Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007758
(1015 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015572.1| protein DJ-1 [Bos taurus]. 360 1e-99
>ref|NP_001015572.1| protein DJ-1 [Bos taurus].
Length = 189
Score = 360 bits (923), Expect = 1e-99
Identities = 184/189 (97%), Positives = 186/189 (98%)
Frame = +2
Query: 236 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 415
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED
Sbjct: 1 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 60
Query: 416 AKKEGPYDVVVLPGGNLGAQNLSESAAVKDILKEQEKRKGLIAAICAGPTALLAHEIGFG 595
AKKEGPYDVVVLPGGNLGAQNLSESAAVK+ILKEQEKRKGLIAAICAGPTALLAHEIGFG
Sbjct: 61 AKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQEKRKGLIAAICAGPTALLAHEIGFG 120
Query: 596 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALAGKEVADQ 775
SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFAL IVE L GKEVADQ
Sbjct: 121 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALKIVEVLVGKEVADQ 180
Query: 776 VKAPLVLRD 802
VKAPLVL+D
Sbjct: 181 VKAPLVLKD 189
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,417,273
Number of extensions: 1008841
Number of successful extensions: 5293
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5263
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007758
(1015 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859031.1| PREDICTED: similar to DJ-1 protein isoform 6 [C... 358 6e-99
Alignment gi|XP_858995.1| PREDICTED: similar to DJ-1 protein isoform 5 [C... 358 6e-99
Alignment gi|XP_536733.1| PREDICTED: similar to DJ-1 protein isoform 1 [C... 358 6e-99
Alignment gi|XP_858951.1| PREDICTED: similar to DJ-1 protein isoform 4 [C... 162 5e-40
Alignment gi|XP_858871.1| PREDICTED: similar to DJ-1 protein isoform 3 [C... 125 8e-29
Alignment gi|XP_853823.1| PREDICTED: similar to DJ-1 protein [Canis famil... 88 1e-17
>ref|XP_859031.1| PREDICTED: similar to DJ-1 protein isoform 6 [Canis familiaris].
Length = 189
Score = 358 bits (918), Expect = 6e-99
Identities = 181/189 (95%), Positives = 187/189 (98%)
Frame = +2
Query: 236 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 415
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDV+ICPDASLED
Sbjct: 1 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVIICPDASLED 60
Query: 416 AKKEGPYDVVVLPGGNLGAQNLSESAAVKDILKEQEKRKGLIAAICAGPTALLAHEIGFG 595
AKKEGPYDVV+LPGGNLGAQNL ESAAVK+ILKEQE RKGLIAAICAGPTALLAHEIGFG
Sbjct: 61 AKKEGPYDVVILPGGNLGAQNLCESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG 120
Query: 596 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALAGKEVADQ 775
SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEAL+GK+VADQ
Sbjct: 121 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALSGKDVADQ 180
Query: 776 VKAPLVLRD 802
VKAPLVL+D
Sbjct: 181 VKAPLVLKD 189
>ref|XP_858995.1| PREDICTED: similar to DJ-1 protein isoform 5 [Canis familiaris].
Length = 189
Score = 358 bits (918), Expect = 6e-99
Identities = 181/189 (95%), Positives = 187/189 (98%)
Frame = +2
Query: 236 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 415
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDV+ICPDASLED
Sbjct: 1 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVIICPDASLED 60
Query: 416 AKKEGPYDVVVLPGGNLGAQNLSESAAVKDILKEQEKRKGLIAAICAGPTALLAHEIGFG 595
AKKEGPYDVV+LPGGNLGAQNL ESAAVK+ILKEQE RKGLIAAICAGPTALLAHEIGFG
Sbjct: 61 AKKEGPYDVVILPGGNLGAQNLCESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG 120
Query: 596 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALAGKEVADQ 775
SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEAL+GK+VADQ
Sbjct: 121 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALSGKDVADQ 180
Query: 776 VKAPLVLRD 802
VKAPLVL+D
Sbjct: 181 VKAPLVLKD 189
>ref|XP_536733.1| PREDICTED: similar to DJ-1 protein isoform 1 [Canis familiaris].
Length = 189
Score = 358 bits (918), Expect = 6e-99
Identities = 181/189 (95%), Positives = 187/189 (98%)
Frame = +2
Query: 236 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 415
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDV+ICPDASLED
Sbjct: 1 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVIICPDASLED 60
Query: 416 AKKEGPYDVVVLPGGNLGAQNLSESAAVKDILKEQEKRKGLIAAICAGPTALLAHEIGFG 595
AKKEGPYDVV+LPGGNLGAQNL ESAAVK+ILKEQE RKGLIAAICAGPTALLAHEIGFG
Sbjct: 61 AKKEGPYDVVILPGGNLGAQNLCESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG 120
Query: 596 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALAGKEVADQ 775
SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEAL+GK+VADQ
Sbjct: 121 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALSGKDVADQ 180
Query: 776 VKAPLVLRD 802
VKAPLVL+D
Sbjct: 181 VKAPLVLKD 189
>ref|XP_858951.1| PREDICTED: similar to DJ-1 protein isoform 4 [Canis familiaris].
Length = 84
Score = 162 bits (410), Expect = 5e-40
Identities = 80/83 (96%), Positives = 83/83 (100%)
Frame = +2
Query: 554 AGPTALLAHEIGFGSKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFAL 733
AGPTALLAHEIGFGSKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFAL
Sbjct: 2 AGPTALLAHEIGFGSKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFAL 61
Query: 734 AIVEALAGKEVADQVKAPLVLRD 802
AIVEAL+GK+VADQVKAPLVL+D
Sbjct: 62 AIVEALSGKDVADQVKAPLVLKD 84
>ref|XP_858871.1| PREDICTED: similar to DJ-1 protein isoform 3 [Canis familiaris].
Length = 73
Score = 125 bits (313), Expect = 8e-29
Identities = 63/64 (98%), Positives = 64/64 (100%)
Frame = +2
Query: 236 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 415
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDV+ICPDASLED
Sbjct: 1 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVIICPDASLED 60
Query: 416 AKKE 427
AKKE
Sbjct: 61 AKKE 64
>ref|XP_853823.1| PREDICTED: similar to DJ-1 protein [Canis familiaris].
Length = 54
Score = 87.8 bits (216), Expect = 1e-17
Identities = 43/53 (81%), Positives = 47/53 (88%)
Frame = +2
Query: 644 SHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALAGKEVADQVKAPLVLRD 802
SHYSYSENR+ KDGL+LTSRGP TSF FALAIVEAL+GK V DQVKA LVL+D
Sbjct: 2 SHYSYSENRMAKDGLVLTSRGPATSFAFALAIVEALSGKHVPDQVKATLVLKD 54
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,791,158
Number of extensions: 1007432
Number of successful extensions: 5415
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5394
Number of HSP's successfully gapped: 6
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007758
(1015 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001072131.1| protein DJ-1 [Sus scrofa]. 367 e-102
>ref|NP_001072131.1| protein DJ-1 [Sus scrofa].
Length = 189
Score = 367 bits (943), Expect = e-102
Identities = 189/189 (100%), Positives = 189/189 (100%)
Frame = +2
Query: 236 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 415
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED
Sbjct: 1 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 60
Query: 416 AKKEGPYDVVVLPGGNLGAQNLSESAAVKDILKEQEKRKGLIAAICAGPTALLAHEIGFG 595
AKKEGPYDVVVLPGGNLGAQNLSESAAVKDILKEQEKRKGLIAAICAGPTALLAHEIGFG
Sbjct: 61 AKKEGPYDVVVLPGGNLGAQNLSESAAVKDILKEQEKRKGLIAAICAGPTALLAHEIGFG 120
Query: 596 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALAGKEVADQ 775
SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALAGKEVADQ
Sbjct: 121 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALAGKEVADQ 180
Query: 776 VKAPLVLRD 802
VKAPLVLRD
Sbjct: 181 VKAPLVLRD 189
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,834,004
Number of extensions: 702641
Number of successful extensions: 3600
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3591
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007758
(1015 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065594.2| protein DJ-1 [Mus musculus]. 343 2e-94
>ref|NP_065594.2| protein DJ-1 [Mus musculus].
Length = 189
Score = 343 bits (879), Expect = 2e-94
Identities = 173/189 (91%), Positives = 182/189 (96%)
Frame = +2
Query: 236 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 415
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDV+ICPD SLED
Sbjct: 1 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLED 60
Query: 416 AKKEGPYDVVVLPGGNLGAQNLSESAAVKDILKEQEKRKGLIAAICAGPTALLAHEIGFG 595
AK +GPYDVVVLPGGNLGAQNLSES VK+ILKEQE RKGLIAAICAGPTALLAHE+GFG
Sbjct: 61 AKTQGPYDVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGPTALLAHEVGFG 120
Query: 596 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALAGKEVADQ 775
KVTTHPLAKDKMMNGSHYSYSE+RVEKDGLILTSRGPGTSFEFALAIVEAL GK++A+Q
Sbjct: 121 CKVTTHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQ 180
Query: 776 VKAPLVLRD 802
VKAPLVL+D
Sbjct: 181 VKAPLVLKD 189
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,121,189
Number of extensions: 807570
Number of successful extensions: 4171
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4144
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007758
(1015 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116849.1| protein DJ-1 [Homo sapiens]. 355 5e-98
Alignment gi|NP_009193.2| protein DJ-1 [Homo sapiens]. 355 5e-98
>ref|NP_001116849.1| protein DJ-1 [Homo sapiens].
Length = 189
Score = 355 bits (910), Expect = 5e-98
Identities = 182/189 (96%), Positives = 185/189 (97%)
Frame = +2
Query: 236 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 415
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED
Sbjct: 1 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 60
Query: 416 AKKEGPYDVVVLPGGNLGAQNLSESAAVKDILKEQEKRKGLIAAICAGPTALLAHEIGFG 595
AKKEGPYDVVVLPGGNLGAQNLSESAAVK+ILKEQE RKGLIAAICAGPTALLAHEIGFG
Sbjct: 61 AKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG 120
Query: 596 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALAGKEVADQ 775
SKVTTHPLAKDKMMNG HY+YSENRVEKDGLILTSRGPGTSFEFALAIVEAL GKEVA Q
Sbjct: 121 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ 180
Query: 776 VKAPLVLRD 802
VKAPLVL+D
Sbjct: 181 VKAPLVLKD 189
>ref|NP_009193.2| protein DJ-1 [Homo sapiens].
Length = 189
Score = 355 bits (910), Expect = 5e-98
Identities = 182/189 (96%), Positives = 185/189 (97%)
Frame = +2
Query: 236 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 415
MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED
Sbjct: 1 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLED 60
Query: 416 AKKEGPYDVVVLPGGNLGAQNLSESAAVKDILKEQEKRKGLIAAICAGPTALLAHEIGFG 595
AKKEGPYDVVVLPGGNLGAQNLSESAAVK+ILKEQE RKGLIAAICAGPTALLAHEIGFG
Sbjct: 61 AKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFG 120
Query: 596 SKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALAIVEALAGKEVADQ 775
SKVTTHPLAKDKMMNG HY+YSENRVEKDGLILTSRGPGTSFEFALAIVEAL GKEVA Q
Sbjct: 121 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ 180
Query: 776 VKAPLVLRD 802
VKAPLVL+D
Sbjct: 181 VKAPLVLKD 189
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,895,714
Number of extensions: 974857
Number of successful extensions: 5200
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5173
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007758
(1015 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 264 9e-68
>Sscrofa_Chr06
|| Length = 157765593
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 75 gactgaggccagagcctgggggcacgcgtgcgtactcgggtagattcccgtttagtccgg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63033978 gactgaggccagagcctgggggcacgcgtgcgtactcgggtagattcccgtttagtccgg 63033919
Query: 135 ttctggcccagttgtcctcgcagggaccagaacgggccgaagcgctgcgtctgcgggaag 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63033918 ttctggcccagttgtcctcgcagggaccagaacgggccgaagcgctgcgtctgcgggaag 63033859
Query: 195 aagcgaggttcag 207
|||||||||||||
Sbjct: 63033858 aagcgaggttcag 63033846
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 205 cagttaagtcttcagaaaatacaacataagaatggcttctaaaagggctctggtcatcct 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63032839 cagttaagtcttcagaaaatacaacataagaatggcttctaaaagggctctggtcatcct 63032780
Query: 265 ggctaaaggagcagaggagatggagacggttattcctgtagatgtcatgagacgagctgg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63032779 ggctaaaggagcagaggagatggagacggttattcctgtagatgtcatgagacgagctgg 63032720
Query: 325 a 325
|
Sbjct: 63032719 a 63032719
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 326 attaaggtcaccgttgcaggcctggctggaaaagatccggtgcagtgtagccgtgatgtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63030678 attaaggtcaccgttgcaggcctggctggaaaagatccggtgcagtgtagccgtgatgtt 63030619
Query: 386 gtcatttgtcccgacgccagcctggaagatgccaaaaaagagg 428
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63030618 gtcatttgtcccgacgccagcctggaagatgccaaaaaagagg 63030576
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 556 aggtcccacggctctgttggctcatgagatcggttttggaagtaaagttacgacgcaccc 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63023871 aggtcccacggctctgttggctcatgagatcggttttggaagtaaagttacgacgcaccc 63023812
Query: 616 acttgctaaagacaagatgatgaacggaagt 646
|||||||||||||||||||||||||||||||
Sbjct: 63023811 acttgctaaagacaagatgatgaacggaagt 63023781
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 486 agtctgctgctgtgaaggacatcctgaaggagcaggagaagaggaagggcctcatagcag 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63027654 agtctgctgctgtgaaggacatcctgaaggagcaggagaagaggaagggcctcatagcag 63027595
Query: 546 ccatctgtgcaggt 559
||||||||||||||
Sbjct: 63027594 ccatctgtgcaggt 63027581
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 426 agggaccttatgacgtggtggttctgccgggaggcaatctgggtgcacagaatttatcgg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63028829 agggaccttatgacgtggtggttctgccgggaggcaatctgggtgcacagaatttatcgg 63028770
Query: 486 ag 487
||
Sbjct: 63028769 ag 63028768
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,625,865
Number of extensions: 154
Number of successful extensions: 154
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 6
Length of query: 1015
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 994
Effective length of database: 2,808,413,156
Effective search space: 2791562677064
Effective search space used: 2791562677064
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)