Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007774
(1130 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071354.1| thioredoxin-like protein 1 [Bos taurus]. 528 e-150
Alignment gi|NP_776393.1| thioredoxin [Bos taurus]. 87 3e-17
Alignment gi|NP_001071628.1| thioredoxin domain-containing protein 8 [Bos... 79 6e-15
Alignment gi|NP_001092360.1| PITH domain-containing protein 1 [Bos taurus]. 60 5e-09
Alignment gi|NP_001030273.1| glutaredoxin-3 [Bos taurus]. 59 1e-08
>ref|NP_001071354.1| thioredoxin-like protein 1 [Bos taurus].
Length = 289
Score = 528 bits (1360), Expect = e-150
Identities = 259/272 (95%), Positives = 260/272 (95%)
Frame = +1
Query: 289 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 468
MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD
Sbjct: 1 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 60
Query: 469 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 648
VHQCQGTAATN ISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP
Sbjct: 61 VHQCQGTAATNKISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 120
Query: 649 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM 828
KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM
Sbjct: 121 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM 180
Query: 829 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN 1008
KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN
Sbjct: 181 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN 240
Query: 1009 VNSVTIFVQSNQGEEENTEFHILLLLGLRSQA 1104
VNSVTIFVQSNQGEEE T +G QA
Sbjct: 241 VNSVTIFVQSNQGEEETTRISYFTFIGTPVQA 272
>ref|NP_776393.1| thioredoxin [Bos taurus].
Length = 105
Score = 87.0 bits (214), Expect = 3e-17
Identities = 44/102 (43%), Positives = 57/102 (55%)
Frame = +1
Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
VK + S FQ L+ AG +L VV F+ CGPC I P F S+S KY VFLEVDV
Sbjct: 2 VKQIESKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD 61
Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
CQ AA + PTF FF+ ++ ++ GA+ LE I +
Sbjct: 62 CQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103
>ref|NP_001071628.1| thioredoxin domain-containing protein 8 [Bos taurus].
Length = 105
Score = 79.3 bits (194), Expect = 6e-15
Identities = 39/91 (42%), Positives = 56/91 (61%)
Frame = +1
Query: 337 LSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISAT 516
L AG++L V++F+ + CGPC RI P F +MS +Y +F VDV + A T +I A
Sbjct: 15 LKAAGNKLVVIEFSAKWCGPCKRIYPVFHAMSVQYRSVMFANVDVDNARELAQTYHIKAV 74
Query: 517 PTFLFFRNKVRIDQYQGADAVGLEEKIKQHL 609
PTF F+ +I + GADA LEEKI++ +
Sbjct: 75 PTFQLFKQTKKIFELCGADAKKLEEKIREFM 105
>ref|NP_001092360.1| PITH domain-containing protein 1 [Bos taurus].
Length = 211
Score = 59.7 bits (143), Expect = 5e-09
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Frame = +1
Query: 694 ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 855
+CLNES E R D + F+ESD DE+LL + F VKL + G D+
Sbjct: 41 QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDS 100
Query: 856 GPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQ 1035
P ++++ N+P+ M F++ +R EP Q L D+ + + +F NV ++I +
Sbjct: 101 HPSEMRLYKNIPQ-MSFDDTDR-EPDQTFSLNR-DLTGELEYATKISRFSNVYHLSIHIS 157
Query: 1036 SNQGEEENTEFHILLLLGLRSQ 1101
N G + F+I GLR +
Sbjct: 158 KNFGADTTKVFYI----GLRGE 175
>ref|NP_001030273.1| glutaredoxin-3 [Bos taurus].
Length = 334
Score = 58.5 bits (140), Expect = 1e-08
Identities = 34/123 (27%), Positives = 59/123 (47%)
Frame = +1
Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
V VGS F+ L L VV F C ++ + ++ ++ Q F++++
Sbjct: 12 VVEVGSSGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEA 71
Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGY 657
+ IS+ PTFLFF+N +ID+ GA A L +K+++H + S ++ PK
Sbjct: 72 VPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFSPSGSEHPKED 131
Query: 658 MDL 666
+ L
Sbjct: 132 LSL 134
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,355,077
Number of extensions: 916906
Number of successful extensions: 2740
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2732
Number of HSP's successfully gapped: 5
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007774
(1130 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541090.2| PREDICTED: similar to Thioredoxin-like protein ... 480 e-135
Alignment gi|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived ... 83 4e-16
Alignment gi|XP_547674.2| PREDICTED: similar to Thioredoxin domain contai... 74 3e-13
Alignment gi|XP_535061.2| PREDICTED: similar to Thioredoxin-like 2 protei... 63 5e-10
Alignment gi|XP_855140.1| PREDICTED: similar to thioredoxin family Trp26 ... 58 1e-08
>ref|XP_541090.2| PREDICTED: similar to Thioredoxin-like protein 1 (32 kDa
thioredoxin-related protein) [Canis familiaris].
Length = 267
Score = 480 bits (1235), Expect = e-135
Identities = 234/247 (94%), Positives = 236/247 (95%)
Frame = +1
Query: 364 VVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNK 543
+VKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNK
Sbjct: 1 MVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNK 60
Query: 544 VRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHG 723
VRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHG
Sbjct: 61 VRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHG 120
Query: 724 FDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMD 903
FDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMD
Sbjct: 121 FDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMD 180
Query: 904 FEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEENTEFHILLL 1083
FEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEE T
Sbjct: 181 FEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTF 240
Query: 1084 LGLRSQA 1104
+G QA
Sbjct: 241 IGTPVQA 247
>ref|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF)
(Surface associated sulphydryl protein) (SASP) [Canis
familiaris].
Length = 219
Score = 83.2 bits (204), Expect = 4e-16
Identities = 40/93 (43%), Positives = 53/93 (56%)
Frame = +1
Query: 325 FQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNN 504
FQ L+ AG +L VV F+ CGPC I P F S+S KY VFLEVDV CQ A+
Sbjct: 125 FQEALNSAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECE 184
Query: 505 ISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
+ PTF FF+ ++ ++ GA+ LE I +
Sbjct: 185 VKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 217
>ref|XP_547674.2| PREDICTED: similar to Thioredoxin domain containing protein 2
(Spermatid-specific thioredoxin-1) (Sptrx-1) [Canis
familiaris].
Length = 468
Score = 73.9 bits (180), Expect = 3e-13
Identities = 39/102 (38%), Positives = 54/102 (52%)
Frame = +1
Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
VK + + DF+ L AG RL V F+ CGPC I P F S+S KY VFLEVD +
Sbjct: 365 VKVILNKEDFELALKEAGERLVAVDFSATWCGPCRTIKPLFRSLSLKYEDVVFLEVDADE 424
Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
C+ I PTF F++ + ++ ++ GA LE I +
Sbjct: 425 CEELVKDLEIICIPTFQFYKQEEKVGEFCGAVKEKLEAIIAE 466
>ref|XP_535061.2| PREDICTED: similar to Thioredoxin-like 2 protein (PKC-interacting
cousin of thioredoxin) (PKCq-interacting protein)
(PKC-theta-interacting protein) [Canis familiaris].
Length = 333
Score = 63.2 bits (152), Expect = 5e-10
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Frame = +1
Query: 277 GSLRMVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVF 456
G+ V VGS P F+ L L VV F C+++ + ++ ++PQ F
Sbjct: 4 GAAEAAAVVEVGSAPQFEELLRLRAKSLVVVHFWAPWAPQCVQMNDVMAELAKEHPQVSF 63
Query: 457 LEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLEN---DPGS 627
++++ + IS+ PTFL F+N +ID+ GA A L +K+++H + P +
Sbjct: 64 VKLEAEAVPEVSEKYEISSVPTFLLFKNSQKIDRLDGAHAPELTKKVQRHASSGSFPPST 123
Query: 628 NE 633
NE
Sbjct: 124 NE 125
>ref|XP_855140.1| PREDICTED: similar to thioredoxin family Trp26 [Canis familiaris].
Length = 311
Score = 58.2 bits (139), Expect = 1e-08
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Frame = +1
Query: 694 ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 855
+CLNES E R D + F+ESD DE+LL + F VKL + G D+
Sbjct: 141 QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDS 200
Query: 856 GPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQ 1035
P ++++ N+P+ M F++ +R EP Q L D+ + + +F NV ++I +
Sbjct: 201 HPSEMRLYKNIPQ-MSFDDTDR-EPDQTFSLNR-DLTGELEYATKISRFSNVYHLSIHIS 257
Query: 1036 SNQGEEENTEFHILLLLGLRSQ 1101
N G + +L +GLR +
Sbjct: 258 KNFGADTTK----VLYIGLRGE 275
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,811,530
Number of extensions: 930614
Number of successful extensions: 2718
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2701
Number of HSP's successfully gapped: 5
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007774
(1130 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121501.2| PREDICTED: thioredoxin-like protein 1-like, ... 280 8e-76
Alignment gi|XP_003121502.2| PREDICTED: WD repeat-containing protein 7 [S... 179 3e-45
Alignment gi|NP_999478.1| thioredoxin [Sus scrofa]. 86 4e-17
Alignment gi|XP_003361328.1| PREDICTED: thioredoxin domain-containing pro... 67 1e-11
Alignment gi|NP_001182301.1| thioredoxin domain-containing protein 8 [Sus... 63 3e-10
Alignment gi|XP_003353652.1| PREDICTED: thioredoxin-like [Sus scrofa]. 62 8e-10
Alignment gi|XP_003356244.1| PREDICTED: PITH domain-containing protein 1-... 60 3e-09
Alignment gi|NP_001230825.1| glutaredoxin 3 [Sus scrofa]. 56 3e-08
>ref|XP_003121501.2| PREDICTED: thioredoxin-like protein 1-like, partial [Sus scrofa].
Length = 162
Score = 280 bits (717), Expect = 8e-76
Identities = 137/149 (91%), Positives = 138/149 (92%)
Frame = +1
Query: 658 MDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQ 837
MDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQ
Sbjct: 1 MDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQ 60
Query: 838 GPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNS 1017
GPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNS
Sbjct: 61 GPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNS 120
Query: 1018 VTIFVQSNQGEEENTEFHILLLLGLRSQA 1104
VTIFVQSNQGEEE T +G QA
Sbjct: 121 VTIFVQSNQGEEETTRISYFTFIGTPVQA 149
>ref|XP_003121502.2| PREDICTED: WD repeat-containing protein 7 [Sus scrofa].
Length = 766
Score = 179 bits (453), Expect = 3e-45
Identities = 94/129 (72%), Positives = 94/129 (72%)
Frame = -3
Query: 387 PSHGEFDHSESGARAAQLRLEIRVTPDRLYTYHSQRAWQGGRDATGFKTXXXXXXXXXXG 208
PSHGEFDHSESGARAAQLRLEIRVTPDRLYTYHSQRAWQGGRDATGFKT G
Sbjct: 568 PSHGEFDHSESGARAAQLRLEIRVTPDRLYTYHSQRAWQGGRDATGFKTEGEDDPGGDGG 627
Query: 207 RLRKAEAWTQEVATVASSPGALSAESRQGAERPXXXXXXXXXXXXXXXXXRHPAAXXXXX 28
RLRKAEAWTQEVATVASSPGALSAESRQGAERP RHPAA
Sbjct: 628 RLRKAEAWTQEVATVASSPGALSAESRQGAERPRKRDGRGETRGEEREGLRHPAATARRG 687
Query: 27 XXXWRTWTS 1
WRTWTS
Sbjct: 688 RRRWRTWTS 696
>ref|NP_999478.1| thioredoxin [Sus scrofa].
Length = 105
Score = 85.9 bits (211), Expect = 4e-17
Identities = 43/102 (42%), Positives = 57/102 (55%)
Frame = +1
Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
VK + S FQ L+ AG +L VV F+ CGPC I P F S+S KY VFLEVDV
Sbjct: 2 VKQIESKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD 61
Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
CQ A+ + PTF FF+ ++ ++ GA+ LE I +
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103
>ref|XP_003361328.1| PREDICTED: thioredoxin domain-containing protein 2-like [Sus
scrofa].
Length = 483
Score = 67.4 bits (163), Expect = 1e-11
Identities = 35/101 (34%), Positives = 54/101 (53%)
Frame = +1
Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
VK + + DF L AG RL V F+ C PC + P F S+S K+ +FLEVD +
Sbjct: 380 VKVILTKEDFDVALKEAGERLVAVDFSTTWCRPCRAMKPIFRSLSVKHQDVLFLEVDADE 439
Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIK 600
C+ I PTF F++ + ++ ++ GA L+EK++
Sbjct: 440 CEELVKDLKIVCIPTFHFYKKEEKVGEFSGA----LKEKLE 476
>ref|NP_001182301.1| thioredoxin domain-containing protein 8 [Sus scrofa].
Length = 118
Score = 63.2 bits (152), Expect = 3e-10
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +1
Query: 337 LSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISAT 516
L AG++L VV+F+ CGPC RI P F +MS +Y +F VDV + A T +I+A
Sbjct: 15 LRSAGNKLVVVEFSATWCGPCKRIYPLFHAMSLQYRNVMFASVDVDSARELARTYHINAI 74
Query: 517 PTFLFFRNKVRIDQY 561
PTF F+ +++ +
Sbjct: 75 PTFQMFKQTQKVNLF 89
>ref|XP_003353652.1| PREDICTED: thioredoxin-like [Sus scrofa].
Length = 70
Score = 61.6 bits (148), Expect = 8e-10
Identities = 29/53 (54%), Positives = 33/53 (62%)
Frame = +1
Query: 325 FQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQ 483
FQ L+ AG +L VV F+ CGPC I P F S+S KY VFLEVDV CQ
Sbjct: 7 FQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQ 59
>ref|XP_003356244.1| PREDICTED: PITH domain-containing protein 1-like [Sus scrofa].
Length = 211
Score = 59.7 bits (143), Expect = 3e-09
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Frame = +1
Query: 694 ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 855
+CLNES E R D + F+ESD DE+LL + F VKL + G D+
Sbjct: 41 QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDS 100
Query: 856 GPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQ 1035
P ++++ N+P+ M F++ +R EP Q L D+ + + +F NV ++I +
Sbjct: 101 HPSEMRLYKNIPQ-MSFDDTDR-EPDQTFSLNR-DLTGELEYATKISRFSNVYHLSIHIS 157
Query: 1036 SNQGEEENTEFHILLLLGLRSQ 1101
N G + F+I GLR +
Sbjct: 158 KNFGADTTKVFYI----GLRGE 175
>ref|NP_001230825.1| glutaredoxin 3 [Sus scrofa].
Length = 334
Score = 56.2 bits (134), Expect = 3e-08
Identities = 31/103 (30%), Positives = 51/103 (49%)
Frame = +1
Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
V VGS F+ L L VV F C ++ + ++ ++PQ F++++
Sbjct: 12 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 71
Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 606
+ IS+ PTFLFF+N ID+ GA A L +K+++H
Sbjct: 72 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRH 114
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,167,825
Number of extensions: 609992
Number of successful extensions: 1719
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1712
Number of HSP's successfully gapped: 8
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007774
(1130 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058072.2| thioredoxin-like protein 1 [Mus musculus]. 526 e-149
Alignment gi|NP_035790.1| thioredoxin [Mus musculus]. 85 9e-17
Alignment gi|NP_001139474.1| thioredoxin domain-containing protein 2 isof... 72 1e-12
Alignment gi|NP_705739.2| thioredoxin domain-containing protein 2 isoform... 72 1e-12
Alignment gi|NP_080408.2| thioredoxin domain-containing protein 8 [Mus mu... 65 7e-11
Alignment gi|NP_079687.3| PITH domain-containing protein 1 [Mus musculus]. 61 1e-09
Alignment gi|NP_075629.2| glutaredoxin-3 [Mus musculus]. 59 5e-09
>ref|NP_058072.2| thioredoxin-like protein 1 [Mus musculus].
Length = 289
Score = 526 bits (1355), Expect = e-149
Identities = 257/272 (94%), Positives = 260/272 (95%)
Frame = +1
Query: 289 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 468
MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD
Sbjct: 1 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 60
Query: 469 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 648
VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNED DIP
Sbjct: 61 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDADIP 120
Query: 649 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM 828
KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDM+FLESDCDEQLLITVAFNQPVKLYSM
Sbjct: 121 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMSFLESDCDEQLLITVAFNQPVKLYSM 180
Query: 829 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN 1008
KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN
Sbjct: 181 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN 240
Query: 1009 VNSVTIFVQSNQGEEENTEFHILLLLGLRSQA 1104
VNSVT+FVQSNQGEEE T +G QA
Sbjct: 241 VNSVTLFVQSNQGEEETTRISYFTFIGTPVQA 272
>ref|NP_035790.1| thioredoxin [Mus musculus].
Length = 105
Score = 85.1 bits (209), Expect = 9e-17
Identities = 42/103 (40%), Positives = 58/103 (56%)
Frame = +1
Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
VK + S FQ L+ AG +L VV F+ CGPC I P F S+ +KY VFLEVDV
Sbjct: 2 VKLIESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDD 61
Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 606
CQ AA + PTF F++ ++ ++ GA+ LE I ++
Sbjct: 62 CQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104
>ref|NP_001139474.1| thioredoxin domain-containing protein 2 isoform 1 [Mus musculus].
Length = 550
Score = 71.6 bits (174), Expect = 1e-12
Identities = 34/102 (33%), Positives = 53/102 (51%)
Frame = +1
Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
V+ + +F+ L AG +L V F+ CGPC + P F S+S K+ +FLEVD
Sbjct: 447 VRVIKDKEEFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTED 506
Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
C+ I PTF F++N+ ++ ++ GA LE I +
Sbjct: 507 CEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 548
>ref|NP_705739.2| thioredoxin domain-containing protein 2 isoform 2 [Mus musculus].
Length = 543
Score = 71.6 bits (174), Expect = 1e-12
Identities = 34/102 (33%), Positives = 53/102 (51%)
Frame = +1
Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
V+ + +F+ L AG +L V F+ CGPC + P F S+S K+ +FLEVD
Sbjct: 440 VRVIKDKEEFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTED 499
Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
C+ I PTF F++N+ ++ ++ GA LE I +
Sbjct: 500 CEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 541
>ref|NP_080408.2| thioredoxin domain-containing protein 8 [Mus musculus].
Length = 153
Score = 65.5 bits (158), Expect = 7e-11
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 22/130 (16%)
Frame = +1
Query: 280 SLRMVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFL 459
S ++ VK + + + + S AG++L VV+F+ + CGPC IAP F +MS KY F
Sbjct: 22 SQMLIMVKRIKNMSELKELFSDAGNKLVVVEFSAKWCGPCKTIAPVFQAMSLKYQNVTFA 81
Query: 460 EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQY----------------------QGAD 573
+VDV + A +I+ PTF F+ ++ + GAD
Sbjct: 82 QVDVDSSKELAEHCDITMLPTFQMFKYTQKVTPFSRLKRVLCCLRSGPKSKMIFECHGAD 141
Query: 574 AVGLEEKIKQ 603
A LE+KI++
Sbjct: 142 AKQLEKKIQE 151
>ref|NP_079687.3| PITH domain-containing protein 1 [Mus musculus].
Length = 211
Score = 61.2 bits (147), Expect = 1e-09
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Frame = +1
Query: 694 ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 855
+CLNES E R D + F+ESD DE+LL + F VKL + G D+
Sbjct: 41 QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGVIIMGEDDDS 100
Query: 856 GPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQ 1035
P ++++ N+P+ M F++ ER EP Q L DI + + +F NV ++I +
Sbjct: 101 HPSEMRLYKNIPQ-MSFDDTER-EPEQTFSLNR-DITGELEYATKISRFSNVYHLSIHIS 157
Query: 1036 SNQGEEENTEFHILLLLGLRSQ 1101
N G + F+I GLR +
Sbjct: 158 KNFGADTTKIFYI----GLRGE 175
>ref|NP_075629.2| glutaredoxin-3 [Mus musculus].
Length = 337
Score = 59.3 bits (142), Expect = 5e-09
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Frame = +1
Query: 292 VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDV 471
V V VGS F+ L L VV F C+++ + ++ ++P F++++
Sbjct: 13 VAVVEVGSAQQFEELLRLKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEA 72
Query: 472 HQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLEN---DPGSNE 633
+ IS+ PTFLFF+N ++D+ GA A L +K+++H+ + P +NE
Sbjct: 73 EAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGAFPPSTNE 129
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,500,951
Number of extensions: 782749
Number of successful extensions: 2341
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2322
Number of HSP's successfully gapped: 7
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007774
(1130 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004777.1| thioredoxin-like protein 1 [Homo sapiens]. 528 e-150
Alignment gi|NP_003320.2| thioredoxin [Homo sapiens]. 86 6e-17
Alignment gi|NP_115619.4| thioredoxin domain-containing protein 2 isoform... 74 2e-13
Alignment gi|NP_001091999.1| thioredoxin domain-containing protein 2 isof... 74 2e-13
Alignment gi|NP_001003936.1| thioredoxin domain-containing protein 8 [Hom... 65 1e-10
Alignment gi|NP_065095.2| PITH domain-containing protein 1 [Homo sapiens]. 61 2e-09
Alignment gi|NP_001186797.1| glutaredoxin-3 [Homo sapiens]. 59 8e-09
Alignment gi|NP_006532.2| glutaredoxin-3 [Homo sapiens]. 59 8e-09
Alignment gi|NP_001139021.1| thioredoxin domain-containing protein 5 isof... 50 5e-06
Alignment gi|NP_110437.2| thioredoxin domain-containing protein 5 isoform... 50 5e-06
>ref|NP_004777.1| thioredoxin-like protein 1 [Homo sapiens].
Length = 289
Score = 528 bits (1360), Expect = e-150
Identities = 259/272 (95%), Positives = 260/272 (95%)
Frame = +1
Query: 289 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 468
MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD
Sbjct: 1 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 60
Query: 469 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 648
VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP
Sbjct: 61 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 120
Query: 649 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM 828
KGYMDLMPFINKAGCECLNESDEHGFDNCLRKD TFLESDCDEQLLITVAFNQPVKLYSM
Sbjct: 121 KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDTTFLESDCDEQLLITVAFNQPVKLYSM 180
Query: 829 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN 1008
KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN
Sbjct: 181 KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN 240
Query: 1009 VNSVTIFVQSNQGEEENTEFHILLLLGLRSQA 1104
VNSVTIFVQSNQGEEE T +G QA
Sbjct: 241 VNSVTIFVQSNQGEEETTRISYFTFIGTPVQA 272
>ref|NP_003320.2| thioredoxin [Homo sapiens].
Length = 105
Score = 85.9 bits (211), Expect = 6e-17
Identities = 42/102 (41%), Positives = 56/102 (54%)
Frame = +1
Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
VK + S FQ L AG +L VV F+ CGPC I P F S+S KY +FLEVDV
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
CQ A+ + PTF FF+ ++ ++ GA+ LE I +
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103
>ref|NP_115619.4| thioredoxin domain-containing protein 2 isoform 1 [Homo sapiens].
Length = 486
Score = 73.9 bits (180), Expect = 2e-13
Identities = 39/101 (38%), Positives = 55/101 (54%)
Frame = +1
Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
VK + S DF+ L AG RL V F+ CGPC I P F ++S K+ VFLEVD
Sbjct: 383 VKVILSKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADN 442
Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIK 600
C+ I PTF F++ + ++D+ GA L+EK++
Sbjct: 443 CEEVVRECAIMCVPTFQFYKKEEKVDELCGA----LKEKLE 479
>ref|NP_001091999.1| thioredoxin domain-containing protein 2 isoform 2 [Homo sapiens].
Length = 553
Score = 73.9 bits (180), Expect = 2e-13
Identities = 39/101 (38%), Positives = 55/101 (54%)
Frame = +1
Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
VK + S DF+ L AG RL V F+ CGPC I P F ++S K+ VFLEVD
Sbjct: 450 VKVILSKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADN 509
Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIK 600
C+ I PTF F++ + ++D+ GA L+EK++
Sbjct: 510 CEEVVRECAIMCVPTFQFYKKEEKVDELCGA----LKEKLE 546
>ref|NP_001003936.1| thioredoxin domain-containing protein 8 [Homo sapiens].
Length = 115
Score = 65.1 bits (157), Expect = 1e-10
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +1
Query: 322 DFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATN 501
+F+ L+ AG +LAVV+F+ + CGPC R+ P F +MS KY F VDV+ A T
Sbjct: 10 EFKTFLTAAGHKLAVVQFSSKRCGPCKRMFPVFHAMSVKYQNVFFANVDVNNSPELAETC 69
Query: 502 NISATPTFLFFRNKVRI 552
+I PTF F+ ++
Sbjct: 70 HIKTIPTFQMFKKSQKV 86
>ref|NP_065095.2| PITH domain-containing protein 1 [Homo sapiens].
Length = 211
Score = 60.8 bits (146), Expect = 2e-09
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Frame = +1
Query: 694 ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 855
+CLNES E R D + F+ESD DE+LL + F VKL + G D+
Sbjct: 41 QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDS 100
Query: 856 GPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQ 1035
P ++++ N+P+ M F++ ER EP Q L D+ + + +F NV ++I +
Sbjct: 101 HPSEMRLYKNIPQ-MSFDDTER-EPDQTFSLNR-DLTGELEYATKISRFSNVYHLSIHIS 157
Query: 1036 SNQGEEENTEFHILLLLGLRSQ 1101
N G + F+I GLR +
Sbjct: 158 KNFGADTTKVFYI----GLRGE 175
>ref|NP_001186797.1| glutaredoxin-3 [Homo sapiens].
Length = 335
Score = 58.9 bits (141), Expect = 8e-09
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Frame = +1
Query: 289 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 468
+ V+ VGS F+ L L VV F C ++ + ++ + PQ F++++
Sbjct: 10 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLE 69
Query: 469 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLEND---PGSNE 633
+ IS+ PTFLFF+N +ID+ GA A L +K+++H + P +NE
Sbjct: 70 AEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANE 127
>ref|NP_006532.2| glutaredoxin-3 [Homo sapiens].
Length = 335
Score = 58.9 bits (141), Expect = 8e-09
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Frame = +1
Query: 289 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 468
+ V+ VGS F+ L L VV F C ++ + ++ + PQ F++++
Sbjct: 10 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLE 69
Query: 469 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLEND---PGSNE 633
+ IS+ PTFLFF+N +ID+ GA A L +K+++H + P +NE
Sbjct: 70 AEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANE 127
>ref|NP_001139021.1| thioredoxin domain-containing protein 5 isoform 3 [Homo sapiens].
Length = 324
Score = 49.7 bits (117), Expect = 5e-06
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Frame = +1
Query: 283 LRMVGVKPVGSDPDFQP-----------ELSGAGSRLAV------VKFTMRGCGPCLRIA 411
L+ + +PV +P+ +P ELS + L V +KF CG C +A
Sbjct: 57 LQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALA 116
Query: 412 PAFSSMSN--KYPQAVFL-EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQG-ADAV 579
P + ++ ++ + V + +VD Q + N + PT L+FR+ ++DQY+G D
Sbjct: 117 PTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLE 176
Query: 580 GLEEKIKQHLENDPGSNEDTDIPK--GYMDLMPFINKAGCECLNESDEHGFDNCLRKDMT 753
L E ++ L+ +T P + P +K L E++ FD+ + + +T
Sbjct: 177 SLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKGTVLALTENN---FDDTIAEGIT 233
Query: 754 FLE 762
F++
Sbjct: 234 FIK 236
>ref|NP_110437.2| thioredoxin domain-containing protein 5 isoform 1 precursor [Homo
sapiens].
Length = 432
Score = 49.7 bits (117), Expect = 5e-06
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Frame = +1
Query: 283 LRMVGVKPVGSDPDFQP-----------ELSGAGSRLAV------VKFTMRGCGPCLRIA 411
L+ + +PV +P+ +P ELS + L V +KF CG C +A
Sbjct: 165 LQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALA 224
Query: 412 PAFSSMSN--KYPQAVFL-EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQG-ADAV 579
P + ++ ++ + V + +VD Q + N + PT L+FR+ ++DQY+G D
Sbjct: 225 PTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLE 284
Query: 580 GLEEKIKQHLENDPGSNEDTDIPK--GYMDLMPFINKAGCECLNESDEHGFDNCLRKDMT 753
L E ++ L+ +T P + P +K L E++ FD+ + + +T
Sbjct: 285 SLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKGTVLALTENN---FDDTIAEGIT 341
Query: 754 FLE 762
F++
Sbjct: 342 FIK 344
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,188,712
Number of extensions: 921413
Number of successful extensions: 2574
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2564
Number of HSP's successfully gapped: 10
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007774
(1130 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 688 0.0
Sscrofa_Chr15 178 4e-42
>Sscrofa_Chr01
|| Length = 315321322
Score = 688 bits (347), Expect = 0.0
Identities = 347/347 (100%)
Strand = Plus / Minus
Query: 42 tggctgctgggtgccgcaagccttccctttcctcgcctctcgtttcccccctcccatccc 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116763446 tggctgctgggtgccgcaagccttccctttcctcgcctctcgtttcccccctcccatccc 116763387
Query: 102 gtttcctcggccgctccgctccctggcgtgactcggcactgagagccccgggagaagacg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116763386 gtttcctcggccgctccgctccctggcgtgactcggcactgagagccccgggagaagacg 116763327
Query: 162 ccacggtcgccacctcctgtgtccaggcctcggccttcctgagtctacccccgtcccctc 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116763326 ccacggtcgccacctcctgtgtccaggcctcggccttcctgagtctacccccgtcccctc 116763267
Query: 222 ccgggtcgtcttctccttcagttttgaaaccggtggcgtcgcggccaccttgccaggctc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116763266 ccgggtcgtcttctccttcagttttgaaaccggtggcgtcgcggccaccttgccaggctc 116763207
Query: 282 tctgagaatggtaggtgtaaagccggtcgggagtgacccggatttccagccggagctgag 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116763206 tctgagaatggtaggtgtaaagccggtcgggagtgacccggatttccagccggagctgag 116763147
Query: 342 cggcgcgggctccagactcgctgtggtcaaattcaccatgcgagggt 388
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116763146 cggcgcgggctccagactcgctgtggtcaaattcaccatgcgagggt 116763100
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Minus
Query: 482 agggaactgctgccaccaacaacatatcagcgacacctacatttttgtttttccgaaaca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116747486 agggaactgctgccaccaacaacatatcagcgacacctacatttttgtttttccgaaaca 116747427
Query: 542 aagtgagaattgatcagtatcaaggagcagatgccgtgggattagaagaaaaaatcaagc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116747426 aagtgagaattgatcagtatcaaggagcagatgccgtgggattagaagaaaaaatcaagc 116747367
Query: 602 agcacttagaaaacgaccctggaagcaatgaggacacagatattccaaaaggctat 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116747366 agcacttagaaaacgaccctggaagcaatgaggacacagatattccaaaaggctat 116747311
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 850 ggtcagggtcctaaatatgtaaaaatttttatcaatctaccccgatctatggattttgaa 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116734126 ggtcagggtcctaaatatgtaaaaatttttatcaatctaccccgatctatggattttgaa 116734067
Query: 910 gaggcagaaagaagcgaaccaactcaagctctggaactaacagaggatgatattaaagaa 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116734066 gaggcagaaagaagcgaaccaactcaagctctggaactaacagaggatgatattaaagaa 116734007
Query: 970 gatggtattgttccacttcgttatgttaagtttcagaatgttaacagtgtaact 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116734006 gatggtattgttccacttcgttatgttaagtttcagaatgttaacagtgtaact 116733953
Score = 244 bits (123), Expect = 9e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 658 atggatttaatgccttttattaacaaagctggctgtgaatgtcttaatgaaagtgacgag 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116738139 atggatttaatgccttttattaacaaagctggctgtgaatgtcttaatgaaagtgacgag 116738080
Query: 718 catggatttgacaactgtttacgaaaagacatgaccttcctggaatctgattgtgatgaa 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116738079 catggatttgacaactgtttacgaaaagacatgaccttcctggaatctgattgtgatgaa 116738020
Query: 778 cag 780
|||
Sbjct: 116738019 cag 116738017
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 386 ggtgtggaccatgtttaaggattgccccagcattcagttctatgagtaataagtatccac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116748999 ggtgtggaccatgtttaaggattgccccagcattcagttctatgagtaataagtatccac 116748940
Query: 446 aagcagttttcttggaagtagatgtacatcagtgtcagg 484
|||||||||||||||||||||||||||||||||||||||
Sbjct: 116748939 aagcagttttcttggaagtagatgtacatcagtgtcagg 116748901
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 777 acagctacttattactgtggcattcaatcagcctgttaagctttactcaatgaaatttca 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116736786 acagctacttattactgtggcattcaatcagcctgttaagctttactcaatgaaatttca 116736727
Query: 837 agggccagataatggt 852
||||||||||||||||
Sbjct: 116736726 agggccagataatggt 116736711
Score = 129 bits (65), Expect = 4e-27
Identities = 101/109 (92%), Gaps = 3/109 (2%)
Strand = Plus / Minus
Query: 1024 atatttgttcagtccaatcaaggtgaagaagaaaacaca-gaatttcatattttactttt 1082
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 116730843 atatttgttcagtccaatcaaggtgaagaagaaacaacaagaatttcatattttactttt 116730784
Query: 1083 attgggactccggtcccaggc-accaatatgaatgactttcaacgagta 1130
|||||||||||||| |||||| || |||||||||||||| ||||||||
Sbjct: 116730783 attgggactccggt-ccaggcaacaaatatgaatgacttcaaacgagta 116730736
>Sscrofa_Chr15
|| Length = 157681621
Score = 178 bits (90), Expect = 4e-42
Identities = 179/205 (87%), Gaps = 4/205 (1%)
Strand = Plus / Minus
Query: 878 ttatcaatctaccccgatctatggattttgaagaggcagaaagaagcgaaccaactcaag 937
|||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct: 53836610 ttatcaatctaccctgatctatggatttcgaagaggcaaaaagaagtaaaccaactcaag 53836551
Query: 938 ctctggaactaacagaggatgatattaaagaagatggtattgt--tccacttcgttatgt 995
||||||| || |||||||| |||||||| || |||| ||||| ||| | |||| ||||
Sbjct: 53836550 ctctggagctcacagaggacgatattaa-gagaatggcattgtcctccccctcgtcatgt 53836492
Query: 996 taagtttcagaatgttaacagtgtaactatatttgttcagtccaatcaaggtgaagaaga 1055
||||||||||| ||||| | ||||| |||||||||||||||||||||||| |||||||||
Sbjct: 53836491 taagtttcagagtgttagcggtgtagctatatttgttcagtccaatcaagatgaagaaga 53836432
Query: 1056 aaacac-agaatttcatattttact 1079
|| || |||||||| |||||||||
Sbjct: 53836431 aatgacgagaatttcttattttact 53836407
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,571,379
Number of extensions: 230
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 8
Length of query: 1130
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1109
Effective length of database: 2,808,413,156
Effective search space: 3114530190004
Effective search space used: 3114530190004
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)