Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007775
(994 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776693.1| craniofacial development protein 1 [Bos taurus]. 359 2e-99
Alignment gi|NP_001071387.1| bucentaur-2 [Bos taurus]. 143 3e-34
Alignment gi|NP_777225.1| craniofacial development protein 2 [Bos taurus]. 133 2e-31
>ref|NP_776693.1| craniofacial development protein 1 [Bos taurus].
Length = 297
Score = 359 bits (921), Expect = 2e-99
Identities = 193/260 (74%), Positives = 203/260 (78%)
Frame = +2
Query: 209 YVPSGGEYSEDDVSELVKEDEVDGDEQTQKTKGKKRKAQSIPARKRKQGGLSFXXXXXXX 388
YVPSGGEYSEDD++ELVKEDEVDG+E+TQKTKG KRKA+S+ ARKRKQGGLS
Sbjct: 18 YVPSGGEYSEDDINELVKEDEVDGEEETQKTKGTKRKAESVLARKRKQGGLSLEEDEEDA 77
Query: 389 XXXXXXXXXXXXXXXXXXXXKGIGSEDARKKKEDELWASFLNDVGPKSKVPPSTHVKKGX 568
KG+ SEDARKKKEDELWASFLNDVGPKSKVPPSTHVK G
Sbjct: 78 NEESGGSSSEEEDAATEQQ-KGVESEDARKKKEDELWASFLNDVGPKSKVPPSTHVKTGE 136
Query: 569 XXXXXXXXKLLVKAEDLEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNE 748
L VKAE LEKPKETEKVKITKVFDFAGEEVRV KEVDATSKEAKSFFKQNE
Sbjct: 137 ETEETSSSHL-VKAERLEKPKETEKVKITKVFDFAGEEVRVIKEVDATSKEAKSFFKQNE 195
Query: 749 KEKPQANVPSALPSLAAGSGLKRSGGMSSLLGKIGAKKQKMSTLEKSKLDWESFKXXXXX 928
KEKPQ+NVP A+PSL AGSGLKRS GMSSLLGKIGAKKQKMSTLEKSKLDWESFK
Sbjct: 196 KEKPQSNVPPAVPSLPAGSGLKRSSGMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGI 255
Query: 929 XXXLAIHNRGEEGYIERKLF 988
LAIHNRG+EGYIERK F
Sbjct: 256 GEELAIHNRGKEGYIERKAF 275
>ref|NP_001071387.1| bucentaur-2 [Bos taurus].
Length = 634
Score = 143 bits (360), Expect = 3e-34
Identities = 82/160 (51%), Positives = 99/160 (61%)
Frame = +2
Query: 209 YVPSGGEYSEDDVSELVKEDEVDGDEQTQKTKGKKRKAQSIPARKRKQGGLSFXXXXXXX 388
Y PSGGE ED V+ELVKE E+ +E+TQKTKG KRKA+SI ARKRK GLS
Sbjct: 18 YAPSGGECHEDAVNELVKEGEMGAEEETQKTKGTKRKAESILARKRKHSGLSPQHEEEED 77
Query: 389 XXXXXXXXXXXXXXXXXXXXKGIGSEDARKKKEDELWASFLNDVGPKSKVPPSTHVKKGX 568
KG SEDAR+++E+E+ AS + DV PKS+VPPST VK G
Sbjct: 78 ANRESGGSISEKEDVAAEQEKGAESEDAREEEEEEMLASSIGDVEPKSEVPPSTQVKTGE 137
Query: 569 XXXXXXXXKLLVKAEDLEKPKETEKVKITKVFDFAGEEVR 688
K +VK E+ EKPKE E+VK+TKVFD AGE+VR
Sbjct: 138 ENKEMASSK-VVKTEEQEKPKEPEEVKVTKVFDIAGEKVR 176
Score = 68.2 bits (165), Expect = 1e-11
Identities = 41/99 (41%), Positives = 59/99 (59%)
Frame = +2
Query: 593 KLLVKAEDLEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNEKEKPQANV 772
K + K + KP+ ++ V +G V+KEV TS+E KS FKQNEKE+PQ++V
Sbjct: 513 KSVFKQTEKGKPQANVPSNVSSVPGGSG----VSKEVGETSQEGKSVFKQNEKEEPQSSV 568
Query: 773 PSALPSLAAGSGLKRSGGMSSLLGKIGAKKQKMSTLEKS 889
PSA+PSL AGSG+ + G +S GK K+ + + S
Sbjct: 569 PSAVPSLPAGSGVSKEVGETSQEGKSVFKQNEKEEPQSS 607
Score = 61.6 bits (148), Expect = 1e-09
Identities = 34/72 (47%), Positives = 48/72 (66%)
Frame = +2
Query: 593 KLLVKAEDLEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNEKEKPQANV 772
K + K + E+P+ + + + +G V+KEV TS+E KS FKQNEKE+PQ++V
Sbjct: 553 KSVFKQNEKEEPQSSVPSAVPSLPAGSG----VSKEVGETSQEGKSVFKQNEKEEPQSSV 608
Query: 773 PSALPSLAAGSG 808
PSA+PSL AGSG
Sbjct: 609 PSAVPSLPAGSG 620
Score = 58.9 bits (141), Expect = 7e-09
Identities = 33/68 (48%), Positives = 42/68 (61%)
Frame = +2
Query: 686 RVTKEVDATSKEAKSFFKQNEKEKPQANVPSALPSLAAGSGLKRSGGMSSLLGKIGAKKQ 865
R T EV TS+EAKS FKQ EK KPQANVPS + S+ GSG+ + G +S GK K+
Sbjct: 500 RGTNEVGETSQEAKSVFKQTEKGKPQANVPSNVSSVPGGSGVSKEVGETSQEGKSVFKQN 559
Query: 866 KMSTLEKS 889
+ + S
Sbjct: 560 EKEEPQSS 567
>ref|NP_777225.1| craniofacial development protein 2 [Bos taurus].
Length = 592
Score = 133 bits (335), Expect = 2e-31
Identities = 90/208 (43%), Positives = 121/208 (58%), Gaps = 7/208 (3%)
Frame = +2
Query: 212 VPSGGEYSEDDVSELVKEDEVDGDEQTQKTKGKKRKAQSIPARKRKQGGLSFXXXXXXXX 391
VP GGE EDD++ELVKEDEVDG+E+TQKTKG KRKA+SI ARKRKQG LS
Sbjct: 18 VPLGGECHEDDINELVKEDEVDGEEETQKTKGTKRKAESILARKRKQGRLSLDQEEEEDA 77
Query: 392 XXXXXXXXXXXXXXXXXXXKGIGSEDARKKKEDELWASFLNDVGPKSKVPPSTHVKKGXX 571
KG SEDAR+++ D L AS ++D PKS++PPST K G
Sbjct: 78 SRESGGRIIEKEDAAAEQEKGAESEDARQEEADVL-ASSVSDAEPKSELPPSTQTKTGEE 136
Query: 572 XXXXXXXKLLVKAEDLEKPKETEKVKITKVFDFAGEEVR-VTKEVDATSKEAKSFFKQNE 748
LVK E+LEKPK+ E+VK+TK AGEEVR +T++ + + +K +++E
Sbjct: 137 TEETSSSN-LVKVEELEKPKKAEEVKLTK-SPLAGEEVRFLTQQGRLSGRTSKDEPRRSE 194
Query: 749 ------KEKPQANVPSALPSLAAGSGLK 814
E+ +A+ ++ + AAG K
Sbjct: 195 GVQHATGEERRADTNTSSKNEAAGQKWK 222
Score = 67.8 bits (164), Expect = 1e-11
Identities = 37/72 (51%), Positives = 50/72 (69%)
Frame = +2
Query: 593 KLLVKAEDLEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNEKEKPQANV 772
K ++K + EKP+ ++ V +G +TKEV TS+EAKS FKQ+EK+KPQANV
Sbjct: 511 KSVLKQNEKEKPEANVPSTVSSVPGGSG----MTKEVGETSQEAKSVFKQDEKDKPQANV 566
Query: 773 PSALPSLAAGSG 808
PS++PSL AGSG
Sbjct: 567 PSSVPSLPAGSG 578
Score = 62.4 bits (150), Expect = 6e-10
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = +2
Query: 686 RVTKEVDATSKEAKSFFKQNEKEKPQANVPSALPSLAAGSGLKRSGGMSS 835
RVT E DAT++EAKS KQNEKEKP+ANVPS + S+ GSG+ + G +S
Sbjct: 498 RVTNEEDATNEEAKSVLKQNEKEKPEANVPSTVSSVPGGSGMTKEVGETS 547
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,053,065
Number of extensions: 667610
Number of successful extensions: 2652
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2619
Number of HSP's successfully gapped: 8
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007775
(994 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546829.2| PREDICTED: similar to craniofacial development ... 372 e-103
>ref|XP_546829.2| PREDICTED: similar to craniofacial development protein 1 [Canis
familiaris].
Length = 299
Score = 372 bits (956), Expect = e-103
Identities = 196/260 (75%), Positives = 204/260 (78%)
Frame = +2
Query: 209 YVPSGGEYSEDDVSELVKEDEVDGDEQTQKTKGKKRKAQSIPARKRKQGGLSFXXXXXXX 388
YVPSGGEYSEDDV+ELVKEDEVDG+EQTQK KGKKRKAQSIPARKRKQGG S
Sbjct: 18 YVPSGGEYSEDDVNELVKEDEVDGEEQTQKAKGKKRKAQSIPARKRKQGGFSLEEEEEED 77
Query: 389 XXXXXXXXXXXXXXXXXXXXKGIGSEDARKKKEDELWASFLNDVGPKSKVPPSTHVKKGX 568
KGIGSEDARKKKEDELWASFLNDVGPK KV P+T V +G
Sbjct: 78 ANEESEGNSSEEEDGAAEQEKGIGSEDARKKKEDELWASFLNDVGPKPKVSPNTQVNRGE 137
Query: 569 XXXXXXXXKLLVKAEDLEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNE 748
KLLV+AE+LEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNE
Sbjct: 138 KPEETSSSKLLVRAEELEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNE 197
Query: 749 KEKPQANVPSALPSLAAGSGLKRSGGMSSLLGKIGAKKQKMSTLEKSKLDWESFKXXXXX 928
KEKPQA VP+ LPSL AGSGLKRS GMSSLLGKIGAKKQKMSTLEKSKLDWESFK
Sbjct: 198 KEKPQATVPAPLPSLPAGSGLKRSSGMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGI 257
Query: 929 XXXLAIHNRGEEGYIERKLF 988
LAIHNRG+EGYIERK F
Sbjct: 258 SEELAIHNRGKEGYIERKAF 277
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,311,356
Number of extensions: 669013
Number of successful extensions: 3086
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3005
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007775
(994 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126900.2| PREDICTED: LOW QUALITY PROTEIN: craniofacial... 322 3e-88
Alignment gi|XP_003355793.1| PREDICTED: craniofacial development protein ... 103 2e-22
Alignment gi|XP_003355794.1| PREDICTED: craniofacial development protein ... 88 8e-18
>ref|XP_003126900.2| PREDICTED: LOW QUALITY PROTEIN: craniofacial development protein 1,
partial [Sus scrofa].
Length = 230
Score = 322 bits (824), Expect = 3e-88
Identities = 172/218 (78%), Positives = 177/218 (81%), Gaps = 1/218 (0%)
Frame = +2
Query: 209 YVPSGGEYSEDDVSELVKEDEVDGDEQTQKTKGKKRKAQSIPARKRKQGGLSFXXXXXXX 388
YV SGGEYSEDDVSELVKEDEVDGDEQTQKTKGKKRKAQSIPARKRKQGGLSF
Sbjct: 1 YVISGGEYSEDDVSELVKEDEVDGDEQTQKTKGKKRKAQSIPARKRKQGGLSFEEEEEEN 60
Query: 389 XXXXXXXXXXXXXXXXXXXXKGIGSEDARKKKEDELWASFLNDVGPKSKVPPSTHVKKGX 568
KGIGSEDARKKKEDELWASFLNDVGPKSKVPPSTHVKKG
Sbjct: 61 ANEESGGSSSEEEDSAAEQEKGIGSEDARKKKEDELWASFLNDVGPKSKVPPSTHVKKGE 120
Query: 569 XXXXXXXXKLLVKAEDLEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNE 748
KLLVKAEDLEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNE
Sbjct: 121 ETEETSSSKLLVKAEDLEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNE 180
Query: 749 KEKPQANVPSALPSLAAGSG-LKRSGGMSSLLGKIGAK 859
KEKPQANVPSALPSLAAGSG +K+S GM+S+LGK+ K
Sbjct: 181 KEKPQANVPSALPSLAAGSGXVKKSAGMTSVLGKLSRK 218
>ref|XP_003355793.1| PREDICTED: craniofacial development protein 1-like isoform 1 [Sus
scrofa].
Length = 117
Score = 103 bits (256), Expect = 2e-22
Identities = 53/66 (80%), Positives = 54/66 (81%)
Frame = +2
Query: 791 LAAGSGLKRSGGMSSLLGKIGAKKQKMSTLEKSKLDWESFKXXXXXXXXLAIHNRGEEGY 970
LAA LKRSGGMSSLLGKIGAKKQKMSTLEKSKLDWESFK LAIHNRG+EGY
Sbjct: 30 LAANKRLKRSGGMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGIGEELAIHNRGKEGY 89
Query: 971 IERKLF 988
IERK F
Sbjct: 90 IERKAF 95
>ref|XP_003355794.1| PREDICTED: craniofacial development protein 1-like isoform 2 [Sus
scrofa].
Length = 76
Score = 87.8 bits (216), Expect = 8e-18
Identities = 44/54 (81%), Positives = 45/54 (83%)
Frame = +2
Query: 827 MSSLLGKIGAKKQKMSTLEKSKLDWESFKXXXXXXXXLAIHNRGEEGYIERKLF 988
MSSLLGKIGAKKQKMSTLEKSKLDWESFK LAIHNRG+EGYIERK F
Sbjct: 1 MSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAF 54
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,933,224
Number of extensions: 461691
Number of successful extensions: 1570
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1562
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007775
(994 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035931.1| craniofacial development protein 1 [Mus musculu... 324 7e-89
>ref|NP_035931.1| craniofacial development protein 1 [Mus musculus].
Length = 295
Score = 324 bits (830), Expect = 7e-89
Identities = 173/260 (66%), Positives = 190/260 (73%)
Frame = +2
Query: 209 YVPSGGEYSEDDVSELVKEDEVDGDEQTQKTKGKKRKAQSIPARKRKQGGLSFXXXXXXX 388
Y+PSGGEYSEDDV+ELVKEDEVDG+EQ +KTKGK+RKAQ IPARKRKQ GL
Sbjct: 18 YLPSGGEYSEDDVNELVKEDEVDGEEQAEKTKGKRRKAQGIPARKRKQSGLLLEEEEDGK 77
Query: 389 XXXXXXXXXXXXXXXXXXXXKGIGSEDARKKKEDELWASFLNDVGPKSKVPPSTHVKKGX 568
G+GSE+ARKKKEDELWASFLNDVGPKSK P + K
Sbjct: 78 EDSGGSSSEEDEEEQEG----GLGSENARKKKEDELWASFLNDVGPKSKAAPGSQTKVAE 133
Query: 569 XXXXXXXXKLLVKAEDLEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNE 748
K LVKA++L+KP+E+EKVKITKVFDFAGEEVRVTKEVDA SKEAKSF KQ E
Sbjct: 134 ETEEISSNKPLVKADELDKPRESEKVKITKVFDFAGEEVRVTKEVDAASKEAKSFLKQTE 193
Query: 749 KEKPQANVPSALPSLAAGSGLKRSGGMSSLLGKIGAKKQKMSTLEKSKLDWESFKXXXXX 928
+EKPQA V S L AGSG+KR+ GMSSLLGKIGAKKQKMSTLEKSKLDWESFK
Sbjct: 194 REKPQALVTSPATPLPAGSGIKRASGMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGI 253
Query: 929 XXXLAIHNRGEEGYIERKLF 988
LAIHNRG+EGYIERK F
Sbjct: 254 GEELAIHNRGKEGYIERKAF 273
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,289,818
Number of extensions: 563127
Number of successful extensions: 2398
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2382
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007775
(994 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006315.1| craniofacial development protein 1 [Homo sapien... 389 e-108
>ref|NP_006315.1| craniofacial development protein 1 [Homo sapiens].
Length = 299
Score = 389 bits (999), Expect = e-108
Identities = 205/260 (78%), Positives = 211/260 (81%)
Frame = +2
Query: 209 YVPSGGEYSEDDVSELVKEDEVDGDEQTQKTKGKKRKAQSIPARKRKQGGLSFXXXXXXX 388
YVPSGGEYSEDDV+ELVKEDEVDG+EQTQKT+GKKRKAQSIPARKR+QGGLS
Sbjct: 18 YVPSGGEYSEDDVNELVKEDEVDGEEQTQKTQGKKRKAQSIPARKRRQGGLSLEEEEEED 77
Query: 389 XXXXXXXXXXXXXXXXXXXXKGIGSEDARKKKEDELWASFLNDVGPKSKVPPSTHVKKGX 568
KGIGSEDARKKKEDELWASFLNDVGPKSKVPPST VKKG
Sbjct: 78 ANSESEGSSSEEEDDAAEQEKGIGSEDARKKKEDELWASFLNDVGPKSKVPPSTQVKKGE 137
Query: 569 XXXXXXXXKLLVKAEDLEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNE 748
KLLVKAE+LEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNE
Sbjct: 138 ETEETSSSKLLVKAEELEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQNE 197
Query: 749 KEKPQANVPSALPSLAAGSGLKRSGGMSSLLGKIGAKKQKMSTLEKSKLDWESFKXXXXX 928
KEKPQANVPSALPSL AGSGLKRS GMSSLLGKIGAKKQKMSTLEKSKLDWESFK
Sbjct: 198 KEKPQANVPSALPSLPAGSGLKRSSGMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGI 257
Query: 929 XXXLAIHNRGEEGYIERKLF 988
LAIHNRG+EGYIERK F
Sbjct: 258 GEELAIHNRGKEGYIERKAF 277
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,710,926
Number of extensions: 660870
Number of successful extensions: 2661
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2636
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007775
(994 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 569 e-159
Sscrofa_Chr06 432 e-118
>Sscrofa_Chr01
|| Length = 315321322
Score = 569 bits (287), Expect = e-159
Identities = 658/781 (84%), Gaps = 31/781 (3%)
Strand = Plus / Plus
Query: 180 acttctccacctcggaggaggacgaggactacgtgccgtcgggtggagagtatagtgaag 239
|||||||||| | |||||||| |||||||||| || || ||||||||||||||||||||
Sbjct: 90032968 acttctccactttggaggaggcagaggactacgggcggtagggtggagagtatagtgaag 90033027
Query: 240 atgatgtaagtgaactagtgaaggaagatgaagtggatggtgacgagcagacacagaaaa 299
|||| ||| |||| | |||||||||||||||||||||||||| ||| |||||
Sbjct: 90033028 atgacttaaatgaattcgtgaaggaagatgaagtggatggtgaagag--------gaaaa 90033079
Query: 300 ccaaagggnnnnnnngaaaggctcagagcattccggccaggaagagaaaacaaggtggcc 359
|||| ||| |||||||||||| || | ||||||| |||||||||||||| ||||
Sbjct: 90033080 ccaa-ggggaaaaaagaaaggctcagaccactacggccagaaagagaaaacaagggggcc 90033138
Query: 360 tctcatttgaagaagaggaagaggaaaatgccaacgaggaatctggaggaagtagcagtg 419
||||||| |||||||| || | ||| ||| | |||||||||||| ||||||||||||
Sbjct: 90033139 tctcattagaagaagaagaggggga---tgctatggaggaatctggaagaagtagcagtg 90033195
Query: 420 aggaggaagattcagctgcagagcaggaaaaaggcattgggtcagaggatgcaaggaaaa 479
||||||||||| |||||||||||||||| ||||||| ||||||||||||| |||| ||
Sbjct: 90033196 aggaggaagatgcagctgcagagcaggagaaaggcagtgggtcagaggattcaag---aa 90033252
Query: 480 agaaggaggatgagctgtgggctagtttcctcaacgatgtaggaccaaaatccaaagtgc 539
| |||||||||||||| |||||||||||||| || |||||||||||||||| |||||||
Sbjct: 90033253 aaaaggaggatgagctatgggctagtttccttaatgatgtaggaccaaaataaaaagtgc 90033312
Query: 540 ctccaagtacacatgttaaaaaaggagaggagactgaagagacaagttcaagtaagttgt 599
||| |||| ||| ||| || ||||||||||||||||||||||||||||| ||| ||||
Sbjct: 90033313 ttccgagtatacaagtt--aacaggagaggagactgaagagacaagttcaaataaattgt 90033370
Query: 600 tggtcaaagcagaagatctggagaaacctaaagaaacagaaaaagtta-aaattaccaag 658
|||||||||||||||| |||||||| ||||||||| |||||||| | |||| ||||||
Sbjct: 90033371 tggtcaaagcagaagaggtggagaaatctaaagaaagagaaaaagggagaaatcaccaag 90033430
Query: 659 gtgtttgattttgccggtgaagaagtcagggtgactaaggaa-gtggatgctacatctaa 717
|||| ||| ||||| ||||||||||| ||||| ||||||| ||| |||| ||| |||
Sbjct: 90033431 gtgtctgactttgctaatgaagaagtcaaggtgattaaggaaggtgcatgccacacgtaa 90033490
Query: 718 agaagccaaatccttcttcaagcaaaatgagaaagaaaaaccacaggctaatgtcccttc 777
||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 90033491 agaagccaaatcctttttcaagcaaaatgagaaagaaaaaccacaggctattgtctcttc 90033550
Query: 778 agctctgccatcacttgctgccggctcagggttaaaaagatcaggtggcatgagcagcct 837
||||||| |||| || ||| ||| |||||| ||||| ||||||||||||||||||
Sbjct: 90033551 agctctgtggtcacctgtgaccgagtcacggttaagaagatgaggtggcatgagcagcct 90033610
Query: 838 tttggggaaaattggagccaagaagcagaagatgagcaccttggagaagtccaagctgga 897
|| ||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 90033611 ttggggtaaaattggagccaagaagcaaaagatgagca------------ccaagctgga 90033658
Query: 898 ctgggagagcttcaaggaggaagagggcattggtgaagaactagccatccacaatcgagg 957
||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 90033659 ctgggagcatttcaaggaggaagagggcatgggtgaagaactagctgtccacaatcgagg 90033718
Query: 958 g 958
|
Sbjct: 90033719 g 90033719
Score = 232 bits (117), Expect = 3e-58
Identities = 138/145 (95%)
Strand = Plus / Minus
Query: 803 tcagggttaaaaagatcaggtggcatgagcagccttttggggaaaattggagccaagaag 862
|||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 160475927 tcagggttccaaagatcaggtggcataagcagccttttggggaaaattggagctaagaag 160475868
Query: 863 cagaagatgagcaccttggagaagtccaagctggactgggagagcttcaaggaggaagag 922
||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 160475867 cagaagatgagtaccctggagaagtccaagctggactgggaaagcttcaaggaggaagag 160475808
Query: 923 ggcattggtgaagaactagccatcc 947
|||||||||||||||||||||||||
Sbjct: 160475807 ggcattggtgaagaactagccatcc 160475783
Score = 224 bits (113), Expect = 7e-56
Identities = 137/145 (94%)
Strand = Plus / Plus
Query: 803 tcagggttaaaaagatcaggtggcatgagcagccttttggggaaaattggagccaagaag 862
|||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 160405550 tcagggttccaaagatcaggtggcataagcagccttttggggaaaattggagctaagaag 160405609
Query: 863 cagaagatgagcaccttggagaagtccaagctggactgggagagcttcaaggaggaagag 922
||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 160405610 cagaagatgagtaccctggagaactccaagctggactgggaaagcttcaaggaggaagag 160405669
Query: 923 ggcattggtgaagaactagccatcc 947
|||||||||||||||||||||||||
Sbjct: 160405670 ggcattggtgaagaactagccatcc 160405694
>Sscrofa_Chr06
|| Length = 157765593
Score = 432 bits (218), Expect = e-118
Identities = 221/222 (99%)
Strand = Plus / Plus
Query: 338 aggaagagaaaacaaggtggcctctcatttgaagaagaggaagaggaaaatgccaacgag 397
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12078817 aggaagagaaaacaaggtggcctctcatttgaagaagaggaagaggaaaatgccaatgag 12078876
Query: 398 gaatctggaggaagtagcagtgaggaggaagattcagctgcagagcaggaaaaaggcatt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12078877 gaatctggaggaagtagcagtgaggaggaagattcagctgcagagcaggaaaaaggcatt 12078936
Query: 458 gggtcagaggatgcaaggaaaaagaaggaggatgagctgtgggctagtttcctcaacgat 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12078937 gggtcagaggatgcaaggaaaaagaaggaggatgagctgtgggctagtttcctcaacgat 12078996
Query: 518 gtaggaccaaaatccaaagtgcctccaagtacacatgttaaa 559
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12078997 gtaggaccaaaatccaaagtgcctccaagtacacatgttaaa 12079038
Score = 307 bits (155), Expect = 6e-81
Identities = 161/163 (98%)
Strand = Plus / Plus
Query: 807 ggttaaaaagatcaggtggcatgagcagccttttggggaaaattggagccaagaagcaga 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12175572 ggttaaaaagatcaggtggcatgagcagccttttggggaaaattggagccaagaagcaga 12175631
Query: 867 agatgagcaccttggagaagtccaagctggactgggagagcttcaaggaggaagagggca 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12175632 agatgagcaccttggagaagtccaagctggactgggagagcttcaaggaggaagagggca 12175691
Query: 927 ttggtgaagaactagccatccacaatcgaggggaagaggggta 969
|||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 12175692 ttggtgaagaactagccatccacaatcgagggaaggaggggta 12175734
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 560 aaaggagaggagactgaagagacaagttcaagtaagttgttggtcaaagcagaagatctg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12079630 aaaggagaggagactgaagagacaagttcaagtaagttgttggtcaaagcagaagatctg 12079689
Query: 620 gagaaacctaaagaaacagaaaaagttaaaattaccaaggtgtttgattttgccggtgaa 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12079690 gagaaacctaaagaaacagaaaaagttaaaattaccaaggtgtttgattttgccggtgaa 12079749
Query: 680 gaagtcagg 688
|||||||||
Sbjct: 12079750 gaagtcagg 12079758
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 685 cagggtgactaaggaagtggatgctacatctaaagaagccaaatccttcttcaagcaaaa 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12095025 cagggtgactaaggaagtggatgctacatctaaagaagccaaatccttcttcaagcaaaa 12095084
Query: 745 tgagaaagaaaaaccacaggctaatgtcccttcagctctgccatcacttgctgccggctc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12095085 tgagaaagaaaaaccacaggctaatgtcccttcagctctgccatcacttgctgccggctc 12095144
Query: 805 agggt 809
|||||
Sbjct: 12095145 agggt 12095149
Score = 196 bits (99), Expect = 2e-47
Identities = 113/120 (94%)
Strand = Plus / Plus
Query: 221 ggtggagagtatagtgaagatgatgtaagtgaactagtgaaggaagatgaagtggatggt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12077067 ggtggagagtatagtgaagatgatgtaagtgaactagtgaaggaagatgaagtggatggt 12077126
Query: 281 gacgagcagacacagaaaaccaaagggnnnnnnngaaaggctcagagcattccggccagg 340
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 12077127 gacgagcagacacagaaaaccaaagggaaaaaaagaaaggctcagagcattccggccagg 12077186
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,218,256
Number of extensions: 523
Number of successful extensions: 523
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 11
Length of query: 994
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 973
Effective length of database: 2,808,413,156
Effective search space: 2732586000788
Effective search space used: 2732586000788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)