Animal-Genome cDNA 20110601C-007764


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007764
         (1006 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001077187.1| RILP-like protein 2 [Bos taurus].                 333   1e-91
Alignment   gi|NP_001068694.1| RILP-like protein 1 [Bos taurus].                  74   3e-13

>ref|NP_001077187.1| RILP-like protein 2 [Bos taurus].
          Length = 206

 Score =  333 bits (854), Expect = 1e-91
 Identities = 171/183 (93%), Positives = 173/183 (94%)
 Frame = +1

Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
           LGKSP QLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE
Sbjct: 24  LGKSPLQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 83

Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
           LRMERDNLR EVEGLRREGSAAG EVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL
Sbjct: 84  LRMERDNLRKEVEGLRREGSAAGPEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 143

Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKLFSFGSG 681
           KSQLLV QEELQCYKSGLIPPREGPGGRREK+ L  R +NA SNKEEKTIIRKLFSF SG
Sbjct: 144 KSQLLVVQEELQCYKSGLIPPREGPGGRREKEALFPRGSNANSNKEEKTIIRKLFSFRSG 203

Query: 682 KQT 690
           KQT
Sbjct: 204 KQT 206


>ref|NP_001068694.1| RILP-like protein 1 [Bos taurus].
          Length = 403

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 68/189 (35%), Positives = 100/189 (52%), Gaps = 17/189 (8%)
 Frame = +1

Query: 163 LTAEDVYDISYVMGRELMALGSD--PRVTQLQFKIVRVLEMLETLVNEGNLTVEE----- 321
           L  EDV  +     R LM +  D   RVT ++ +   ++E    L  E +L  +E     
Sbjct: 186 LKNEDVEALQQQQTR-LMKINHDLRHRVTVVEAQGKALIEQKVEL--EADLQTKEQEMGS 242

Query: 322 LRMERDNLRTEVEG-LRREG-----SAAGGEVNLGP-DKMVVDLTDPNRPRFTLQELRDV 480
           LR E   LR  ++G L + G     +  GGE  +   +K+ +DL DPNRPRFTLQELRDV
Sbjct: 243 LRAELGKLRERLQGELNQNGEEEPVAELGGEECVSEAEKVAMDLKDPNRPRFTLQELRDV 302

Query: 481 LQERNKLKSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVAR---ANNARSNKEEKTI 651
           L ERN+LKS++ + QEEL  YKS  I          E++  + +     + R + + ++ 
Sbjct: 303 LHERNELKSKVFLLQEELAYYKSEEI----------EEENQIPQPPPIAHPRMSPQPESG 352

Query: 652 IRKLFSFGS 678
           I++LFSF S
Sbjct: 353 IKRLFSFFS 361


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,461,133
Number of extensions: 774131
Number of successful extensions: 3818
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3798
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,273,310
Effective search space: 3311407920
Effective search space used: 3311407920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007764
         (1006 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853226.1| PREDICTED: similar to C32A3.3a [Canis familiari...   309   2e-84
Alignment   gi|XP_534647.2| PREDICTED: similar to CG11448-PA [Canis familia...    74   2e-13

>ref|XP_853226.1| PREDICTED: similar to C32A3.3a [Canis familiaris].
          Length = 199

 Score =  309 bits (792), Expect = 2e-84
 Identities = 159/174 (91%), Positives = 165/174 (94%)
 Frame = +1

Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
           LGKSPFQLTAEDVYDISYV+GRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNL VEE
Sbjct: 26  LGKSPFQLTAEDVYDISYVIGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLVVEE 85

Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
           LRMERD+LR EVEGLR EGSAA  EVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL
Sbjct: 86  LRMERDSLRKEVEGLRTEGSAAVQEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 145

Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL 663
           KSQL+V QEELQCYKSGLIPPREG GGRR+KDTLV+R +NA SNKEEKTIIRKL
Sbjct: 146 KSQLMVVQEELQCYKSGLIPPREGLGGRRQKDTLVSRTSNASSNKEEKTIIRKL 199


>ref|XP_534647.2| PREDICTED: similar to CG11448-PA [Canis familiaris].
          Length = 411

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 59/143 (41%), Positives = 81/143 (56%), Gaps = 14/143 (9%)
 Frame = +1

Query: 163 LTAEDVYDISYVMGRELMALGSD--PRVTQLQFKIVRVLEMLETLVNEGNLTVEE----- 321
           L  EDV  +     R LM +  D   RVT ++ +   ++E    L  E +L  +E     
Sbjct: 186 LKNEDVEALQQQQTR-LMKINHDLRHRVTVVEAQGKALIEQKVEL--EADLQTKEQEMGS 242

Query: 322 LRMERDNLRTEVEG-LRREG-----SAAGGEVNLGP-DKMVVDLTDPNRPRFTLQELRDV 480
           LR E   LR  ++G L + G     +  GGE ++   +K+ +DL DPNRPRFTLQELRDV
Sbjct: 243 LRAELGKLRERLQGELSQNGEEEPQTEPGGEESISEAEKVAMDLKDPNRPRFTLQELRDV 302

Query: 481 LQERNKLKSQLLVAQEELQCYKS 549
           L ERN+LKS++ + QEEL  YKS
Sbjct: 303 LHERNELKSKVFLLQEELAYYKS 325


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,811,994
Number of extensions: 797359
Number of successful extensions: 4008
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3994
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 232
Effective length of database: 15,440,896
Effective search space: 3582287872
Effective search space used: 3582287872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007764
         (1006 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003359139.1| PREDICTED: RILP-like protein 2-like isoform ...   358   3e-99
Alignment   gi|XP_003132915.1| PREDICTED: RILP-like protein 2-like [Sus scr...   340   7e-94
Alignment   gi|XP_003359140.1| PREDICTED: RILP-like protein 2-like isoform ...   340   7e-94
Alignment   gi|XP_001925390.3| PREDICTED: RILP-like protein 1-like [Sus scr...    72   5e-13

>ref|XP_003359139.1| PREDICTED: RILP-like protein 2-like isoform 1 [Sus scrofa].
          Length = 204

 Score =  358 bits (919), Expect = 3e-99
 Identities = 183/183 (100%), Positives = 183/183 (100%)
 Frame = +1

Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
           LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE
Sbjct: 22  LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 81

Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
           LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL
Sbjct: 82  LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 141

Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKLFSFGSG 681
           KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKLFSFGSG
Sbjct: 142 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKLFSFGSG 201

Query: 682 KQT 690
           KQT
Sbjct: 202 KQT 204


>ref|XP_003132915.1| PREDICTED: RILP-like protein 2-like [Sus scrofa].
          Length = 227

 Score =  340 bits (872), Expect = 7e-94
 Identities = 174/174 (100%), Positives = 174/174 (100%)
 Frame = +1

Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
           LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE
Sbjct: 22  LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 81

Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
           LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL
Sbjct: 82  LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 141

Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL 663
           KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL
Sbjct: 142 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL 195


>ref|XP_003359140.1| PREDICTED: RILP-like protein 2-like isoform 2 [Sus scrofa].
          Length = 227

 Score =  340 bits (872), Expect = 7e-94
 Identities = 174/174 (100%), Positives = 174/174 (100%)
 Frame = +1

Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
           LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE
Sbjct: 22  LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 81

Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
           LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL
Sbjct: 82  LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 141

Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL 663
           KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL
Sbjct: 142 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL 195


>ref|XP_001925390.3| PREDICTED: RILP-like protein 1-like [Sus scrofa].
          Length = 399

 Score = 72.0 bits (175), Expect = 5e-13
 Identities = 59/143 (41%), Positives = 79/143 (55%), Gaps = 14/143 (9%)
 Frame = +1

Query: 163 LTAEDVYDISYVMGRELMALGSD--PRVTQLQFKIVRVLEMLETLVNEGNLTVEE----- 321
           L  EDV  +     R LM +  D   RVT ++ +   ++E    L  E +L  +E     
Sbjct: 186 LKNEDVEALQQQQTR-LMKINHDLRHRVTVVEAQGKALIEQKVEL--EADLQTKEQEMGS 242

Query: 322 LRMERDNLRTEVEG-LRREGSAA-----GGEVNLGP-DKMVVDLTDPNRPRFTLQELRDV 480
           LR E   LR  ++G L + G        GGE  +   +K+ +DL DPNRPRFTLQELRDV
Sbjct: 243 LRAELGKLRERLQGELSQNGDEEPEMEPGGEECVSEAEKVAMDLKDPNRPRFTLQELRDV 302

Query: 481 LQERNKLKSQLLVAQEELQCYKS 549
           L ERN+LKS++ + QEEL  YKS
Sbjct: 303 LHERNELKSKVFLLQEELAYYKS 325


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,958,773
Number of extensions: 498885
Number of successful extensions: 2573
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2560
Number of HSP's successfully gapped: 4
Length of query: 335
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,879,129
Effective search space: 2095474444
Effective search space used: 2095474444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007764
         (1006 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_084535.1| RILP-like protein 2 [Mus musculus].                  284   7e-77
Alignment   gi|NP_067405.1| RILP-like protein 1 [Mus musculus].                   74   1e-13

>ref|NP_084535.1| RILP-like protein 2 [Mus musculus].
          Length = 197

 Score =  284 bits (727), Expect = 7e-77
 Identities = 145/183 (79%), Positives = 162/183 (88%)
 Frame = +1

Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
           L KSP QLT +DVYDISYV+GRELMALGSDPRVT+LQFKIVRV+EMLETLVNEG+L VEE
Sbjct: 19  LAKSPLQLTTDDVYDISYVVGRELMALGSDPRVTRLQFKIVRVMEMLETLVNEGSLAVEE 78

Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
           LRMERDNL+ EVEGLR+ G  +G +VNLGPDKMVVDLTDPNRPRFTLQELR+VLQERNKL
Sbjct: 79  LRMERDNLKQEVEGLRKAG-VSGAQVNLGPDKMVVDLTDPNRPRFTLQELREVLQERNKL 137

Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKLFSFGSG 681
           KSQLL+ QEELQCY+SGL+PPRE PGGRREKD +VA  N     KEE+TI++KLFSF SG
Sbjct: 138 KSQLLLVQEELQCYRSGLLPPRETPGGRREKDAVVAMGN---GEKEERTIMKKLFSFRSG 194

Query: 682 KQT 690
           K T
Sbjct: 195 KHT 197


>ref|NP_067405.1| RILP-like protein 1 [Mus musculus].
          Length = 406

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 67/192 (34%), Positives = 97/192 (50%), Gaps = 20/192 (10%)
 Frame = +1

Query: 163 LTAEDVYDISYVMGRELMALGSD--PRVTQLQFKIVRVLEMLETLVNEGNLTVEE----- 321
           L  EDV  +     R LM +  D   RVT ++ +   ++E    L  E +L  +E     
Sbjct: 186 LKNEDVEALQQQQTR-LMKINHDLRHRVTVVEAQGKALIEQKVEL--EADLQTKEQEMGS 242

Query: 322 LRMERDNLRTEVEGLRRE-GSAAGGEVNLGPD---------KMVVDLTDPNRPRFTLQEL 471
           LR E   LR  ++G   + G     E+   PD         K  +DL DPNRPRFTLQEL
Sbjct: 243 LRAELGKLRERLQGEHSQNGEEEEAEIQPQPDGEESISDAEKAALDLKDPNRPRFTLQEL 302

Query: 472 RDVLQERNKLKSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVAR---ANNARSNKEE 642
           RDVL ERN+LKS++ + QEEL  YKS  I          E++  + +     + R++ + 
Sbjct: 303 RDVLHERNELKSKVFLLQEELAYYKSEEI----------EEENRIPQPPPITHPRTSPQP 352

Query: 643 KTIIRKLFSFGS 678
           ++ I++LFSF S
Sbjct: 353 ESGIKRLFSFFS 364


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,893,407
Number of extensions: 650196
Number of successful extensions: 3122
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3108
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 233
Effective length of database: 12,553,887
Effective search space: 2925055671
Effective search space used: 2925055671
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007764
         (1006 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_659495.1| RILP-like protein 2 [Homo sapiens].                  310   2e-84
Alignment   gi|NP_847884.2| RILP-like protein 1 [Homo sapiens].                   73   4e-13

>ref|NP_659495.1| RILP-like protein 2 [Homo sapiens].
          Length = 211

 Score =  310 bits (793), Expect = 2e-84
 Identities = 156/183 (85%), Positives = 167/183 (91%)
 Frame = +1

Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
           LGKSPFQLTAEDVYDISY++GRELMALGSDPRVTQLQFK+VRVLEMLE LVNEG+L +EE
Sbjct: 29  LGKSPFQLTAEDVYDISYLLGRELMALGSDPRVTQLQFKVVRVLEMLEALVNEGSLALEE 88

Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
           L+MERD+LR EVEGLRR+   A GEVNLGP+KMVVDLTDPNRPRFTLQELRDVLQERNKL
Sbjct: 89  LKMERDHLRKEVEGLRRQSPPASGEVNLGPNKMVVDLTDPNRPRFTLQELRDVLQERNKL 148

Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKLFSFGSG 681
           KSQLLV QEELQCYKSGLIPPREGPGGRREKD +V  A NA  NKEEKTII+KLF F SG
Sbjct: 149 KSQLLVVQEELQCYKSGLIPPREGPGGRREKDAVVTSAKNAGRNKEEKTIIKKLFFFRSG 208

Query: 682 KQT 690
           KQT
Sbjct: 209 KQT 211


>ref|NP_847884.2| RILP-like protein 1 [Homo sapiens].
          Length = 403

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 14/186 (7%)
 Frame = +1

Query: 163 LTAEDVYDISYVMGRELMALGSD--PRVTQLQFKIVRVLEMLETLVNEGNLTVEE----- 321
           L  EDV  +     R LM +  D   RVT ++ +   ++E    L  E +L  +E     
Sbjct: 186 LKNEDVEALQQQQTR-LMKINHDLRHRVTVVEAQGKALIEQKVEL--EADLQTKEQEMGS 242

Query: 322 LRMERDNLRTEVEGLRR-------EGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDV 480
           LR E   LR  ++G          E    G E     +K+ +DL DPNRPRFTLQELRDV
Sbjct: 243 LRAELGKLRERLQGEHSQNGEEEPETEPVGEESISDAEKVAMDLKDPNRPRFTLQELRDV 302

Query: 481 LQERNKLKSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRK 660
           L ERN+LKS++ + QEEL  YKS  +        R  +   +A   + R++ + ++ I++
Sbjct: 303 LHERNELKSKVFLLQEELAYYKSEEMEEE----NRIPQPPPIA---HPRTSPQPESGIKR 355

Query: 661 LFSFGS 678
           LFSF S
Sbjct: 356 LFSFFS 361


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,073,360
Number of extensions: 776713
Number of successful extensions: 3895
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3882
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,901,872
Effective search space: 3457234304
Effective search space used: 3457234304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007764
         (1006 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         660   0.0  

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  660 bits (333), Expect = 0.0
 Identities = 343/345 (99%), Gaps = 1/345 (0%)
 Strand = Plus / Plus

                                                                            
Query: 663      gttctctttcggatcagggaagcagacatagatctgaggccacgactaaattctcagact 722
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31210945 gttctctttcggatcagggaagcagacatagatctgaggccacgactaaattctcagact 31211004

                                                                            
Query: 723      cagaaaacagctcacaaagacaacttccaaaatcatctctcagtgccacgcgtacccact 782
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31211005 cagaaaacagctcacaaagacaacttccaaaatcatctctcagtgccacgcgtacccact 31211064

                                                                            
Query: 783      gcacatgctgctttgtttctcctcaaagctgtctgaggaggaaggggaaacgttttctcc 842
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31211065 gcacatgctgctttgtttctcctcaaagctgtctgaggaggaaggggaaacgttttctcc 31211124

                                                                            
Query: 843      ctagctgcagaactggacacccttgaaggctgggccagagcagatgaagtgacccaaaga 902
                ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 31211125 ctagctgcagaactggacacccttgaaggctgggccagagcagatgaagtgacacaaaga 31211184

                                                                            
Query: 903      aaacagaacgaaagtgccagggggcccacctgcagccccacttc-accacccagggggcc 961
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 31211185 aaacagaacgaaagtgccagggggcccacctgcagccccacttcaaccacccagggggcc 31211244

                                                             
Query: 962      tccagaatgcagatgcacgttctgcttctcctggcccatggatga 1006
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31211245 tccagaatgcagatgcacgttctgcttctcctggcccatggatga 31211289



 Score =  517 bits (261), Expect = e-144
 Identities = 261/261 (100%)
 Strand = Plus / Plus

                                                                            
Query: 140      ctctgggcaagagccccttccagctgacagccgaagacgtatatgacatctcttacgtga 199
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31187941 ctctgggcaagagccccttccagctgacagccgaagacgtatatgacatctcttacgtga 31188000

                                                                            
Query: 200      tgggccgagagctgatggccctgggcagcgacccccgggtgacacagctgcagttcaaga 259
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31188001 tgggccgagagctgatggccctgggcagcgacccccgggtgacacagctgcagttcaaga 31188060

                                                                            
Query: 260      tcgtccgtgttctggagatgctggagacgctggtgaatgagggcaacttgacggtggagg 319
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31188061 tcgtccgtgttctggagatgctggagacgctggtgaatgagggcaacttgacggtggagg 31188120

                                                                            
Query: 320      agctgagaatggagcgggacaacctcaggacggaggtggaggggctgcggagagagggct 379
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31188121 agctgagaatggagcgggacaacctcaggacggaggtggaggggctgcggagagagggct 31188180

                                     
Query: 380      ccgcggccggcggagaggtga 400
                |||||||||||||||||||||
Sbjct: 31188181 ccgcggccggcggagaggtga 31188201



 Score =  305 bits (154), Expect = 2e-80
 Identities = 154/154 (100%)
 Strand = Plus / Plus

                                                                            
Query: 395      aggtgaacctgggaccagacaaaatggtggttgacctgacagatcccaaccgaccacgct 454
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31197518 aggtgaacctgggaccagacaaaatggtggttgacctgacagatcccaaccgaccacgct 31197577

                                                                            
Query: 455      ttactctgcaggagctgagggatgtgctacaggagcgcaacaaactcaagtcgcagctgc 514
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31197578 ttactctgcaggagctgagggatgtgctacaggagcgcaacaaactcaagtcgcagctgc 31197637

                                                  
Query: 515      tggtggcacaggaggagctgcagtgctataagag 548
                ||||||||||||||||||||||||||||||||||
Sbjct: 31197638 tggtggcacaggaggagctgcagtgctataagag 31197671



 Score =  234 bits (118), Expect = 8e-59
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                            
Query: 547      agtggcctgattccaccaagagaaggcccaggaggaagaagagaaaaagatactctggtt 606
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31205593 agtggcctgattccaccaagagaaggcccaggaggaagaagagaaaaagatactctggtt 31205652

                                                                          
Query: 607      gctcgggccaacaatgccaggagtaacaaggaggagaagacaatcataaggaagctgt 664
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31205653 gctcgggccaacaatgccaggagtaacaaggaggagaagacaatcataaggaagctgt 31205710



 Score =  159 bits (80), Expect = 4e-36
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        ttattgcgccgggaggaagttggacatttagagactcttgagaaggcagctacggaggct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31187802 ttattgcgccgggaggaagttggacatttagagactcttgagaaggcagctacggaggct 31187861

                                    
Query: 61       gcagaggtctggcaggccat 80
                ||||||||||||||||||||
Sbjct: 31187862 gcagaggtctggcaggccat 31187881


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,576,453
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 5
Length of query: 1006
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 985
Effective length of database: 2,808,413,156
Effective search space: 2766286958660
Effective search space used: 2766286958660
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)