Animal-Genome cDNA 20110601C-007774


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007774
         (1130 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001071354.1| thioredoxin-like protein 1 [Bos taurus].          528   e-150
Alignment   gi|NP_776393.1| thioredoxin [Bos taurus].                             87   3e-17
Alignment   gi|NP_001071628.1| thioredoxin domain-containing protein 8 [Bos...    79   6e-15
Alignment   gi|NP_001092360.1| PITH domain-containing protein 1 [Bos taurus].     60   5e-09
Alignment   gi|NP_001030273.1| glutaredoxin-3 [Bos taurus].                       59   1e-08

>ref|NP_001071354.1| thioredoxin-like protein 1 [Bos taurus].
          Length = 289

 Score =  528 bits (1360), Expect = e-150
 Identities = 259/272 (95%), Positives = 260/272 (95%)
 Frame = +1

Query: 289  MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 468
            MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD
Sbjct: 1    MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 60

Query: 469  VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 648
            VHQCQGTAATN ISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP
Sbjct: 61   VHQCQGTAATNKISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 120

Query: 649  KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM 828
            KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM
Sbjct: 121  KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM 180

Query: 829  KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN 1008
            KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN
Sbjct: 181  KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN 240

Query: 1009 VNSVTIFVQSNQGEEENTEFHILLLLGLRSQA 1104
            VNSVTIFVQSNQGEEE T       +G   QA
Sbjct: 241  VNSVTIFVQSNQGEEETTRISYFTFIGTPVQA 272


>ref|NP_776393.1| thioredoxin [Bos taurus].
          Length = 105

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 44/102 (43%), Positives = 57/102 (55%)
 Frame = +1

Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
           VK + S   FQ  L+ AG +L VV F+   CGPC  I P F S+S KY   VFLEVDV  
Sbjct: 2   VKQIESKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD 61

Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
           CQ  AA   +   PTF FF+   ++ ++ GA+   LE  I +
Sbjct: 62  CQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103


>ref|NP_001071628.1| thioredoxin domain-containing protein 8 [Bos taurus].
          Length = 105

 Score = 79.3 bits (194), Expect = 6e-15
 Identities = 39/91 (42%), Positives = 56/91 (61%)
 Frame = +1

Query: 337 LSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISAT 516
           L  AG++L V++F+ + CGPC RI P F +MS +Y   +F  VDV   +  A T +I A 
Sbjct: 15  LKAAGNKLVVIEFSAKWCGPCKRIYPVFHAMSVQYRSVMFANVDVDNARELAQTYHIKAV 74

Query: 517 PTFLFFRNKVRIDQYQGADAVGLEEKIKQHL 609
           PTF  F+   +I +  GADA  LEEKI++ +
Sbjct: 75  PTFQLFKQTKKIFELCGADAKKLEEKIREFM 105


>ref|NP_001092360.1| PITH domain-containing protein 1 [Bos taurus].
          Length = 211

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
 Frame = +1

Query: 694  ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 855
            +CLNES E            R D + F+ESD DE+LL  + F   VKL  +   G D+  
Sbjct: 41   QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDS 100

Query: 856  GPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQ 1035
             P  ++++ N+P+ M F++ +R EP Q   L   D+  +     +  +F NV  ++I + 
Sbjct: 101  HPSEMRLYKNIPQ-MSFDDTDR-EPDQTFSLNR-DLTGELEYATKISRFSNVYHLSIHIS 157

Query: 1036 SNQGEEENTEFHILLLLGLRSQ 1101
             N G +    F+I    GLR +
Sbjct: 158  KNFGADTTKVFYI----GLRGE 175


>ref|NP_001030273.1| glutaredoxin-3 [Bos taurus].
          Length = 334

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 34/123 (27%), Positives = 59/123 (47%)
 Frame = +1

Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
           V  VGS   F+  L      L VV F       C ++    + ++ ++ Q  F++++   
Sbjct: 12  VVEVGSSGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEA 71

Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGY 657
               +    IS+ PTFLFF+N  +ID+  GA A  L +K+++H  +   S   ++ PK  
Sbjct: 72  VPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFSPSGSEHPKED 131

Query: 658 MDL 666
           + L
Sbjct: 132 LSL 134


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,355,077
Number of extensions: 916906
Number of successful extensions: 2740
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2732
Number of HSP's successfully gapped: 5
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007774
         (1130 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_541090.2| PREDICTED: similar to Thioredoxin-like protein ...   480   e-135
Alignment   gi|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived ...    83   4e-16
Alignment   gi|XP_547674.2| PREDICTED: similar to Thioredoxin domain contai...    74   3e-13
Alignment   gi|XP_535061.2| PREDICTED: similar to Thioredoxin-like 2 protei...    63   5e-10
Alignment   gi|XP_855140.1| PREDICTED: similar to thioredoxin family Trp26 ...    58   1e-08

>ref|XP_541090.2| PREDICTED: similar to Thioredoxin-like protein 1 (32 kDa
            thioredoxin-related protein) [Canis familiaris].
          Length = 267

 Score =  480 bits (1235), Expect = e-135
 Identities = 234/247 (94%), Positives = 236/247 (95%)
 Frame = +1

Query: 364  VVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNK 543
            +VKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNK
Sbjct: 1    MVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNK 60

Query: 544  VRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHG 723
            VRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHG
Sbjct: 61   VRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMPFINKAGCECLNESDEHG 120

Query: 724  FDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMD 903
            FDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMD
Sbjct: 121  FDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMD 180

Query: 904  FEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEENTEFHILLL 1083
            FEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEE T       
Sbjct: 181  FEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTF 240

Query: 1084 LGLRSQA 1104
            +G   QA
Sbjct: 241  IGTPVQA 247


>ref|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF)
           (Surface associated sulphydryl protein) (SASP) [Canis
           familiaris].
          Length = 219

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 40/93 (43%), Positives = 53/93 (56%)
 Frame = +1

Query: 325 FQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNN 504
           FQ  L+ AG +L VV F+   CGPC  I P F S+S KY   VFLEVDV  CQ  A+   
Sbjct: 125 FQEALNSAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECE 184

Query: 505 ISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
           +   PTF FF+   ++ ++ GA+   LE  I +
Sbjct: 185 VKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 217


>ref|XP_547674.2| PREDICTED: similar to Thioredoxin domain containing protein 2
           (Spermatid-specific thioredoxin-1) (Sptrx-1) [Canis
           familiaris].
          Length = 468

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 39/102 (38%), Positives = 54/102 (52%)
 Frame = +1

Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
           VK + +  DF+  L  AG RL  V F+   CGPC  I P F S+S KY   VFLEVD  +
Sbjct: 365 VKVILNKEDFELALKEAGERLVAVDFSATWCGPCRTIKPLFRSLSLKYEDVVFLEVDADE 424

Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
           C+       I   PTF F++ + ++ ++ GA    LE  I +
Sbjct: 425 CEELVKDLEIICIPTFQFYKQEEKVGEFCGAVKEKLEAIIAE 466


>ref|XP_535061.2| PREDICTED: similar to Thioredoxin-like 2 protein (PKC-interacting
           cousin of thioredoxin) (PKCq-interacting protein)
           (PKC-theta-interacting protein) [Canis familiaris].
          Length = 333

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
 Frame = +1

Query: 277 GSLRMVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVF 456
           G+     V  VGS P F+  L      L VV F       C+++    + ++ ++PQ  F
Sbjct: 4   GAAEAAAVVEVGSAPQFEELLRLRAKSLVVVHFWAPWAPQCVQMNDVMAELAKEHPQVSF 63

Query: 457 LEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLEN---DPGS 627
           ++++       +    IS+ PTFL F+N  +ID+  GA A  L +K+++H  +    P +
Sbjct: 64  VKLEAEAVPEVSEKYEISSVPTFLLFKNSQKIDRLDGAHAPELTKKVQRHASSGSFPPST 123

Query: 628 NE 633
           NE
Sbjct: 124 NE 125


>ref|XP_855140.1| PREDICTED: similar to thioredoxin family Trp26 [Canis familiaris].
          Length = 311

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
 Frame = +1

Query: 694  ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 855
            +CLNES E            R D + F+ESD DE+LL  + F   VKL  +   G D+  
Sbjct: 141  QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDS 200

Query: 856  GPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQ 1035
             P  ++++ N+P+ M F++ +R EP Q   L   D+  +     +  +F NV  ++I + 
Sbjct: 201  HPSEMRLYKNIPQ-MSFDDTDR-EPDQTFSLNR-DLTGELEYATKISRFSNVYHLSIHIS 257

Query: 1036 SNQGEEENTEFHILLLLGLRSQ 1101
             N G +       +L +GLR +
Sbjct: 258  KNFGADTTK----VLYIGLRGE 275


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,811,530
Number of extensions: 930614
Number of successful extensions: 2718
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2701
Number of HSP's successfully gapped: 5
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007774
         (1130 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003121501.2| PREDICTED: thioredoxin-like protein 1-like, ...   280   8e-76
Alignment   gi|XP_003121502.2| PREDICTED: WD repeat-containing protein 7 [S...   179   3e-45
Alignment   gi|NP_999478.1| thioredoxin [Sus scrofa].                             86   4e-17
Alignment   gi|XP_003361328.1| PREDICTED: thioredoxin domain-containing pro...    67   1e-11
Alignment   gi|NP_001182301.1| thioredoxin domain-containing protein 8 [Sus...    63   3e-10
Alignment   gi|XP_003353652.1| PREDICTED: thioredoxin-like [Sus scrofa].          62   8e-10
Alignment   gi|XP_003356244.1| PREDICTED: PITH domain-containing protein 1-...    60   3e-09
Alignment   gi|NP_001230825.1| glutaredoxin 3 [Sus scrofa].                       56   3e-08

>ref|XP_003121501.2| PREDICTED: thioredoxin-like protein 1-like, partial [Sus scrofa].
          Length = 162

 Score =  280 bits (717), Expect = 8e-76
 Identities = 137/149 (91%), Positives = 138/149 (92%)
 Frame = +1

Query: 658  MDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQ 837
            MDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQ
Sbjct: 1    MDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQ 60

Query: 838  GPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNS 1017
            GPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNS
Sbjct: 61   GPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNS 120

Query: 1018 VTIFVQSNQGEEENTEFHILLLLGLRSQA 1104
            VTIFVQSNQGEEE T       +G   QA
Sbjct: 121  VTIFVQSNQGEEETTRISYFTFIGTPVQA 149


>ref|XP_003121502.2| PREDICTED: WD repeat-containing protein 7 [Sus scrofa].
          Length = 766

 Score =  179 bits (453), Expect = 3e-45
 Identities = 94/129 (72%), Positives = 94/129 (72%)
 Frame = -3

Query: 387 PSHGEFDHSESGARAAQLRLEIRVTPDRLYTYHSQRAWQGGRDATGFKTXXXXXXXXXXG 208
           PSHGEFDHSESGARAAQLRLEIRVTPDRLYTYHSQRAWQGGRDATGFKT          G
Sbjct: 568 PSHGEFDHSESGARAAQLRLEIRVTPDRLYTYHSQRAWQGGRDATGFKTEGEDDPGGDGG 627

Query: 207 RLRKAEAWTQEVATVASSPGALSAESRQGAERPXXXXXXXXXXXXXXXXXRHPAAXXXXX 28
           RLRKAEAWTQEVATVASSPGALSAESRQGAERP                 RHPAA     
Sbjct: 628 RLRKAEAWTQEVATVASSPGALSAESRQGAERPRKRDGRGETRGEEREGLRHPAATARRG 687

Query: 27  XXXWRTWTS 1
              WRTWTS
Sbjct: 688 RRRWRTWTS 696


>ref|NP_999478.1| thioredoxin [Sus scrofa].
          Length = 105

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 43/102 (42%), Positives = 57/102 (55%)
 Frame = +1

Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
           VK + S   FQ  L+ AG +L VV F+   CGPC  I P F S+S KY   VFLEVDV  
Sbjct: 2   VKQIESKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD 61

Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
           CQ  A+   +   PTF FF+   ++ ++ GA+   LE  I +
Sbjct: 62  CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103


>ref|XP_003361328.1| PREDICTED: thioredoxin domain-containing protein 2-like [Sus
           scrofa].
          Length = 483

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)
 Frame = +1

Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
           VK + +  DF   L  AG RL  V F+   C PC  + P F S+S K+   +FLEVD  +
Sbjct: 380 VKVILTKEDFDVALKEAGERLVAVDFSTTWCRPCRAMKPIFRSLSVKHQDVLFLEVDADE 439

Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIK 600
           C+       I   PTF F++ + ++ ++ GA    L+EK++
Sbjct: 440 CEELVKDLKIVCIPTFHFYKKEEKVGEFSGA----LKEKLE 476


>ref|NP_001182301.1| thioredoxin domain-containing protein 8 [Sus scrofa].
          Length = 118

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 30/75 (40%), Positives = 45/75 (60%)
 Frame = +1

Query: 337 LSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISAT 516
           L  AG++L VV+F+   CGPC RI P F +MS +Y   +F  VDV   +  A T +I+A 
Sbjct: 15  LRSAGNKLVVVEFSATWCGPCKRIYPLFHAMSLQYRNVMFASVDVDSARELARTYHINAI 74

Query: 517 PTFLFFRNKVRIDQY 561
           PTF  F+   +++ +
Sbjct: 75  PTFQMFKQTQKVNLF 89


>ref|XP_003353652.1| PREDICTED: thioredoxin-like [Sus scrofa].
          Length = 70

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 29/53 (54%), Positives = 33/53 (62%)
 Frame = +1

Query: 325 FQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQ 483
           FQ  L+ AG +L VV F+   CGPC  I P F S+S KY   VFLEVDV  CQ
Sbjct: 7   FQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQ 59


>ref|XP_003356244.1| PREDICTED: PITH domain-containing protein 1-like [Sus scrofa].
          Length = 211

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
 Frame = +1

Query: 694  ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 855
            +CLNES E            R D + F+ESD DE+LL  + F   VKL  +   G D+  
Sbjct: 41   QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDS 100

Query: 856  GPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQ 1035
             P  ++++ N+P+ M F++ +R EP Q   L   D+  +     +  +F NV  ++I + 
Sbjct: 101  HPSEMRLYKNIPQ-MSFDDTDR-EPDQTFSLNR-DLTGELEYATKISRFSNVYHLSIHIS 157

Query: 1036 SNQGEEENTEFHILLLLGLRSQ 1101
             N G +    F+I    GLR +
Sbjct: 158  KNFGADTTKVFYI----GLRGE 175


>ref|NP_001230825.1| glutaredoxin 3 [Sus scrofa].
          Length = 334

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 31/103 (30%), Positives = 51/103 (49%)
 Frame = +1

Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
           V  VGS   F+  L      L VV F       C ++    + ++ ++PQ  F++++   
Sbjct: 12  VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 71

Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 606
               +    IS+ PTFLFF+N   ID+  GA A  L +K+++H
Sbjct: 72  VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRH 114


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,167,825
Number of extensions: 609992
Number of successful extensions: 1719
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1712
Number of HSP's successfully gapped: 8
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007774
         (1130 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_058072.2| thioredoxin-like protein 1 [Mus musculus].           526   e-149
Alignment   gi|NP_035790.1| thioredoxin [Mus musculus].                           85   9e-17
Alignment   gi|NP_001139474.1| thioredoxin domain-containing protein 2 isof...    72   1e-12
Alignment   gi|NP_705739.2| thioredoxin domain-containing protein 2 isoform...    72   1e-12
Alignment   gi|NP_080408.2| thioredoxin domain-containing protein 8 [Mus mu...    65   7e-11
Alignment   gi|NP_079687.3| PITH domain-containing protein 1 [Mus musculus].      61   1e-09
Alignment   gi|NP_075629.2| glutaredoxin-3 [Mus musculus].                        59   5e-09

>ref|NP_058072.2| thioredoxin-like protein 1 [Mus musculus].
          Length = 289

 Score =  526 bits (1355), Expect = e-149
 Identities = 257/272 (94%), Positives = 260/272 (95%)
 Frame = +1

Query: 289  MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 468
            MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD
Sbjct: 1    MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 60

Query: 469  VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 648
            VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNED DIP
Sbjct: 61   VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDADIP 120

Query: 649  KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM 828
            KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDM+FLESDCDEQLLITVAFNQPVKLYSM
Sbjct: 121  KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMSFLESDCDEQLLITVAFNQPVKLYSM 180

Query: 829  KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN 1008
            KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN
Sbjct: 181  KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN 240

Query: 1009 VNSVTIFVQSNQGEEENTEFHILLLLGLRSQA 1104
            VNSVT+FVQSNQGEEE T       +G   QA
Sbjct: 241  VNSVTLFVQSNQGEEETTRISYFTFIGTPVQA 272


>ref|NP_035790.1| thioredoxin [Mus musculus].
          Length = 105

 Score = 85.1 bits (209), Expect = 9e-17
 Identities = 42/103 (40%), Positives = 58/103 (56%)
 Frame = +1

Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
           VK + S   FQ  L+ AG +L VV F+   CGPC  I P F S+ +KY   VFLEVDV  
Sbjct: 2   VKLIESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDD 61

Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 606
           CQ  AA   +   PTF F++   ++ ++ GA+   LE  I ++
Sbjct: 62  CQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104


>ref|NP_001139474.1| thioredoxin domain-containing protein 2 isoform 1 [Mus musculus].
          Length = 550

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 34/102 (33%), Positives = 53/102 (51%)
 Frame = +1

Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
           V+ +    +F+  L  AG +L  V F+   CGPC  + P F S+S K+   +FLEVD   
Sbjct: 447 VRVIKDKEEFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTED 506

Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
           C+       I   PTF F++N+ ++ ++ GA    LE  I +
Sbjct: 507 CEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 548


>ref|NP_705739.2| thioredoxin domain-containing protein 2 isoform 2 [Mus musculus].
          Length = 543

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 34/102 (33%), Positives = 53/102 (51%)
 Frame = +1

Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
           V+ +    +F+  L  AG +L  V F+   CGPC  + P F S+S K+   +FLEVD   
Sbjct: 440 VRVIKDKEEFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTED 499

Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
           C+       I   PTF F++N+ ++ ++ GA    LE  I +
Sbjct: 500 CEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 541


>ref|NP_080408.2| thioredoxin domain-containing protein 8 [Mus musculus].
          Length = 153

 Score = 65.5 bits (158), Expect = 7e-11
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 22/130 (16%)
 Frame = +1

Query: 280 SLRMVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFL 459
           S  ++ VK + +  + +   S AG++L VV+F+ + CGPC  IAP F +MS KY    F 
Sbjct: 22  SQMLIMVKRIKNMSELKELFSDAGNKLVVVEFSAKWCGPCKTIAPVFQAMSLKYQNVTFA 81

Query: 460 EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQY----------------------QGAD 573
           +VDV   +  A   +I+  PTF  F+   ++  +                       GAD
Sbjct: 82  QVDVDSSKELAEHCDITMLPTFQMFKYTQKVTPFSRLKRVLCCLRSGPKSKMIFECHGAD 141

Query: 574 AVGLEEKIKQ 603
           A  LE+KI++
Sbjct: 142 AKQLEKKIQE 151


>ref|NP_079687.3| PITH domain-containing protein 1 [Mus musculus].
          Length = 211

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
 Frame = +1

Query: 694  ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 855
            +CLNES E            R D + F+ESD DE+LL  + F   VKL  +   G D+  
Sbjct: 41   QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGVIIMGEDDDS 100

Query: 856  GPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQ 1035
             P  ++++ N+P+ M F++ ER EP Q   L   DI  +     +  +F NV  ++I + 
Sbjct: 101  HPSEMRLYKNIPQ-MSFDDTER-EPEQTFSLNR-DITGELEYATKISRFSNVYHLSIHIS 157

Query: 1036 SNQGEEENTEFHILLLLGLRSQ 1101
             N G +    F+I    GLR +
Sbjct: 158  KNFGADTTKIFYI----GLRGE 175


>ref|NP_075629.2| glutaredoxin-3 [Mus musculus].
          Length = 337

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
 Frame = +1

Query: 292 VGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDV 471
           V V  VGS   F+  L      L VV F       C+++    + ++ ++P   F++++ 
Sbjct: 13  VAVVEVGSAQQFEELLRLKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEA 72

Query: 472 HQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLEN---DPGSNE 633
                 +    IS+ PTFLFF+N  ++D+  GA A  L +K+++H+ +    P +NE
Sbjct: 73  EAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGAFPPSTNE 129


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,500,951
Number of extensions: 782749
Number of successful extensions: 2341
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2322
Number of HSP's successfully gapped: 7
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007774
         (1130 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004777.1| thioredoxin-like protein 1 [Homo sapiens].           528   e-150
Alignment   gi|NP_003320.2| thioredoxin [Homo sapiens].                           86   6e-17
Alignment   gi|NP_115619.4| thioredoxin domain-containing protein 2 isoform...    74   2e-13
Alignment   gi|NP_001091999.1| thioredoxin domain-containing protein 2 isof...    74   2e-13
Alignment   gi|NP_001003936.1| thioredoxin domain-containing protein 8 [Hom...    65   1e-10
Alignment   gi|NP_065095.2| PITH domain-containing protein 1 [Homo sapiens].      61   2e-09
Alignment   gi|NP_001186797.1| glutaredoxin-3 [Homo sapiens].                     59   8e-09
Alignment   gi|NP_006532.2| glutaredoxin-3 [Homo sapiens].                        59   8e-09
Alignment   gi|NP_001139021.1| thioredoxin domain-containing protein 5 isof...    50   5e-06
Alignment   gi|NP_110437.2| thioredoxin domain-containing protein 5 isoform...    50   5e-06

>ref|NP_004777.1| thioredoxin-like protein 1 [Homo sapiens].
          Length = 289

 Score =  528 bits (1360), Expect = e-150
 Identities = 259/272 (95%), Positives = 260/272 (95%)
 Frame = +1

Query: 289  MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 468
            MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD
Sbjct: 1    MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 60

Query: 469  VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 648
            VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP
Sbjct: 61   VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIP 120

Query: 649  KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSM 828
            KGYMDLMPFINKAGCECLNESDEHGFDNCLRKD TFLESDCDEQLLITVAFNQPVKLYSM
Sbjct: 121  KGYMDLMPFINKAGCECLNESDEHGFDNCLRKDTTFLESDCDEQLLITVAFNQPVKLYSM 180

Query: 829  KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN 1008
            KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN
Sbjct: 181  KFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQN 240

Query: 1009 VNSVTIFVQSNQGEEENTEFHILLLLGLRSQA 1104
            VNSVTIFVQSNQGEEE T       +G   QA
Sbjct: 241  VNSVTIFVQSNQGEEETTRISYFTFIGTPVQA 272


>ref|NP_003320.2| thioredoxin [Homo sapiens].
          Length = 105

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 42/102 (41%), Positives = 56/102 (54%)
 Frame = +1

Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
           VK + S   FQ  L  AG +L VV F+   CGPC  I P F S+S KY   +FLEVDV  
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61

Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQ 603
           CQ  A+   +   PTF FF+   ++ ++ GA+   LE  I +
Sbjct: 62  CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103


>ref|NP_115619.4| thioredoxin domain-containing protein 2 isoform 1 [Homo sapiens].
          Length = 486

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 39/101 (38%), Positives = 55/101 (54%)
 Frame = +1

Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
           VK + S  DF+  L  AG RL  V F+   CGPC  I P F ++S K+   VFLEVD   
Sbjct: 383 VKVILSKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADN 442

Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIK 600
           C+       I   PTF F++ + ++D+  GA    L+EK++
Sbjct: 443 CEEVVRECAIMCVPTFQFYKKEEKVDELCGA----LKEKLE 479


>ref|NP_001091999.1| thioredoxin domain-containing protein 2 isoform 2 [Homo sapiens].
          Length = 553

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 39/101 (38%), Positives = 55/101 (54%)
 Frame = +1

Query: 298 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 477
           VK + S  DF+  L  AG RL  V F+   CGPC  I P F ++S K+   VFLEVD   
Sbjct: 450 VKVILSKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADN 509

Query: 478 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIK 600
           C+       I   PTF F++ + ++D+  GA    L+EK++
Sbjct: 510 CEEVVRECAIMCVPTFQFYKKEEKVDELCGA----LKEKLE 546


>ref|NP_001003936.1| thioredoxin domain-containing protein 8 [Homo sapiens].
          Length = 115

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 31/77 (40%), Positives = 45/77 (58%)
 Frame = +1

Query: 322 DFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATN 501
           +F+  L+ AG +LAVV+F+ + CGPC R+ P F +MS KY    F  VDV+     A T 
Sbjct: 10  EFKTFLTAAGHKLAVVQFSSKRCGPCKRMFPVFHAMSVKYQNVFFANVDVNNSPELAETC 69

Query: 502 NISATPTFLFFRNKVRI 552
           +I   PTF  F+   ++
Sbjct: 70  HIKTIPTFQMFKKSQKV 86


>ref|NP_065095.2| PITH domain-containing protein 1 [Homo sapiens].
          Length = 211

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
 Frame = +1

Query: 694  ECLNESDEHGFDNCL-----RKDMT-FLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 855
            +CLNES E            R D + F+ESD DE+LL  + F   VKL  +   G D+  
Sbjct: 41   QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDS 100

Query: 856  GPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQ 1035
             P  ++++ N+P+ M F++ ER EP Q   L   D+  +     +  +F NV  ++I + 
Sbjct: 101  HPSEMRLYKNIPQ-MSFDDTER-EPDQTFSLNR-DLTGELEYATKISRFSNVYHLSIHIS 157

Query: 1036 SNQGEEENTEFHILLLLGLRSQ 1101
             N G +    F+I    GLR +
Sbjct: 158  KNFGADTTKVFYI----GLRGE 175


>ref|NP_001186797.1| glutaredoxin-3 [Homo sapiens].
          Length = 335

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
 Frame = +1

Query: 289 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 468
           +  V+ VGS   F+  L      L VV F       C ++    + ++ + PQ  F++++
Sbjct: 10  VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLE 69

Query: 469 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLEND---PGSNE 633
                  +    IS+ PTFLFF+N  +ID+  GA A  L +K+++H  +    P +NE
Sbjct: 70  AEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANE 127


>ref|NP_006532.2| glutaredoxin-3 [Homo sapiens].
          Length = 335

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
 Frame = +1

Query: 289 MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVD 468
           +  V+ VGS   F+  L      L VV F       C ++    + ++ + PQ  F++++
Sbjct: 10  VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLE 69

Query: 469 VHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLEND---PGSNE 633
                  +    IS+ PTFLFF+N  +ID+  GA A  L +K+++H  +    P +NE
Sbjct: 70  AEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANE 127


>ref|NP_001139021.1| thioredoxin domain-containing protein 5 isoform 3 [Homo sapiens].
          Length = 324

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
 Frame = +1

Query: 283 LRMVGVKPVGSDPDFQP-----------ELSGAGSRLAV------VKFTMRGCGPCLRIA 411
           L+ +  +PV  +P+ +P           ELS +   L V      +KF    CG C  +A
Sbjct: 57  LQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALA 116

Query: 412 PAFSSMSN--KYPQAVFL-EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQG-ADAV 579
           P +  ++   ++ + V + +VD  Q     + N +   PT L+FR+  ++DQY+G  D  
Sbjct: 117 PTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLE 176

Query: 580 GLEEKIKQHLENDPGSNEDTDIPK--GYMDLMPFINKAGCECLNESDEHGFDNCLRKDMT 753
            L E ++  L+       +T  P     +   P  +K     L E++   FD+ + + +T
Sbjct: 177 SLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKGTVLALTENN---FDDTIAEGIT 233

Query: 754 FLE 762
           F++
Sbjct: 234 FIK 236


>ref|NP_110437.2| thioredoxin domain-containing protein 5 isoform 1 precursor [Homo
           sapiens].
          Length = 432

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
 Frame = +1

Query: 283 LRMVGVKPVGSDPDFQP-----------ELSGAGSRLAV------VKFTMRGCGPCLRIA 411
           L+ +  +PV  +P+ +P           ELS +   L V      +KF    CG C  +A
Sbjct: 165 LQTLNEEPVTPEPEVEPPSAPELKQGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALA 224

Query: 412 PAFSSMSN--KYPQAVFL-EVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQG-ADAV 579
           P +  ++   ++ + V + +VD  Q     + N +   PT L+FR+  ++DQY+G  D  
Sbjct: 225 PTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYKGKRDLE 284

Query: 580 GLEEKIKQHLENDPGSNEDTDIPK--GYMDLMPFINKAGCECLNESDEHGFDNCLRKDMT 753
            L E ++  L+       +T  P     +   P  +K     L E++   FD+ + + +T
Sbjct: 285 SLREYVESQLQRTETGATETVTPSEAPVLAAEPEADKGTVLALTENN---FDDTIAEGIT 341

Query: 754 FLE 762
           F++
Sbjct: 342 FIK 344


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,188,712
Number of extensions: 921413
Number of successful extensions: 2574
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2564
Number of HSP's successfully gapped: 10
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007774
         (1130 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                         688   0.0  
Sscrofa_Chr15                                                         178   4e-42

>Sscrofa_Chr01 
||          Length = 315321322

 Score =  688 bits (347), Expect = 0.0
 Identities = 347/347 (100%)
 Strand = Plus / Minus

                                                                             
Query: 42        tggctgctgggtgccgcaagccttccctttcctcgcctctcgtttcccccctcccatccc 101
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116763446 tggctgctgggtgccgcaagccttccctttcctcgcctctcgtttcccccctcccatccc 116763387

                                                                             
Query: 102       gtttcctcggccgctccgctccctggcgtgactcggcactgagagccccgggagaagacg 161
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116763386 gtttcctcggccgctccgctccctggcgtgactcggcactgagagccccgggagaagacg 116763327

                                                                             
Query: 162       ccacggtcgccacctcctgtgtccaggcctcggccttcctgagtctacccccgtcccctc 221
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116763326 ccacggtcgccacctcctgtgtccaggcctcggccttcctgagtctacccccgtcccctc 116763267

                                                                             
Query: 222       ccgggtcgtcttctccttcagttttgaaaccggtggcgtcgcggccaccttgccaggctc 281
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116763266 ccgggtcgtcttctccttcagttttgaaaccggtggcgtcgcggccaccttgccaggctc 116763207

                                                                             
Query: 282       tctgagaatggtaggtgtaaagccggtcgggagtgacccggatttccagccggagctgag 341
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116763206 tctgagaatggtaggtgtaaagccggtcgggagtgacccggatttccagccggagctgag 116763147

                                                                
Query: 342       cggcgcgggctccagactcgctgtggtcaaattcaccatgcgagggt 388
                 |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116763146 cggcgcgggctccagactcgctgtggtcaaattcaccatgcgagggt 116763100



 Score =  349 bits (176), Expect = 2e-93
 Identities = 176/176 (100%)
 Strand = Plus / Minus

                                                                             
Query: 482       agggaactgctgccaccaacaacatatcagcgacacctacatttttgtttttccgaaaca 541
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116747486 agggaactgctgccaccaacaacatatcagcgacacctacatttttgtttttccgaaaca 116747427

                                                                             
Query: 542       aagtgagaattgatcagtatcaaggagcagatgccgtgggattagaagaaaaaatcaagc 601
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116747426 aagtgagaattgatcagtatcaaggagcagatgccgtgggattagaagaaaaaatcaagc 116747367

                                                                         
Query: 602       agcacttagaaaacgaccctggaagcaatgaggacacagatattccaaaaggctat 657
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116747366 agcacttagaaaacgaccctggaagcaatgaggacacagatattccaaaaggctat 116747311



 Score =  345 bits (174), Expect = 3e-92
 Identities = 174/174 (100%)
 Strand = Plus / Minus

                                                                             
Query: 850       ggtcagggtcctaaatatgtaaaaatttttatcaatctaccccgatctatggattttgaa 909
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116734126 ggtcagggtcctaaatatgtaaaaatttttatcaatctaccccgatctatggattttgaa 116734067

                                                                             
Query: 910       gaggcagaaagaagcgaaccaactcaagctctggaactaacagaggatgatattaaagaa 969
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116734066 gaggcagaaagaagcgaaccaactcaagctctggaactaacagaggatgatattaaagaa 116734007

                                                                       
Query: 970       gatggtattgttccacttcgttatgttaagtttcagaatgttaacagtgtaact 1023
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116734006 gatggtattgttccacttcgttatgttaagtttcagaatgttaacagtgtaact 116733953



 Score =  244 bits (123), Expect = 9e-62
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                             
Query: 658       atggatttaatgccttttattaacaaagctggctgtgaatgtcttaatgaaagtgacgag 717
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116738139 atggatttaatgccttttattaacaaagctggctgtgaatgtcttaatgaaagtgacgag 116738080

                                                                             
Query: 718       catggatttgacaactgtttacgaaaagacatgaccttcctggaatctgattgtgatgaa 777
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116738079 catggatttgacaactgtttacgaaaagacatgaccttcctggaatctgattgtgatgaa 116738020

                    
Query: 778       cag 780
                 |||
Sbjct: 116738019 cag 116738017



 Score =  196 bits (99), Expect = 2e-47
 Identities = 99/99 (100%)
 Strand = Plus / Minus

                                                                             
Query: 386       ggtgtggaccatgtttaaggattgccccagcattcagttctatgagtaataagtatccac 445
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116748999 ggtgtggaccatgtttaaggattgccccagcattcagttctatgagtaataagtatccac 116748940

                                                        
Query: 446       aagcagttttcttggaagtagatgtacatcagtgtcagg 484
                 |||||||||||||||||||||||||||||||||||||||
Sbjct: 116748939 aagcagttttcttggaagtagatgtacatcagtgtcagg 116748901



 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Minus

                                                                             
Query: 777       acagctacttattactgtggcattcaatcagcctgttaagctttactcaatgaaatttca 836
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116736786 acagctacttattactgtggcattcaatcagcctgttaagctttactcaatgaaatttca 116736727

                                 
Query: 837       agggccagataatggt 852
                 ||||||||||||||||
Sbjct: 116736726 agggccagataatggt 116736711



 Score =  129 bits (65), Expect = 4e-27
 Identities = 101/109 (92%), Gaps = 3/109 (2%)
 Strand = Plus / Minus

                                                                             
Query: 1024      atatttgttcagtccaatcaaggtgaagaagaaaacaca-gaatttcatattttactttt 1082
                 ||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||
Sbjct: 116730843 atatttgttcagtccaatcaaggtgaagaagaaacaacaagaatttcatattttactttt 116730784

                                                                  
Query: 1083      attgggactccggtcccaggc-accaatatgaatgactttcaacgagta 1130
                 |||||||||||||| |||||| || ||||||||||||||  ||||||||
Sbjct: 116730783 attgggactccggt-ccaggcaacaaatatgaatgacttcaaacgagta 116730736


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  178 bits (90), Expect = 4e-42
 Identities = 179/205 (87%), Gaps = 4/205 (1%)
 Strand = Plus / Minus

                                                                            
Query: 878      ttatcaatctaccccgatctatggattttgaagaggcagaaagaagcgaaccaactcaag 937
                |||||||||||||| ||||||||||||| ||||||||| |||||||  ||||||||||||
Sbjct: 53836610 ttatcaatctaccctgatctatggatttcgaagaggcaaaaagaagtaaaccaactcaag 53836551

                                                                            
Query: 938      ctctggaactaacagaggatgatattaaagaagatggtattgt--tccacttcgttatgt 995
                ||||||| || |||||||| |||||||| ||  |||| |||||  ||| | |||| ||||
Sbjct: 53836550 ctctggagctcacagaggacgatattaa-gagaatggcattgtcctccccctcgtcatgt 53836492

                                                                            
Query: 996      taagtttcagaatgttaacagtgtaactatatttgttcagtccaatcaaggtgaagaaga 1055
                ||||||||||| ||||| | ||||| |||||||||||||||||||||||| |||||||||
Sbjct: 53836491 taagtttcagagtgttagcggtgtagctatatttgttcagtccaatcaagatgaagaaga 53836432

                                         
Query: 1056     aaacac-agaatttcatattttact 1079
                ||  || |||||||| |||||||||
Sbjct: 53836431 aatgacgagaatttcttattttact 53836407


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,571,379
Number of extensions: 230
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 8
Length of query: 1130
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1109
Effective length of database: 2,808,413,156
Effective search space: 3114530190004
Effective search space used: 3114530190004
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)