Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007765
(1521 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073812.1| zinc finger matrin-type protein 2 [Bos tauru... 296 3e-80
>ref|NP_001073812.1| zinc finger matrin-type protein 2 [Bos taurus].
Length = 199
Score = 296 bits (758), Expect = 3e-80
Identities = 153/199 (76%), Positives = 153/199 (76%)
Frame = +2
Query: 20 MASGSGAKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES 199
MASGSG KNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES
Sbjct: 1 MASGSGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES 60
Query: 200 KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD 379
KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD
Sbjct: 61 KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD 120
Query: 380 QVKKRFEVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTFEED 559
QVKKRFEVN LTFEED
Sbjct: 121 QVKKRFEVNKKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEED 180
Query: 560 DEMAAVMGFSGFGSTKKSY 616
DEMAAVMGFSGFGSTKKSY
Sbjct: 181 DEMAAVMGFSGFGSTKKSY 199
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,826,075
Number of extensions: 1369879
Number of successful extensions: 4286
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4281
Number of HSP's successfully gapped: 2
Length of query: 507
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 400
Effective length of database: 14,140,958
Effective search space: 5656383200
Effective search space used: 5656383200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007765
(1521 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848938.1| PREDICTED: similar to zinc finger, matrin type ... 296 4e-80
Alignment gi|XP_851558.1| PREDICTED: similar to zinc finger, matrin type ... 216 4e-56
Alignment gi|XP_857547.1| PREDICTED: similar to zinc finger, matrin type ... 147 3e-35
>ref|XP_848938.1| PREDICTED: similar to zinc finger, matrin type 2 isoform 1 [Canis
familiaris].
Length = 199
Score = 296 bits (758), Expect = 4e-80
Identities = 153/199 (76%), Positives = 153/199 (76%)
Frame = +2
Query: 20 MASGSGAKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES 199
MASGSG KNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES
Sbjct: 1 MASGSGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES 60
Query: 200 KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD 379
KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD
Sbjct: 61 KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD 120
Query: 380 QVKKRFEVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTFEED 559
QVKKRFEVN LTFEED
Sbjct: 121 QVKKRFEVNKKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEED 180
Query: 560 DEMAAVMGFSGFGSTKKSY 616
DEMAAVMGFSGFGSTKKSY
Sbjct: 181 DEMAAVMGFSGFGSTKKSY 199
>ref|XP_851558.1| PREDICTED: similar to zinc finger, matrin type 2 [Canis
familiaris].
Length = 195
Score = 216 bits (551), Expect = 4e-56
Identities = 114/159 (71%), Positives = 114/159 (71%)
Frame = +2
Query: 140 VQPVKRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHIN 319
VQPVKRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHIN
Sbjct: 37 VQPVKRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHIN 96
Query: 320 GKKHQRNLGMSMRVERSTLDQVKKRFEVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 499
GKKHQRNLGMSMRVERSTLDQVKKRFEVN
Sbjct: 97 GKKHQRNLGMSMRVERSTLDQVKKRFEVNKKKMEEKQKDYDFEERMKELREEEEKAKAYK 156
Query: 500 XXXXXXXXXXXXXXLTFEEDDEMAAVMGFSGFGSTKKSY 616
LTFEEDDEMAAVMGFSGFGSTKKSY
Sbjct: 157 KEKQKEKKKRAEEDLTFEEDDEMAAVMGFSGFGSTKKSY 195
>ref|XP_857547.1| PREDICTED: similar to zinc finger, matrin type 2 isoform 2 [Canis
familiaris].
Length = 123
Score = 147 bits (371), Expect = 3e-35
Identities = 78/123 (63%), Positives = 78/123 (63%)
Frame = +2
Query: 248 MGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEVNXXXXXXX 427
MGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEVN
Sbjct: 1 MGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEVNKKKMEEK 60
Query: 428 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTFEEDDEMAAVMGFSGFGSTK 607
LTFEEDDEMAAVMGFSGFGSTK
Sbjct: 61 QKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEEDDEMAAVMGFSGFGSTK 120
Query: 608 KSY 616
KSY
Sbjct: 121 KSY 123
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,222,880
Number of extensions: 1262683
Number of successful extensions: 4691
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4682
Number of HSP's successfully gapped: 6
Length of query: 507
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 400
Effective length of database: 15,307,552
Effective search space: 6123020800
Effective search space used: 6123020800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007765
(1521 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354364.1| PREDICTED: zinc finger matrin-type protein 2... 298 7e-81
>ref|XP_003354364.1| PREDICTED: zinc finger matrin-type protein 2-like [Sus scrofa].
Length = 199
Score = 298 bits (762), Expect = 7e-81
Identities = 154/199 (77%), Positives = 154/199 (77%)
Frame = +2
Query: 20 MASGSGAKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES 199
MASGSGAKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES
Sbjct: 1 MASGSGAKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES 60
Query: 200 KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD 379
KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD
Sbjct: 61 KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD 120
Query: 380 QVKKRFEVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTFEED 559
QVKKRFEVN LTFEED
Sbjct: 121 QVKKRFEVNKKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEED 180
Query: 560 DEMAAVMGFSGFGSTKKSY 616
DEMAAVMGFSGFGSTKKSY
Sbjct: 181 DEMAAVMGFSGFGSTKKSY 199
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,302,986
Number of extensions: 1082707
Number of successful extensions: 2768
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2767
Number of HSP's successfully gapped: 2
Length of query: 507
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 404
Effective length of database: 8,779,541
Effective search space: 3546934564
Effective search space used: 3546934564
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007765
(1521 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079870.1| zinc finger matrin-type protein 2 [Mus musculus]. 296 3e-80
>ref|NP_079870.1| zinc finger matrin-type protein 2 [Mus musculus].
Length = 199
Score = 296 bits (758), Expect = 3e-80
Identities = 153/199 (76%), Positives = 153/199 (76%)
Frame = +2
Query: 20 MASGSGAKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES 199
MASGSG KNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES
Sbjct: 1 MASGSGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES 60
Query: 200 KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD 379
KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD
Sbjct: 61 KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD 120
Query: 380 QVKKRFEVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTFEED 559
QVKKRFEVN LTFEED
Sbjct: 121 QVKKRFEVNKKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEED 180
Query: 560 DEMAAVMGFSGFGSTKKSY 616
DEMAAVMGFSGFGSTKKSY
Sbjct: 181 DEMAAVMGFSGFGSTKKSY 199
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,900,311
Number of extensions: 1063304
Number of successful extensions: 3554
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3544
Number of HSP's successfully gapped: 2
Length of query: 507
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 401
Effective length of database: 12,433,743
Effective search space: 4985930943
Effective search space used: 4985930943
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007765
(1521 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_653324.1| zinc finger matrin-type protein 2 [Homo sapiens]. 296 3e-80
>ref|NP_653324.1| zinc finger matrin-type protein 2 [Homo sapiens].
Length = 199
Score = 296 bits (758), Expect = 3e-80
Identities = 153/199 (76%), Positives = 153/199 (76%)
Frame = +2
Query: 20 MASGSGAKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES 199
MASGSG KNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES
Sbjct: 1 MASGSGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLES 60
Query: 200 KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD 379
KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD
Sbjct: 61 KLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLD 120
Query: 380 QVKKRFEVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTFEED 559
QVKKRFEVN LTFEED
Sbjct: 121 QVKKRFEVNKKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEED 180
Query: 560 DEMAAVMGFSGFGSTKKSY 616
DEMAAVMGFSGFGSTKKSY
Sbjct: 181 DEMAAVMGFSGFGSTKKSY 199
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,356,659
Number of extensions: 1249987
Number of successful extensions: 4594
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4589
Number of HSP's successfully gapped: 2
Length of query: 507
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 400
Effective length of database: 14,770,016
Effective search space: 5908006400
Effective search space used: 5908006400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007765
(1521 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1764 0.0
Sscrofa_Chr13 64 2e-07
>Sscrofa_Chr02
|| Length = 162569375
Score = 1764 bits (890), Expect = 0.0
Identities = 940/962 (97%), Gaps = 1/962 (0%)
Strand = Plus / Plus
Query: 541 cttgacgtttgaggaggatgatgagatggcagctgtgatgggcttctctggctttggttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148360631 cttgacgtttgaggaggatgatgagatggcagctgtgatgggcttctctggctttggttc 148360690
Query: 601 cacaaagaagagttactgaggcttgctgtgcttggctctttgctgggcctaattttgtgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148360691 cacaaagaagagttactgaggcttgctgtgcttggctctttgctgggcctaattttgtgt 148360750
Query: 661 gtgtgggcatcagttttcgggaggtactcgggaaagtgtagcaatggggagggctagagg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148360751 gtgtgggcatcagttttcgggaggtactcgggaaagtgtagcaatggggagggctagagg 148360810
Query: 721 ggattgtggtttccctctgccttgggagagagcccgggatgcagaggtaatgctgtggca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148360811 ggattgtggtttccctctgccttgggagagagcccgggatgcagaggtaatgctgtggca 148360870
Query: 781 tatgcctccagcctcagtgtatccctggagtcccaggacctctgaccatctgagttccca 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148360871 tatgcctccagcctcagtgtatccctggagtcccaggacctctgaccatctgagttccca 148360930
Query: 841 ataaagaaaaacctcctcttcagaggctgctttcccgaaactccccctgcatctttctct 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148360931 ataaagaaaaacctcctcttcagaggctgctttcccgaaactccccctgcatctttctct 148360990
Query: 901 cttcatctgtccggtctcctatctgaacatcctacatttatcctgtggtctgcctttgtt 960
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 148360991 cttcatctgtccggtctcctatctgaacatcctacatttatcctgtgttctgcctttgtt 148361050
Query: 961 tttattttgactcttgcttagcctacagcagaagggttctctgggtcccccatttccagc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148361051 tttattttgactcttgcttagcctacagcagaagggttctctgggtcccccatttccagc 148361110
Query: 1021 tgatagcatacctttgatcaaccccccttccccattctctccatctctcccagccccctg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148361111 tgatagcatacctttgatcaaccccccttccccattctctccatctctcccagccccctg 148361170
Query: 1081 tggttctctggccacctgtgcatgcatgggtccgtggtgtgagcgggtatgtgtgcatga 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148361171 tggttctctggccacctgtgcatgcatgggtccgtggtgtgagcgggtatgtgtgcatga 148361230
Query: 1141 atctgtcacagagggagcctgagctagcgcctcagagcattgctgccttggggcctgatg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148361231 atctgtcacagagggagcctgagctagcgcctcagagcattgctgccttggggcctgatg 148361290
Query: 1201 tgcacaggttcctcagagcatgtaacagaacattaaatgggatgagtgtttggtgtgg-t 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 148361291 tgcacaggttcctcagagcatgtaacagaacattaaatgggatgagtgtttggtgtggtt 148361350
Query: 1260 tttttgtctggtgagttttttaacctttgttcttcgtatgtagattgttcagcttttcct 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148361351 tttttgtctggtgagttttttaacctttgttcttcgtatgtagattgttcagcttttcct 148361410
Query: 1320 gattgtttcattttattgaggattactctgnnnnnnnncttccttataagcaggctcttg 1379
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 148361411 gattgtttcattttattgaggattactctgttttttttcttccttataagcaggctcttg 148361470
Query: 1380 gaagaacctgtttgatgcnnnnnnnnnnnnggagaaaacctcatattcatatgggagccc 1439
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 148361471 gaagaacctgtttgatgcaaaaaagaaaaaggagaaaacctcatattcatatgggagccc 148361530
Query: 1440 ttgggtctcagaggctgttcgacatgataataaatggcattgactgggcctatttcacat 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148361531 ttgggtctcagaggctgttcgacatgataataaatggcattgactgggcctatttcacat 148361590
Query: 1500 tt 1501
||
Sbjct: 148361591 tt 148361592
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 131 ggaaagcccgtgcagccagtcaagcgagagcttctccggcatagagattacaaggtggac 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148357239 ggaaagcccgtgcagccagtcaagcgagagcttctccggcatagagattacaaggtggac 148357298
Query: 191 ctggaatccaagctcgggaagacaattgtcattaccaagactaccccacagtctgagatg 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148357299 ctggaatccaagctcgggaagacaattgtcattaccaagactaccccacagtctgagatg 148357358
Query: 251 ggagggta 258
||||||||
Sbjct: 148357359 ggagggta 148357366
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 37 ggcaaaaaacttggactttcgccgaaagtgggacaaagatgaatatgagaagcttgcgga 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148356042 ggcaaaaaacttggactttcgccgaaagtgggacaaagatgaatatgagaagcttgcgga 148356101
Query: 97 gaagaggctcacagaagagagagaaaagaaggatgg 132
||||||||||||||||||||||||||||||||||||
Sbjct: 148356102 gaagaggctcacagaagagagagaaaagaaggatgg 148356137
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 330 atcaacgaaacctaggcatgtctatgcgtgtggaacgttctaccttggatcaggtgaaga 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148359066 atcaacgaaacctaggcatgtctatgcgtgtggaacgttctaccttggatcaggtgaaga 148359125
Query: 390 aacgttttgaagtcaac 406
|||||||||||||||||
Sbjct: 148359126 aacgttttgaagtcaac 148359142
Score = 149 bits (75), Expect = 5e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 255 ggtattactgcaatgtctgtgactgtgtagtgaaagactctatcaacttcctggatcaca 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148358289 ggtattactgcaatgtctgtgactgtgtagtgaaagactctatcaacttcctggatcaca 148358348
Query: 315 ttaatggaaagaaac 329
|||||||||||||||
Sbjct: 148358349 ttaatggaaagaaac 148358363
Score = 71.9 bits (36), Expect = 1e-09
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 3 ttcacttcgctgtgaagatggcgtcgggtagcgggg 38
||||||||||||||||||||||||||||||||||||
Sbjct: 148355272 ttcacttcgctgtgaagatggcgtcgggtagcgggg 148355307
Score = 71.9 bits (36), Expect = 1e-09
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 3 ttcacttcgctgtgaagatggcgtcgggtagcgggg 38
||||||||||||||||||||||||||||||||||||
Sbjct: 148355676 ttcacttcgctgtgaagatggcgtcgggtagcgggg 148355711
>Sscrofa_Chr13
|| Length = 218635234
Score = 63.9 bits (32), Expect = 2e-07
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1432 gggagcccttgggtctcagaggctgttcgacatg-ataataaatggcattgactgggcct 1490
|||||||||||||||||| ||||| ||| || || ||| |||||||||||||||||||||
Sbjct: 88575393 gggagcccttgggtctcaaaggctattcaacgtgtatagtaaatggcattgactgggcct 88575452
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,686,317
Number of extensions: 427
Number of successful extensions: 427
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 10
Length of query: 1521
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1500
Effective length of database: 2,808,413,156
Effective search space: 4212619734000
Effective search space used: 4212619734000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)