Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007778
(1057 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029212.1| proteasome subunit beta type-10 precursor [B... 487 e-138
Alignment gi|NP_001033616.1| proteasome subunit beta type-7 precursor [Bo... 325 5e-89
Alignment gi|NP_001029541.1| proteasome subunit beta type-6 precursor [Bo... 99 8e-21
Alignment gi|NP_001029560.1| proteasome subunit beta type-9 precursor [Bo... 95 1e-19
Alignment gi|NP_001032701.1| proteasome subunit beta type-5 precursor [Bo... 79 7e-15
Alignment gi|NP_001035570.1| proteasome subunit beta type-8 precursor [Bo... 77 3e-14
Alignment gi|NP_001092856.1| proteasome subunit beta type-11 [Bos taurus]. 72 6e-13
Alignment gi|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus]. 69 9e-12
Alignment gi|NP_001029405.1| proteasome subunit alpha type-7 [Bos taurus]. 61 1e-09
Alignment gi|NP_001029553.1| proteasome subunit alpha type-4 [Bos taurus]. 53 5e-07
>ref|NP_001029212.1| proteasome subunit beta type-10 precursor [Bos taurus].
Length = 273
Score = 487 bits (1253), Expect = e-138
Identities = 247/273 (90%), Positives = 256/273 (93%)
Frame = +3
Query: 147 MQKIALEPLGGFSFENCQRNASLERALPGFRVPHALKTGTTIAGLVFQDGVILGADTRAT 326
MQK LEP GFSFENC+RNA+L+RALPG RVPHA KTGTTIAGLVFQDGVILGADTRAT
Sbjct: 1 MQKTVLEPQRGFSFENCERNAALQRALPGLRVPHARKTGTTIAGLVFQDGVILGADTRAT 60
Query: 327 NDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTR 506
NDSVVADK CEKIHFIAPKIYCCGAGVAADAEMTTRMAASN+ELHALSTGRE RVATVTR
Sbjct: 61 NDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTR 120
Query: 507 MLRQKLFRYQGHVGASLIVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDR 686
MLRQ LFRYQG+VGASLIVGG+DFTGPQLYSVHPHGSYSRLPFTALGSGQDAA+AVLEDR
Sbjct: 121 MLRQTLFRYQGYVGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDR 180
Query: 687 FQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDACVIMGTGAKLLRTLSSPTKPTERSSQ 866
FQPNMTLEAAQ LLVEAITAGIL DLGSGGNVDACVI GAK+LR LSSPTKP ERSSQ
Sbjct: 181 FQPNMTLEAAQELLVEAITAGILGDLGSGGNVDACVITAAGAKMLRALSSPTKPIERSSQ 240
Query: 867 YRFAPGTTAVLSQTVMPLTLELVEETVQAMDVE 965
YRFAPGTT VLSQTV+PLTLELVEETVQAMDVE
Sbjct: 241 YRFAPGTTPVLSQTVVPLTLELVEETVQAMDVE 273
>ref|NP_001033616.1| proteasome subunit beta type-7 precursor [Bos taurus].
Length = 277
Score = 325 bits (832), Expect = 5e-89
Identities = 157/266 (59%), Positives = 203/266 (76%), Gaps = 2/266 (0%)
Frame = +3
Query: 168 PLGGFSFENCQRNASLER--ALPGFRVPHALKTGTTIAGLVFQDGVILGADTRATNDSVV 341
P+GGFSF+NC+RNA LE A G+++P A KTGTTIAG+V++DG++LGADTRAT VV
Sbjct: 10 PVGGFSFDNCRRNAVLEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVV 69
Query: 342 ADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQK 521
ADK+C KIHFI+P IYCCGAG AAD +MTT++ +SN+ELH+LSTGR PRV T RML+Q
Sbjct: 70 ADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQM 129
Query: 522 LFRYQGHVGASLIVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNM 701
LFRYQG++GA+L++GG+D TGP LYS++PHGS +LP+ +GSG AA+AV ED+F+P+M
Sbjct: 130 LFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDM 189
Query: 702 TLEAAQGLLVEAITAGILSDLGSGGNVDACVIMGTGAKLLRTLSSPTKPTERSSQYRFAP 881
E A+ L+ EAI AGI +DLGSG N+D CVI + LR S P K R +YR
Sbjct: 190 EEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCEK 249
Query: 882 GTTAVLSQTVMPLTLELVEETVQAMD 959
GT AVL++ V L +E++EETVQ MD
Sbjct: 250 GTNAVLTEKVTTLEIEVLEETVQTMD 275
>ref|NP_001029541.1| proteasome subunit beta type-6 precursor [Bos taurus].
Length = 239
Score = 98.6 bits (244), Expect = 8e-21
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 1/189 (0%)
Frame = +3
Query: 252 LKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTT 431
+ TGTTI + F GV+LGAD+R T S +A++ +K+ I +I+CC +G AAD +
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 432 RMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVGGID-FTGPQLYSVHP 608
+ H++ P V T + ++ +RY+ + A +I+ G D G Q+YSV
Sbjct: 91 DAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 150
Query: 609 HGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDA 788
G R PF GSG ++ ++ MT E A+ + D SGG +
Sbjct: 151 GGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 210
Query: 789 CVIMGTGAK 815
I G +
Sbjct: 211 AAIAEPGVE 219
>ref|NP_001029560.1| proteasome subunit beta type-9 precursor [Bos taurus].
Length = 219
Score = 94.7 bits (234), Expect = 1e-19
Identities = 62/202 (30%), Positives = 95/202 (47%), Gaps = 3/202 (1%)
Frame = +3
Query: 213 LERALPGFRVPHA--LKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKI 386
L P +P A + TGTTI + F GV++G+D+R + V ++ +K+ + I
Sbjct: 2 LRTGAPNGDLPRAGEVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHI 61
Query: 387 YCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVG 566
YC +G AADA+ MAA +ELH + P V ++R ++Y+ + A L+V
Sbjct: 62 YCALSGSAADAQAIADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVA 121
Query: 567 GID-FTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAIT 743
G D G Q+Y G R PF GSG ++ ++P M+ E + AI
Sbjct: 122 GWDQREGGQVYGT-MSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIA 180
Query: 744 AGILSDLGSGGNVDACVIMGTG 809
+ D SGG + I G G
Sbjct: 181 LAMKRDGSSGGVIYLATITGAG 202
>ref|NP_001032701.1| proteasome subunit beta type-5 precursor [Bos taurus].
Length = 263
Score = 79.0 bits (193), Expect = 7e-15
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
Frame = +3
Query: 213 LERALPGFRVPHALKT----GTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAP 380
L A P + VP + GTT F+ GVI+ AD+RAT + +A ++ +K+ I P
Sbjct: 39 LSLAAPSWGVPEEPRIEILHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINP 98
Query: 381 KIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASL- 557
+ AG AAD R+ A ++ L VA +++L +++Y+G +G S+
Sbjct: 99 YLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG-MGLSMG 157
Query: 558 -IVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVE 734
++ G D GP LY V G+ ++GSG A V++ + ++ +E A L
Sbjct: 158 TMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEEAYDLARR 217
Query: 735 AITAGILSDLGSGGNV 782
AI D SGG+V
Sbjct: 218 AIYQATYRDAYSGGSV 233
>ref|NP_001035570.1| proteasome subunit beta type-8 precursor [Bos taurus].
Length = 276
Score = 76.6 bits (187), Expect = 3e-14
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 2/177 (1%)
Frame = +3
Query: 261 GTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMA 440
GTT FQ GVI+ D+RA+ + + K+ I P + +G AAD + R+
Sbjct: 72 GTTTLAFKFQHGVIVAVDSRASAGNYIDTLKVNKVIEINPYLLGTMSGCAADCQYWERLL 131
Query: 441 ASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASL--IVGGIDFTGPQLYSVHPHG 614
A L+ L G V+ +++L + +Y+G +G S+ ++ G D GP LY V+ G
Sbjct: 132 AKECRLYYLRNGERISVSAASKLLSNMMCQYRG-MGLSMGSMICGWDKKGPGLYYVNDSG 190
Query: 615 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVD 785
+ + GSG A V++ ++P++++E A L AI D SGG V+
Sbjct: 191 TRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 247
>ref|NP_001092856.1| proteasome subunit beta type-11 [Bos taurus].
Length = 289
Score = 72.4 bits (176), Expect = 6e-13
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 1/187 (0%)
Frame = +3
Query: 252 LKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTT 431
L GTT F+ GVI ADTR++ + V + K+ + + +G +AD
Sbjct: 46 LAHGTTTLAFRFRHGVIAAADTRSSCGNYVECPASRKVIPVHQHLLGTTSGTSADCVTWY 105
Query: 432 RMAASNIELHALSTGREPRVATVTRMLRQKLFRYQG-HVGASLIVGGIDFTGPQLYSVHP 608
R+ + L AL G+ P VA ++L + RY+G + + + G D +GP L+ V+
Sbjct: 106 RVLQRELRLRALREGQLPSVAGAAKLLSVMMSRYRGLDLCVATALCGWDRSGPALFYVYS 165
Query: 609 HGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDA 788
G+ + ++GSG A VL+ ++ +M+ + A L A+ D SGG+VD
Sbjct: 166 DGTCLQGNIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATRRDAYSGGSVDL 225
Query: 789 CVIMGTG 809
+ +G
Sbjct: 226 FHVRESG 232
>ref|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus].
Length = 241
Score = 68.6 bits (166), Expect = 9e-12
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Frame = +3
Query: 249 ALKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMT 428
A+K G+T G+ +GV L + R T+ ++ S EKI I I C +G+ ADA+
Sbjct: 30 AIKLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTL 88
Query: 429 TRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGH----------VGASLIVGGIDF 578
A + H + V +VT+ + ++ G +L+ GG+D
Sbjct: 89 IDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE 148
Query: 579 TGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAA 716
GPQL+ + P G++ + A+GS + A + L++ + +MTL+ A
Sbjct: 149 KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194
>ref|NP_001029405.1| proteasome subunit alpha type-7 [Bos taurus].
Length = 248
Score = 61.2 bits (147), Expect = 1e-09
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 9/192 (4%)
Frame = +3
Query: 249 ALKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMT 428
A+K G+T G+ +D V+LG + ++ + +++ KI + + AG+ ADA +
Sbjct: 25 AVKKGSTAVGVRGKDIVVLGVEKKSVA-KLQDERTVRKICALDDNVCMAFAGLTADARIV 83
Query: 429 TRMAASNIELHALSTGREPRVATVTRM---LRQKLFRYQGH--VGASLIVGGIDFTG-PQ 590
A + H L+ V +TR L+Q+ + G G S ++ G DF G P+
Sbjct: 84 INRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPR 143
Query: 591 LYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQ--GLLVEAITAGILSDL 764
LY P G+Y A+G G + LE N T EA + L ++ + +L +
Sbjct: 144 LYQTDPSGTYHAWKANAIGRGAKSVREFLE----KNYTDEAIETDDLTIKLVIKALLEVV 199
Query: 765 GSGG-NVDACVI 797
SGG N++ V+
Sbjct: 200 QSGGKNIELAVM 211
>ref|NP_001029553.1| proteasome subunit alpha type-4 [Bos taurus].
Length = 261
Score = 52.8 bits (125), Expect = 5e-07
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Frame = +3
Query: 267 TIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTT---RM 437
T G++ DGV+L A+ R + + EKI+ + + C AG+ +DA + T R+
Sbjct: 33 TCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRL 92
Query: 438 AASNIELHALSTGREPRVATVTRMLRQKLFRYQGH--VGASLIVGGID-FTGPQLYSVHP 608
A L ++ T ++Q ++ G G SL+ G D G QLY P
Sbjct: 93 IAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDP 152
Query: 609 HGSYSRLPFTALGSGQDAALAVL-EDRFQPNMTLEAAQGLLVEAI 740
G+Y T +G+ AA+++L +D + MTL++A L ++ +
Sbjct: 153 SGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVL 197
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,690,303
Number of extensions: 1542247
Number of successful extensions: 6951
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6902
Number of HSP's successfully gapped: 14
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007778
(1057 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546869.2| PREDICTED: similar to proteasome beta 10 subuni... 484 e-137
Alignment gi|XP_849241.1| PREDICTED: similar to Proteasome subunit beta t... 97 3e-20
Alignment gi|NP_001041551.1| proteasome subunit beta type-9 [Canis lupus ... 93 4e-19
Alignment gi|NP_001041550.1| proteasome subunit beta type-8 precursor [Ca... 82 9e-16
Alignment gi|XP_537370.2| PREDICTED: similar to proteasome beta 5 subunit... 80 4e-15
Alignment gi|XP_547726.1| PREDICTED: similar to proteasome beta 5 subunit... 75 1e-13
Alignment gi|XP_547244.2| PREDICTED: similar to Proteasome subunit alpha ... 69 1e-11
Alignment gi|XP_547630.2| PREDICTED: similar to proteasome (prosome, macr... 54 2e-07
Alignment gi|XP_866085.1| PREDICTED: similar to Proteasome subunit alpha ... 54 2e-07
Alignment gi|XP_534472.2| PREDICTED: similar to Proteasome subunit alpha ... 54 3e-07
>ref|XP_546869.2| PREDICTED: similar to proteasome beta 10 subunit proprotein [Canis
familiaris].
Length = 305
Score = 484 bits (1245), Expect = e-137
Identities = 249/299 (83%), Positives = 267/299 (89%), Gaps = 6/299 (2%)
Frame = +3
Query: 87 LGAGPTPLTSI-PLDCPAHLDMQKIALEPLGGFSFENCQRNASLERALPGFRVPHALKTG 263
+G+ PL PLD PAHL+M K+A EP GFSFENCQRNASLER LPGFR+P A KTG
Sbjct: 7 MGSPTAPLLDPQPLDHPAHLEMLKLASEPQRGFSFENCQRNASLERVLPGFRIPRAHKTG 66
Query: 264 TTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPK-----IYCCGAGVAADAEMT 428
TTIAGLVF+DGVILGADTRATNDSVV DK+CEKIHFIAP + CCGAGVAADAEMT
Sbjct: 67 TTIAGLVFRDGVILGADTRATNDSVVMDKNCEKIHFIAPNEPPLVLSCCGAGVAADAEMT 126
Query: 429 TRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVGGIDFTGPQLYSVHP 608
TRMAASN+ELH+LSTGREPRV TVTR+LRQ LFRY+GHVGASL+VGG+DF+GPQLYSVHP
Sbjct: 127 TRMAASNMELHSLSTGREPRVTTVTRLLRQTLFRYRGHVGASLLVGGVDFSGPQLYSVHP 186
Query: 609 HGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDA 788
HGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQ LLVEAITAGIL DLGSGG+VDA
Sbjct: 187 HGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGSVDA 246
Query: 789 CVIMGTGAKLLRTLSSPTKPTERSSQYRFAPGTTAVLSQTVMPLTLELVEETVQAMDVE 965
CVI GTGAKLLRTLSSPTKPTER SQY FAPGTTAV SQTV PLTLEL+EETVQAM+VE
Sbjct: 247 CVITGTGAKLLRTLSSPTKPTERPSQYYFAPGTTAVQSQTVKPLTLELLEETVQAMEVE 305
>ref|XP_849241.1| PREDICTED: similar to Proteasome subunit beta type 6 precursor
(Proteasome delta chain) (Macropain delta chain)
(Multicatalytic endopeptidase complex delta chain)
(Proteasome subunit Y) [Canis familiaris].
Length = 239
Score = 97.1 bits (240), Expect = 3e-20
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 1/189 (0%)
Frame = +3
Query: 252 LKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTT 431
+ TGTTI + F+ GV+LGAD+R T S +A++ +K+ I +I+CC +G AAD +
Sbjct: 31 VSTGTTIMAVQFEGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 432 RMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVGGID-FTGPQLYSVHP 608
+ H++ P V T + ++ +RY+ + A +I+ G D G Q+YSV
Sbjct: 91 DAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 150
Query: 609 HGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDA 788
G R F GSG ++ ++ MT E A+ + D SGG +
Sbjct: 151 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 210
Query: 789 CVIMGTGAK 815
I +G +
Sbjct: 211 AAIAESGVE 219
>ref|NP_001041551.1| proteasome subunit beta type-9 [Canis lupus familiaris].
Length = 209
Score = 93.2 bits (230), Expect = 4e-19
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 1/185 (0%)
Frame = +3
Query: 258 TGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRM 437
TGTTI + F GV++G+D+R + V +++ K+ + IYC +G AADA+ M
Sbjct: 9 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRAFNKLSPLHQHIYCALSGSAADAQAMADM 68
Query: 438 AASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVGGID-FTGPQLYSVHPHG 614
AA +ELH L P V ++R ++Y+ + A L++ G D G Q+Y G
Sbjct: 69 AAYQLELHGLELEEPPLVLAAANVVRNISYKYREDLSAHLMIAGWDRRDGGQVYGT-MGG 127
Query: 615 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDACV 794
+R PF GSG ++ ++P M+ E + AI + D SGG +
Sbjct: 128 MLTRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRSFTTNAIALAMNRDGSSGGVIHLVT 187
Query: 795 IMGTG 809
I G
Sbjct: 188 ITAAG 192
>ref|NP_001041550.1| proteasome subunit beta type-8 precursor [Canis lupus familiaris].
Length = 276
Score = 82.0 bits (201), Expect = 9e-16
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 1/176 (0%)
Frame = +3
Query: 261 GTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMA 440
GTT FQ GVI+ D+RAT + ++ K+ I P + +G AAD + R+
Sbjct: 72 GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLL 131
Query: 441 ASNIELHALSTGREPRVATVTRMLRQKLFRYQG-HVGASLIVGGIDFTGPQLYSVHPHGS 617
A L+ L G V+ +++L +++Y+G + ++ G D GP LY V +G+
Sbjct: 132 AKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKGPGLYYVDQNGT 191
Query: 618 YSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVD 785
+ GSG A V++ +QP+++ E A L AIT D SGG ++
Sbjct: 192 RLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDSYSGGIIN 247
>ref|XP_537370.2| PREDICTED: similar to proteasome beta 5 subunit [Canis familiaris].
Length = 263
Score = 79.7 bits (195), Expect = 4e-15
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 2/188 (1%)
Frame = +3
Query: 228 PGFRVPHALKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGV 407
PG + H GTT FQ GVI+ AD+RAT + +A ++ +K+ I P + AG
Sbjct: 52 PGIEMLH----GTTTLAFKFQHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGG 107
Query: 408 AADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASL--IVGGIDFT 581
AAD R+ A ++ L VA +++L +++Y+G +G S+ ++ G D
Sbjct: 108 AADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG-MGLSMGTMICGWDKR 166
Query: 582 GPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSD 761
GP LY V G+ ++GSG A V++ + ++ +E A L AI D
Sbjct: 167 GPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRD 226
Query: 762 LGSGGNVD 785
SGG V+
Sbjct: 227 AYSGGAVN 234
>ref|XP_547726.1| PREDICTED: similar to proteasome beta 5 subunit [Canis familiaris].
Length = 282
Score = 74.7 bits (182), Expect = 1e-13
Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 4/212 (1%)
Frame = +3
Query: 162 LEPLGGFSFE-NCQRNASLERALPGFRVPHALKTGTTIAGLVFQDGVILGADTRATNDSV 338
L P GG+S C L L G R+ H GTT F+ GVI ADTR++ +
Sbjct: 21 LPPAGGWSVPLGCDPQTFLR--LHGPRLAH----GTTTLAFRFRHGVIAAADTRSSCGNY 74
Query: 339 VADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQ 518
VA + KI + + +G +AD R+ + L AL GR P VA R+L
Sbjct: 75 VACPASRKIIPVHQHLLGTTSGTSADCAAWYRVLRRELRLRALREGRLPSVAGAARLLSA 134
Query: 519 KLFRYQG-HVGASLIVGGIDFTGPQLYSVHPHGSYSRLP--FTALGSGQDAALAVLEDRF 689
+ Y+G + + + G D +GP L+ V G +RLP ++GSG A VL+ +
Sbjct: 135 MMSCYRGLDLCVATALCGWDRSGPALFYVCSDG--TRLPGNVFSVGSGSPYAYGVLDRGY 192
Query: 690 QPNMTLEAAQGLLVEAITAGILSDLGSGGNVD 785
+ +++ + A L A+ D SGG+VD
Sbjct: 193 RYDLSPQEAYALARRAVAHATHRDAYSGGSVD 224
>ref|XP_547244.2| PREDICTED: similar to Proteasome subunit alpha type 5 (Proteasome
zeta chain) (Macropain zeta chain) (Multicatalytic
endopeptidase complex zeta chain) isoform 1 [Canis
familiaris].
Length = 241
Score = 68.6 bits (166), Expect = 1e-11
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Frame = +3
Query: 249 ALKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMT 428
A+K G+T G+ +GV L + R T+ ++ S EKI I I C +G+ ADA+
Sbjct: 30 AIKLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTL 88
Query: 429 TRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGH----------VGASLIVGGIDF 578
A + H + V +VT+ + ++ G +L+ GG+D
Sbjct: 89 IDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE 148
Query: 579 TGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAA 716
GPQL+ + P G++ + A+GS + A + L++ + +MTL+ A
Sbjct: 149 KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194
>ref|XP_547630.2| PREDICTED: similar to proteasome (prosome, macropain) subunit,
alpha type, 8 isoform 2 [Canis familiaris].
Length = 222
Score = 54.3 bits (129), Expect = 2e-07
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Frame = +3
Query: 249 ALKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMT 428
A+K G+T G+ D V+LG + ++ + +++ KI + + AG+ ADA +
Sbjct: 27 AVKKGSTAVGIRGTDIVVLGVEKKSVA-KLQDERTVRKICALDDHVCMAFAGLTADARVV 85
Query: 429 TRMAASNIELHALSTGREPRVATVTRM---LRQKLFRYQGH--VGASLIVGGIDFTG-PQ 590
A + H L+ V +TR L+QK + G G S ++ G D G P+
Sbjct: 86 INRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPR 145
Query: 591 LYSVHPHGSYSRLPFTALGSGQDAALAVLEDRF------QPNMTLEAAQGLLVEAITAGI 752
LY P G+Y A+G LE + N ++ A L+E + +G
Sbjct: 146 LYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIANDNEAIKLAIRALLEVVQSG- 204
Query: 753 LSDLGSGGNVDACVI 797
G N++ +I
Sbjct: 205 ------GKNIELAII 213
>ref|XP_866085.1| PREDICTED: similar to Proteasome subunit alpha type 5 (Proteasome
zeta chain) (Macropain zeta chain) (Multicatalytic
endopeptidase complex zeta chain) isoform 2 [Canis
familiaris].
Length = 183
Score = 54.3 bits (129), Expect = 2e-07
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Frame = +3
Query: 351 SCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQKLFR 530
S EKI I I C +G+ ADA+ A + H + V +VT+ + +
Sbjct: 5 SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQ 64
Query: 531 YQGH----------VGASLIVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLE 680
+ G +L+ GG+D GPQL+ + P G++ + A+GS + A + L+
Sbjct: 65 FGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 124
Query: 681 DRFQPNMTLEAA 716
+ + +MTL+ A
Sbjct: 125 EVYHKSMTLKEA 136
>ref|XP_534472.2| PREDICTED: similar to Proteasome subunit alpha type 7 (Proteasome
subunit RC6-1) [Canis familiaris].
Length = 434
Score = 53.5 bits (127), Expect = 3e-07
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 9/183 (4%)
Frame = +3
Query: 276 GLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIE 455
G+ +D V+LG + ++ + +++ KI + + AG+ ADA + A +
Sbjct: 220 GVRGKDIVVLGVEKKSVA-KLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQ 278
Query: 456 LHALSTGREPRVATVTRM---LRQKLFRYQGH--VGASLIVGGIDFTG-PQLYSVHPHGS 617
H L+ V +TR L+Q+ + G G S ++ G DF G P+LY P G+
Sbjct: 279 SHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGT 338
Query: 618 YSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQ--GLLVEAITAGILSDLGSGG-NVDA 788
Y A+G G + LE N T EA + L ++ + +L + SGG N++
Sbjct: 339 YHAWKANAIGRGAKSVREFLE----KNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIEL 394
Query: 789 CVI 797
V+
Sbjct: 395 AVM 397
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,411,850
Number of extensions: 1553261
Number of successful extensions: 6712
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6674
Number of HSP's successfully gapped: 11
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007778
(1057 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038030.1| proteasome subunit beta type-10 [Sus scrofa]. 536 e-153
Alignment gi|NP_001090945.1| proteasome subunit beta type-7 precursor [Su... 325 3e-89
Alignment gi|NP_001138398.1| proteasome subunit beta type-6 [Sus scrofa]. 97 2e-20
Alignment gi|XP_003128374.1| PREDICTED: proteasome subunit beta type-9-li... 91 1e-18
Alignment gi|NP_001033050.1| proteasome subunit beta type-9 [Sus scrofa]. 91 1e-18
Alignment gi|XP_001924480.2| PREDICTED: proteasome subunit beta type-5 [S... 77 2e-14
Alignment gi|NP_999100.1| proteasome subunit beta type-8 [Sus scrofa]. 76 3e-14
Alignment gi|XP_001925798.1| PREDICTED: proteasome subunit beta type-11-l... 76 3e-14
Alignment gi|XP_001924154.2| PREDICTED: proteasome subunit beta type-8 [S... 75 6e-14
Alignment gi|NP_001138373.1| proteasome subunit alpha type-5 [Sus scrofa]. 69 6e-12
>ref|NP_001038030.1| proteasome subunit beta type-10 [Sus scrofa].
Length = 273
Score = 536 bits (1382), Expect = e-153
Identities = 273/273 (100%), Positives = 273/273 (100%)
Frame = +3
Query: 147 MQKIALEPLGGFSFENCQRNASLERALPGFRVPHALKTGTTIAGLVFQDGVILGADTRAT 326
MQKIALEPLGGFSFENCQRNASLERALPGFRVPHALKTGTTIAGLVFQDGVILGADTRAT
Sbjct: 1 MQKIALEPLGGFSFENCQRNASLERALPGFRVPHALKTGTTIAGLVFQDGVILGADTRAT 60
Query: 327 NDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTR 506
NDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTR
Sbjct: 61 NDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTR 120
Query: 507 MLRQKLFRYQGHVGASLIVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDR 686
MLRQKLFRYQGHVGASLIVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDR
Sbjct: 121 MLRQKLFRYQGHVGASLIVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDR 180
Query: 687 FQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDACVIMGTGAKLLRTLSSPTKPTERSSQ 866
FQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDACVIMGTGAKLLRTLSSPTKPTERSSQ
Sbjct: 181 FQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDACVIMGTGAKLLRTLSSPTKPTERSSQ 240
Query: 867 YRFAPGTTAVLSQTVMPLTLELVEETVQAMDVE 965
YRFAPGTTAVLSQTVMPLTLELVEETVQAMDVE
Sbjct: 241 YRFAPGTTAVLSQTVMPLTLELVEETVQAMDVE 273
>ref|NP_001090945.1| proteasome subunit beta type-7 precursor [Sus scrofa].
Length = 277
Score = 325 bits (832), Expect = 3e-89
Identities = 157/266 (59%), Positives = 202/266 (75%), Gaps = 2/266 (0%)
Frame = +3
Query: 168 PLGGFSFENCQRNASLER--ALPGFRVPHALKTGTTIAGLVFQDGVILGADTRATNDSVV 341
P+GGFSF+NC+RNA LE A G+++P A KTGTTIAG+V++DG++LGADTRAT VV
Sbjct: 10 PVGGFSFDNCRRNAILEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVV 69
Query: 342 ADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQK 521
ADK+C KIHFI+P IYCCGAG AAD +MTT++ +SN+ELH+LSTGR PRV T RML+Q
Sbjct: 70 ADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQM 129
Query: 522 LFRYQGHVGASLIVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNM 701
LFRYQG++GA+L++GG+D TGP LYS++PHGS +LP+ +GSG AA+AV ED+F+P M
Sbjct: 130 LFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPEM 189
Query: 702 TLEAAQGLLVEAITAGILSDLGSGGNVDACVIMGTGAKLLRTLSSPTKPTERSSQYRFAP 881
E A+ L+ EAI AGI +DLGSG N+D CVI + R S P K R +YR
Sbjct: 190 EEEEAKQLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFFRPYSVPNKKGTRFGRYRCEK 249
Query: 882 GTTAVLSQTVMPLTLELVEETVQAMD 959
GTTAVL++ V L +E++EETVQ MD
Sbjct: 250 GTTAVLTEKVTALDIEVLEETVQTMD 275
>ref|NP_001138398.1| proteasome subunit beta type-6 [Sus scrofa].
Length = 241
Score = 96.7 bits (239), Expect = 2e-20
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 1/189 (0%)
Frame = +3
Query: 252 LKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTT 431
+ TGTTI + F GV+LGAD+R T S +A++ +K+ I +I+CC +G AAD +
Sbjct: 33 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 92
Query: 432 RMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVGGID-FTGPQLYSVHP 608
+ H++ P V T + ++ +RY+ + A +IV G D G Q+YSV
Sbjct: 93 DAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVPM 152
Query: 609 HGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDA 788
G R F GSG ++ ++ MT E A+ + D SGG +
Sbjct: 153 GGMMVRQAFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 212
Query: 789 CVIMGTGAK 815
I +G +
Sbjct: 213 AAIAESGVE 221
>ref|XP_003128374.1| PREDICTED: proteasome subunit beta type-9-like [Sus scrofa].
Length = 219
Score = 90.5 bits (223), Expect = 1e-18
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 1/185 (0%)
Frame = +3
Query: 258 TGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRM 437
TGTTI + F GV++G+D+R + V ++ +K+ + +IYC +G AADA+ M
Sbjct: 19 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHHRIYCALSGSAADAQAIADM 78
Query: 438 AASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVGGID-FTGPQLYSVHPHG 614
AA +ELH + P V ++R ++Y+ + A L+V G D G Q+Y G
Sbjct: 79 AAYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT-MGG 137
Query: 615 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDACV 794
R PF GSG ++ ++P M+ E + AI + D SGG +
Sbjct: 138 MLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVIYLVT 197
Query: 795 IMGTG 809
I G
Sbjct: 198 ITAAG 202
>ref|NP_001033050.1| proteasome subunit beta type-9 [Sus scrofa].
Length = 219
Score = 90.5 bits (223), Expect = 1e-18
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 1/185 (0%)
Frame = +3
Query: 258 TGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRM 437
TGTTI + F GV++G+D+R + V ++ +K+ + +IYC +G AADA+ M
Sbjct: 19 TGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHHRIYCALSGSAADAQAIADM 78
Query: 438 AASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVGGID-FTGPQLYSVHPHG 614
AA +ELH + P V ++R ++Y+ + A L+V G D G Q+Y G
Sbjct: 79 AAYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT-MGG 137
Query: 615 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDACV 794
R PF GSG ++ ++P M+ E + AI + D SGG +
Sbjct: 138 MLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVIYLVT 197
Query: 795 IMGTG 809
I G
Sbjct: 198 ITAAG 202
>ref|XP_001924480.2| PREDICTED: proteasome subunit beta type-5 [Sus scrofa].
Length = 275
Score = 76.6 bits (187), Expect = 2e-14
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 2/177 (1%)
Frame = +3
Query: 261 GTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMA 440
GTT F GVI+ AD+RAT + +A ++ +K+ I P + AG AAD R+
Sbjct: 71 GTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 130
Query: 441 ASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASL--IVGGIDFTGPQLYSVHPHG 614
A ++ L VA +++L +++Y+G +G S+ ++ G D GP LY V G
Sbjct: 131 ARQCRIYELRNKERISVAAASKLLANMVYQYKG-MGLSMGTMICGWDKRGPGLYYVDSEG 189
Query: 615 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVD 785
+ ++GSG A V++ + ++ +E A L AI D SGG+V+
Sbjct: 190 NRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGSVN 246
>ref|NP_999100.1| proteasome subunit beta type-8 [Sus scrofa].
Length = 260
Score = 76.3 bits (186), Expect = 3e-14
Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 2/210 (0%)
Frame = +3
Query: 162 LEPLGGFSFENCQRNASLERALPGFRVPHALKTGTTIAGLVFQDGVILGADTRATNDSVV 341
L LGG + +RN +E A GTT FQ GVI+ D+RA+ S +
Sbjct: 38 LRSLGG----DGERNVQIEMA-----------HGTTTLAFKFQHGVIVAVDSRASAGSYI 82
Query: 342 ADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQK 521
A K+ I P + +G AAD + R+ A L+ L G V+ +++L
Sbjct: 83 ATLRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNM 142
Query: 522 LFRYQGHVGASL--IVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQP 695
+++Y+G +G S+ ++ G D GP LY V +G+ + GSG A V++ +
Sbjct: 143 MYQYRG-MGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRY 201
Query: 696 NMTLEAAQGLLVEAITAGILSDLGSGGNVD 785
++++E A L AI D SGG V+
Sbjct: 202 DLSIEEAYDLGRRAIVHATHRDSYSGGVVN 231
>ref|XP_001925798.1| PREDICTED: proteasome subunit beta type-11-like [Sus scrofa].
Length = 291
Score = 76.3 bits (186), Expect = 3e-14
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 1/187 (0%)
Frame = +3
Query: 252 LKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTT 431
L GTT F+DGVI ADTR++ + V + K+ + + +G +AD
Sbjct: 46 LAHGTTTLAFRFRDGVIAAADTRSSCGNYVECPASRKVIPVHQHLLGTTSGTSADCTTWY 105
Query: 432 RMAASNIELHALSTGREPRVATVTRMLRQKLFRYQG-HVGASLIVGGIDFTGPQLYSVHP 608
R+ + L L G+ P VA ++L + RY+G + + + G D +GP L+ V+
Sbjct: 106 RVLRRELRLRELREGQLPSVAGAAKLLSGMMSRYRGLDLCVATALCGWDRSGPALFYVYS 165
Query: 609 HGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDA 788
G+ + ++GSG A VL+ ++ +M+ + A L A+ D SGG+VD
Sbjct: 166 DGTLLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALACRAVAHATHRDAYSGGSVDL 225
Query: 789 CVIMGTG 809
+ +G
Sbjct: 226 FHVRESG 232
>ref|XP_001924154.2| PREDICTED: proteasome subunit beta type-8 [Sus scrofa].
Length = 276
Score = 75.1 bits (183), Expect = 6e-14
Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 2/210 (0%)
Frame = +3
Query: 162 LEPLGGFSFENCQRNASLERALPGFRVPHALKTGTTIAGLVFQDGVILGADTRATNDSVV 341
L LGG + +RN +E A GTT FQ GVI+ D+RA+ S +
Sbjct: 54 LRSLGG----DGERNVQIEMA-----------HGTTTLAFKFQHGVIVAVDSRASAGSYI 98
Query: 342 ADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQK 521
A K+ I P + +G AAD + R+ A L+ L G V+ +++L
Sbjct: 99 ATLRVNKVIEINPYLLGTMSGSAADCQYWERLLAKECRLYYLRNGDRISVSAASKLLSNM 158
Query: 522 LFRYQGHVGASL--IVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQP 695
+++Y+G +G S+ ++ G D GP LY V +G+ + GSG A V++ +
Sbjct: 159 MYQYRG-MGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRY 217
Query: 696 NMTLEAAQGLLVEAITAGILSDLGSGGNVD 785
++++E A L AI D SGG V+
Sbjct: 218 DLSIEEAYDLGRRAIVHATHRDSYSGGVVN 247
>ref|NP_001138373.1| proteasome subunit alpha type-5 [Sus scrofa].
Length = 241
Score = 68.6 bits (166), Expect = 6e-12
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Frame = +3
Query: 249 ALKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMT 428
A+K G+T G+ +GV L + R T+ ++ S EKI I I C +G+ ADA+
Sbjct: 30 AIKLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTL 88
Query: 429 TRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGH----------VGASLIVGGIDF 578
A + H + V +VT+ + ++ G +L+ GG+D
Sbjct: 89 IDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE 148
Query: 579 TGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAA 716
GPQL+ + P G++ + A+GS + A + L++ + +MTL+ A
Sbjct: 149 KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,064,291
Number of extensions: 1032966
Number of successful extensions: 4333
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4305
Number of HSP's successfully gapped: 17
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007778
(1057 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038668.2| proteasome subunit beta type-10 precursor [Mus ... 461 e-130
Alignment gi|NP_035317.1| proteasome subunit beta type-7 precursor [Mus m... 330 9e-91
Alignment gi|NP_038613.1| proteasome subunit beta type-9 [Mus musculus]. 95 1e-19
Alignment gi|NP_032972.3| proteasome subunit beta type-6 precursor [Mus m... 94 1e-19
Alignment gi|NP_035316.1| proteasome subunit beta type-5 [Mus musculus]. 77 2e-14
Alignment gi|NP_034854.2| proteasome subunit beta type-8 precursor [Mus m... 76 5e-14
Alignment gi|NP_780413.1| proteasome subunit beta type-11 precursor [Mus ... 75 9e-14
Alignment gi|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-l... 69 8e-12
Alignment gi|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus]. 69 8e-12
Alignment gi|NP_036099.1| proteasome subunit alpha type-7 [Mus musculus]. 60 2e-09
>ref|NP_038668.2| proteasome subunit beta type-10 precursor [Mus musculus].
Length = 273
Score = 461 bits (1187), Expect = e-130
Identities = 231/273 (84%), Positives = 248/273 (90%)
Frame = +3
Query: 147 MQKIALEPLGGFSFENCQRNASLERALPGFRVPHALKTGTTIAGLVFQDGVILGADTRAT 326
M K A+EP GGFSFENCQRNASLE LPG RVPHA KTGTTIAGLVF+DGVILGADTRAT
Sbjct: 1 MLKQAVEPTGGFSFENCQRNASLEHVLPGLRVPHARKTGTTIAGLVFRDGVILGADTRAT 60
Query: 327 NDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTR 506
NDSVVADKSCEKIHFIAPKIYCCGAGVAAD EMTTRMAAS +ELHALSTGREPRVATVTR
Sbjct: 61 NDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTR 120
Query: 507 MLRQKLFRYQGHVGASLIVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDR 686
+LRQ LFRYQGHVGASL+VGG+D GPQLY VHPHGSYSRLPFTALGSGQ AA+A+LEDR
Sbjct: 121 ILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDR 180
Query: 687 FQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDACVIMGTGAKLLRTLSSPTKPTERSSQ 866
FQPNMTLEAAQ LLVEAITAGILSDLGSGGNVDACVI GAKL R LS+PT+P +R+ +
Sbjct: 181 FQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPVQRAGR 240
Query: 867 YRFAPGTTAVLSQTVMPLTLELVEETVQAMDVE 965
YRFAPGTT VL++ V PLTLEL+EETVQAM+VE
Sbjct: 241 YRFAPGTTPVLTREVRPLTLELLEETVQAMEVE 273
>ref|NP_035317.1| proteasome subunit beta type-7 precursor [Mus musculus].
Length = 277
Score = 330 bits (847), Expect = 9e-91
Identities = 159/266 (59%), Positives = 205/266 (77%), Gaps = 2/266 (0%)
Frame = +3
Query: 168 PLGGFSFENCQRNASLER--ALPGFRVPHALKTGTTIAGLVFQDGVILGADTRATNDSVV 341
P+GGFSF+NC+RNA LE A GF++P A KTGTTIAG+V++DG++LGADTRAT VV
Sbjct: 10 PVGGFSFDNCRRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVV 69
Query: 342 ADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQK 521
ADK+C KIHFI+P IYCCGAG AAD +MTT++ +SN+ELH+L+TGR PRV T RML+Q
Sbjct: 70 ADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQM 129
Query: 522 LFRYQGHVGASLIVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNM 701
LFRYQG++GA+L++GG+D TGP LYS++PHGS +LP+ +GSG AA+AV ED+F+P+M
Sbjct: 130 LFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDM 189
Query: 702 TLEAAQGLLVEAITAGILSDLGSGGNVDACVIMGTGAKLLRTLSSPTKPTERSSQYRFAP 881
E A+ L+ EAI AGI +DLGSG N+D CVI + LR S P K R +YR
Sbjct: 190 EEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPFSVPNKKGTRLGRYRCEK 249
Query: 882 GTTAVLSQTVMPLTLELVEETVQAMD 959
GTTAVL++ V PL +E++EETVQ MD
Sbjct: 250 GTTAVLTEKVTPLEIEVLEETVQTMD 275
>ref|NP_038613.1| proteasome subunit beta type-9 [Mus musculus].
Length = 219
Score = 94.7 bits (234), Expect = 1e-19
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 1/185 (0%)
Frame = +3
Query: 258 TGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRM 437
TGTTI + F GV++G+D+R + + V ++ +K+ + I+C +G AADA+ M
Sbjct: 19 TGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQHIFCALSGSAADAQAIADM 78
Query: 438 AASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVGGID-FTGPQLYSVHPHG 614
AA +ELH L P V +++ ++Y+ + A LIV G D G Q+Y G
Sbjct: 79 AAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQCEGGQVYGT-MGG 137
Query: 615 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDACV 794
R PFT GSG ++ ++P MT E + +AIT + D SGG +
Sbjct: 138 MLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIYLVT 197
Query: 795 IMGTG 809
I G
Sbjct: 198 ITAAG 202
>ref|NP_032972.3| proteasome subunit beta type-6 precursor [Mus musculus].
Length = 238
Score = 94.4 bits (233), Expect = 1e-19
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 1/189 (0%)
Frame = +3
Query: 252 LKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTT 431
+ TGTTI + F GV+LGAD+R T S +A++ +K+ I I+CC +G AAD +
Sbjct: 30 VSTGTTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVA 89
Query: 432 RMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVGGID-FTGPQLYSVHP 608
+ H++ P V T + ++ +RY+ + A +I+ G D G Q+YSV
Sbjct: 90 DAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 149
Query: 609 HGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDA 788
G R F GSG ++ ++ MT + A+ + D SGG +
Sbjct: 150 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRL 209
Query: 789 CVIMGTGAK 815
I +G +
Sbjct: 210 AAIQESGVE 218
>ref|NP_035316.1| proteasome subunit beta type-5 [Mus musculus].
Length = 264
Score = 77.0 bits (188), Expect = 2e-14
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 6/197 (3%)
Frame = +3
Query: 213 LERALPGFRVPHALKT----GTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAP 380
L A P + VP + GTT F GVI+ AD+RAT + +A ++ +K+ I P
Sbjct: 39 LSLAAPSWGVPEEPRIEMLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINP 98
Query: 381 KIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASL- 557
+ AG AAD R+ A ++ L VA +++L +++Y+G +G S+
Sbjct: 99 YLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG-MGLSMG 157
Query: 558 -IVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVE 734
++ G D GP LY V G+ ++GSG A V++ + ++ +E A L
Sbjct: 158 TMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARR 217
Query: 735 AITAGILSDLGSGGNVD 785
AI D SGG V+
Sbjct: 218 AIYQATYRDAYSGGAVN 234
>ref|NP_034854.2| proteasome subunit beta type-8 precursor [Mus musculus].
Length = 276
Score = 75.9 bits (185), Expect = 5e-14
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 2/177 (1%)
Frame = +3
Query: 261 GTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMA 440
GTT FQ GVI+ D+RAT S ++ K+ I P + +G AAD + R+
Sbjct: 72 GTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLL 131
Query: 441 ASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASL--IVGGIDFTGPQLYSVHPHG 614
A L+ L G V+ +++L + +Y+G +G S+ ++ G D GP LY V +G
Sbjct: 132 AKECRLYYLRNGERISVSAASKLLSNMMLQYRG-MGLSMGSMICGWDKKGPGLYYVDDNG 190
Query: 615 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVD 785
+ + GSG A V++ ++ +++ E A L AI D SGG V+
Sbjct: 191 TRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVN 247
>ref|NP_780413.1| proteasome subunit beta type-11 precursor [Mus musculus].
Length = 302
Score = 75.1 bits (183), Expect = 9e-14
Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 2/220 (0%)
Frame = +3
Query: 156 IALEPLGGFSF-ENCQRNASLERALPGFRVPHALKTGTTIAGLVFQDGVILGADTRATND 332
I L GG++ C L+ + G R+ H GTT F+ GVI ADTR++
Sbjct: 19 IHLPQAGGWAVPRGCDPQTFLQ--IHGPRLAH----GTTTLAFRFRHGVIAAADTRSSCG 72
Query: 333 SVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRML 512
S VA + K+ + ++ +G +AD R+ + L L G+ P VA ++L
Sbjct: 73 SYVACPASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLL 132
Query: 513 RQKLFRYQG-HVGASLIVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRF 689
+ Y+G + + + G D +GP L+ V+ G+ + ++GSG A VL+ +
Sbjct: 133 AAMMSCYRGLDLCVATALCGWDHSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGY 192
Query: 690 QPNMTLEAAQGLLVEAITAGILSDLGSGGNVDACVIMGTG 809
+MT++ A L A+ D SGG+VD + +G
Sbjct: 193 HYDMTIQEAYTLARCAVAHATHRDAYSGGSVDLFHVRESG 232
>ref|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-like [Mus musculus].
Length = 241
Score = 68.6 bits (166), Expect = 8e-12
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Frame = +3
Query: 249 ALKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMT 428
A+K G+T G+ +GV L + R T+ ++ S EKI I I C +G+ ADA+
Sbjct: 30 AIKLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTL 88
Query: 429 TRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGH----------VGASLIVGGIDF 578
A + H + V +VT+ + ++ G +L+ GG+D
Sbjct: 89 IDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE 148
Query: 579 TGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAA 716
GPQL+ + P G++ + A+GS + A + L++ + +MTL+ A
Sbjct: 149 KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194
>ref|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus].
Length = 241
Score = 68.6 bits (166), Expect = 8e-12
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Frame = +3
Query: 249 ALKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMT 428
A+K G+T G+ +GV L + R T+ ++ S EKI I I C +G+ ADA+
Sbjct: 30 AIKLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTL 88
Query: 429 TRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGH----------VGASLIVGGIDF 578
A + H + V +VT+ + ++ G +L+ GG+D
Sbjct: 89 IDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE 148
Query: 579 TGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAA 716
GPQL+ + P G++ + A+GS + A + L++ + +MTL+ A
Sbjct: 149 KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194
>ref|NP_036099.1| proteasome subunit alpha type-7 [Mus musculus].
Length = 248
Score = 60.5 bits (145), Expect = 2e-09
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 7/190 (3%)
Frame = +3
Query: 249 ALKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMT 428
A+K G+T G+ +D V+LG + ++ + +++ KI + + AG+ ADA +
Sbjct: 25 AVKKGSTAVGVRGKDIVVLGVEKKSVA-KLQDERTVRKICALDDNVCMAFAGLTADARIV 83
Query: 429 TRMAASNIELHALSTGREPRVATVTRM---LRQKLFRYQGH--VGASLIVGGIDFTG-PQ 590
A + H L+ V +TR L+Q+ + G G S ++ G DF G P+
Sbjct: 84 INRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPR 143
Query: 591 LYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGS 770
LY P G+Y A+G G + LE + + L ++ + +L + S
Sbjct: 144 LYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAI--ETDDLTIKLVIKALLEVVQS 201
Query: 771 GG-NVDACVI 797
GG N++ V+
Sbjct: 202 GGKNIELAVM 211
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,791,570
Number of extensions: 1248771
Number of successful extensions: 5258
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 5233
Number of HSP's successfully gapped: 14
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007778
(1057 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002792.1| proteasome subunit beta type-10 precursor [Homo... 484 e-137
Alignment gi|NP_002790.1| proteasome subunit beta type-7 proprotein [Homo... 327 1e-89
Alignment gi|NP_002789.1| proteasome subunit beta type-6 precursor [Homo ... 96 4e-20
Alignment gi|NP_002791.1| proteasome subunit beta type-9 proprotein [Homo... 94 2e-19
Alignment gi|NP_004150.1| proteasome subunit beta type-8 isoform E1 propr... 82 1e-15
Alignment gi|NP_002788.1| proteasome subunit beta type-5 isoform 1 [Homo ... 80 2e-15
Alignment gi|NP_683720.2| proteasome subunit beta type-8 isoform E2 propr... 80 4e-15
Alignment gi|NP_001093250.1| proteasome subunit beta type-11 precursor [H... 74 3e-13
Alignment gi|NP_002781.2| proteasome subunit alpha type-5 isoform 1 [Homo... 69 9e-12
Alignment gi|NP_002783.1| proteasome subunit alpha type-7 [Homo sapiens]. 61 2e-09
>ref|NP_002792.1| proteasome subunit beta type-10 precursor [Homo sapiens].
Length = 273
Score = 484 bits (1247), Expect = e-137
Identities = 244/273 (89%), Positives = 254/273 (93%)
Frame = +3
Query: 147 MQKIALEPLGGFSFENCQRNASLERALPGFRVPHALKTGTTIAGLVFQDGVILGADTRAT 326
M K ALEP GGFSFENCQRNASLER LPG +VPHA KTGTTIAGLVFQDGVILGADTRAT
Sbjct: 1 MLKPALEPRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRAT 60
Query: 327 NDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTR 506
NDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRM AS +ELHALSTGREPRVATVTR
Sbjct: 61 NDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTR 120
Query: 507 MLRQKLFRYQGHVGASLIVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDR 686
+LRQ LFRYQGHVGASLIVGG+D TGPQLY VHPHGSYSRLPFTALGSGQDAALAVLEDR
Sbjct: 121 ILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDR 180
Query: 687 FQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDACVIMGTGAKLLRTLSSPTKPTERSSQ 866
FQPNMTLEAAQGLLVEA+TAGIL DLGSGGNVDACVI TGAKLLRTLSSPT+P +RS +
Sbjct: 181 FQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGR 240
Query: 867 YRFAPGTTAVLSQTVMPLTLELVEETVQAMDVE 965
Y F PGTTAVL+QTV PLTLELVEETVQAM+VE
Sbjct: 241 YHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE 273
>ref|NP_002790.1| proteasome subunit beta type-7 proprotein [Homo sapiens].
Length = 277
Score = 327 bits (838), Expect = 1e-89
Identities = 156/266 (58%), Positives = 203/266 (76%), Gaps = 2/266 (0%)
Frame = +3
Query: 168 PLGGFSFENCQRNASLER--ALPGFRVPHALKTGTTIAGLVFQDGVILGADTRATNDSVV 341
P+GGFSF+NC+RNA LE A G+++P KTGTTIAG+V++DG++LGADTRAT VV
Sbjct: 10 PVGGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVV 69
Query: 342 ADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQK 521
ADK+C KIHFI+P IYCCGAG AAD +MTT++ +SN+ELH+LSTGR PRV T RML+Q
Sbjct: 70 ADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQM 129
Query: 522 LFRYQGHVGASLIVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNM 701
LFRYQG++GA+L++GG+D TGP LYS++PHGS +LP+ +GSG AA+AV ED+F+P+M
Sbjct: 130 LFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDM 189
Query: 702 TLEAAQGLLVEAITAGILSDLGSGGNVDACVIMGTGAKLLRTLSSPTKPTERSSQYRFAP 881
E A+ L+ EAI AGI +DLGSG N+D CVI LR + P K R +YR
Sbjct: 190 EEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEK 249
Query: 882 GTTAVLSQTVMPLTLELVEETVQAMD 959
GTTAVL++ + PL +E++EETVQ MD
Sbjct: 250 GTTAVLTEKITPLEIEVLEETVQTMD 275
>ref|NP_002789.1| proteasome subunit beta type-6 precursor [Homo sapiens].
Length = 239
Score = 96.3 bits (238), Expect = 4e-20
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 1/189 (0%)
Frame = +3
Query: 252 LKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTT 431
+ TGTTI + F GV+LGAD+R T S +A++ +K+ I +I+CC +G AAD +
Sbjct: 31 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVA 90
Query: 432 RMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVGGID-FTGPQLYSVHP 608
+ H++ P V T + ++ +RY+ + A +I+ G D G Q+YSV
Sbjct: 91 DAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 150
Query: 609 HGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDA 788
G R F GSG ++ ++ MT E A+ + D SGG +
Sbjct: 151 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 210
Query: 789 CVIMGTGAK 815
I +G +
Sbjct: 211 AAIAESGVE 219
>ref|NP_002791.1| proteasome subunit beta type-9 proprotein [Homo sapiens].
Length = 219
Score = 94.0 bits (232), Expect = 2e-19
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 3/202 (1%)
Frame = +3
Query: 213 LERALPGFRVPHA--LKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKI 386
L P +P A + TGTTI + F GV++G+D+R + V ++ +K+ + +I
Sbjct: 2 LRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERI 61
Query: 387 YCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVG 566
YC +G AADA+ MAA +ELH + P V ++R ++Y+ + A L+V
Sbjct: 62 YCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVA 121
Query: 567 GID-FTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAIT 743
G D G Q+Y G +R PF GSG ++ ++P M+ E + +AI
Sbjct: 122 GWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIA 180
Query: 744 AGILSDLGSGGNVDACVIMGTG 809
+ D SGG + I G
Sbjct: 181 LAMSRDGSSGGVIYLVTITAAG 202
>ref|NP_004150.1| proteasome subunit beta type-8 isoform E1 proprotein [Homo
sapiens].
Length = 272
Score = 81.6 bits (200), Expect = 1e-15
Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 2/231 (0%)
Frame = +3
Query: 99 PTPLTSIPLDCPAHLDMQKIALEPLGGFSFENCQRNASLERALPGFRVPHALKTGTTIAG 278
PTP++S CP L+ + + LGG + +RN +E A GTT
Sbjct: 34 PTPVSS---GCPG-LEPTEF-FQSLGG----DGERNVQIEMA-----------HGTTTLA 73
Query: 279 LVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMAASNIEL 458
FQ GVI D+RA+ S ++ K+ I P + +G AAD + R+ A L
Sbjct: 74 FKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRL 133
Query: 459 HALSTGREPRVATVTRMLRQKLFRYQGHVGASL--IVGGIDFTGPQLYSVHPHGSYSRLP 632
+ L G V+ +++L + +Y+G +G S+ ++ G D GP LY V HG+
Sbjct: 134 YYLRNGERISVSAASKLLSNMMCQYRG-MGLSMGSMICGWDKKGPGLYYVDEHGTRLSGN 192
Query: 633 FTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVD 785
+ GSG A V++ ++PN++ E A L AI D SGG V+
Sbjct: 193 MFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVN 243
>ref|NP_002788.1| proteasome subunit beta type-5 isoform 1 [Homo sapiens].
Length = 263
Score = 80.5 bits (197), Expect = 2e-15
Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Frame = +3
Query: 213 LERALPGFRVPHA----LKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAP 380
L A PG+ VP + GTT F+ GVI+ AD+RAT + +A ++ +K+ I P
Sbjct: 39 LSLAAPGWGVPEEPGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINP 98
Query: 381 KIYCCGAGVAADAEMTTRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASL- 557
+ AG AAD R+ A ++ L VA +++L +++Y+G +G S+
Sbjct: 99 YLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG-MGLSMG 157
Query: 558 -IVGGIDFTGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVE 734
++ G D GP LY V G+ ++GSG A V++ + ++ +E A L
Sbjct: 158 TMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARR 217
Query: 735 AITAGILSDLGSGGNVD 785
AI D SGG V+
Sbjct: 218 AIYQATYRDAYSGGAVN 234
>ref|NP_683720.2| proteasome subunit beta type-8 isoform E2 proprotein [Homo
sapiens].
Length = 276
Score = 79.7 bits (195), Expect = 4e-15
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 2/177 (1%)
Frame = +3
Query: 261 GTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMA 440
GTT FQ GVI D+RA+ S ++ K+ I P + +G AAD + R+
Sbjct: 72 GTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLL 131
Query: 441 ASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASL--IVGGIDFTGPQLYSVHPHG 614
A L+ L G V+ +++L + +Y+G +G S+ ++ G D GP LY V HG
Sbjct: 132 AKECRLYYLRNGERISVSAASKLLSNMMCQYRG-MGLSMGSMICGWDKKGPGLYYVDEHG 190
Query: 615 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVD 785
+ + GSG A V++ ++PN++ E A L AI D SGG V+
Sbjct: 191 TRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVN 247
>ref|NP_001093250.1| proteasome subunit beta type-11 precursor [Homo sapiens].
Length = 300
Score = 73.6 bits (179), Expect = 3e-13
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 1/187 (0%)
Frame = +3
Query: 252 LKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTT 431
L GTT F+ GVI ADTR++ S VA + K+ + + +G +AD
Sbjct: 46 LAHGTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWY 105
Query: 432 RMAASNIELHALSTGREPRVATVTRMLRQKLFRYQG-HVGASLIVGGIDFTGPQLYSVHP 608
R+ + L L G+ P VA+ ++L + +Y+G + + + G D +GP+L+ V+
Sbjct: 106 RVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSGPELFYVYS 165
Query: 609 HGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDA 788
G+ + ++GSG A VL+ ++ +M+ + A L A+ D SGG+VD
Sbjct: 166 DGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDL 225
Query: 789 CVIMGTG 809
+ +G
Sbjct: 226 FHVRESG 232
>ref|NP_002781.2| proteasome subunit alpha type-5 isoform 1 [Homo sapiens].
Length = 241
Score = 68.6 bits (166), Expect = 9e-12
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Frame = +3
Query: 249 ALKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMT 428
A+K G+T G+ +GV L + R T+ ++ S EKI I I C +G+ ADA+
Sbjct: 30 AIKLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTL 88
Query: 429 TRMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGH----------VGASLIVGGIDF 578
A + H + V +VT+ + ++ G +L+ GG+D
Sbjct: 89 IDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE 148
Query: 579 TGPQLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAA 716
GPQL+ + P G++ + A+GS + A + L++ + +MTL+ A
Sbjct: 149 KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEA 194
>ref|NP_002783.1| proteasome subunit alpha type-7 [Homo sapiens].
Length = 248
Score = 61.2 bits (147), Expect = 2e-09
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 9/192 (4%)
Frame = +3
Query: 249 ALKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMT 428
A+K G+T G+ +D V+LG + ++ + +++ KI + + AG+ ADA +
Sbjct: 25 AVKKGSTAVGVRGRDIVVLGVEKKSVA-KLQDERTVRKICALDDNVCMAFAGLTADARIV 83
Query: 429 TRMAASNIELHALSTGREPRVATVTRM---LRQKLFRYQGH--VGASLIVGGIDFTG-PQ 590
A + H L+ V +TR L+Q+ + G G S ++ G DF G P+
Sbjct: 84 INRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPR 143
Query: 591 LYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQ--GLLVEAITAGILSDL 764
LY P G+Y A+G G + LE N T EA + L ++ + +L +
Sbjct: 144 LYQTDPSGTYHAWKANAIGRGAKSVREFLE----KNYTDEAIETDDLTIKLVIKALLEVV 199
Query: 765 GSGG-NVDACVI 797
SGG N++ V+
Sbjct: 200 QSGGKNIELAVM 211
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,411,607
Number of extensions: 1509131
Number of successful extensions: 6686
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 6647
Number of HSP's successfully gapped: 19
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007778
(1057 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896204.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 400 e-109
Sscrofa_Chr04 291 4e-76
>gb|GL896204.1| Sus scrofa unplaced genomic scaffold chrU_scaffold568
Length = 93355
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 1 tcatgctgtgaggaaatgtgaaagcgaaagcagttaagctcagtcgtgcaggacaaggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79121 tcatgctgtgaggaaatgtgaaagcgaaagcagttaagctcagtcgtgcaggacaaggac 79062
Query: 61 aaaggacaaggctgtggccttctttgcttggtgctggtcctactcctctgacctccatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79061 aaaggacaaggctgtggccttctttgcttggtgctggtcctactcctctgacctccatac 79002
Query: 121 ccctggactgccctgcccacctggacatgcagaagatagcgctagagcccctagggggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79001 ccctggactgccctgcccacctggacatgcagaagatagcgctagagcccctagggggct 78942
Query: 181 tttcctttgagaactgccagag 202
||||||||||||||||||||||
Sbjct: 78941 tttcctttgagaactgccagag 78920
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 705 ctggaggcagcacaggggctgctggtggaagccattactgcagggatcctaagtgacctg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76841 ctggaggcagcacaggggctgctggtggaagccattactgcagggatcctaagtgacctg 76782
Query: 765 ggctctgggggcaatgtggatgcatgtgtgatcatggggaccggtgccaagctgctgcga 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76781 ggctctgggggcaatgtggatgcatgtgtgatcatggggaccggtgccaagctgctgcga 76722
Query: 825 acactgagctctcccacaaagcccacagaaag 856
||||||||||||||||||||||||||||||||
Sbjct: 76721 acactgagctctcccacaaagcccacagaaag 76690
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 529 ggtaccagggccatgtgggcgcgtcgctaatcgtgggcggcatagacttcacaggacccc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77894 ggtaccagggccatgtgggcgcgtcgctaatcgtgggcggcatagacttcacaggacccc 77835
Query: 589 agctctacagcgtgcacccccatgggtcctacagccgtctgcccttcacggccctagg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77834 agctctacagcgtgcacccccatgggtcctacagccgtctgcccttcacggccctagg 77777
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 918 ctgaccctggagctggtggaagaaactgtgcaggccatggatgtggagtgaagtaagcct 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76471 ctgaccctggagctggtggaagaaactgtgcaggccatggatgtggagtgaagtaagcct 76412
Query: 978 aggcttacttggaataaggaacaaggaggaataaacccagaaaacacc 1025
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76411 aggcttacttggaataaggaacaaggaggaataaacccagaaaacacc 76364
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 286 tccaggacggggtaatcctgggcgcggatacgcgggccactaacgactcggtcgtggcgg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78527 tccaggacggggtaatcctgggcgcggatacgcgggccactaacgactcggtcgtggcgg 78468
Query: 346 acaagagctgcgaaaagatccacttcatcgcccccaaaatcta 388
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78467 acaagagctgcgaaaagatccacttcatcgcccccaaaatcta 78425
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 201 agaaatgcatccttggaacgcgccctccctgggttccgggtccctcacgcactcaagacg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78702 agaaatgcatccttggaacgcgccctccctgggttccgggtccctcacgcactcaagacg 78643
Query: 261 gggaccaccattgcaggtcttgtattccagg 291
|||||||||||||||||||||||||||||||
Sbjct: 78642 gggaccaccattgcaggtcttgtattccagg 78612
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 644 aggctccggccaagatgcagccctggcagtgctagaagaccggttccagcccaacatgac 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77669 aggctccggccaagatgcagccctggcagtgctagaagaccggttccagcccaacatgac 77610
Query: 704 t 704
|
Sbjct: 77609 t 77609
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 473 cggccgcgagccgcgcgtggccactgtcactcgcatgttacgccagaagctcttccggt 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78221 cggccgcgagccgcgcgtggccactgtcactcgcatgttacgccagaagctcttccggt 78163
>Sscrofa_Chr04
|| Length = 143465943
Score = 291 bits (147), Expect = 4e-76
Identities = 165/171 (96%)
Strand = Plus / Minus
Query: 855 agatccagccagtatcgctttgcccctgggaccacagctgtcctgtcccagacagtgatg 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97844371 agatccagccagtatcgctttgcccctgggaccacagctgtcctgtcccagacagtgatg 97844312
Query: 915 ccgctgaccctggagctggtggaagaaactgtgcaggccatggatgtggagtgaagtaag 974
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct: 97844311 ccgctgaccctggagctggtggaagaaagtgtgcaggccatggatgtggagtgaaatagg 97844252
Query: 975 cctaggcttacttggaataaggaacaaggaggaataaacccagaaaacacc 1025
|||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 97844251 cctacgtttacttggaacaaggaacaaggaggaataaacccagaaaacacc 97844201
Score = 192 bits (97), Expect = 3e-46
Identities = 128/137 (93%), Gaps = 1/137 (0%)
Strand = Plus / Minus
Query: 543 gtgggcgcgtcgctaatcgtgggcggcatagacttcacaggaccccagctctacagcgtg 602
||||||| |||||| ||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 97844787 gtgggcgggtcgctgatcgtgggcggtgtagacttcacaggaccgcagctctacagcgtg 97844728
Query: 603 cacccccatgggtcctacagccgtctgcccttcacggccctaggctccggccaagatgca 662
||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||
Sbjct: 97844727 cacccccatgggtcctacagctgtctgcccttcatggccctaggctcgggccaagatgc- 97844669
Query: 663 gccctggcagtgctaga 679
|||||||||||||||||
Sbjct: 97844668 gccctggcagtgctaga 97844652
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,446,445
Number of extensions: 169
Number of successful extensions: 169
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 10
Length of query: 1057
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1036
Effective length of database: 2,808,413,156
Effective search space: 2909516029616
Effective search space used: 2909516029616
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)