Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007779
(2808 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073247.1| ER lumen protein retaining receptor 2 [Bos t... 426 e-119
Alignment gi|NP_001069963.1| ER lumen protein retaining receptor 1 [Bos t... 374 e-103
Alignment gi|NP_001179162.1| ER lumen protein retaining receptor 3 [Bos t... 342 1e-93
Alignment gi|XP_002687970.1| PREDICTED: KDEL receptor 3-like [Bos taurus]. 342 1e-93
>ref|NP_001073247.1| ER lumen protein retaining receptor 2 [Bos taurus].
Length = 212
Score = 426 bits (1096), Expect = e-119
Identities = 212/212 (100%), Positives = 212/212 (100%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW
Sbjct: 61 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 757
VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA
Sbjct: 181 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 212
>ref|NP_001069963.1| ER lumen protein retaining receptor 1 [Bos taurus].
Length = 212
Score = 374 bits (960), Expect = e-103
Identities = 175/212 (82%), Positives = 199/212 (93%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MN+FR GDLSHL AI++LLLKIWK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLV+P L+FLVNHDF+PLEILW
Sbjct: 61 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVIPTAILAFLVNHDFTPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 757
+VAG+VQT+LYCDFFYLYITKVLKGKKLSLPA
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKKLSLPA 212
>ref|NP_001179162.1| ER lumen protein retaining receptor 3 [Bos taurus].
Length = 214
Score = 342 bits (877), Expect = 1e-93
Identities = 162/211 (76%), Positives = 190/211 (90%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MN+FR+ GDLSHL A+++LL KIW+++ CAGISGKSQ+LFALVFTTRYLDLFT+FIS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLGKIWRSKCCAGISGKSQILFALVFTTRYLDLFTNFISIYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
T MK++++ C+Y TVY+IY KF+ T+D +DTFR+EFL+VPV GLSFL N+ F+PLEILW
Sbjct: 61 TVMKMVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYL NWI R+ E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLP 754
VV+GVVQTI YCDFFYLY+TKVLKGKKLSLP
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKKLSLP 211
>ref|XP_002687970.1| PREDICTED: KDEL receptor 3-like [Bos taurus].
Length = 214
Score = 342 bits (877), Expect = 1e-93
Identities = 162/211 (76%), Positives = 190/211 (90%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MN+FR+ GDLSHL A+++LL KIW+++ CAGISGKSQ+LFALVFTTRYLDLFT+FIS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLGKIWRSKCCAGISGKSQILFALVFTTRYLDLFTNFISIYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
T MK++++ C+Y TVY+IY KF+ T+D +DTFR+EFL+VPV GLSFL N+ F+PLEILW
Sbjct: 61 TVMKMVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYL NWI R+ E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLP 754
VV+GVVQTI YCDFFYLY+TKVLKGKKLSLP
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKKLSLP 211
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 93,068,425
Number of extensions: 2344654
Number of successful extensions: 7008
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6994
Number of HSP's successfully gapped: 4
Length of query: 936
Length of database: 17,681,374
Length adjustment: 112
Effective length of query: 824
Effective length of database: 13,975,518
Effective search space: 11515826832
Effective search space used: 11515826832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007779
(2808 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850429.1| PREDICTED: similar to ER lumen protein retainin... 426 e-119
Alignment gi|XP_861472.1| PREDICTED: similar to ER lumen protein retainin... 420 e-117
Alignment gi|XP_861444.1| PREDICTED: similar to ER lumen protein retainin... 382 e-106
Alignment gi|XP_541521.2| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) en... 374 e-103
Alignment gi|XP_531737.2| PREDICTED: similar to ER lumen protein retainin... 340 3e-93
Alignment gi|XP_848462.1| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) en... 257 5e-68
Alignment gi|XP_861402.1| PREDICTED: similar to ER lumen protein retainin... 235 2e-61
>ref|XP_850429.1| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL
receptor 2) (KDEL endoplasmic reticulum protein
retention receptor 2) isoform 1 [Canis familiaris].
Length = 212
Score = 426 bits (1096), Expect = e-119
Identities = 212/212 (100%), Positives = 212/212 (100%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW
Sbjct: 61 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 757
VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA
Sbjct: 181 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 212
>ref|XP_861472.1| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL
receptor 2) (KDEL endoplasmic reticulum protein
retention receptor 2) isoform 4 [Canis familiaris].
Length = 217
Score = 420 bits (1080), Expect = e-117
Identities = 212/217 (97%), Positives = 212/217 (97%), Gaps = 5/217 (2%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 302 TSMK-----LIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSP 466
TSMK LIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSP
Sbjct: 61 TSMKQLLTPLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSP 120
Query: 467 LEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGF 646
LEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGF
Sbjct: 121 LEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGF 180
Query: 647 FDLIAVVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 757
FDLIAVVAGVVQTILYCDFFYLYITKVLKGKKLSLPA
Sbjct: 181 FDLIAVVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 217
>ref|XP_861444.1| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL
receptor 2) (KDEL endoplasmic reticulum protein
retention receptor 2) isoform 3 [Canis familiaris].
Length = 195
Score = 382 bits (982), Expect = e-106
Identities = 195/212 (91%), Positives = 195/212 (91%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE
Sbjct: 61 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE--- 117
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
LFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA
Sbjct: 118 --------------LFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 163
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 757
VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA
Sbjct: 164 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 195
>ref|XP_541521.2| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum
protein retention receptor 1 (predicted) [Canis
familiaris].
Length = 212
Score = 374 bits (961), Expect = e-103
Identities = 176/212 (83%), Positives = 199/212 (93%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MN+FR GDLSHL AI++LLLKIWK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP L+FLVNHDF+PLEILW
Sbjct: 61 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 757
+VAG+VQT+LYCDFFYLYITKVLKGKKLSLPA
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKKLSLPA 212
>ref|XP_531737.2| PREDICTED: similar to ER lumen protein retaining receptor 3 (KDEL
receptor 3) (KDEL endoplasmic reticulum protein
retention receptor 3) [Canis familiaris].
Length = 214
Score = 340 bits (873), Expect = 3e-93
Identities = 161/211 (76%), Positives = 190/211 (90%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MN+FR+ GDLSHL A+++LL KIW+++ C+GISGKSQ+LFALVFTTRYLDLFT+FIS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLGKIWRSKCCSGISGKSQILFALVFTTRYLDLFTNFISIYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
T MK++++ C+Y TVY+IY KF+ T+D +DTFR+EFL+VPV GLSFL N+ F+PLEILW
Sbjct: 61 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYL NWI R+ E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLP 754
VV+GVVQTI YCDFFYLY+TKVLKGKKLSLP
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKKLSLP 211
>ref|XP_848462.1| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum
protein retention receptor 1 (predicted) [Canis
familiaris].
Length = 170
Score = 257 bits (656), Expect = 5e-68
Identities = 128/198 (64%), Positives = 151/198 (76%)
Frame = +2
Query: 164 AIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYAT 343
+I++L LKIWK+RSCAGISGKSQ+LFA+VFT RYLDL T++ISLYNT MK++YIACS+ T
Sbjct: 10 SIILLPLKIWKSRSCAGISGKSQVLFAVVFTARYLDLLTNYISLYNTYMKVVYIACSFTT 69
Query: 344 VYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQ 523
V++IY +ILWTFSIYLE VAILPQ
Sbjct: 70 VWMIY-------------------------------------KILWTFSIYLELVAILPQ 92
Query: 524 LFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIAVVAGVVQTILYCDF 703
LF +SKTG+AETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA+VAG+VQT+LYCDF
Sbjct: 93 LFTVSKTGKAETITSHYLFALGVYRTLYLCNWIWRYHFEGFFDLIAIVAGLVQTVLYCDF 152
Query: 704 FYLYITKVLKGKKLSLPA 757
FYLYITKVLKGKKLSLPA
Sbjct: 153 FYLYITKVLKGKKLSLPA 170
>ref|XP_861402.1| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL
receptor 2) (KDEL endoplasmic reticulum protein
retention receptor 2) isoform 2 [Canis familiaris].
Length = 207
Score = 235 bits (599), Expect = 2e-61
Identities = 117/117 (100%), Positives = 117/117 (100%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 472
TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE
Sbjct: 61 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 117
Score = 72.8 bits (177), Expect(2) = 1e-17
Identities = 33/36 (91%), Positives = 33/36 (91%)
Frame = +1
Query: 886 WLCANPEGKNQKVSV*CILPYLFLLLCTKIFLHKET 993
WLC NPE KNQKVSV CILPYLFLLLCTKIFLHKET
Sbjct: 172 WLCKNPEEKNQKVSVKCILPYLFLLLCTKIFLHKET 207
Score = 37.4 bits (85), Expect(2) = 1e-17
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = +3
Query: 732 RGRSSVCQPKCQRPSPASALQ 794
R RSSVC KCQRPSPAS LQ
Sbjct: 120 RERSSVCPRKCQRPSPASVLQ 140
Score = 55.1 bits (131), Expect = 4e-07
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 12/74 (16%)
Frame = +2
Query: 776 TSICP------------SGARTGFLPQQRHKMLDTEHQKRHSSVADGHRGSVRTQRERTR 919
+S+CP GART FLPQQRHKMLDTE+QK +S VAD H+ + E+ +
Sbjct: 123 SSVCPRKCQRPSPASVLQGARTEFLPQQRHKMLDTENQKLNSFVADSHQWLCKNPEEKNQ 182
Query: 920 RFLFNASCLIFFYY 961
+ + C++ + +
Sbjct: 183 K--VSVKCILPYLF 194
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 96,226,697
Number of extensions: 2326244
Number of successful extensions: 7144
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7138
Number of HSP's successfully gapped: 11
Length of query: 936
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 824
Effective length of database: 15,140,872
Effective search space: 12476078528
Effective search space used: 12476078528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007779
(2808 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127317.2| PREDICTED: ER lumen protein retaining recept... 374 e-103
Alignment gi|XP_003126099.2| PREDICTED: ER lumen protein retaining recept... 340 3e-93
Alignment gi|XP_003361228.1| PREDICTED: hypothetical protein LOC100625446... 269 7e-72
>ref|XP_003127317.2| PREDICTED: ER lumen protein retaining receptor 1-like isoform 1
[Sus scrofa].
Length = 212
Score = 374 bits (961), Expect = e-103
Identities = 176/212 (83%), Positives = 199/212 (93%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MN+FR GDLSHL AI++LLLKIWK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP L+FLVNHDF+PLEILW
Sbjct: 61 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 757
+VAG+VQT+LYCDFFYLYITKVLKGKKLSLPA
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKKLSLPA 212
>ref|XP_003126099.2| PREDICTED: ER lumen protein retaining receptor 3-like [Sus scrofa].
Length = 214
Score = 340 bits (872), Expect = 3e-93
Identities = 161/211 (76%), Positives = 189/211 (89%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MN+FR+ GDLSHL A+++LL KIW+++ C GISGKSQ+LFALVFTTRYLDLFT+FIS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLGKIWRSKCCTGISGKSQILFALVFTTRYLDLFTTFISIYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
T MK++++ C+Y TVY+IY KF+ T+D +DTFR+EFL+VPV GLSFL N+ F+PLEILW
Sbjct: 61 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYL NWI R+ E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLP 754
VV+GVVQTI YCDFFYLY+TKVLKGKKLSLP
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKKLSLP 211
>ref|XP_003361228.1| PREDICTED: hypothetical protein LOC100625446 [Sus scrofa].
Length = 298
Score = 269 bits (687), Expect = 7e-72
Identities = 135/139 (97%), Positives = 136/139 (97%)
Frame = +2
Query: 194 KTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYATVYLIYMKFKA 373
K + AGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYATVYLIYMKFKA
Sbjct: 74 KPKVPAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYATVYLIYMKFKA 133
Query: 374 TYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEA 553
TYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEA
Sbjct: 134 TYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEA 193
Query: 554 ETITTHYLFFLGLYRALYL 610
ETITTHYLFFLGLYRALYL
Sbjct: 194 ETITTHYLFFLGLYRALYL 212
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 60,490,760
Number of extensions: 1598943
Number of successful extensions: 4470
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4466
Number of HSP's successfully gapped: 3
Length of query: 936
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 828
Effective length of database: 8,655,056
Effective search space: 7166386368
Effective search space used: 7166386368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007779
(2808 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080117.1| ER lumen protein retaining receptor 2 [Mus musc... 426 e-119
Alignment gi|NP_598711.1| ER lumen protein retaining receptor 1 [Mus musc... 374 e-103
Alignment gi|NP_598851.2| ER lumen protein retaining receptor 3 [Mus musc... 341 2e-93
>ref|NP_080117.1| ER lumen protein retaining receptor 2 [Mus musculus].
Length = 212
Score = 426 bits (1096), Expect = e-119
Identities = 212/212 (100%), Positives = 212/212 (100%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW
Sbjct: 61 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 757
VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA
Sbjct: 181 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 212
>ref|NP_598711.1| ER lumen protein retaining receptor 1 [Mus musculus].
Length = 212
Score = 374 bits (961), Expect = e-103
Identities = 176/212 (83%), Positives = 199/212 (93%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MN+FR GDLSHL AI++LLLKIWK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP L+FLVNHDF+PLEILW
Sbjct: 61 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 757
+VAG+VQT+LYCDFFYLYITKVLKGKKLSLPA
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKKLSLPA 212
>ref|NP_598851.2| ER lumen protein retaining receptor 3 [Mus musculus].
Length = 214
Score = 341 bits (874), Expect = 2e-93
Identities = 158/211 (74%), Positives = 192/211 (90%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MN+FR+ GDLSHL A+++LL+KIW+++SCAGISGKSQ+LFALVFTTRYLDLF++FIS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLVKIWRSKSCAGISGKSQILFALVFTTRYLDLFSNFISIYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
T MK++++ C+Y TVY+IY KF+ T+D +DTFR+EFL+VPV GLSFLVN+ ++P+E+LW
Sbjct: 61 TVMKVVFLLCAYVTVYMIYWKFRKTFDIENDTFRLEFLLVPVTGLSFLVNYSYTPMEVLW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYR LYL NWI R+ E F+D I+
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRLLYLANWIRRYQTENFYDQIS 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLP 754
VV+GVVQTI YCDFFYLY+TKVLKGKKLSLP
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKKLSLP 211
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 81,191,573
Number of extensions: 1977848
Number of successful extensions: 5888
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5885
Number of HSP's successfully gapped: 3
Length of query: 936
Length of database: 15,617,559
Length adjustment: 111
Effective length of query: 825
Effective length of database: 12,283,563
Effective search space: 10133939475
Effective search space used: 10133939475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007779
(2808 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006845.1| ER lumen protein retaining receptor 2 isoform 1... 423 e-118
Alignment gi|NP_006792.1| ER lumen protein retaining receptor 1 [Homo sap... 375 e-103
Alignment gi|NP_006846.1| ER lumen protein retaining receptor 3 isoform a... 336 8e-92
Alignment gi|NP_057839.1| ER lumen protein retaining receptor 3 isoform b... 317 3e-86
Alignment gi|NP_001094073.1| ER lumen protein retaining receptor 2 isofor... 232 2e-60
>ref|NP_006845.1| ER lumen protein retaining receptor 2 isoform 1 [Homo sapiens].
Length = 212
Score = 423 bits (1088), Expect = e-118
Identities = 209/212 (98%), Positives = 212/212 (100%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
TSMK+IY+ACSYATVYLIY+KFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW
Sbjct: 61 TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 757
VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA
Sbjct: 181 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 212
>ref|NP_006792.1| ER lumen protein retaining receptor 1 [Homo sapiens].
Length = 212
Score = 375 bits (963), Expect = e-103
Identities = 177/212 (83%), Positives = 199/212 (93%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MN+FR GDLSHL AI++LLLKIWK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
T MK++YIACS+ TV+LIY KFKATYDGNHDTFRVEFLVVP L+FLVNHDF+PLEILW
Sbjct: 61 TCMKVVYIACSFTTVWLIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLPA 757
+VAG+VQT+LYCDFFYLYITKVLKGKKLSLPA
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKKLSLPA 212
>ref|NP_006846.1| ER lumen protein retaining receptor 3 isoform a [Homo sapiens].
Length = 214
Score = 336 bits (861), Expect = 8e-92
Identities = 160/211 (75%), Positives = 188/211 (89%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MN+FR+ GDLSHL A+++LL KIW+++ C GISGKSQ+LFALVFTTRYLDLFT+FIS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
T MK++++ C+Y TVY+IY KF+ T+D +DTFR+EFL+VPV GLSFL N+ F+ LEILW
Sbjct: 61 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYL NWI R+ E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
Query: 662 VVAGVVQTILYCDFFYLYITKVLKGKKLSLP 754
VV+GVVQTI YCDFFYLY+TKVLKGKKLSLP
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKKLSLP 211
>ref|NP_057839.1| ER lumen protein retaining receptor 3 isoform b [Homo sapiens].
Length = 220
Score = 317 bits (813), Expect = 3e-86
Identities = 150/201 (74%), Positives = 178/201 (88%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MN+FR+ GDLSHL A+++LL KIW+++ C GISGKSQ+LFALVFTTRYLDLFT+FIS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 481
T MK++++ C+Y TVY+IY KF+ T+D +DTFR+EFL+VPV GLSFL N+ F+ LEILW
Sbjct: 61 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW 120
Query: 482 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 661
TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYL NWI R+ E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
Query: 662 VVAGVVQTILYCDFFYLYITK 724
VV+GVVQTI YCDFFYLY+TK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTK 201
>ref|NP_001094073.1| ER lumen protein retaining receptor 2 isoform 2 [Homo sapiens].
Length = 186
Score = 232 bits (591), Expect = 2e-60
Identities = 114/117 (97%), Positives = 117/117 (100%)
Frame = +2
Query: 122 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 301
MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 302 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 472
TSMK+IY+ACSYATVYLIY+KFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE
Sbjct: 61 TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 117
Score = 54.7 bits (130), Expect(2) = 6e-13
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = +2
Query: 794 GARTGFLPQQRHKMLDTEHQKRHSSVADGHRGSVRTQRERTRR 922
GART FLPQQRHKMLDTE+QK +S VAD H+ + E++++
Sbjct: 141 GARTEFLPQQRHKMLDTENQKLNSFVADSHQWLCKNAEEKSQK 183
Score = 39.7 bits (91), Expect(2) = 6e-13
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = +3
Query: 732 RGRSSVCQPKCQRPSPASALQ 794
R RSSVCQ KCQRPSPAS LQ
Sbjct: 120 RERSSVCQHKCQRPSPASVLQ 140
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 94,905,921
Number of extensions: 2309658
Number of successful extensions: 7052
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7047
Number of HSP's successfully gapped: 7
Length of query: 936
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 824
Effective length of database: 14,605,196
Effective search space: 12034681504
Effective search space used: 12034681504
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007779
(2808 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893800.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1227 0.0
Sscrofa_Chr06 212 8e-52
Sscrofa_Chr05 88 3e-14
>gb|GL893800.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2529
Length = 23488
Score = 1227 bits (619), Expect = 0.0
Identities = 657/676 (97%)
Strand = Plus / Plus
Query: 1773 agctcttgcatgatttatcttgtgttaccatcctaaataaatgttttattaaacatagaa 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16677 agctcttgcatgatttatcttgtgttaccatcctaaataaatgttttattaaacatagaa 16736
Query: 1833 taaactgtcnnnnnnnnaatgaatcaggcttttggaacagcctgtgttaggatggctgtt 1892
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16737 taaactgtcttttttttaatgaatcaggcttttggaacagcctgtgttaggatggctgtt 16796
Query: 1893 ttggattttcagttggcaacaaaagctctccctggggctgcaaacgtttgctctccactt 1952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16797 ttggattttcagttggcaacaaaagctctccctggggctgcaaacgtttgctctccactt 16856
Query: 1953 aataatctaaaactttttgtaacttttgtaagaattggaatttccctccttattttgctg 2012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16857 aataatctaaaactttttgtaacttttgtaagaattggaatttccctccttattttgctg 16916
Query: 2013 tcatatcaatttgctgcannnnnnnnnnnatttctgtgaaaaccgtagactttgttttta 2072
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 16917 tcatatcaatttgctgcatttttttttttatttctgtgaaaaccgtagactttgttttta 16976
Query: 2073 tgtgatgccccgtaaatgttaaagtgttgaatactaacagtgtttattccaagaagaaag 2132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16977 tgtgatgccccgtaaatgttaaagtgttgaatactaacagtgtttattccaagaagaaag 17036
Query: 2133 atgtagtagttttgcttgccacattaaagtatcttgtggaggaagggagctggatggggt 2192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17037 atgtagtagttttgcttgccacattaaagtatcttgtggaggaagggagctggatggggt 17096
Query: 2193 ttattttgatcagtgtgtctcttaatagctttctaaataggtggtgtcactgcacagctt 2252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17097 ttattttgatcagtgtgtctcttaatagctttctaaataggtggtgtcactgcacagctt 17156
Query: 2253 aacctgctgtcttcctcgctctcatcttgctctccctccccgcccggcctcacacctttg 2312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17157 aacctgctgtcttcctcgctctcatcttgctctccctccccgcccggcctcacacctttg 17216
Query: 2313 cttttgggtatcagggtgtctttccagcatcccagccttggtttagtctgtgtttttatc 2372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17217 cttttgggtatcagggtgtctttccagcatcccagccttggtttagtctgtgtttttatc 17276
Query: 2373 ctctttggaagatgtcgatagcgtgaaggaagggtgagaaatcctgtcctaaggggagca 2432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17277 ctctttggaagatgtcgatagcgtgaaggaagggtgagaaatcctgtcctaaggggagca 17336
Query: 2433 gactccttgctgccca 2448
||||||||||||||||
Sbjct: 17337 gactccttgctgccca 17352
Score = 1197 bits (604), Expect = 0.0
Identities = 618/625 (98%)
Strand = Plus / Plus
Query: 1100 cttggaaattcttgattctttgtgtctgcaatgaaattgtactccttgacagttggtaga 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16004 cttggaaattcttgattctttgtgtctgcaatgaaattgtactccttgacagttggtaga 16063
Query: 1160 tcatatattcctccatcgctcagactcgcattccactctatttannnnnnngccaaaaga 1219
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 16064 tcatatattcctccatcgctcagactcgcattccactctatttatttttttgccaaaaga 16123
Query: 1220 caaggtatctttgaaattcgagacactacgtcccattcgatgcagttgttcccaggtctt 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16124 caaggtatctttgaaattcgagacactacgtcccattcgatgcagttgttcccaggtctt 16183
Query: 1280 ccacctgatgtggaaagccttccttggacgtcacagcactacagttcagcctgctaagga 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16184 ccacctgatgtggaaagccttccttggacgtcacagcactacagttcagcctgctaagga 16243
Query: 1340 tggcttgcaagtctccaggttttcattaccaaccccttaggcttctgaatgtaggtggag 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16244 tggcttgcaagtctccaggttttcattaccaaccccttaggcttctgaatgtaggtggag 16303
Query: 1400 tctcacgtaggggtcaccaaaggtgtctgctgtcctccgctgcctagaagcatcggtttg 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16304 tctcacgtaggggtcaccaaaggtgtctgctgtcctccgctgcctagaagcatcggtttg 16363
Query: 1460 agactgtcccaagggtgtcggggattcggtgacaggggccctgggctgcttgccgtctga 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16364 agactgtcccaagggtgtcggggattcggtgacaggggccctgggctgcttgccgtctga 16423
Query: 1520 gcgtgggctgcgagagacattcctgattttgcatcttggactcctctaaggaatggaaca 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16424 gcgtgggctgcgagagacattcctgattttgcatcttggactcctctaaggaatggaaca 16483
Query: 1580 caagtagttacctgtcactttaacatttcccattccagaagattcctacaaccatgtcca 1639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16484 caagtagttacctgtcactttaacatttcccattccagaagattcctacaaccatgtcca 16543
Query: 1640 tgctcagattcgaatgttgttgactagccacactgtggatagcaaaatgattgacctttt 1699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16544 tgctcagattcgaatgttgttgactagccacactgtggatagcaaaatgattgacctttt 16603
Query: 1700 aaaaaactggcagccgcacttgcca 1724
|||||||||||||||||||||||||
Sbjct: 16604 aaaaaactggcagccgcacttgcca 16628
Score = 617 bits (311), Expect = e-173
Identities = 339/353 (96%)
Strand = Plus / Plus
Query: 724 agtcctcaaggggaagaagctcagtctgccagcctaagtgccaaagaccatcaccagcat 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15629 agtcctcaaggggaagaagctcagtctgccagcctaagtgccaaagaccatcaccagcat 15688
Query: 784 ctgcccttcaggtgctcggacaggattcttaccacagcagaggcacaagatgcttgacac 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15689 ctgcccttcaggtgctcggacaggattcttaccacagcagaggcacaagatgcttgacac 15748
Query: 844 ggaacatcagaaacgccactcttctgttgcagatggtcaccgtggctctgtgcgaaccca 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15749 ggaacatcagaaacgccactcttctgttgcagatggtcaccgtggctctgtgcgaaccca 15808
Query: 904 gagggaaagaaccagaaggtttctgtttaatgcatcttgccttatcnnnnnnnattacta 963
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15809 gagggaaagaaccagaaggtttctgtttaatgcatcttgccttatctttttttattacta 15868
Query: 964 tgtacaaagannnnnnnacacaaagaaacttaatgctgtattaataaattcagtgtgtag 1023
|||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15869 tgtacaaagatttttttacacaaagaaacttaatgctgtattaataaattcagtgtgtag 15928
Query: 1024 cttcaattggggtagttgcaaaagtgaaggtttcgtgaggaataagtgcaaac 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15929 cttcaattggggtagttgcaaaagtgaaggtttcgtgaggaataagtgcaaac 15981
Score = 571 bits (288), Expect = e-160
Identities = 318/324 (98%), Gaps = 3/324 (0%)
Strand = Plus / Plus
Query: 2466 gggctcacacctgctcttgtgcctgtacataacacgcaagctggcatcggtccttggaga 2525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17455 gggctcacacctgctcttgtgcctgtacataacacgcaagctggcatcggtccttggaga 17514
Query: 2526 ggacagtgcacagagcacgccacctgatgtacgaagcgccagtgcctccgtcagtcattc 2585
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 17515 ggacagtgcacagagcacgccacctgatgtatgaagcgccagtgcctccgtcagtcattc 17574
Query: 2586 tgcccaagtgaaaataaagtggactcggccgttgccaccaccagggtgacctcctcagag 2645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17575 tgcccaagtgaaaataaagtggactcggccgttgccaccaccagggtgacctcctcagag 17634
Query: 2646 gtgcccgaggggagcgcgggactggggcagcggcggcggcagcctccccgcacacgctgg 2705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17635 gtgcccgaggggagcgcgggactggggcagcggcggcggcagcctccccgcacacgctgg 17694
Query: 2706 aagcagaggcactgtgtgatgcgcctcacgaagcactgtttcagaa-tgctctcac-tcc 2763
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 17695 aagcagaggcactgtgtgatgcgcctcacgaagcactgtttcagaattgctctcacttcc 17754
Query: 2764 tgaaataagg-tatcaggtaattc 2786
|||| |||| |||||||||||||
Sbjct: 17755 tgaataaaggttatcaggtaattc 17778
Score = 319 bits (161), Expect = 5e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 312 agctcatctacattgcctgctcctatgccaccgtgtacctgatctacatgaaatttaagg 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12172 agctcatctacattgcctgctcctatgccaccgtgtacctgatctacatgaaatttaagg 12231
Query: 372 caacctacgacggaaatcatgataccttccgagtggagtttctggtggtccctgtgggag 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12232 caacctacgacggaaatcatgataccttccgagtggagtttctggtggtccctgtgggag 12291
Query: 432 gcctctcgtttctagtcaatcacgatttctctcctcttgag 472
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 12292 gcctctcgtttctagtcaatcacgatttctctcctcttgag 12332
Score = 281 bits (142), Expect = 1e-72
Identities = 145/146 (99%)
Strand = Plus / Plus
Query: 471 agattctgtggaccttctccatctaccttgagtccgtggctatcctgccgcagctcttca 530
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 13606 agattctgtggaccttctccatctaccttgagtccgtggctatcctgccacagctcttca 13665
Query: 531 tgatcagcaagacgggggaggcggagaccatcaccacccactacctgttcttcctgggcc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13666 tgatcagcaagacgggggaggcggagaccatcaccacccactacctgttcttcctgggcc 13725
Query: 591 tctaccgcgccttgtacctcgtcaac 616
||||||||||||||||||||||||||
Sbjct: 13726 tctaccgcgccttgtacctcgtcaac 13751
Score = 202 bits (102), Expect = 8e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 212 ggtatttctgggaaaagccagcttctgtttgcactggtcttcacaacacgttacctggat 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8536 ggtatttctgggaaaagccagcttctgtttgcactggtcttcacaacacgttacctggat 8595
Query: 272 ctttttacttcatttatttcattatataacacgtctatgaag 313
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8596 ctttttacttcatttatttcattatataacacgtctatgaag 8637
>Sscrofa_Chr06
|| Length = 157765593
Score = 212 bits (107), Expect = 8e-52
Identities = 212/247 (85%)
Strand = Plus / Plus
Query: 479 tggaccttctccatctaccttgagtccgtggctatcctgccgcagctcttcatgatcagc 538
|||||||||||||||||||| ||||| ||||| |||||||| ||||| |||||| | |||
Sbjct: 49621370 tggaccttctccatctacctggagtcggtggccatcctgccacagctgttcatggtgagc 49621429
Query: 539 aagacgggggaggcggagaccatcaccacccactacctgttcttcctgggcctctaccgc 598
|||||||| ||||| ||||||||||||| ||||||| |||| |||||| ||||||||
Sbjct: 49621430 aagacgggcgaggcagagaccatcaccagccactacttgtttgcgctgggcgtctaccgc 49621489
Query: 599 gccttgtacctcgtcaactggatctggcgcttctacttcgagggcttcttcgacctcatc 658
| | || ||| |||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 49621490 acgctctatctcttcaactggatctggcgctaccacttcgagggcttcttcgacctcatc 49621549
Query: 659 gccgtggtggccggcgttgtccagaccatcctgtactgcgacttcttctacttgtacatc 718
||| | ||||| ||| | |||||||| |||| |||||||||||||||||| | ||||||
Sbjct: 49621550 gccattgtggcgggcctggtccagacggtcctctactgcgacttcttctacctctacatc 49621609
Query: 719 acaaaag 725
|| ||||
Sbjct: 49621610 accaaag 49621616
>Sscrofa_Chr05
|| Length = 111506441
Score = 87.7 bits (44), Expect = 3e-14
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 479 tggaccttctccatctaccttgagtccgtggctatcctgccgcagctcttcatgatcagc 538
||||| ||||| |||||||| || || ||||| |||||||| ||||||||||||||||||
Sbjct: 6788277 tggactttctctatctacctggaatcagtggccatcctgccccagctcttcatgatcagc 6788218
Query: 539 aagacgggggaggcggagaccatcaccacccactacctgttctt 582
||||| || ||||| ||||| || || || || |||||||||||
Sbjct: 6788217 aagacaggagaggctgagactattactactcattacctgttctt 6788174
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 79,309,125
Number of extensions: 524
Number of successful extensions: 524
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 11
Length of query: 2808
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2786
Effective length of database: 2,808,408,574
Effective search space: 7824226287164
Effective search space used: 7824226287164
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)