Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007756
(1603 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070519.1| ataxin-10 [Bos taurus]. 672 0.0
>ref|NP_001070519.1| ataxin-10 [Bos taurus].
Length = 475
Score = 672 bits (1734), Expect = 0.0
Identities = 353/446 (79%), Positives = 385/446 (86%), Gaps = 1/446 (0%)
Frame = +3
Query: 264 SGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQV 443
SGVM+PAPIQDLEALRALTALFKEQRNR+TAPRTIFQRVLDILKKSS AVELACR+P+QV
Sbjct: 12 SGVMMPAPIQDLEALRALTALFKEQRNRDTAPRTIFQRVLDILKKSSHAVELACRDPSQV 71
Query: 444 DHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTA 623
+HLA+SLQLITECFRCLRNACIECSVNQNSIRNL TIGVAVDLILLFRELRVEQ+SLLTA
Sbjct: 72 EHLASSLQLITECFRCLRNACIECSVNQNSIRNLGTIGVAVDLILLFRELRVEQDSLLTA 131
Query: 624 FRCGLQFLGNIASRNEASQRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMK 803
FRCGLQFLGNIASRNE SQ VVWMHAFPELFLSCLNHPD+KIVAYSSMILFTSL+SERMK
Sbjct: 132 FRCGLQFLGNIASRNEDSQSVVWMHAFPELFLSCLNHPDRKIVAYSSMILFTSLNSERMK 191
Query: 804 ELEENLNIAIDVVEAHRKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTI 983
ELEENLNIAIDVVEAH+KQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERV LLDL I
Sbjct: 192 ELEENLNIAIDVVEAHQKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVTLLDLMI 251
Query: 984 AKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLDVLC 1163
AKI G+EPLTKDD PVFLSHAEL+AS FVDQC+ VL LT+EQ T DEEALATIRLLDVLC
Sbjct: 252 AKIVGDEPLTKDDAPVFLSHAELIASTFVDQCKIVLKLTSEQHTDDEEALATIRLLDVLC 311
Query: 1164 EMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAEGFK 1343
E TANTDLLGYLQVFPGLLERVIDLLRLIH AG+D+T+IFS CASIKA+GD+++VAEGFK
Sbjct: 312 EKTANTDLLGYLQVFPGLLERVIDLLRLIHVAGNDSTNIFSACASIKADGDVSSVAEGFK 371
Query: 1344 SHLIRLIGNLCLQE*RETKTRSASWDGIPLILEQLRHQPQQP-LFKPVGWGTPSETSPRK 1520
SHLIRLIGNLC + ++ + + DGIPLIL+ P L + V + + T
Sbjct: 372 SHLIRLIGNLCYKN-KDNQDKVNELDGIPLILDSCGLDDSNPFLTQWVVYAIRNLTEDNS 430
Query: 1521 TARTQI*SAKMRNRAWQTRPSLKKRG 1598
+ I AKM + LKK G
Sbjct: 431 QNQDLI--AKMEEQGLADASLLKKMG 454
Score = 62.0 bits (149), Expect = 1e-09
Identities = 38/72 (52%), Positives = 43/72 (59%)
Frame = +2
Query: 1388 KRNQDKVSELGRHSPDSGXXXXXXXXXPFQTSGLGYAIRNLTKENGPNPDLIRKNEEQGL 1567
K NQDKV+EL P PF T + YAIRNLT++N N DLI K EEQGL
Sbjct: 386 KDNQDKVNELDG-IPLILDSCGLDDSNPFLTQWVVYAIRNLTEDNSQNQDLIAKMEEQGL 444
Query: 1568 ANPSLFKKKGFE 1603
A+ SL KK GFE
Sbjct: 445 ADASLLKKMGFE 456
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,347,127
Number of extensions: 1434219
Number of successful extensions: 5786
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5764
Number of HSP's successfully gapped: 2
Length of query: 534
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 427
Effective length of database: 14,140,958
Effective search space: 6038189066
Effective search space used: 6038189066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007756
(1603 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531697.2| PREDICTED: similar to Ataxin-10 (Spinocerebella... 671 0.0
Alignment gi|XP_857038.1| PREDICTED: similar to Ataxin-10 (Spinocerebella... 665 0.0
Alignment gi|XP_856954.1| PREDICTED: similar to Ataxin-10 (Spinocerebella... 57 5e-08
>ref|XP_531697.2| PREDICTED: similar to Ataxin-10 (Spinocerebellar ataxia type 10
protein) (Brain protein E46 homolog) isoform 1 [Canis
familiaris].
Length = 475
Score = 671 bits (1731), Expect = 0.0
Identities = 352/446 (78%), Positives = 382/446 (85%), Gaps = 1/446 (0%)
Frame = +3
Query: 264 SGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQV 443
SGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSS AVELACR+P+QV
Sbjct: 12 SGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSHAVELACRDPSQV 71
Query: 444 DHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTA 623
+HLA+SLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTA
Sbjct: 72 EHLASSLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTA 131
Query: 624 FRCGLQFLGNIASRNEASQRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMK 803
FRCGLQFLGNIASRNE SQ +VW+HAFPELFLSCLNHPDKKIVAYSSMILFTSL+SERMK
Sbjct: 132 FRCGLQFLGNIASRNEDSQSIVWVHAFPELFLSCLNHPDKKIVAYSSMILFTSLNSERMK 191
Query: 804 ELEENLNIAIDVVEAHRKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTI 983
ELEENLNIAIDV+EAH+KQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERV LLDL I
Sbjct: 192 ELEENLNIAIDVIEAHQKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVTLLDLII 251
Query: 984 AKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLDVLC 1163
AK+ G+EPLTKDD+PVFLSHAEL+A FVDQC+ VL LT+EQ T DEEALATIRLLDVLC
Sbjct: 252 AKLVGDEPLTKDDIPVFLSHAELIAGTFVDQCKMVLKLTSEQHTDDEEALATIRLLDVLC 311
Query: 1164 EMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAEGFK 1343
EMTANTDLL YLQVFPGLLERVIDLLRLIH AG+DT +IFS IKAEGDI+N+AEGFK
Sbjct: 312 EMTANTDLLSYLQVFPGLLERVIDLLRLIHVAGNDTANIFSSSGCIKAEGDISNMAEGFK 371
Query: 1344 SHLIRLIGNLCLQE*RETKTRSASWDGIPLILEQLRHQPQQP-LFKPVGWGTPSETSPRK 1520
SHLIRLIGNLC + ++ + + DGIPLIL+ P L + V + + T
Sbjct: 372 SHLIRLIGNLCYKN-KDNQDKVNELDGIPLILDSCSIDDSNPFLTQWVVYAIRNLTEDNS 430
Query: 1521 TARTQI*SAKMRNRAWQTRPSLKKRG 1598
+ I AKM + LKK G
Sbjct: 431 QNQDLI--AKMEEQGLADASLLKKMG 454
Score = 62.0 bits (149), Expect = 2e-09
Identities = 38/72 (52%), Positives = 43/72 (59%)
Frame = +2
Query: 1388 KRNQDKVSELGRHSPDSGXXXXXXXXXPFQTSGLGYAIRNLTKENGPNPDLIRKNEEQGL 1567
K NQDKV+EL P PF T + YAIRNLT++N N DLI K EEQGL
Sbjct: 386 KDNQDKVNELDG-IPLILDSCSIDDSNPFLTQWVVYAIRNLTEDNSQNQDLIAKMEEQGL 444
Query: 1568 ANPSLFKKKGFE 1603
A+ SL KK GFE
Sbjct: 445 ADASLLKKMGFE 456
>ref|XP_857038.1| PREDICTED: similar to Ataxin-10 (Spinocerebellar ataxia type 10
protein) (Brain protein E46 homolog) isoform 3 [Canis
familiaris].
Length = 478
Score = 665 bits (1716), Expect = 0.0
Identities = 351/449 (78%), Positives = 382/449 (85%), Gaps = 4/449 (0%)
Frame = +3
Query: 264 SGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQV 443
SGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSS AVELACR+P+QV
Sbjct: 12 SGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSHAVELACRDPSQV 71
Query: 444 DHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTA 623
+HLA+SLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTA
Sbjct: 72 EHLASSLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTA 131
Query: 624 FRCGLQFLGNIASRNEASQRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMK 803
FRCGLQFLGNIASRNE SQ +VW+HAFPELFLSCLNHPDKKIVAYSSMILFTSL+SERMK
Sbjct: 132 FRCGLQFLGNIASRNEDSQSIVWVHAFPELFLSCLNHPDKKIVAYSSMILFTSLNSERMK 191
Query: 804 ELEENLNIAIDVVEAHRKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTI 983
ELEENLNIAIDV+EAH+KQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERV LLDL I
Sbjct: 192 ELEENLNIAIDVIEAHQKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVTLLDLII 251
Query: 984 AKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQP---TGDEEALATIRLLD 1154
AK+ G+EPLTKDD+PVFLSHAEL+A FVDQC+ VL LT+EQP +G EALATIRLLD
Sbjct: 252 AKLVGDEPLTKDDIPVFLSHAELIAGTFVDQCKMVLKLTSEQPGWLSGGAEALATIRLLD 311
Query: 1155 VLCEMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAE 1334
VLCEMTANTDLL YLQVFPGLLERVIDLLRLIH AG+DT +IFS IKAEGDI+N+AE
Sbjct: 312 VLCEMTANTDLLSYLQVFPGLLERVIDLLRLIHVAGNDTANIFSSSGCIKAEGDISNMAE 371
Query: 1335 GFKSHLIRLIGNLCLQE*RETKTRSASWDGIPLILEQLRHQPQQP-LFKPVGWGTPSETS 1511
GFKSHLIRLIGNLC + ++ + + DGIPLIL+ P L + V + + T
Sbjct: 372 GFKSHLIRLIGNLCYKN-KDNQDKVNELDGIPLILDSCSIDDSNPFLTQWVVYAIRNLTE 430
Query: 1512 PRKTARTQI*SAKMRNRAWQTRPSLKKRG 1598
+ I AKM + LKK G
Sbjct: 431 DNSQNQDLI--AKMEEQGLADASLLKKMG 457
Score = 62.0 bits (149), Expect = 2e-09
Identities = 38/72 (52%), Positives = 43/72 (59%)
Frame = +2
Query: 1388 KRNQDKVSELGRHSPDSGXXXXXXXXXPFQTSGLGYAIRNLTKENGPNPDLIRKNEEQGL 1567
K NQDKV+EL P PF T + YAIRNLT++N N DLI K EEQGL
Sbjct: 389 KDNQDKVNELDG-IPLILDSCSIDDSNPFLTQWVVYAIRNLTEDNSQNQDLIAKMEEQGL 447
Query: 1568 ANPSLFKKKGFE 1603
A+ SL KK GFE
Sbjct: 448 ADASLLKKMGFE 459
>ref|XP_856954.1| PREDICTED: similar to Ataxin-10 (Spinocerebellar ataxia type 10
protein) (Brain protein E46 homolog) isoform 2 [Canis
familiaris].
Length = 51
Score = 57.0 bits (136), Expect = 5e-08
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +3
Query: 264 SGVMVPAPIQDLEALRALTALFKEQRNR 347
SGVMVPAPIQDLEALRALTALFKEQRNR
Sbjct: 12 SGVMVPAPIQDLEALRALTALFKEQRNR 39
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,366,654
Number of extensions: 1430946
Number of successful extensions: 5629
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5609
Number of HSP's successfully gapped: 5
Length of query: 534
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 426
Effective length of database: 15,274,216
Effective search space: 6506816016
Effective search space used: 6506816016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007756
(1603 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361742.1| PREDICTED: ataxin-10-like [Sus scrofa]. 451 e-127
Alignment gi|XP_003126015.2| PREDICTED: ataxin-10-like [Sus scrofa]. 406 e-113
Alignment gi|XP_003126014.1| PREDICTED: ataxin-10 [Sus scrofa]. 61 2e-13
>ref|XP_003361742.1| PREDICTED: ataxin-10-like [Sus scrofa].
Length = 300
Score = 451 bits (1159), Expect = e-127
Identities = 239/279 (85%), Positives = 243/279 (87%)
Frame = +3
Query: 318 TALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQVDHLAASLQLITECFRCLR 497
T L R+ ETAPRTIFQRVLDILKKSSRAVELACR LAASLQLITECFRCLR
Sbjct: 35 TGLAAFPRDEETAPRTIFQRVLDILKKSSRAVELACRXXXXXXXLAASLQLITECFRCLR 94
Query: 498 NACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEAS 677
NACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEAS
Sbjct: 95 NACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEAS 154
Query: 678 QRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRK 857
QRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRK
Sbjct: 155 QRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRK 214
Query: 858 QPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTIAKIAGEEPLTKDDVPVFL 1037
QPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTIAKIAGEEPLTKDDVPV
Sbjct: 215 QPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTIAKIAGEEPLTKDDVPV-- 272
Query: 1038 SHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLD 1154
AVLHLTAEQPTGDE + + L +
Sbjct: 273 ---------------AVLHLTAEQPTGDEVSTGFVVLAE 296
>ref|XP_003126015.2| PREDICTED: ataxin-10-like [Sus scrofa].
Length = 317
Score = 406 bits (1044), Expect = e-113
Identities = 207/214 (96%), Positives = 208/214 (97%)
Frame = +3
Query: 318 TALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQVDHLAASLQLITECFRCLR 497
T L R+ ETAPRTIFQRVLDILKKSSRAVELACREPAQVDHLAASLQLITECFRCLR
Sbjct: 104 TGLAAFPRDEETAPRTIFQRVLDILKKSSRAVELACREPAQVDHLAASLQLITECFRCLR 163
Query: 498 NACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEAS 677
NACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEAS
Sbjct: 164 NACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEAS 223
Query: 678 QRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRK 857
QRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRK
Sbjct: 224 QRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRK 283
Query: 858 QPESEWPFLIITDHFLKSPELVKAMYAKMSNQER 959
QPESEWPFLIITDHFLKSPELVKAMYAKMSNQER
Sbjct: 284 QPESEWPFLIITDHFLKSPELVKAMYAKMSNQER 317
Score = 113 bits (282), Expect = 3e-25
Identities = 60/72 (83%), Positives = 62/72 (86%), Gaps = 3/72 (4%)
Frame = +3
Query: 918 LVKAMYAKMSNQE---RVALLDLTIAKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAV 1088
LV + NQ+ RVALLDLTIAKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAV
Sbjct: 2 LVSVAKSHQRNQDLKNRVALLDLTIAKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAV 61
Query: 1089 LHLTAEQPTGDE 1124
LHLTAEQPTGDE
Sbjct: 62 LHLTAEQPTGDE 73
>ref|XP_003126014.1| PREDICTED: ataxin-10 [Sus scrofa].
Length = 123
Score = 60.8 bits (146), Expect(2) = 2e-13
Identities = 30/45 (66%), Positives = 34/45 (75%)
Frame = +2
Query: 1469 PFQTSGLGYAIRNLTKENGPNPDLIRKNEEQGLANPSLFKKKGFE 1603
PF T + YAIRNLT++N N DLI K EEQGLA+PSL KK GFE
Sbjct: 60 PFLTQWVVYAIRNLTEDNSRNQDLIAKMEEQGLADPSLLKKMGFE 104
Score = 33.9 bits (76), Expect(2) = 2e-13
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 1330 LKALSLISFV*SETCVYKNKEK-PRQGQRAGT-AFP*FWNSCGINHSNPFSNQWV 1488
LK +L S V ++CV N PR Q + P +SCGI+ SNPF QWV
Sbjct: 12 LKDPNLCSLVSVQSCVCHNATTGPRLEQVSELDGIPLILDSCGIDDSNPFLTQWV 66
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,207,714
Number of extensions: 993418
Number of successful extensions: 3598
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3582
Number of HSP's successfully gapped: 5
Length of query: 534
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 430
Effective length of database: 8,754,644
Effective search space: 3764496920
Effective search space used: 3764496920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007756
(1603 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058539.2| ataxin-10 [Mus musculus]. 630 0.0
>ref|NP_058539.2| ataxin-10 [Mus musculus].
Length = 475
Score = 630 bits (1625), Expect = 0.0
Identities = 320/446 (71%), Positives = 375/446 (84%), Gaps = 1/446 (0%)
Frame = +3
Query: 264 SGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQV 443
SG+MVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKS+ AVELACR+P+QV
Sbjct: 12 SGIMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSTHAVELACRDPSQV 71
Query: 444 DHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTA 623
+HLA+SLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDL+LLFRELRVEQ+SLLTA
Sbjct: 72 EHLASSLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLVLLFRELRVEQDSLLTA 131
Query: 624 FRCGLQFLGNIASRNEASQRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMK 803
FRCGLQFLGN+ASRNE SQ +VW+HAFPELF+SCLNHPDKKIVAY SMILFTSL++ERMK
Sbjct: 132 FRCGLQFLGNVASRNEESQSIVWVHAFPELFMSCLNHPDKKIVAYCSMILFTSLNAERMK 191
Query: 804 ELEENLNIAIDVVEAHRKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTI 983
+LEENLNIAI+V+EAH+K P SEWPFLII+DHFLKSPELV+AMY K+SNQER+ LLD+ I
Sbjct: 192 DLEENLNIAINVIEAHQKHPASEWPFLIISDHFLKSPELVEAMYGKLSNQERITLLDIVI 251
Query: 984 AKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLDVLC 1163
AK+ GEE LTKDD+ +F+ HAEL+A++F+DQCR VL LT+E T D+EAL TIRLLDVLC
Sbjct: 252 AKLVGEEQLTKDDISIFVRHAELIANSFMDQCRNVLKLTSEPHTEDKEALVTIRLLDVLC 311
Query: 1164 EMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAEGFK 1343
EMT+NT+LLGYLQVFPGL+ERVID+LR+IH G ++T+IFSP S+KAEGDI ++ EGFK
Sbjct: 312 EMTSNTELLGYLQVFPGLMERVIDVLRVIHEVGKESTNIFSPSDSLKAEGDIEHMTEGFK 371
Query: 1344 SHLIRLIGNLCLQE*RETKTRSASWDGIPLILEQLRHQPQQP-LFKPVGWGTPSETSPRK 1520
SHLIRLIGNLC + +E + + DGIPLIL+ P + + V + + T
Sbjct: 372 SHLIRLIGNLCYKN-KENQDKVNELDGIPLILDSSNIDDNNPFMMQWVVYAVRNLTEDNS 430
Query: 1521 TARTQI*SAKMRNRAWQTRPSLKKRG 1598
+ I AKM + LKK G
Sbjct: 431 QNQDVI--AKMEEQGLADASLLKKMG 454
Score = 59.7 bits (143), Expect = 6e-09
Identities = 35/72 (48%), Positives = 42/72 (58%)
Frame = +2
Query: 1388 KRNQDKVSELGRHSPDSGXXXXXXXXXPFQTSGLGYAIRNLTKENGPNPDLIRKNEEQGL 1567
K NQDKV+EL P PF + YA+RNLT++N N D+I K EEQGL
Sbjct: 386 KENQDKVNELDG-IPLILDSSNIDDNNPFMMQWVVYAVRNLTEDNSQNQDVIAKMEEQGL 444
Query: 1568 ANPSLFKKKGFE 1603
A+ SL KK GFE
Sbjct: 445 ADASLLKKMGFE 456
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,217,514
Number of extensions: 1170466
Number of successful extensions: 4408
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4402
Number of HSP's successfully gapped: 2
Length of query: 534
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 428
Effective length of database: 12,433,743
Effective search space: 5321642004
Effective search space used: 5321642004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007756
(1603 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037368.1| ataxin-10 isoform 1 [Homo sapiens]. 645 0.0
Alignment gi|NP_001161093.1| ataxin-10 isoform 2 [Homo sapiens]. 481 e-136
>ref|NP_037368.1| ataxin-10 isoform 1 [Homo sapiens].
Length = 475
Score = 645 bits (1664), Expect = 0.0
Identities = 325/402 (80%), Positives = 360/402 (89%)
Frame = +3
Query: 264 SGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQV 443
SGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSS AVELACR+P+QV
Sbjct: 12 SGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSHAVELACRDPSQV 71
Query: 444 DHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTA 623
++LA+SLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTA
Sbjct: 72 ENLASSLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTA 131
Query: 624 FRCGLQFLGNIASRNEASQRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMK 803
FRCGLQFLGNIASRNE SQ +VW+HAFPELFLSCLNHPDKKIVAYSSMILFTSL+ ERMK
Sbjct: 132 FRCGLQFLGNIASRNEDSQSIVWVHAFPELFLSCLNHPDKKIVAYSSMILFTSLNHERMK 191
Query: 804 ELEENLNIAIDVVEAHRKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTI 983
ELEENLNIAIDV++A++K PESEWPFLIITD FLKSPELV+AM+ K++NQERV LLDL I
Sbjct: 192 ELEENLNIAIDVIDAYQKHPESEWPFLIITDLFLKSPELVQAMFPKLNNQERVTLLDLMI 251
Query: 984 AKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLDVLC 1163
AKI +EPLTKDD+PVFL HAEL+AS FVDQC+ VL L +E+P DEEALATIRLLDVLC
Sbjct: 252 AKITSDEPLTKDDIPVFLRHAELIASTFVDQCKTVLKLASEEPPDDEEALATIRLLDVLC 311
Query: 1164 EMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAEGFK 1343
EMT NT+LLGYLQVFPGLLERVIDLLR+IH AG +TT+IFS C ++AEGDI+NVA GFK
Sbjct: 312 EMTVNTELLGYLQVFPGLLERVIDLLRVIHVAGKETTNIFSNCGCVRAEGDISNVANGFK 371
Query: 1344 SHLIRLIGNLCLQE*RETKTRSASWDGIPLILEQLRHQPQQP 1469
SHLIRLIGNLC + ++ + + DGIPLIL+ P
Sbjct: 372 SHLIRLIGNLCYKN-KDNQDKVNELDGIPLILDNCNISDSNP 412
Score = 61.2 bits (147), Expect = 3e-09
Identities = 38/72 (52%), Positives = 43/72 (59%)
Frame = +2
Query: 1388 KRNQDKVSELGRHSPDSGXXXXXXXXXPFQTSGLGYAIRNLTKENGPNPDLIRKNEEQGL 1567
K NQDKV+EL P PF T + YAIRNLT++N N DLI K EEQGL
Sbjct: 386 KDNQDKVNELDG-IPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQDLIAKMEEQGL 444
Query: 1568 ANPSLFKKKGFE 1603
A+ SL KK GFE
Sbjct: 445 ADASLLKKVGFE 456
>ref|NP_001161093.1| ataxin-10 isoform 2 [Homo sapiens].
Length = 411
Score = 481 bits (1238), Expect = e-136
Identities = 249/346 (71%), Positives = 283/346 (81%)
Frame = +3
Query: 432 PAQVDHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQES 611
PA + L A L+ +T F+ RN RNLDTIGVAVDLILLFRELRVEQES
Sbjct: 17 PAPIQDLEA-LRALTALFKEQRN------------RNLDTIGVAVDLILLFRELRVEQES 63
Query: 612 LLTAFRCGLQFLGNIASRNEASQRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSS 791
LLTAFRCGLQFLGNIASRNE SQ +VW+HAFPELFLSCLNHPDKKIVAYSSMILFTSL+
Sbjct: 64 LLTAFRCGLQFLGNIASRNEDSQSIVWVHAFPELFLSCLNHPDKKIVAYSSMILFTSLNH 123
Query: 792 ERMKELEENLNIAIDVVEAHRKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALL 971
ERMKELEENLNIAIDV++A++K PESEWPFLIITD FLKSPELV+AM+ K++NQERV LL
Sbjct: 124 ERMKELEENLNIAIDVIDAYQKHPESEWPFLIITDLFLKSPELVQAMFPKLNNQERVTLL 183
Query: 972 DLTIAKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLL 1151
DL IAKI +EPLTKDD+PVFL HAEL+AS FVDQC+ VL L +E+P DEEALATIRLL
Sbjct: 184 DLMIAKITSDEPLTKDDIPVFLRHAELIASTFVDQCKTVLKLASEEPPDDEEALATIRLL 243
Query: 1152 DVLCEMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVA 1331
DVLCEMT NT+LLGYLQVFPGLLERVIDLLR+IH AG +TT+IFS C ++AEGDI+NVA
Sbjct: 244 DVLCEMTVNTELLGYLQVFPGLLERVIDLLRVIHVAGKETTNIFSNCGCVRAEGDISNVA 303
Query: 1332 EGFKSHLIRLIGNLCLQE*RETKTRSASWDGIPLILEQLRHQPQQP 1469
GFKSHLIRLIGNLC + ++ + + DGIPLIL+ P
Sbjct: 304 NGFKSHLIRLIGNLCYKN-KDNQDKVNELDGIPLILDNCNISDSNP 348
Score = 61.2 bits (147), Expect = 3e-09
Identities = 38/72 (52%), Positives = 43/72 (59%)
Frame = +2
Query: 1388 KRNQDKVSELGRHSPDSGXXXXXXXXXPFQTSGLGYAIRNLTKENGPNPDLIRKNEEQGL 1567
K NQDKV+EL P PF T + YAIRNLT++N N DLI K EEQGL
Sbjct: 322 KDNQDKVNELDG-IPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQDLIAKMEEQGL 380
Query: 1568 ANPSLFKKKGFE 1603
A+ SL KK GFE
Sbjct: 381 ADASLLKKVGFE 392
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,367,012
Number of extensions: 1401982
Number of successful extensions: 5207
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5191
Number of HSP's successfully gapped: 5
Length of query: 534
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 427
Effective length of database: 14,770,016
Effective search space: 6306796832
Effective search space used: 6306796832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007756
(1603 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 385 e-104
gb|JH118876.1| Sus scrofa unplaced genomic scaffold ChrUScaf3110 278 9e-72
>Sscrofa_Chr05
|| Length = 111506441
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 346 gagaaacggcacccaggactatcttccagagagtgctggacatcctgaagaagtcttccc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995485 gagaaacggcacccaggactatcttccagagagtgctggacatcctgaagaagtcttccc 995426
Query: 406 gcgccgtcgagctggcctgcagggagccagcgcaggtggaccacctggccgccagcctgc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995425 gcgccgtcgagctggcctgcagggagccagcgcaggtggaccacctggccgccagcctgc 995366
Query: 466 agctgatcacggagtgcttccggtgcctccgcaacgcctgcatcgagtgctccgtgaacc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995365 agctgatcacggagtgcttccggtgcctccgcaacgcctgcatcgagtgctccgtgaacc 995306
Query: 526 agaactccatcagg 539
||||||||||||||
Sbjct: 995305 agaactccatcagg 995292
Score = 335 bits (169), Expect = 4e-89
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 957 agggttgccctcttggacctcacgatagccaaaatagcgggagaggagcccctgaccaag 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905280 agggttgccctcttggacctcacgatagccaaaatagcgggagaggagcccctgaccaag 905339
Query: 1017 gacgacgtccctgtgttcctgagccacgccgagttggtggcaagcgcttttgtggaccag 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905340 gacgacgtccctgtgttcctgagccacgccgagttggtggcaagcgcttttgtggaccag 905399
Query: 1077 tgcagggctgtgctacacctgacggctgagcagcctaccggcgacgagg 1125
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905400 tgcagggctgtgctacacctgacggctgagcagcctaccggcgacgagg 905448
Score = 335 bits (169), Expect = 4e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 957 agggttgccctcttggacctcacgatagccaaaatagcgggagaggagcccctgaccaag 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950143 agggttgccctcttggacctcacgatagccaaaatagcgggagaggagcccctgaccaag 950084
Query: 1017 gacgacgtccctgtgttcctgagccacgccgagttggtggcaagcgcttttgtggaccag 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950083 gacgacgtccctgtgttcctgagccacgccgagttggtggcaagcgcttttgtggaccag 950024
Query: 1077 tgcagggctgtgctacacctgacggctgagcagcctaccggcgacgagg 1125
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950023 tgcagggctgtgctacacctgacggctgagcagcctaccggcgacgagg 949975
Score = 315 bits (159), Expect = 4e-83
Identities = 173/175 (98%), Gaps = 2/175 (1%)
Strand = Plus / Plus
Query: 1233 gatcttttgcgactgattcacgcagctggcagtgataccactagcatcttcagcccctgt 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917098 gatcttttgcgactgattcacgcagctggcagtgataccactagcatcttcagcccctgt 917157
Query: 1293 gcttccataaaagcagagggcgacatcactaacgtggctgaaggctttaagtctcatctc 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917158 gcttccataaaagcagagggcgacatcactaacgtggctgaaggctttaagtctcatctc 917217
Query: 1353 attcgtctgatcggaaacctgtgtttacaagaataaagagaaaccaagacaaggt 1407
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 917218 attcgtctgatcggaaacctgtg-ttacaagaataaagag-aaccaagacaaggt 917270
Score = 315 bits (159), Expect = 4e-83
Identities = 173/175 (98%), Gaps = 2/175 (1%)
Strand = Plus / Minus
Query: 1233 gatcttttgcgactgattcacgcagctggcagtgataccactagcatcttcagcccctgt 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938341 gatcttttgcgactgattcacgcagctggcagtgataccactagcatcttcagcccctgt 938282
Query: 1293 gcttccataaaagcagagggcgacatcactaacgtggctgaaggctttaagtctcatctc 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938281 gcttccataaaagcagagggcgacatcactaacgtggctgaaggctttaagtctcatctc 938222
Query: 1353 attcgtctgatcggaaacctgtgtttacaagaataaagagaaaccaagacaaggt 1407
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 938221 attcgtctgatcggaaacctgtg-ttacaagaataaagag-aaccaagacaaggt 938169
Score = 281 bits (142), Expect = 6e-73
Identities = 169/178 (94%)
Strand = Plus / Minus
Query: 169 tccggcccctgctcctcctcctcctcgtcggcggccgctcggcccgagctgcgcgcggca 228
|||||||| ||||| |||||| | ||||||| |||||||||||||| |||||||||||
Sbjct: 1027777 tccggcccatgctctcactcctcttagtcggcgtccgctcggcccgagatgcgcgcggca 1027718
Query: 229 agatggcggcgcccaggccgccgcccgccaggctgtccggcgtcatggtgcccgcgccca 288
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027717 agattgcggcgcccaggccgccgcccgccaggctgtccggcgtcatggtgcccgcgccca 1027658
Query: 289 tccaggacctggaggctctccgcgcgctgacggcgctcttcaaagagcagcggaatcg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027657 tccaggacctggaggctctccgcgcgctgacggcgctcttcaaagagcagcggaatcg 1027600
Score = 278 bits (140), Expect = 9e-72
Identities = 154/161 (95%)
Strand = Plus / Plus
Query: 719 gtcttgcttgaatcatccagacnnnnnnntcgttgcctactcgtccatgattttgttcac 778
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 883780 gtcttgcttgaatcatccagacaaaaaaatcgttgcctactcgtccatgattttgttcac 883839
Query: 779 atccctcagctctgagaggatgaaggaactggaggaaaacctcaacattgccatcgacgt 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883840 atccctcagctctgagaggatgaaggaactggaggaaaacctcaacattgccatcgacgt 883899
Query: 839 ggtggaagctcaccggaagcagccggagtcagagtggccgt 879
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 883900 ggtggaagctcaccggaagcagccggagtcagagtggccgt 883940
Score = 278 bits (140), Expect = 9e-72
Identities = 154/161 (95%)
Strand = Plus / Minus
Query: 719 gtcttgcttgaatcatccagacnnnnnnntcgttgcctactcgtccatgattttgttcac 778
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 971641 gtcttgcttgaatcatccagacaaaaaaatcgttgcctactcgtccatgattttgttcac 971582
Query: 779 atccctcagctctgagaggatgaaggaactggaggaaaacctcaacattgccatcgacgt 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971581 atccctcagctctgagaggatgaaggaactggaggaaaacctcaacattgccatcgacgt 971522
Query: 839 ggtggaagctcaccggaagcagccggagtcagagtggccgt 879
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 971521 ggtggaagctcaccggaagcagccggagtcagagtggccgt 971481
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1123 aggaggcactggctacaattaggcttcttgatgtcctctgtgaaatgactgctaataccg 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914810 aggaggcactggctacaattaggcttcttgatgtcctctgtgaaatgactgctaataccg 914869
Query: 1183 atctgctcggctatctacaggtttttcctggcttgctggaaagagtgattg 1233
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914870 atctgctcggctatctacaggtttttcctggcttgctggaaagagtgattg 914920
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1123 aggaggcactggctacaattaggcttcttgatgtcctctgtgaaatgactgctaataccg 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940629 aggaggcactggctacaattaggcttcttgatgtcctctgtgaaatgactgctaataccg 940570
Query: 1183 atctgctcggctatctacaggtttttcctggcttgctggaaagagtgattg 1233
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940569 atctgctcggctatctacaggtttttcctggcttgctggaaagagtgattg 940519
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 2 gggacttccgcccgcgccccctcccctcgtcgcgccgtcgcgtcctcgtcggccgtggcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029682 gggacttccgcccgcgccccctcccctcgtcgcgccgtcgcgtcctcgtcggccgtggcc 1029623
Query: 62 agccctgcgcgtgccctcgcgctctctcgctcggcctcgggctgca 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029622 agccctgcgcgtgccctcgcgctctctcgctcggcctcgggctgca 1029577
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 619 cagctttccgctgcggcctgcagttcttgggcaacatcgcctcgcggaacgaagcctctc 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880825 cagctttccgctgcggcctgcagttcttgggcaacatcgcctcgcggaacgaagcctctc 880884
Query: 679 agcgtgtggtgtggatgcacgccttccccgagctctttctgt 720
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880885 agcgtgtggtgtggatgcacgccttccccgagctctttctgt 880926
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 619 cagctttccgctgcggcctgcagttcttgggcaacatcgcctcgcggaacgaagcctctc 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974593 cagctttccgctgcggcctgcagttcttgggcaacatcgcctcgcggaacgaagcctctc 974534
Query: 679 agcgtgtggtgtggatgcacgccttccccgagctctttctgt 720
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974533 agcgtgtggtgtggatgcacgccttccccgagctctttctgt 974492
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 536 caggaacttggatacaatcggtgttgctgtcgatctgattcttctttttcgagagctgcg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866552 caggaacttggatacaatcggtgttgctgtcgatctgattcttctttttcgagagctgcg 866611
Query: 596 agtggagcaggaatccctgctgacag 621
||||||||||||||||||||||||||
Sbjct: 866612 agtggagcaggaatccctgctgacag 866637
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 536 caggaacttggatacaatcggtgttgctgtcgatctgattcttctttttcgagagctgcg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988673 caggaacttggatacaatcggtgttgctgtcgatctgattcttctttttcgagagctgcg 988614
Query: 596 agtggagcaggaatccctgctgacag 621
||||||||||||||||||||||||||
Sbjct: 988613 agtggagcaggaatccctgctgacag 988588
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 878 gttcttgattattacagaccactttctgaaaagcccggaattggttaaagccatgtatgc 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895489 gttcttgattattacagaccactttctgaaaagcccggaattggttaaagccatgtatgc 895548
Query: 938 caaaatgagcaatcaagaaagg 959
||||||||||||||||||||||
Sbjct: 895549 caaaatgagcaatcaagaaagg 895570
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 878 gttcttgattattacagaccactttctgaaaagcccggaattggttaaagccatgtatgc 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959935 gttcttgattattacagaccactttctgaaaagcccggaattggttaaagccatgtatgc 959876
Query: 938 caaaatgagcaatcaagaaagg 959
||||||||||||||||||||||
Sbjct: 959875 caaaatgagcaatcaagaaagg 959854
Score = 79.8 bits (40), Expect = 4e-12
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 1404 aggtcagcgagctgggacggcattcccctgattctggaacagctgcggcatcaaccacag 1463
||||||||||||||| |||||||||||||||| ||||| ||||||||||||| || ||||
Sbjct: 721844 aggtcagcgagctgg-acggcattcccctgatcctgga-cagctgcggcatcgacgacag 721787
Query: 1464 caacccct 1471
||||||||
Sbjct: 721786 caacccct 721779
Score = 79.8 bits (40), Expect = 4e-12
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 1404 aggtcagcgagctgggacggcattcccctgattctggaacagctgcggcatcaaccacag 1463
||||||||||||||| |||||||||||||||| ||||| ||||||||||||| || ||||
Sbjct: 835355 aggtcagcgagctgg-acggcattcccctgatcctgga-cagctgcggcatcgacgacag 835298
Query: 1464 caacccct 1471
||||||||
Sbjct: 835297 caacccct 835290
Score = 65.9 bits (33), Expect = 6e-08
Identities = 90/105 (85%), Gaps = 3/105 (2%)
Strand = Plus / Minus
Query: 1479 ccagtgggttggggtacgccatccgaaacctcaccaaggaaaacggcccgaacccagatt 1538
||||||||| || |||||||||||||||||||||| |||| ||| ||| ||||| ||||
Sbjct: 811135 ccagtgggt-ggtgtacgccatccgaaacctcaccgaggacaacagccggaaccaggatt 811077
Query: 1539 tgatccgcaaaaat-gaggaacagggcctggcaaacccgtccctc 1582
|||| ||| || || ||||| ||||||||||| |||||||||||
Sbjct: 811076 tgat-cgcgaagatggaggagcagggcctggcggacccgtccctc 811033
Score = 60.0 bits (30), Expect = 4e-06
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 167 tctccggcccctgctcctcctcctcctcgtcggc 200
||||||||||||| ||||||||||||||||||||
Sbjct: 1029517 tctccggcccctggtcctcctcctcctcgtcggc 1029484
>gb|JH118876.1| Sus scrofa unplaced genomic scaffold ChrUScaf3110
Length = 216131
Score = 278 bits (140), Expect = 9e-72
Identities = 154/161 (95%)
Strand = Plus / Minus
Query: 719 gtcttgcttgaatcatccagacnnnnnnntcgttgcctactcgtccatgattttgttcac 778
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 20403 gtcttgcttgaatcatccagacaaaaaaatcgttgcctactcgtccatgattttgttcac 20344
Query: 779 atccctcagctctgagaggatgaaggaactggaggaaaacctcaacattgccatcgacgt 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20343 atccctcagctctgagaggatgaaggaactggaggaaaacctcaacattgccatcgacgt 20284
Query: 839 ggtggaagctcaccggaagcagccggagtcagagtggccgt 879
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 20283 ggtggaagctcaccggaagcagccggagtcagagtggccgt 20243
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 619 cagctttccgctgcggcctgcagttcttgggcaacatcgcctcgcggaacgaagcctctc 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23188 cagctttccgctgcggcctgcagttcttgggcaacatcgcctcgcggaacgaagcctctc 23129
Query: 679 agcgtgtggtgtggatgcacgccttccccgagctctttctgt 720
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23128 agcgtgtggtgtggatgcacgccttccccgagctctttctgt 23087
Score = 178 bits (90), Expect = 6e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 450 ctggccgccagcctgcagctgatcacggagtgcttccggtgcctccgcaacgcctgcatc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42905 ctggccgccagcctgcagctgatcacggagtgcttccggtgcctccgcaacgcctgcatc 42846
Query: 510 gagtgctccgtgaaccagaactccatcagg 539
||||||||||||||||||||||||||||||
Sbjct: 42845 gagtgctccgtgaaccagaactccatcagg 42816
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 536 caggaacttggatacaatcggtgttgctgtcgatctgattcttctttttcgagagctgcg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36468 caggaacttggatacaatcggtgttgctgtcgatctgattcttctttttcgagagctgcg 36409
Query: 596 agtggagcaggaatccctgctgacag 621
||||||||||||||||||||||||||
Sbjct: 36408 agtggagcaggaatccctgctgacag 36383
Score = 168 bits (85), Expect = 6e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 346 gagaaacggcacccaggactatcttccagagagtgctggacatcctgaagaagtcttccc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43090 gagaaacggcacccaggactatcttccagagagtgctggacatcctgaagaagtcttccc 43031
Query: 406 gcgccgtcgagctggcctgcaggga 430
|||||||||||||||||||||||||
Sbjct: 43030 gcgccgtcgagctggcctgcaggga 43006
Score = 155 bits (78), Expect = 9e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 957 agggttgccctcttggacctcacgatagccaaaatagcgggagaggagcccctgaccaag 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 agggttgccctcttggacctcacgatagccaaaatagcgggagaggagcccctgaccaag 1373
Query: 1017 gacgacgtccctgtgttc 1034
||||||||||||||||||
Sbjct: 1372 gacgacgtccctgtgttc 1355
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 1054 tggcaagcgcttttgtggaccagtgcagggctgtgctacacctgacggctgagcagccta 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 tggcaagcgcttttgtggaccagtgcagggctgtgctacacctgacggctgagcagccta 1195
Query: 1114 ccggcgacgagg 1125
||||||||||||
Sbjct: 1194 ccggcgacgagg 1183
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,565,493
Number of extensions: 395
Number of successful extensions: 395
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 28
Length of query: 1603
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1581
Effective length of database: 2,808,408,574
Effective search space: 4440093955494
Effective search space used: 4440093955494
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)