Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007754
(1135 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029866.1| COP9 signalosome complex subunit 4 [Bos taur... 567 e-162
Alignment gi|NP_001039893.1| 26S proteasome non-ATPase regulatory subunit... 52 1e-06
>ref|NP_001029866.1| COP9 signalosome complex subunit 4 [Bos taurus].
Length = 406
Score = 567 bits (1461), Expect = e-162
Identities = 301/351 (85%), Positives = 310/351 (88%)
Frame = +1
Query: 82 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL 261
QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVE+MVNENVSLVISRQLL
Sbjct: 7 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVESMVNENVSLVISRQLL 66
Query: 262 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 441
TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV
Sbjct: 67 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 126
Query: 442 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 621
LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH
Sbjct: 127 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 186
Query: 622 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 801
YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML
Sbjct: 187 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 246
Query: 802 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHPEGDHGGRF*HLG*SCH* 981
ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPH + L +
Sbjct: 247 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIE 306
Query: 982 TQFVVCKQII**YYV*RNWSPSRNSCS*AEKIASQMITEGRMNGINDPIEG 1134
+ ++ + + AEKIASQMITEGRMNG D I+G
Sbjct: 307 HNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDG 357
>ref|NP_001039893.1| 26S proteasome non-ATPase regulatory subunit 12 [Bos taurus].
Length = 456
Score = 51.6 bits (122), Expect = 1e-06
Identities = 54/231 (23%), Positives = 109/231 (47%), Gaps = 14/231 (6%)
Frame = +1
Query: 217 MVNENVSLVISRQ---------LLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQ 369
++NEN+ L+ R+ ++ CT++ + D K TL + I E +
Sbjct: 82 LLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIE 141
Query: 370 VASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPV 549
A + + LA+I E+ D + AA +L + +ET + ++E L+ RL L D +
Sbjct: 142 RARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKE-RVEFILEQMRLCLAVKDYI 200
Query: 550 QAEAYINRAS--LLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKT--IVH 717
+ + + + Q E+T E+L++ Y ++ + ++ + Y + Y T I
Sbjct: 201 RTQIISKKINTKFFQEENT-EKLKLKYYNLMIQLDQHEGSYLSICKHYRAI-YDTPCIQA 258
Query: 718 ESERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMY 867
ESE+ + ALK + ILA ++S ++ + D++ +++ Y L K++
Sbjct: 259 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLF 309
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,747,686
Number of extensions: 977474
Number of successful extensions: 3083
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3079
Number of HSP's successfully gapped: 4
Length of query: 378
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,240,222
Effective search space: 3901820828
Effective search space used: 3901820828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007754
(1135 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859327.1| PREDICTED: similar to COP9 signalosome subunit ... 568 e-162
Alignment gi|XP_535632.1| PREDICTED: similar to COP9 signalosome subunit ... 568 e-162
Alignment gi|XP_859288.1| PREDICTED: similar to COP9 signalosome subunit ... 538 e-153
Alignment gi|XP_862191.1| PREDICTED: similar to proteasome 26S non-ATPase... 52 1e-06
Alignment gi|XP_537584.2| PREDICTED: similar to 26S proteasome non-ATPase... 52 1e-06
>ref|XP_859327.1| PREDICTED: similar to COP9 signalosome subunit 4 isoform 3 [Canis
familiaris].
Length = 380
Score = 568 bits (1464), Expect = e-162
Identities = 302/351 (86%), Positives = 310/351 (88%)
Frame = +1
Query: 82 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL 261
QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL
Sbjct: 7 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL 66
Query: 262 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 441
TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV
Sbjct: 67 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 126
Query: 442 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 621
LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH
Sbjct: 127 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 186
Query: 622 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 801
YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML
Sbjct: 187 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 246
Query: 802 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHPEGDHGGRF*HLG*SCH* 981
ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPH + L +
Sbjct: 247 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIE 306
Query: 982 TQFVVCKQII**YYV*RNWSPSRNSCS*AEKIASQMITEGRMNGINDPIEG 1134
+ ++ + + AEKIASQMITEGRMNG D I+G
Sbjct: 307 HNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDG 357
>ref|XP_535632.1| PREDICTED: similar to COP9 signalosome subunit 4 isoform 1 [Canis
familiaris].
Length = 406
Score = 568 bits (1464), Expect = e-162
Identities = 302/351 (86%), Positives = 310/351 (88%)
Frame = +1
Query: 82 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL 261
QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL
Sbjct: 7 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL 66
Query: 262 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 441
TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV
Sbjct: 67 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 126
Query: 442 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 621
LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH
Sbjct: 127 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 186
Query: 622 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 801
YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML
Sbjct: 187 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 246
Query: 802 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHPEGDHGGRF*HLG*SCH* 981
ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPH + L +
Sbjct: 247 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIE 306
Query: 982 TQFVVCKQII**YYV*RNWSPSRNSCS*AEKIASQMITEGRMNGINDPIEG 1134
+ ++ + + AEKIASQMITEGRMNG D I+G
Sbjct: 307 HNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDG 357
>ref|XP_859288.1| PREDICTED: similar to COP9 signalosome subunit 4 isoform 2 [Canis
familiaris].
Length = 395
Score = 538 bits (1387), Expect = e-153
Identities = 291/351 (82%), Positives = 299/351 (85%)
Frame = +1
Query: 82 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL 261
QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL
Sbjct: 7 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL 66
Query: 262 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 441
TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV
Sbjct: 67 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 126
Query: 442 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 621
QYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH
Sbjct: 127 -----------QYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 175
Query: 622 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 801
YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML
Sbjct: 176 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 235
Query: 802 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHPEGDHGGRF*HLG*SCH* 981
ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPH + L +
Sbjct: 236 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIE 295
Query: 982 TQFVVCKQII**YYV*RNWSPSRNSCS*AEKIASQMITEGRMNGINDPIEG 1134
+ ++ + + AEKIASQMITEGRMNG D I+G
Sbjct: 296 HNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDG 346
>ref|XP_862191.1| PREDICTED: similar to proteasome 26S non-ATPase subunit 12 isoform
2 isoform 2 [Canis familiaris].
Length = 436
Score = 51.6 bits (122), Expect = 1e-06
Identities = 54/231 (23%), Positives = 109/231 (47%), Gaps = 14/231 (6%)
Frame = +1
Query: 217 MVNENVSLVISRQ---------LLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQ 369
++NEN+ L+ R+ ++ CT++ + D K TL + I E +
Sbjct: 62 LLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIE 121
Query: 370 VASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPV 549
A + + LA+I E+ D + AA +L + +ET + ++E L+ RL L D +
Sbjct: 122 RARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKE-RVEFILEQMRLCLAVKDYI 180
Query: 550 QAEAYINRAS--LLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKT--IVH 717
+ + + + Q E+T E+L++ Y ++ + ++ + Y + Y T I
Sbjct: 181 RTQIISKKINTKFFQEENT-EKLKLKYYNLMIQLDQHEGSYLSICKHYRAI-YDTPCIQA 238
Query: 718 ESERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMY 867
ESE+ + ALK + ILA ++S ++ + D++ +++ Y L K++
Sbjct: 239 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLF 289
>ref|XP_537584.2| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
12 (26S proteasome regulatory subunit p55) isoform 1
[Canis familiaris].
Length = 456
Score = 51.6 bits (122), Expect = 1e-06
Identities = 54/231 (23%), Positives = 109/231 (47%), Gaps = 14/231 (6%)
Frame = +1
Query: 217 MVNENVSLVISRQ---------LLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQ 369
++NEN+ L+ R+ ++ CT++ + D K TL + I E +
Sbjct: 82 LLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIE 141
Query: 370 VASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPV 549
A + + LA+I E+ D + AA +L + +ET + ++E L+ RL L D +
Sbjct: 142 RARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKE-RVEFILEQMRLCLAVKDYI 200
Query: 550 QAEAYINRAS--LLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKT--IVH 717
+ + + + Q E+T E+L++ Y ++ + ++ + Y + Y T I
Sbjct: 201 RTQIISKKINTKFFQEENT-EKLKLKYYNLMIQLDQHEGSYLSICKHYRAI-YDTPCIQA 258
Query: 718 ESERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMY 867
ESE+ + ALK + ILA ++S ++ + D++ +++ Y L K++
Sbjct: 259 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLF 309
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,440,689
Number of extensions: 1003412
Number of successful extensions: 3327
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3323
Number of HSP's successfully gapped: 11
Length of query: 378
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 274
Effective length of database: 15,407,560
Effective search space: 4221671440
Effective search space used: 4221671440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007754
(1135 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098774.1| COP9 signalosome complex subunit 4 [Sus scro... 568 e-162
>ref|NP_001098774.1| COP9 signalosome complex subunit 4 [Sus scrofa].
Length = 406
Score = 568 bits (1464), Expect = e-162
Identities = 302/351 (86%), Positives = 310/351 (88%)
Frame = +1
Query: 82 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL 261
QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL
Sbjct: 7 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL 66
Query: 262 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 441
TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV
Sbjct: 67 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 126
Query: 442 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 621
LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH
Sbjct: 127 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 186
Query: 622 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 801
YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML
Sbjct: 187 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 246
Query: 802 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHPEGDHGGRF*HLG*SCH* 981
ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPH + L +
Sbjct: 247 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIE 306
Query: 982 TQFVVCKQII**YYV*RNWSPSRNSCS*AEKIASQMITEGRMNGINDPIEG 1134
+ ++ + + AEKIASQMITEGRMNG D I+G
Sbjct: 307 HNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDG 357
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,524,750
Number of extensions: 624308
Number of successful extensions: 2109
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2107
Number of HSP's successfully gapped: 3
Length of query: 378
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 277
Effective length of database: 8,829,335
Effective search space: 2445725795
Effective search space used: 2445725795
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007754
(1135 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036131.1| COP9 signalosome complex subunit 4 [Mus musculu... 566 e-161
Alignment gi|NP_080170.1| 26S proteasome non-ATPase regulatory subunit 12... 51 1e-06
>ref|NP_036131.1| COP9 signalosome complex subunit 4 [Mus musculus].
Length = 406
Score = 566 bits (1459), Expect = e-161
Identities = 300/351 (85%), Positives = 309/351 (88%)
Frame = +1
Query: 82 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL 261
QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSG EQLEALKAFVEAMVNENVSLVISRQLL
Sbjct: 7 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLL 66
Query: 262 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 441
TDFCTHLPNLPDSTAKE+YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV
Sbjct: 67 TDFCTHLPNLPDSTAKEVYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 126
Query: 442 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 621
LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH
Sbjct: 127 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 186
Query: 622 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 801
YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML
Sbjct: 187 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 246
Query: 802 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHPEGDHGGRF*HLG*SCH* 981
ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPH + L +
Sbjct: 247 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIE 306
Query: 982 TQFVVCKQII**YYV*RNWSPSRNSCS*AEKIASQMITEGRMNGINDPIEG 1134
+ ++ + + AEKIASQMITEGRMNG D I+G
Sbjct: 307 HNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDG 357
>ref|NP_080170.1| 26S proteasome non-ATPase regulatory subunit 12 [Mus musculus].
Length = 456
Score = 51.2 bits (121), Expect = 1e-06
Identities = 53/231 (22%), Positives = 108/231 (46%), Gaps = 14/231 (6%)
Frame = +1
Query: 217 MVNENVSLVISRQ---------LLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQ 369
++NEN+ L+ R+ ++ CT++ + D K TL + I E +
Sbjct: 82 LLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIE 141
Query: 370 VASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPV 549
A + + LA+I E+ D + AA +L + +ET + ++E L+ RL L D +
Sbjct: 142 RARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKE-RVEFILEQMRLCLAVKDYI 200
Query: 550 QAEAYINRAS--LLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKT--IVH 717
+ + + + Q E+T E L++ Y ++ + ++ + Y + Y T I
Sbjct: 201 RTQIISKKINTKFFQEENT-ENLKLKYYNLMIQLDQHEGSYLSICKHYRAI-YDTPCIQA 258
Query: 718 ESERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMY 867
ES++ + ALK + ILA ++S ++ + D++ +++ Y L K++
Sbjct: 259 ESDKWQQALKSVVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLF 309
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,897,938
Number of extensions: 852008
Number of successful extensions: 2512
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2512
Number of HSP's successfully gapped: 4
Length of query: 378
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 275
Effective length of database: 12,523,851
Effective search space: 3444059025
Effective search space used: 3444059025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007754
(1135 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057213.2| COP9 signalosome complex subunit 4 [Homo sapien... 568 e-162
Alignment gi|NP_002807.1| 26S proteasome non-ATPase regulatory subunit 12... 52 1e-06
Alignment gi|NP_777360.1| 26S proteasome non-ATPase regulatory subunit 12... 52 1e-06
>ref|NP_057213.2| COP9 signalosome complex subunit 4 [Homo sapiens].
Length = 406
Score = 568 bits (1464), Expect = e-162
Identities = 302/351 (86%), Positives = 310/351 (88%)
Frame = +1
Query: 82 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL 261
QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL
Sbjct: 7 QDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLL 66
Query: 262 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 441
TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV
Sbjct: 67 TDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQV 126
Query: 442 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 621
LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH
Sbjct: 127 LVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIH 186
Query: 622 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 801
YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML
Sbjct: 187 YKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRML 246
Query: 802 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHPEGDHGGRF*HLG*SCH* 981
ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPH + L +
Sbjct: 247 ATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIE 306
Query: 982 TQFVVCKQII**YYV*RNWSPSRNSCS*AEKIASQMITEGRMNGINDPIEG 1134
+ ++ + + AEKIASQMITEGRMNG D I+G
Sbjct: 307 HNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDG 357
>ref|NP_002807.1| 26S proteasome non-ATPase regulatory subunit 12 isoform 1 [Homo
sapiens].
Length = 456
Score = 51.6 bits (122), Expect = 1e-06
Identities = 54/231 (23%), Positives = 109/231 (47%), Gaps = 14/231 (6%)
Frame = +1
Query: 217 MVNENVSLVISRQ---------LLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQ 369
++NEN+ L+ R+ ++ CT++ + D K TL + I E +
Sbjct: 82 LLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIE 141
Query: 370 VASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPV 549
A + + LA+I E+ D + AA +L + +ET + ++E L+ RL L D +
Sbjct: 142 RARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKE-RVEFILEQMRLCLAVKDYI 200
Query: 550 QAEAYINRAS--LLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKT--IVH 717
+ + + + Q E+T E+L++ Y ++ + ++ + Y + Y T I
Sbjct: 201 RTQIISKKINTKFFQEENT-EKLKLKYYNLMIQLDQHEGSYLSICKHYRAI-YDTPCIQA 258
Query: 718 ESERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMY 867
ESE+ + ALK + ILA ++S ++ + D++ +++ Y L K++
Sbjct: 259 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLF 309
>ref|NP_777360.1| 26S proteasome non-ATPase regulatory subunit 12 isoform 2 [Homo
sapiens].
Length = 436
Score = 51.6 bits (122), Expect = 1e-06
Identities = 54/231 (23%), Positives = 109/231 (47%), Gaps = 14/231 (6%)
Frame = +1
Query: 217 MVNENVSLVISRQ---------LLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQ 369
++NEN+ L+ R+ ++ CT++ + D K TL + I E +
Sbjct: 62 LLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIE 121
Query: 370 VASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPV 549
A + + LA+I E+ D + AA +L + +ET + ++E L+ RL L D +
Sbjct: 122 RARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKE-RVEFILEQMRLCLAVKDYI 180
Query: 550 QAEAYINRAS--LLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKT--IVH 717
+ + + + Q E+T E+L++ Y ++ + ++ + Y + Y T I
Sbjct: 181 RTQIISKKINTKFFQEENT-EKLKLKYYNLMIQLDQHEGSYLSICKHYRAI-YDTPCIQA 238
Query: 718 ESERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMY 867
ESE+ + ALK + ILA ++S ++ + D++ +++ Y L K++
Sbjct: 239 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLF 289
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,783,930
Number of extensions: 988692
Number of successful extensions: 3124
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3123
Number of HSP's successfully gapped: 5
Length of query: 378
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,868,908
Effective search space: 4074080792
Effective search space used: 4074080792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007754
(1135 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 331 5e-88
>Sscrofa_Chr08
|| Length = 148491826
Score = 331 bits (167), Expect = 5e-88
Identities = 174/175 (99%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 778 ggacagcagcgttctcggatgctggctactctctttaaggatgaaaggtgccagcaactt 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144585845 ggacagcagcgttctcggatgctggctactctctttaaggatgaaaggtgccagcaactt 144585786
Query: 838 gctgcttatgggatcttagagaagatgtacctggataggatcatcagaggaaatcagctt 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144585785 gctgcttatgggatcttagagaagatgtacctggataggatcatcagaggaaatcagctt 144585726
Query: 898 caagaatttgctgccatgctgatgccgcacccagaaggcgaccacggcggacggt 952
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 144585725 caagaatttgctgccatgctgatgccgca-ccagaaggcgaccacggcggacggt 144585672
Score = 311 bits (157), Expect = 5e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 474 acagtataatgtagattataaactggagacgtacctgaagattgctaggctctatctgga 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144590839 acagtataatgtagattataaactggagacgtacctgaagattgctaggctctatctgga 144590780
Query: 534 ggatgacgatccagtccaagcagaggcttacataaatcgggcgtcactgcttcagaatga 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144590779 ggatgacgatccagtccaagcagaggcttacataaatcgggcgtcactgcttcagaatga 144590720
Query: 594 gtcaaccaacgagcagttacagatacattataaggta 630
|||||||||||||||||||||||||||||||||||||
Sbjct: 144590719 gtcaaccaacgagcagttacagatacattataaggta 144590683
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 626 aggtatgctatgcacgggttcttgattatagaagaaaattcattgaagctgcgcagaggt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144590260 aggtatgctatgcacgggttcttgattatagaagaaaattcattgaagctgcgcagaggt 144590201
Query: 686 acaatgagctctcctacaagacaatagtgcacgaaagcgaaagactagaggccttaaaac 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144590200 acaatgagctctcctacaagacaatagtgcacgaaagcgaaagactagaggccttaaaac 144590141
Query: 746 atgctctgcactgtaccatcctggcatccgcggg 779
||||||||||||||||||||||||||||||||||
Sbjct: 144590140 atgctctgcactgtaccatcctggcatccgcggg 144590107
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 218 tggtaaatgagaacgttagcctcgtgatctctcgccagttgctgactgatttctgcacac 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144596387 tggtaaatgagaacgttagcctcgtgatctctcgccagttgctgactgatttctgcacac 144596328
Query: 278 atctccctaacctgcctgatagcacagccaaagaaatctatcatttcaccttggaaaaga 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144596327 atctccctaacctgcctgatagcacagccaaagaaatctatcatttcaccttggaaaaga 144596268
Query: 338 tccagcctagagtcatttcatttgaggagcaggt 371
||||||||||||||||||||||||||||||||||
Sbjct: 144596267 tccagcctagagtcatttcatttgaggagcaggt 144596234
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 1 ggactagactcgtttccctttggccgcgagaggccccgcagcctccgctgagctcggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144609194 ggactagactcgtttccctttggccgcgagaggccccgcagcctccgctgagctcggagg 144609135
Query: 61 aagatggcggcagccgtgcggcaggatttggcccagctcatgaattcgagcggctctcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144609134 aagatggcggcagccgtgcggcaggatttggcccagctcatgaattcgagcggctctcat 144609075
Query: 121 aaagatctggcgggcaagt 139
|||||||||||||||||||
Sbjct: 144609074 aaagatctggcgggcaagt 144609056
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 1 ggactagactcgtttccctttggccgcgagaggccccgcagcctccgctgagctcggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144783448 ggactagactcgtttccctttggccgcgagaggccccgcagcctccgctgagctcggagg 144783507
Query: 61 aagatggcggcagccgtgcggcaggatttggcccagctcatgaattcgagcggctctcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144783508 aagatggcggcagccgtgcggcaggatttggcccagctcatgaattcgagcggctctcat 144783567
Query: 121 aaagatctggcgggcaagt 139
|||||||||||||||||||
Sbjct: 144783568 aaagatctggcgggcaagt 144783586
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 367 caggttgcttccataagacagcatcttgcatccatatatgaaaaagaagaagattggaga 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144595256 caggttgcttccataagacagcatcttgcatccatatatgaaaaagaagaagattggaga 144595197
Query: 427 aatgcggcccaagtgttggtgggaattcctttggaaacaggacaaaa 473
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144595196 aatgcggcccaagtgttggtgggaattcctttggaaacaggacaaaa 144595150
Score = 192 bits (97), Expect = 3e-46
Identities = 112/117 (95%)
Strand = Plus / Minus
Query: 950 ggttctagcatcttggatagagctgtcattgaacacaatttgttgtctgcaagcaaatta 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144581286 ggttctagcatcttggatagagctgtcattgaacacaatttgttgtctgcaagcaaatta 144581227
Query: 1010 tataataatattacgtttgaagaaactggagcccctctagaaattcttgcagctaag 1066
|||||||||||||||||||||||| |||||||| |||||| |||| ||||||||||
Sbjct: 144581226 tataataatattacgtttgaagaacttggagcccttctagagattcctgcagctaag 144581170
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 138 gtatcgtcagatcctagaaaaagccattcagttatctggggcagaacaactagaagcttt 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144599873 gtatcgtcagatcctagaaaaagccattcagttatctggggcagaacaactagaagcttt 144599814
Query: 198 gaaagcttttgtggaagcga 217
||||||||||||||||||||
Sbjct: 144599813 gaaagcttttgtggaagcga 144599794
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 138 gtatcgtcagatcctagaaaaagccattcagttatctggggcagaacaactagaagcttt 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144792769 gtatcgtcagatcctagaaaaagccattcagttatctggggcagaacaactagaagcttt 144792828
Query: 198 gaaagcttttgtggaagcga 217
||||||||||||||||||||
Sbjct: 144792829 gaaagcttttgtggaagcga 144792848
Score = 99.6 bits (50), Expect = 3e-18
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 1066 gcagaaaaaatagcatcgcaaatgataacagaaggacgtatgaatggtattaatgatccg 1125
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct: 144579767 gcagaaaaaatagcatcgcaaatgataacagaaggacgtatgaatggatttattgatcag 144579708
Query: 1126 attgagggaa 1135
||||| ||||
Sbjct: 144579707 attgatggaa 144579698
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,938,890
Number of extensions: 183
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 11
Length of query: 1135
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1114
Effective length of database: 2,808,413,156
Effective search space: 3128572255784
Effective search space used: 3128572255784
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)