaggcagcttcagggccaggacgaggatgaaggcggcccgggcccggagcagcagg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369 gggacaggcagcttcagggccaggacgaggatgaaggcggcccgggcccggagcagcagg 6310
Query: 278 a 278
|
Sbjct: 6309 a 6309
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 518 actcagagcttcaggaagagctgggatcagaggcctcagagcccagaggccccgcgggac 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3783 actcagagcttcaggaagagctgggatcagaggcctcagagcccagaggccccgcgggac 3724
Query: 578 ccgtgcagggcagcccaggcctggcagagacagaggagggggacgtgcag 627
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3723 ccgtgcagggcagcccaggcctggcagagacagaggagggggacgtgcag 3674
Score = 176 bits (89), Expect = 2e-41
Identities = 95/97 (97%)
Strand = Plus / Minus
Query: 1063 ccatctgggaagaggtacaaattcgtggccgccggacacgggaagtacgagaaggtgctt 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1974 ccatctgggaagaggtacaaattcgtggccgccggacacgggaagtacgagaaggtgctt 1915
Query: 1123 gtggacgaaagctccgtggcctaagtggcccttctcg 1159
||||||||| |||||||| ||||||||||||||||||
Sbjct: 1914 gtggacgaaggctccgtgccctaagtggcccttctcg 1878
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 842 agactgctggccgggcccacaagctgacccgccagccgtctattgagctgcccagcatgg 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2912 agactgctggccgggcccacaagctgacccgccagccgtctattgagctgcccagcatgg 2853
Query: 902 ccgtggcgagcacc 915
||||||||||||||
Sbjct: 2852 ccgtggcgagcacc 2839
Score = 79.8 bits (40), Expect = 3e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 977 aggatattgttgctggagacatgagcaagaagagcctctg 1016
||||||||||||||||||||||||||||||||||||||||
Sbjct: 2421 aggatattgttgctggagacatgagcaagaagagcctctg 2382
>gb|GL896168.1| Sus scrofa unplaced genomic scaffold chrU_scaffold535
Length = 339
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 760 agcaacagtgtgaagaagtcccagccagccctgcccatctccaagattgacgggcgcctg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 agcaacagtgtgaagaagtcccagccagccctgcccatctccaagattgacgggcgcctg 150
Query: 820 gagcaatacacccaggccatcgag 843
||||||||||||||||||||||||
Sbjct: 151 gagcaatacacccaggccatcgag 174
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,116,757
Number of extensions: 349
Number of successful extensions: 349
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 6
Length of query: 1195
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1174
Effective length of database: 2,808,413,156
Effective search space: 3297077045144
Effective search space used: 3297077045144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)