Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007764
(1006 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077187.1| RILP-like protein 2 [Bos taurus]. 333 1e-91
Alignment gi|NP_001068694.1| RILP-like protein 1 [Bos taurus]. 74 3e-13
>ref|NP_001077187.1| RILP-like protein 2 [Bos taurus].
Length = 206
Score = 333 bits (854), Expect = 1e-91
Identities = 171/183 (93%), Positives = 173/183 (94%)
Frame = +1
Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
LGKSP QLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE
Sbjct: 24 LGKSPLQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 83
Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
LRMERDNLR EVEGLRREGSAAG EVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL
Sbjct: 84 LRMERDNLRKEVEGLRREGSAAGPEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 143
Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKLFSFGSG 681
KSQLLV QEELQCYKSGLIPPREGPGGRREK+ L R +NA SNKEEKTIIRKLFSF SG
Sbjct: 144 KSQLLVVQEELQCYKSGLIPPREGPGGRREKEALFPRGSNANSNKEEKTIIRKLFSFRSG 203
Query: 682 KQT 690
KQT
Sbjct: 204 KQT 206
>ref|NP_001068694.1| RILP-like protein 1 [Bos taurus].
Length = 403
Score = 73.6 bits (179), Expect = 3e-13
Identities = 68/189 (35%), Positives = 100/189 (52%), Gaps = 17/189 (8%)
Frame = +1
Query: 163 LTAEDVYDISYVMGRELMALGSD--PRVTQLQFKIVRVLEMLETLVNEGNLTVEE----- 321
L EDV + R LM + D RVT ++ + ++E L E +L +E
Sbjct: 186 LKNEDVEALQQQQTR-LMKINHDLRHRVTVVEAQGKALIEQKVEL--EADLQTKEQEMGS 242
Query: 322 LRMERDNLRTEVEG-LRREG-----SAAGGEVNLGP-DKMVVDLTDPNRPRFTLQELRDV 480
LR E LR ++G L + G + GGE + +K+ +DL DPNRPRFTLQELRDV
Sbjct: 243 LRAELGKLRERLQGELNQNGEEEPVAELGGEECVSEAEKVAMDLKDPNRPRFTLQELRDV 302
Query: 481 LQERNKLKSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVAR---ANNARSNKEEKTI 651
L ERN+LKS++ + QEEL YKS I E++ + + + R + + ++
Sbjct: 303 LHERNELKSKVFLLQEELAYYKSEEI----------EEENQIPQPPPIAHPRMSPQPESG 352
Query: 652 IRKLFSFGS 678
I++LFSF S
Sbjct: 353 IKRLFSFFS 361
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,461,133
Number of extensions: 774131
Number of successful extensions: 3818
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3798
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,273,310
Effective search space: 3311407920
Effective search space used: 3311407920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007764
(1006 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853226.1| PREDICTED: similar to C32A3.3a [Canis familiari... 309 2e-84
Alignment gi|XP_534647.2| PREDICTED: similar to CG11448-PA [Canis familia... 74 2e-13
>ref|XP_853226.1| PREDICTED: similar to C32A3.3a [Canis familiaris].
Length = 199
Score = 309 bits (792), Expect = 2e-84
Identities = 159/174 (91%), Positives = 165/174 (94%)
Frame = +1
Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
LGKSPFQLTAEDVYDISYV+GRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNL VEE
Sbjct: 26 LGKSPFQLTAEDVYDISYVIGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLVVEE 85
Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
LRMERD+LR EVEGLR EGSAA EVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL
Sbjct: 86 LRMERDSLRKEVEGLRTEGSAAVQEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 145
Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL 663
KSQL+V QEELQCYKSGLIPPREG GGRR+KDTLV+R +NA SNKEEKTIIRKL
Sbjct: 146 KSQLMVVQEELQCYKSGLIPPREGLGGRRQKDTLVSRTSNASSNKEEKTIIRKL 199
>ref|XP_534647.2| PREDICTED: similar to CG11448-PA [Canis familiaris].
Length = 411
Score = 74.3 bits (181), Expect = 2e-13
Identities = 59/143 (41%), Positives = 81/143 (56%), Gaps = 14/143 (9%)
Frame = +1
Query: 163 LTAEDVYDISYVMGRELMALGSD--PRVTQLQFKIVRVLEMLETLVNEGNLTVEE----- 321
L EDV + R LM + D RVT ++ + ++E L E +L +E
Sbjct: 186 LKNEDVEALQQQQTR-LMKINHDLRHRVTVVEAQGKALIEQKVEL--EADLQTKEQEMGS 242
Query: 322 LRMERDNLRTEVEG-LRREG-----SAAGGEVNLGP-DKMVVDLTDPNRPRFTLQELRDV 480
LR E LR ++G L + G + GGE ++ +K+ +DL DPNRPRFTLQELRDV
Sbjct: 243 LRAELGKLRERLQGELSQNGEEEPQTEPGGEESISEAEKVAMDLKDPNRPRFTLQELRDV 302
Query: 481 LQERNKLKSQLLVAQEELQCYKS 549
L ERN+LKS++ + QEEL YKS
Sbjct: 303 LHERNELKSKVFLLQEELAYYKS 325
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,811,994
Number of extensions: 797359
Number of successful extensions: 4008
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3994
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 232
Effective length of database: 15,440,896
Effective search space: 3582287872
Effective search space used: 3582287872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007764
(1006 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359139.1| PREDICTED: RILP-like protein 2-like isoform ... 358 3e-99
Alignment gi|XP_003132915.1| PREDICTED: RILP-like protein 2-like [Sus scr... 340 7e-94
Alignment gi|XP_003359140.1| PREDICTED: RILP-like protein 2-like isoform ... 340 7e-94
Alignment gi|XP_001925390.3| PREDICTED: RILP-like protein 1-like [Sus scr... 72 5e-13
>ref|XP_003359139.1| PREDICTED: RILP-like protein 2-like isoform 1 [Sus scrofa].
Length = 204
Score = 358 bits (919), Expect = 3e-99
Identities = 183/183 (100%), Positives = 183/183 (100%)
Frame = +1
Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE
Sbjct: 22 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 81
Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL
Sbjct: 82 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 141
Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKLFSFGSG 681
KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKLFSFGSG
Sbjct: 142 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKLFSFGSG 201
Query: 682 KQT 690
KQT
Sbjct: 202 KQT 204
>ref|XP_003132915.1| PREDICTED: RILP-like protein 2-like [Sus scrofa].
Length = 227
Score = 340 bits (872), Expect = 7e-94
Identities = 174/174 (100%), Positives = 174/174 (100%)
Frame = +1
Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE
Sbjct: 22 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 81
Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL
Sbjct: 82 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 141
Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL 663
KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL
Sbjct: 142 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL 195
>ref|XP_003359140.1| PREDICTED: RILP-like protein 2-like isoform 2 [Sus scrofa].
Length = 227
Score = 340 bits (872), Expect = 7e-94
Identities = 174/174 (100%), Positives = 174/174 (100%)
Frame = +1
Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE
Sbjct: 22 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 81
Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL
Sbjct: 82 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 141
Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL 663
KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL
Sbjct: 142 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKL 195
>ref|XP_001925390.3| PREDICTED: RILP-like protein 1-like [Sus scrofa].
Length = 399
Score = 72.0 bits (175), Expect = 5e-13
Identities = 59/143 (41%), Positives = 79/143 (55%), Gaps = 14/143 (9%)
Frame = +1
Query: 163 LTAEDVYDISYVMGRELMALGSD--PRVTQLQFKIVRVLEMLETLVNEGNLTVEE----- 321
L EDV + R LM + D RVT ++ + ++E L E +L +E
Sbjct: 186 LKNEDVEALQQQQTR-LMKINHDLRHRVTVVEAQGKALIEQKVEL--EADLQTKEQEMGS 242
Query: 322 LRMERDNLRTEVEG-LRREGSAA-----GGEVNLGP-DKMVVDLTDPNRPRFTLQELRDV 480
LR E LR ++G L + G GGE + +K+ +DL DPNRPRFTLQELRDV
Sbjct: 243 LRAELGKLRERLQGELSQNGDEEPEMEPGGEECVSEAEKVAMDLKDPNRPRFTLQELRDV 302
Query: 481 LQERNKLKSQLLVAQEELQCYKS 549
L ERN+LKS++ + QEEL YKS
Sbjct: 303 LHERNELKSKVFLLQEELAYYKS 325
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,958,773
Number of extensions: 498885
Number of successful extensions: 2573
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2560
Number of HSP's successfully gapped: 4
Length of query: 335
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,879,129
Effective search space: 2095474444
Effective search space used: 2095474444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007764
(1006 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084535.1| RILP-like protein 2 [Mus musculus]. 284 7e-77
Alignment gi|NP_067405.1| RILP-like protein 1 [Mus musculus]. 74 1e-13
>ref|NP_084535.1| RILP-like protein 2 [Mus musculus].
Length = 197
Score = 284 bits (727), Expect = 7e-77
Identities = 145/183 (79%), Positives = 162/183 (88%)
Frame = +1
Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
L KSP QLT +DVYDISYV+GRELMALGSDPRVT+LQFKIVRV+EMLETLVNEG+L VEE
Sbjct: 19 LAKSPLQLTTDDVYDISYVVGRELMALGSDPRVTRLQFKIVRVMEMLETLVNEGSLAVEE 78
Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
LRMERDNL+ EVEGLR+ G +G +VNLGPDKMVVDLTDPNRPRFTLQELR+VLQERNKL
Sbjct: 79 LRMERDNLKQEVEGLRKAG-VSGAQVNLGPDKMVVDLTDPNRPRFTLQELREVLQERNKL 137
Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKLFSFGSG 681
KSQLL+ QEELQCY+SGL+PPRE PGGRREKD +VA N KEE+TI++KLFSF SG
Sbjct: 138 KSQLLLVQEELQCYRSGLLPPRETPGGRREKDAVVAMGN---GEKEERTIMKKLFSFRSG 194
Query: 682 KQT 690
K T
Sbjct: 195 KHT 197
>ref|NP_067405.1| RILP-like protein 1 [Mus musculus].
Length = 406
Score = 74.3 bits (181), Expect = 1e-13
Identities = 67/192 (34%), Positives = 97/192 (50%), Gaps = 20/192 (10%)
Frame = +1
Query: 163 LTAEDVYDISYVMGRELMALGSD--PRVTQLQFKIVRVLEMLETLVNEGNLTVEE----- 321
L EDV + R LM + D RVT ++ + ++E L E +L +E
Sbjct: 186 LKNEDVEALQQQQTR-LMKINHDLRHRVTVVEAQGKALIEQKVEL--EADLQTKEQEMGS 242
Query: 322 LRMERDNLRTEVEGLRRE-GSAAGGEVNLGPD---------KMVVDLTDPNRPRFTLQEL 471
LR E LR ++G + G E+ PD K +DL DPNRPRFTLQEL
Sbjct: 243 LRAELGKLRERLQGEHSQNGEEEEAEIQPQPDGEESISDAEKAALDLKDPNRPRFTLQEL 302
Query: 472 RDVLQERNKLKSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVAR---ANNARSNKEE 642
RDVL ERN+LKS++ + QEEL YKS I E++ + + + R++ +
Sbjct: 303 RDVLHERNELKSKVFLLQEELAYYKSEEI----------EEENRIPQPPPITHPRTSPQP 352
Query: 643 KTIIRKLFSFGS 678
++ I++LFSF S
Sbjct: 353 ESGIKRLFSFFS 364
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,893,407
Number of extensions: 650196
Number of successful extensions: 3122
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3108
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 233
Effective length of database: 12,553,887
Effective search space: 2925055671
Effective search space used: 2925055671
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007764
(1006 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659495.1| RILP-like protein 2 [Homo sapiens]. 310 2e-84
Alignment gi|NP_847884.2| RILP-like protein 1 [Homo sapiens]. 73 4e-13
>ref|NP_659495.1| RILP-like protein 2 [Homo sapiens].
Length = 211
Score = 310 bits (793), Expect = 2e-84
Identities = 156/183 (85%), Positives = 167/183 (91%)
Frame = +1
Query: 142 LGKSPFQLTAEDVYDISYVMGRELMALGSDPRVTQLQFKIVRVLEMLETLVNEGNLTVEE 321
LGKSPFQLTAEDVYDISY++GRELMALGSDPRVTQLQFK+VRVLEMLE LVNEG+L +EE
Sbjct: 29 LGKSPFQLTAEDVYDISYLLGRELMALGSDPRVTQLQFKVVRVLEMLEALVNEGSLALEE 88
Query: 322 LRMERDNLRTEVEGLRREGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKL 501
L+MERD+LR EVEGLRR+ A GEVNLGP+KMVVDLTDPNRPRFTLQELRDVLQERNKL
Sbjct: 89 LKMERDHLRKEVEGLRRQSPPASGEVNLGPNKMVVDLTDPNRPRFTLQELRDVLQERNKL 148
Query: 502 KSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRKLFSFGSG 681
KSQLLV QEELQCYKSGLIPPREGPGGRREKD +V A NA NKEEKTII+KLF F SG
Sbjct: 149 KSQLLVVQEELQCYKSGLIPPREGPGGRREKDAVVTSAKNAGRNKEEKTIIKKLFFFRSG 208
Query: 682 KQT 690
KQT
Sbjct: 209 KQT 211
>ref|NP_847884.2| RILP-like protein 1 [Homo sapiens].
Length = 403
Score = 73.2 bits (178), Expect = 4e-13
Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 14/186 (7%)
Frame = +1
Query: 163 LTAEDVYDISYVMGRELMALGSD--PRVTQLQFKIVRVLEMLETLVNEGNLTVEE----- 321
L EDV + R LM + D RVT ++ + ++E L E +L +E
Sbjct: 186 LKNEDVEALQQQQTR-LMKINHDLRHRVTVVEAQGKALIEQKVEL--EADLQTKEQEMGS 242
Query: 322 LRMERDNLRTEVEGLRR-------EGSAAGGEVNLGPDKMVVDLTDPNRPRFTLQELRDV 480
LR E LR ++G E G E +K+ +DL DPNRPRFTLQELRDV
Sbjct: 243 LRAELGKLRERLQGEHSQNGEEEPETEPVGEESISDAEKVAMDLKDPNRPRFTLQELRDV 302
Query: 481 LQERNKLKSQLLVAQEELQCYKSGLIPPREGPGGRREKDTLVARANNARSNKEEKTIIRK 660
L ERN+LKS++ + QEEL YKS + R + +A + R++ + ++ I++
Sbjct: 303 LHERNELKSKVFLLQEELAYYKSEEMEEE----NRIPQPPPIA---HPRTSPQPESGIKR 355
Query: 661 LFSFGS 678
LFSF S
Sbjct: 356 LFSFFS 361
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,073,360
Number of extensions: 776713
Number of successful extensions: 3895
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3882
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,901,872
Effective search space: 3457234304
Effective search space used: 3457234304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007764
(1006 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 660 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 660 bits (333), Expect = 0.0
Identities = 343/345 (99%), Gaps = 1/345 (0%)
Strand = Plus / Plus
Query: 663 gttctctttcggatcagggaagcagacatagatctgaggccacgactaaattctcagact 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31210945 gttctctttcggatcagggaagcagacatagatctgaggccacgactaaattctcagact 31211004
Query: 723 cagaaaacagctcacaaagacaacttccaaaatcatctctcagtgccacgcgtacccact 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31211005 cagaaaacagctcacaaagacaacttccaaaatcatctctcagtgccacgcgtacccact 31211064
Query: 783 gcacatgctgctttgtttctcctcaaagctgtctgaggaggaaggggaaacgttttctcc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31211065 gcacatgctgctttgtttctcctcaaagctgtctgaggaggaaggggaaacgttttctcc 31211124
Query: 843 ctagctgcagaactggacacccttgaaggctgggccagagcagatgaagtgacccaaaga 902
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 31211125 ctagctgcagaactggacacccttgaaggctgggccagagcagatgaagtgacacaaaga 31211184
Query: 903 aaacagaacgaaagtgccagggggcccacctgcagccccacttc-accacccagggggcc 961
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 31211185 aaacagaacgaaagtgccagggggcccacctgcagccccacttcaaccacccagggggcc 31211244
Query: 962 tccagaatgcagatgcacgttctgcttctcctggcccatggatga 1006
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31211245 tccagaatgcagatgcacgttctgcttctcctggcccatggatga 31211289
Score = 517 bits (261), Expect = e-144
Identities = 261/261 (100%)
Strand = Plus / Plus
Query: 140 ctctgggcaagagccccttccagctgacagccgaagacgtatatgacatctcttacgtga 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31187941 ctctgggcaagagccccttccagctgacagccgaagacgtatatgacatctcttacgtga 31188000
Query: 200 tgggccgagagctgatggccctgggcagcgacccccgggtgacacagctgcagttcaaga 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31188001 tgggccgagagctgatggccctgggcagcgacccccgggtgacacagctgcagttcaaga 31188060
Query: 260 tcgtccgtgttctggagatgctggagacgctggtgaatgagggcaacttgacggtggagg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31188061 tcgtccgtgttctggagatgctggagacgctggtgaatgagggcaacttgacggtggagg 31188120
Query: 320 agctgagaatggagcgggacaacctcaggacggaggtggaggggctgcggagagagggct 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31188121 agctgagaatggagcgggacaacctcaggacggaggtggaggggctgcggagagagggct 31188180
Query: 380 ccgcggccggcggagaggtga 400
|||||||||||||||||||||
Sbjct: 31188181 ccgcggccggcggagaggtga 31188201
Score = 305 bits (154), Expect = 2e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 395 aggtgaacctgggaccagacaaaatggtggttgacctgacagatcccaaccgaccacgct 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31197518 aggtgaacctgggaccagacaaaatggtggttgacctgacagatcccaaccgaccacgct 31197577
Query: 455 ttactctgcaggagctgagggatgtgctacaggagcgcaacaaactcaagtcgcagctgc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31197578 ttactctgcaggagctgagggatgtgctacaggagcgcaacaaactcaagtcgcagctgc 31197637
Query: 515 tggtggcacaggaggagctgcagtgctataagag 548
||||||||||||||||||||||||||||||||||
Sbjct: 31197638 tggtggcacaggaggagctgcagtgctataagag 31197671
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 547 agtggcctgattccaccaagagaaggcccaggaggaagaagagaaaaagatactctggtt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31205593 agtggcctgattccaccaagagaaggcccaggaggaagaagagaaaaagatactctggtt 31205652
Query: 607 gctcgggccaacaatgccaggagtaacaaggaggagaagacaatcataaggaagctgt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31205653 gctcgggccaacaatgccaggagtaacaaggaggagaagacaatcataaggaagctgt 31205710
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ttattgcgccgggaggaagttggacatttagagactcttgagaaggcagctacggaggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31187802 ttattgcgccgggaggaagttggacatttagagactcttgagaaggcagctacggaggct 31187861
Query: 61 gcagaggtctggcaggccat 80
||||||||||||||||||||
Sbjct: 31187862 gcagaggtctggcaggccat 31187881
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,576,453
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 5
Length of query: 1006
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 985
Effective length of database: 2,808,413,156
Effective search space: 2766286958660
Effective search space used: 2766286958660
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)