Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007782
(1093 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192974.1| cartilage-associated protein [Bos taurus]. 597 e-171
Alignment gi|XP_002696958.1| PREDICTED: cartilage associated protein [Bos... 597 e-171
Alignment gi|XP_001788933.1| PREDICTED: synaptonemal complex protein SC65... 226 3e-59
Alignment gi|XP_002696070.1| PREDICTED: synaptonemal complex protein SC65... 209 3e-54
Alignment gi|NP_001093815.1| prolyl 3-hydroxylase 2 [Bos taurus]. 171 1e-42
Alignment gi|NP_001096761.1| prolyl 3-hydroxylase 1 [Bos taurus]. 164 9e-41
>ref|NP_001192974.1| cartilage-associated protein [Bos taurus].
Length = 401
Score = 597 bits (1538), Expect = e-171
Identities = 286/294 (97%), Positives = 289/294 (98%)
Frame = +3
Query: 159 SGRAQYERYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEA 338
SGRAQYERYSFRSFPRDELMPLESAYRHALDQYS EHWAESVGYLEISLRLHRLLRDSEA
Sbjct: 23 SGRAQYERYSFRSFPRDELMPLESAYRHALDQYSSEHWAESVGYLEISLRLHRLLRDSEA 82
Query: 339 FCHRNCSAAPQPEPTAGLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADF 518
FCHRNCSAAPQPEPTAGLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADF
Sbjct: 83 FCHRNCSAAPQPEPTAGLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADF 142
Query: 519 QRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLE 698
QRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLE
Sbjct: 143 QRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLE 202
Query: 699 SKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLS 878
+KSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREI+DFKDFYLS
Sbjct: 203 TKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIRDFKDFYLS 262
Query: 879 IADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDWRTRPP 1040
IADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLND + P
Sbjct: 263 IADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDLKNAAP 316
Score = 49.7 bits (117), Expect = 5e-06
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 2/152 (1%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLR-LHRLLRDSEAFCHRNCSAAPQPEPTA 386
E ES + A+ Y+GE+W + +E++L + + A C + +
Sbjct: 202 ETKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIRDFKDFYL 261
Query: 387 GLA-RYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFK 563
+A Y E+ C +C++ L P + +A Y +LQFAY+K
Sbjct: 262 SIADHYVEV---------LECKIQCEENLTPVIGGYPVEKFVATM-----YHYLQFAYYK 307
Query: 564 ANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYK 659
N+L A A ++LL D++M++N+ YY+
Sbjct: 308 LNDLKNAAPCAVSYLLFDQSDKVMQQNLVYYQ 339
>ref|XP_002696958.1| PREDICTED: cartilage associated protein [Bos taurus].
Length = 401
Score = 597 bits (1538), Expect = e-171
Identities = 286/294 (97%), Positives = 289/294 (98%)
Frame = +3
Query: 159 SGRAQYERYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEA 338
SGRAQYERYSFRSFPRDELMPLESAYRHALDQYS EHWAESVGYLEISLRLHRLLRDSEA
Sbjct: 23 SGRAQYERYSFRSFPRDELMPLESAYRHALDQYSSEHWAESVGYLEISLRLHRLLRDSEA 82
Query: 339 FCHRNCSAAPQPEPTAGLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADF 518
FCHRNCSAAPQPEPTAGLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADF
Sbjct: 83 FCHRNCSAAPQPEPTAGLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADF 142
Query: 519 QRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLE 698
QRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLE
Sbjct: 143 QRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLE 202
Query: 699 SKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLS 878
+KSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREI+DFKDFYLS
Sbjct: 203 TKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIRDFKDFYLS 262
Query: 879 IADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDWRTRPP 1040
IADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLND + P
Sbjct: 263 IADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDLKNAAP 316
Score = 49.7 bits (117), Expect = 5e-06
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 2/152 (1%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLR-LHRLLRDSEAFCHRNCSAAPQPEPTA 386
E ES + A+ Y+GE+W + +E++L + + A C + +
Sbjct: 202 ETKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIRDFKDFYL 261
Query: 387 GLA-RYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFK 563
+A Y E+ C +C++ L P + +A Y +LQFAY+K
Sbjct: 262 SIADHYVEV---------LECKIQCEENLTPVIGGYPVEKFVATM-----YHYLQFAYYK 307
Query: 564 ANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYK 659
N+L A A ++LL D++M++N+ YY+
Sbjct: 308 LNDLKNAAPCAVSYLLFDQSDKVMQQNLVYYQ 339
>ref|XP_001788933.1| PREDICTED: synaptonemal complex protein SC65, partial [Bos taurus].
Length = 322
Score = 226 bits (576), Expect = 3e-59
Identities = 109/195 (55%), Positives = 142/195 (72%), Gaps = 1/195 (0%)
Frame = +3
Query: 447 LKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDD 626
L+RCK+ LPAF P R++L DFQ R PY++L +A FKAN L KA+AAA+TFL ++P
Sbjct: 1 LRRCKRSLPAFHVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKH 60
Query: 627 EMMKRNMAYYKSLPDAEDY-IKDLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFF 803
E+ + ++YY+ L DA D + DLE++ YE++F+RAV+ YN ++R DME AL ++
Sbjct: 61 ELTAKYLSYYRGLLDAADEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYL 120
Query: 804 KAFYECLAACEGSREIKDFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATM 983
F CLA CEG+ E DFKDFY +IAD + E L+CK+ CE NLTP +GGY VEKFVATM
Sbjct: 121 AVFARCLAGCEGAHEQVDFKDFYPAIADLFAESLQCKVDCEANLTPNVGGYFVEKFVATM 180
Query: 984 YHYLQFAYYKLNDWR 1028
YHYLQFAYYKLND R
Sbjct: 181 YHYLQFAYYKLNDVR 195
>ref|XP_002696070.1| PREDICTED: synaptonemal complex protein SC65-like, partial [Bos
taurus].
Length = 307
Score = 209 bits (533), Expect = 3e-54
Identities = 101/180 (56%), Positives = 132/180 (73%), Gaps = 1/180 (0%)
Frame = +3
Query: 492 PSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPD 671
P R++L DFQ R PY++L +A FKAN L KA+AAA+TFL ++P E+ + ++YY+ L D
Sbjct: 1 PPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLSYYRGLLD 60
Query: 672 AEDY-IKDLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSRE 848
A D + DLE++ YE++F+RAV+ YN ++R DME AL ++ F CLA CEG+ E
Sbjct: 61 AADEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEGAHE 120
Query: 849 IKDFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDWR 1028
DFKDFY +IAD + E L+CK+ CE NLTP +GGY VEKFVATMYHYLQFAYYKLND R
Sbjct: 121 QVDFKDFYPAIADLFAESLQCKVDCEANLTPNVGGYFVEKFVATMYHYLQFAYYKLNDVR 180
>ref|NP_001093815.1| prolyl 3-hydroxylase 2 [Bos taurus].
Length = 706
Score = 171 bits (433), Expect = 1e-42
Identities = 102/282 (36%), Positives = 153/282 (54%), Gaps = 11/282 (3%)
Frame = +3
Query: 213 LMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAGL 392
L P + Y + Y + +V LE +LR HR LR+ A C R+C AA +P G
Sbjct: 41 LQPFDLLYASGVAAYYSGDYELAVRDLEAALRSHRRLREIRARCARHC-AARRPLAPPGA 99
Query: 393 ARYPELRLFGGLLRRAHCLKRCKQ---GLPAFRQSQPSREVLADFQRREPYKFLQFAYFK 563
EL F LL RA C + C+ G PA R + S +V +DFQRR PY +LQ AY K
Sbjct: 100 GPGAELPFFRALLERARCYRSCQSQRLGGPASRH-RASEDVRSDFQRRVPYNYLQRAYIK 158
Query: 564 ANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAED-YIKDLESKSYESLFIRAVRA 740
N + KA+AAAHTF + +P+ M++N+ Y+++ ED + D E+K + + V+
Sbjct: 159 LNQMEKAVAAAHTFFMANPEHMEMQQNIENYRTMAGVEDLQLVDREAKPHLESYSAGVKH 218
Query: 741 YNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFK------DFYLSIADHYVEV 902
Y +++ I E AL ++F EC A CEG + ++++ Y +IADHY++V
Sbjct: 219 YEADDFELAIKYFEQALREYFNEDMECRALCEGPQRFEEYEYLGYKAGLYEAIADHYMQV 278
Query: 903 LECKIQCEENLTPVIGGY-PVEKFVATMYHYLQFAYYKLNDW 1025
L C+ +C L G P+E F+ Y YLQFAYY++ ++
Sbjct: 279 LVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEY 320
Score = 48.9 bits (115), Expect = 8e-06
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = +3
Query: 534 YKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYE 713
Y +LQFAY++ KA+ A +LL HPDDE + N+ YY+SL +E++
Sbjct: 307 YDYLQFAYYRVGEYIKALECAKAYLLLHPDDEDVLDNVDYYESLLGDSADPASIEAREDL 366
Query: 714 SLFIR 728
++F++
Sbjct: 367 AMFVK 371
>ref|NP_001096761.1| prolyl 3-hydroxylase 1 [Bos taurus].
Length = 736
Score = 164 bits (416), Expect(2) = 9e-41
Identities = 99/275 (36%), Positives = 146/275 (53%), Gaps = 18/275 (6%)
Frame = +3
Query: 255 YSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSA----------APQPEPTAGLARYP 404
Y+ WA V +E +LR LR C C+A P +G +
Sbjct: 46 YARGDWAGVVLSMERALRSRAALRALRLRCRTRCAADLPWEVDPDSPPSLAQASGASALH 105
Query: 405 ELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKA 584
+LR FGGLLRRA CL+RC A S+ E+ +F++R PY +LQ AYFK N L KA
Sbjct: 106 DLRFFGGLLRRAACLRRCLGPSTAHSLSE---ELELEFRKRSPYNYLQVAYFKINKLEKA 162
Query: 585 IAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDY-IKDLESKSYESLFIRAVRAYNGENWR 761
+AAAHTF + +P+ M++N+ YY+++ ++ KDLE+K + F VR Y+ E +
Sbjct: 163 VAAAHTFFVGNPEHMEMRQNLDYYQTMSGVKEADFKDLEAKPHMHEFRLGVRLYSEEQPQ 222
Query: 762 TCITDMELALPDFFKAFYECLAACEGSREIKDFK------DFYLSIADHYVEVLECKIQC 923
+ +E AL ++F A EC A CEG + + D + +I DHY++VL CK C
Sbjct: 223 EAVPHLEAALREYFVAAEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLSCKQNC 282
Query: 924 EENL-TPVIGGYPVEKFVATMYHYLQFAYYKLNDW 1025
L + P E F+ + Y+YLQFAYY + ++
Sbjct: 283 VTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNY 317
Score = 21.6 bits (44), Expect(2) = 9e-41
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 1031 AAPCAVSYLLFDHNDRSCSR 1090
A CA +YLLF ND S+
Sbjct: 320 AIECAKTYLLFFPNDEVMSQ 339
Score = 62.0 bits (149), Expect = 9e-10
Identities = 47/152 (30%), Positives = 68/152 (44%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAG 389
E P +R + YS E E+V +LE +LR + + + C C P
Sbjct: 201 EAKPHMHEFRLGVRLYSEEQPQEAVPHLEAALREYFVAAEE---CRALCEG-PYDYDGYN 256
Query: 390 LARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKAN 569
Y LF + + CKQ S PSRE + Y +LQFAY+
Sbjct: 257 YLEY-NADLFQAITDHYIQVLSCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIG 315
Query: 570 NLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSL 665
N +AI A T+LL P+DE+M +N+AYY ++
Sbjct: 316 NYTQAIECAKTYLLFFPNDEVMSQNLAYYTAM 347
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,759,253
Number of extensions: 870447
Number of successful extensions: 3648
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3574
Number of HSP's successfully gapped: 11
Length of query: 364
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,240,222
Effective search space: 3702457720
Effective search space used: 3702457720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007782
(1093 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542696.2| PREDICTED: similar to Cartilage-associated prot... 570 e-163
Alignment gi|XP_849608.1| PREDICTED: similar to Nucleolar autoantigen No5... 329 3e-90
Alignment gi|XP_535843.2| PREDICTED: similar to leprecan-like 1 isoform 1... 173 2e-43
Alignment gi|XP_848570.1| PREDICTED: similar to leprecan 1 [Canis familia... 156 3e-38
Alignment gi|XP_853513.1| PREDICTED: similar to leprecan-like 2 isoform 2... 71 2e-12
Alignment gi|XP_543846.2| PREDICTED: similar to leprecan-like 2 isoform 1... 59 6e-09
>ref|XP_542696.2| PREDICTED: similar to Cartilage-associated protein precursor [Canis
familiaris].
Length = 412
Score = 570 bits (1470), Expect = e-163
Identities = 280/306 (91%), Positives = 284/306 (92%), Gaps = 11/306 (3%)
Frame = +3
Query: 156 RSGRAQYERYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSE 335
R GRAQYERYSFRSFPRDELMPLESAYRHALDQY GE WAESVGYLEISLRLHRLLRDSE
Sbjct: 22 RGGRAQYERYSFRSFPRDELMPLESAYRHALDQYGGERWAESVGYLEISLRLHRLLRDSE 81
Query: 336 AFCHRNCSAAP--------QPEPT---AGLARYPELRLFGGLLRRAHCLKRCKQGLPAFR 482
AFCHRNCSA P QPEP AGLARYPELRLF GLLRRAHCLKRCKQGLPAFR
Sbjct: 82 AFCHRNCSAVPPAEPQPEPQPEPEPEPAGLARYPELRLFRGLLRRAHCLKRCKQGLPAFR 141
Query: 483 QSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKS 662
QSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKS
Sbjct: 142 QSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKS 201
Query: 663 LPDAEDYIKDLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGS 842
LPDAEDYIKDLE+KSYESLFIRAVRAYNGENWRT +TDMELALPDFFKAFYECLAACEGS
Sbjct: 202 LPDAEDYIKDLETKSYESLFIRAVRAYNGENWRTSVTDMELALPDFFKAFYECLAACEGS 261
Query: 843 REIKDFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLND 1022
REIKDFKDFYLSIADHYVEVLECKIQCE+NLTPVIGGYPVEKFVATMYHYLQFAYYKLND
Sbjct: 262 REIKDFKDFYLSIADHYVEVLECKIQCEKNLTPVIGGYPVEKFVATMYHYLQFAYYKLND 321
Query: 1023 WRTRPP 1040
+ P
Sbjct: 322 LKNAAP 327
Score = 53.1 bits (126), Expect = 4e-07
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 4/203 (1%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLR-LHRLLRDSEAFCHRNCSAAPQPEPTA 386
E ES + A+ Y+GE+W SV +E++L + + A C + +
Sbjct: 213 ETKSYESLFIRAVRAYNGENWRTSVTDMELALPDFFKAFYECLAACEGSREIKDFKDFYL 272
Query: 387 GLA-RYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFK 563
+A Y E+ C +C++ L P + +A Y +LQFAY+K
Sbjct: 273 SIADHYVEV---------LECKIQCEKNLTPVIGGYPVEKFVATM-----YHYLQFAYYK 318
Query: 564 ANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYESLFIR--AVR 737
N+L A A ++LL +D++M++N+ YY+ Y +D S S E R AV+
Sbjct: 319 LNDLKNAAPCAVSYLLFDHNDKVMQQNLVYYQ-------YHRDKWSLSDEHFQPRPEAVQ 371
Query: 738 AYNGENWRTCITDMELALPDFFK 806
+N +T ++ L DF K
Sbjct: 372 FFN-------VTTLQKELYDFAK 387
>ref|XP_849608.1| PREDICTED: similar to Nucleolar autoantigen No55 [Canis familiaris].
Length = 443
Score = 329 bits (843), Expect = 3e-90
Identities = 167/302 (55%), Positives = 211/302 (69%), Gaps = 12/302 (3%)
Frame = +3
Query: 159 SGRAQYERYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEA 338
S AQYE+YSFR FP ++LMPL +AY HAL+QY GE W ES YLE +LRLHRLLRDSEA
Sbjct: 15 SAAAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEA 74
Query: 339 FCHRNCSA-----------APQPEPTAGLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQ 485
FCH NCS AP P+ G EL+LFG +L RA CL+RCK+ LPAF+
Sbjct: 75 FCHANCSGPAPPAASPSGPAPGPDGGRGEEWARELQLFGHVLERAACLRRCKRTLPAFQV 134
Query: 486 SQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSL 665
P R++L DFQ R PY++L +A FKAN L KA AAA+TFL ++P E+ + ++ + L
Sbjct: 135 PYPPRQLLRDFQSRLPYQYLHYALFKANRLEKAAAAAYTFLQRNPKHELTAKYLSNCRGL 194
Query: 666 PDA-EDYIKDLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGS 842
DA E+ + DLE++ YE++F+RAV+ YN ++R DME AL ++ F CLA CEG+
Sbjct: 195 LDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAIFARCLAGCEGA 254
Query: 843 REIKDFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLND 1022
E DFKDFY +IAD + E L+CK+ CE NLTP +GG+ VEKFVATMYHYLQFAYYKLND
Sbjct: 255 HEQVDFKDFYPAIADLFAESLQCKVDCEVNLTPNVGGFFVEKFVATMYHYLQFAYYKLND 314
Query: 1023 WR 1028
R
Sbjct: 315 VR 316
>ref|XP_535843.2| PREDICTED: similar to leprecan-like 1 isoform 1 [Canis familiaris].
Length = 709
Score = 173 bits (439), Expect = 2e-43
Identities = 105/283 (37%), Positives = 155/283 (54%), Gaps = 12/283 (4%)
Frame = +3
Query: 213 LMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSA-APQPEPTAG 389
L P + Y + Y E + +V LE +LR HR LR+ A C R C+A +P P AG
Sbjct: 44 LQPFDLLYASGVAAYYSEDYERAVRDLEAALRSHRRLREVRALCARRCAARSPLAPPGAG 103
Query: 390 LARYPELRLFGGLLRRAHCLKRCKQ---GLPAFRQSQPSREVLADFQRREPYKFLQFAYF 560
A EL F LL RA C +RC+ G PA R + S +V +DFQRR PY +LQ AY
Sbjct: 104 PAA--ELPFFRALLERARCARRCQAERLGGPASRH-RVSDDVRSDFQRRVPYNYLQRAYI 160
Query: 561 KANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAED-YIKDLESKSYESLFIRAVR 737
K N L KA+ AAHTF + +P+ M++N+ Y+++ E + D E+K + + V+
Sbjct: 161 KLNQLEKAVEAAHTFFMANPEHMEMQQNIENYRTMAGVEVLQLVDREAKPHLESYSAGVK 220
Query: 738 AYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFK------DFYLSIADHYVE 899
Y +++ I E AL ++F EC A CEG + ++++ Y +IADHY++
Sbjct: 221 YYEADDFELAIKYFEQALREYFNEDMECRALCEGPQRFEEYEYLGYKAGLYEAIADHYMQ 280
Query: 900 VLECKIQCEENLTPVIGGY-PVEKFVATMYHYLQFAYYKLNDW 1025
VL C+ +C L G P+E F+ Y YLQFAYY++ ++
Sbjct: 281 VLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEY 323
Score = 51.2 bits (121), Expect = 2e-06
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = +3
Query: 534 YKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYE 713
Y +LQFAY++ KA+ A +LL HPDDE + N+ YY+ L D +E++
Sbjct: 310 YDYLQFAYYRVGEYVKALECAKAYLLLHPDDEDVLDNVDYYEGLLDDSSDPASIEAREDL 369
Query: 714 SLFIR 728
++F++
Sbjct: 370 AMFVK 374
>ref|XP_848570.1| PREDICTED: similar to leprecan 1 [Canis familiaris].
Length = 848
Score = 156 bits (395), Expect = 3e-38
Identities = 101/307 (32%), Positives = 151/307 (49%), Gaps = 35/307 (11%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAA-------- 365
++ P + + Y+ WA V +E +LR LR C C+A
Sbjct: 35 DVAPPDLLFAEGTAAYARGDWAGVVLSMERALRSRAALRALRLRCRTRCAAELPWELDPA 94
Query: 366 --PQPEPTAGLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYK 539
P P P +G A +LR FG LL RA CL+RC G PA S E+ +F++R PY
Sbjct: 95 PPPSPSPASGAAALRDLRFFGALLHRAACLRRCL-GPPAAHAL--SEELELEFRKRSPYN 151
Query: 540 FLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDY-IKDLESKSYES 716
+LQ AYFK N L KA+AAAHTF + +P+ M++N+ YY+++ ++ KDLE+K +
Sbjct: 152 YLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLEAKPHMH 211
Query: 717 LFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFK------DFYLS 878
F VR Y+ E + +E AL ++ A EC A CEG + + D + +
Sbjct: 212 EFRLGVRLYSEEQPHEAVAHLEAALREYVVADTECRALCEGPYDYDGYNYLEYNADLFRA 271
Query: 879 -----------------IADHYVEVLECKIQCEENL-TPVIGGYPVEKFVATMYHYLQFA 1004
++DHY++VL CK C L + P E F+ + Y+YLQFA
Sbjct: 272 SIQILKLHLMVIPRLWFLSDHYIQVLSCKQNCVTELASHPSREKPFEDFLPSHYNYLQFA 331
Query: 1005 YYKLNDW 1025
YY + ++
Sbjct: 332 YYNIGNY 338
Score = 58.5 bits (140), Expect = 1e-08
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 15/171 (8%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAG 389
E P +R + YS E E+V +LE +LR + ++ D+E C C +
Sbjct: 205 EAKPHMHEFRLGVRLYSEEQPHEAVAHLEAALREY-VVADTE--CRALCEGPYDYDGYNY 261
Query: 390 LARYPELRLFGGLLRRAHCLK---------------RCKQGLPAFRQSQPSREVLADFQR 524
L +L + + H + CKQ S PSRE +
Sbjct: 262 LEYNADLFRASIQILKLHLMVIPRLWFLSDHYIQVLSCKQNCVTELASHPSREKPFEDFL 321
Query: 525 REPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAE 677
Y +LQFAY+ N +AI A T+LL P+DE+M +N+AYY ++ E
Sbjct: 322 PSHYNYLQFAYYNIGNYTQAIECAKTYLLFFPNDEVMNQNLAYYTAMVGEE 372
>ref|XP_853513.1| PREDICTED: similar to leprecan-like 2 isoform 2 [Canis familiaris].
Length = 744
Score = 71.2 bits (173), Expect = 2e-12
Identities = 71/301 (23%), Positives = 116/301 (38%), Gaps = 38/301 (12%)
Frame = +3
Query: 234 YRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAGLARYP--- 404
Y L Y+ WA +V L +LR L + C C+A EP A L P
Sbjct: 41 YADGLRAYAAGAWAPAVALLREALRSRAALGRARRDCGALCAA----EPGAALPAVPLDA 96
Query: 405 --------------ELRLFGGLLRRAHCLKRC---KQGLPAFRQSQPSREVLADFQRREP 533
E L LRRA CL C + GL + + + EP
Sbjct: 97 PGRDSGPGRAQGAWERLLLRAELRRAECLTHCGARRLGLGGAARLPLGSHLRGRGKAEEP 156
Query: 534 Y-------KFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAE-DYIK 689
++ +Y L A AAAHTF + +P M+ +MA Y+ + +
Sbjct: 157 EAWHLAGGQWTLRSYQSLKKLDLAAAAAHTFFVANPTHLQMREDMAKYRRMSRVRPQSFR 216
Query: 690 DLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFKD- 866
DLE+ + + + + + + +E AL + C A CEG E + ++
Sbjct: 217 DLETPPHWAAYDEGLELLGRQEAGLALPRLEEALQEILAQMESCRAGCEGPEEQQSEEEE 276
Query: 867 --------FYLSIADHYVEVLECKIQCEENLTPVIG-GYPVEKFVATMYHYLQFAYYKLN 1019
Y IA H++ VL+C+ +C + G +PV F+ ++ L A+ ++
Sbjct: 277 EGAGSQGGLYEIIAGHWIRVLQCRQRCVGDTATRPGRSFPVPDFLPSLLRQLHKAHAQVG 336
Query: 1020 D 1022
+
Sbjct: 337 N 337
>ref|XP_543846.2| PREDICTED: similar to leprecan-like 2 isoform 1 [Canis familiaris].
Length = 960
Score = 59.3 bits (142), Expect = 6e-09
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 11/167 (6%)
Frame = +3
Query: 555 YFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAE-DYIKDLESKSYESLFIRA 731
Y + L A AAAHTF + +P M+ +MA Y+ + +DLE+ + + +
Sbjct: 387 YLQLKKLDLAAAAAHTFFVANPTHLQMREDMAKYRRMSRVRPQSFRDLETPPHWAAYDEG 446
Query: 732 VRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFKD---------FYLSIA 884
+ + + +E AL + C A CEG E + ++ Y IA
Sbjct: 447 LELLGRQEAGLALPRLEEALQEILAQMESCRAGCEGPEEQQSEEEEEGAGSQGGLYEIIA 506
Query: 885 DHYVEVLECKIQCEENLTPVIG-GYPVEKFVATMYHYLQFAYYKLND 1022
H++ VL+C+ +C + G +PV F+ ++ L A+ ++ +
Sbjct: 507 GHWIRVLQCRQRCVGDTATRPGRSFPVPDFLPSLLRQLHKAHAQVGN 553
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,115,552
Number of extensions: 859857
Number of successful extensions: 4400
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4206
Number of HSP's successfully gapped: 9
Length of query: 364
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 260
Effective length of database: 15,407,560
Effective search space: 4005965600
Effective search space used: 4005965600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007782
(1093 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131464.1| PREDICTED: synaptonemal complex protein SC65... 337 7e-93
Alignment gi|XP_003360995.1| PREDICTED: cartilage-associated protein-like... 223 2e-58
Alignment gi|XP_003356546.1| PREDICTED: prolyl 3-hydroxylase 1 [Sus scrof... 71 3e-13
Alignment gi|XP_003132635.2| PREDICTED: prolyl 3-hydroxylase 2 [Sus scrof... 49 4e-06
>ref|XP_003131464.1| PREDICTED: synaptonemal complex protein SC65 [Sus scrofa].
Length = 444
Score = 337 bits (864), Expect = 7e-93
Identities = 172/303 (56%), Positives = 213/303 (70%), Gaps = 13/303 (4%)
Frame = +3
Query: 159 SGRAQYERYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEA 338
S AQYE+YSFR FP ++LMPL +AY HAL+QY GE W ES YLE +LRLHRLLRDSEA
Sbjct: 15 SAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEA 74
Query: 339 FCHRNCSA-APQPEPTAGLARYP-----------ELRLFGGLLRRAHCLKRCKQGLPAFR 482
FCH NCS AP T G A EL+LFG +L RA CL+RCK+ LPAF+
Sbjct: 75 FCHANCSGPAPPSAATPGPAPPDPDGGHEDEWARELQLFGHVLERAACLRRCKRSLPAFQ 134
Query: 483 QSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKS 662
P R++L DFQ R PY++L +A FKAN L KA+AAA+TFL ++P E+ + + YY+
Sbjct: 135 VPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRG 194
Query: 663 LPDA-EDYIKDLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEG 839
L DA E+ + DLE++ YE++F+RAV+ YN ++R DME AL ++ F CLA CEG
Sbjct: 195 LLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEG 254
Query: 840 SREIKDFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLN 1019
+ E DFKDFY SIAD + E L+CK+ CE NLTP +GGY VEKFVATMYHYLQFAYYKLN
Sbjct: 255 AHEQVDFKDFYPSIADLFAESLQCKVDCETNLTPNVGGYFVEKFVATMYHYLQFAYYKLN 314
Query: 1020 DWR 1028
D R
Sbjct: 315 DVR 317
>ref|XP_003360995.1| PREDICTED: cartilage-associated protein-like, partial [Sus scrofa].
Length = 108
Score = 223 bits (567), Expect = 2e-58
Identities = 107/107 (100%), Positives = 107/107 (100%)
Frame = +3
Query: 564 ANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYESLFIRAVRAY 743
ANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYESLFIRAVRAY
Sbjct: 1 ANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYESLFIRAVRAY 60
Query: 744 NGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLSIA 884
NGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLSIA
Sbjct: 61 NGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLSIA 107
>ref|XP_003356546.1| PREDICTED: prolyl 3-hydroxylase 1 [Sus scrofa].
Length = 565
Score = 71.2 bits (173), Expect(2) = 3e-13
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Frame = +3
Query: 720 FIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFK------DFYLSI 881
F VR Y+ E + + +E AL ++F A EC A CEG + + D + +I
Sbjct: 38 FRLGVRLYSEEQPQEAVPHLEAALQEYFLADEECRALCEGPYDYDGYNYLEYNADLFQAI 97
Query: 882 ADHYVEVLECKIQCEENLTPVIG-GYPVEKFVATMYHYLQFAYYKLNDW 1025
DHY++VL CK C L G P E F+ + Y+YLQFAYY + ++
Sbjct: 98 TDHYIQVLSCKQSCVTELASHPGREKPFEDFLPSHYNYLQFAYYNIGNY 146
Score = 21.6 bits (44), Expect(2) = 3e-13
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 1031 AAPCAVSYLLFDHNDRSCSR 1090
A CA +YLLF ND S+
Sbjct: 149 AIECAKTYLLFFPNDEVMSQ 168
Score = 60.1 bits (144), Expect = 2e-09
Identities = 50/154 (32%), Positives = 70/154 (45%), Gaps = 2/154 (1%)
Frame = +3
Query: 210 ELMPLESA--YRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPT 383
EL LE +R + YS E E+V +LE +L+ + L D E C C P
Sbjct: 28 ELAVLEGRHEFRLGVRLYSEEQPQEAVPHLEAALQEY-FLADEE--CRALCEG-PYDYDG 83
Query: 384 AGLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFK 563
Y LF + + CKQ S P RE + Y +LQFAY+
Sbjct: 84 YNYLEY-NADLFQAITDHYIQVLSCKQSCVTELASHPGREKPFEDFLPSHYNYLQFAYYN 142
Query: 564 ANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSL 665
N +AI A T+LL P+DE+M +N+AYY ++
Sbjct: 143 IGNYTQAIECAKTYLLFFPNDEVMSQNLAYYTAM 176
>ref|XP_003132635.2| PREDICTED: prolyl 3-hydroxylase 2 [Sus scrofa].
Length = 587
Score = 49.3 bits (116), Expect = 4e-06
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = +3
Query: 534 YKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYE 713
Y +LQFAY++ KA+ A +LL HPDDE + N+ YY+S+ D +E++
Sbjct: 188 YDYLQFAYYRVGEYVKALECAKAYLLIHPDDEDVLDNVDYYESILDDSIDPGSIEAREDL 247
Query: 714 SLFIR 728
+F++
Sbjct: 248 MMFVK 252
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,719,096
Number of extensions: 602575
Number of successful extensions: 2258
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2244
Number of HSP's successfully gapped: 6
Length of query: 364
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,854,232
Effective search space: 2337517248
Effective search space used: 2337517248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007782
(1093 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064306.2| cartilage-associated protein precursor [Mus mus... 539 e-153
Alignment gi|NP_789800.1| synaptonemal complex protein SC65 [Mus musculus]. 337 1e-92
Alignment gi|NP_775555.1| prolyl 3-hydroxylase 2 precursor [Mus musculus]. 166 3e-41
Alignment gi|NP_062757.2| prolyl 3-hydroxylase 1 isoform 2 [Mus musculus]. 160 2e-39
Alignment gi|NP_062756.2| prolyl 3-hydroxylase 1 isoform 1 [Mus musculus]. 160 2e-39
Alignment gi|NP_038562.2| prolyl 3-hydroxylase 3 precursor [Mus musculus]. 103 2e-22
Alignment gi|NP_001035874.1| prolyl 3-hydroxylase 1 isoform 3 [Mus muscul... 84 2e-16
>ref|NP_064306.2| cartilage-associated protein precursor [Mus musculus].
Length = 400
Score = 539 bits (1389), Expect = e-153
Identities = 262/294 (89%), Positives = 274/294 (93%), Gaps = 1/294 (0%)
Frame = +3
Query: 162 GRAQYERYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAF 341
GR QYERYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLE+SLRLHRLLRDSEAF
Sbjct: 23 GRGQYERYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEVSLRLHRLLRDSEAF 82
Query: 342 CHRNCSAA-PQPEPTAGLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADF 518
CHRNCSAA P P P AG A + ELRLFG +LRRA CLKRCKQGLPAFRQSQPSR VLADF
Sbjct: 83 CHRNCSAATPAPAP-AGPASHAELRLFGSVLRRAQCLKRCKQGLPAFRQSQPSRSVLADF 141
Query: 519 QRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLE 698
Q+REPYKFLQFAYFKAN+LPKAIAAAHT+LLKHPDDEMMKRNM YYKSLP AED+IKDLE
Sbjct: 142 QQREPYKFLQFAYFKANDLPKAIAAAHTYLLKHPDDEMMKRNMEYYKSLPGAEDHIKDLE 201
Query: 699 SKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLS 878
+KSYESLF+RAVRAYNGENWRT I+DMELALPDF KAFYECLAACEGSREIKDFKDFYLS
Sbjct: 202 TKSYESLFVRAVRAYNGENWRTSISDMELALPDFLKAFYECLAACEGSREIKDFKDFYLS 261
Query: 879 IADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDWRTRPP 1040
IADHYVEVLECKI+CEE LTPVIGGYPVEKFVATMYHYLQFAYYKLND + P
Sbjct: 262 IADHYVEVLECKIRCEETLTPVIGGYPVEKFVATMYHYLQFAYYKLNDLKNAAP 315
Score = 52.4 bits (124), Expect = 6e-07
Identities = 41/150 (27%), Positives = 68/150 (45%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAG 389
E ES + A+ Y+GE+W S+ +E++L +AF C AA +
Sbjct: 201 ETKSYESLFVRAVRAYNGENWRTSISDMELALPDFL-----KAFYE--CLAACEGSREIK 253
Query: 390 LARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKAN 569
+ L + + C RC++ L P + +A Y +LQFAY+K N
Sbjct: 254 DFKDFYLSIADHYVEVLECKIRCEETLTPVIGGYPVEKFVATM-----YHYLQFAYYKLN 308
Query: 570 NLPKAIAAAHTFLLKHPDDEMMKRNMAYYK 659
+L A A ++LL D +M++N+ YY+
Sbjct: 309 DLKNAAPCAVSYLLFDQSDRVMQQNLVYYQ 338
>ref|NP_789800.1| synaptonemal complex protein SC65 [Mus musculus].
Length = 443
Score = 337 bits (864), Expect = 1e-92
Identities = 169/304 (55%), Positives = 217/304 (71%), Gaps = 14/304 (4%)
Frame = +3
Query: 159 SGRAQYERYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEA 338
S AQYE+YSFR FP ++LMPL +AY HAL+QY GE W ES YLE +LRLHRLLRDSEA
Sbjct: 15 SAGAQYEKYSFRGFPPEDLMPLATAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEA 74
Query: 339 FCHRNCS--AAPQPEPTAG-----------LARYPELRLFGGLLRRAHCLKRCKQGLPAF 479
FCH NCS A QP P +G AR ELRLFG +L RA CL+RCK+ LPAF
Sbjct: 75 FCHANCSGPATSQPRPASGPDGDHDGDGEDWAR--ELRLFGHVLERAACLRRCKKTLPAF 132
Query: 480 RQSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYK 659
+ P R++L DFQ R PY++L +A+FKAN L KA+AAA+TFL ++P E+ + + YY+
Sbjct: 133 QVPYPPRQLLRDFQSRLPYQYLHYAHFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYR 192
Query: 660 SLPD-AEDYIKDLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACE 836
+ D ++ + DLE++ YE++F+RAV+ YN ++R+ DME AL ++ F CLA CE
Sbjct: 193 GMLDIGDESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALAEYMTVFARCLAGCE 252
Query: 837 GSREIKDFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKL 1016
G+ E DFKDFY +IAD + E L+CK+ CE NLTP +GG+ V+KFVATMYHYLQFAYYKL
Sbjct: 253 GAHEQVDFKDFYPAIADLFAESLQCKVDCETNLTPNVGGFFVDKFVATMYHYLQFAYYKL 312
Query: 1017 NDWR 1028
ND R
Sbjct: 313 NDVR 316
>ref|NP_775555.1| prolyl 3-hydroxylase 2 precursor [Mus musculus].
Length = 703
Score = 166 bits (420), Expect = 3e-41
Identities = 100/284 (35%), Positives = 150/284 (52%), Gaps = 10/284 (3%)
Frame = +3
Query: 204 RDELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPT 383
R L P + Y + Y + +V LE +L HR LRD C R+C AA +P
Sbjct: 36 RGPLQPFDLLYASGVAAYYSGDYERAVRDLEAALSSHRRLRDIRTRCARHC-AARRPLAP 94
Query: 384 AGLARYPELRLFGGLLRRAHCLKRCKQ---GLPAFRQSQPSREVLADFQRREPYKFLQFA 554
G EL F +L RA C + C+ G PA R + S +V +DFQRR PY +LQ A
Sbjct: 95 PGAGPGAELPFFRAVLERARCSRSCQSQRLGGPASRH-RVSEDVRSDFQRRVPYNYLQRA 153
Query: 555 YFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYESLFIRAV 734
Y K N L KA+ AAHTF + +P+ M++++ YK+ E + D E+K + + V
Sbjct: 154 YIKLNQLEKAMEAAHTFFMANPEHMEMQQDLEDYKATARVEAPLLDREAKPHLESYNAGV 213
Query: 735 RAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFK------DFYLSIADHYV 896
+ Y +++ + I E AL ++F EC A CEG + ++++ Y +IADHY+
Sbjct: 214 KHYEADDFESAIKYFEQALREYFNEDMECRALCEGPQRFEEYEYLGYKGGLYEAIADHYM 273
Query: 897 EVLECKIQCEENLTPVIGGY-PVEKFVATMYHYLQFAYYKLNDW 1025
+VL C+ +C L G P+E F+ Y YLQFAYY++ ++
Sbjct: 274 QVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEY 317
Score = 49.3 bits (116), Expect = 5e-06
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 10/183 (5%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAG 389
E P +Y + Y + + ++ Y E +LR + + + C C + E
Sbjct: 201 EAKPHLESYNAGVKHYEADDFESAIKYFEQALREYF---NEDMECRALCEGPQRFE---- 253
Query: 390 LARYPELRLFGGL--------LRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREP--YK 539
Y L GGL ++ C C + L ++P R L+ + P Y
Sbjct: 254 --EYEYLGYKGGLYEAIADHYMQVLVCQHECVRELA----TRPGR--LSPIENFLPLHYD 305
Query: 540 FLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYESL 719
+LQFAY++ KA+ A +L+ HPD+E + N+ +Y+SL D +E++ +
Sbjct: 306 YLQFAYYRVGEYVKALECAKAYLMFHPDNEDVLDNVDFYESLLDDSTDPASIEAREDLTA 365
Query: 720 FIR 728
F++
Sbjct: 366 FVK 368
>ref|NP_062757.2| prolyl 3-hydroxylase 1 isoform 2 [Mus musculus].
Length = 739
Score = 160 bits (404), Expect = 2e-39
Identities = 105/302 (34%), Positives = 155/302 (51%), Gaps = 20/302 (6%)
Frame = +3
Query: 180 RYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCS 359
R + S P ++ + Y YS W V +E +LR LR C C+
Sbjct: 22 RVAAESEPGWDVAAPDLLYAEGTAAYSRGDWPGVVLNMERALRSRAALRALRLRCRTRCA 81
Query: 360 A----APQ----PEPTA----GLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSRE 503
AP P+P+ G A +LR FG +LRRA CL+RC G P+ S E
Sbjct: 82 TELPWAPDLDLGPDPSLSQDPGAAALHDLRFFGAVLRRAACLRRCL-GPPSAHLL--SEE 138
Query: 504 VLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDY 683
+ +F +R PY +LQ AYFK N L KA+AAAHTF + +P+ M++N+ YY+++ ++
Sbjct: 139 LDLEFNKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMRQNLDYYQTMSGVKEA 198
Query: 684 -IKDLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDF 860
+DLE+K + F VR Y+ E + + +E AL ++F A EC A CEG + +
Sbjct: 199 DFRDLEAKPHMHEFRLGVRLYSEEKPQEAVPHLEAALQEYFVADEECRALCEGPYDYDGY 258
Query: 861 K------DFYLSIADHYVEVLECKIQCEENL-TPVIGGYPVEKFVATMYHYLQFAYYKLN 1019
D + +I DHYV+VL CK C L + P E F+ + Y+YLQFAYY +
Sbjct: 259 NYLDYSADLFQAITDHYVQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIG 318
Query: 1020 DW 1025
++
Sbjct: 319 NY 320
Score = 60.8 bits (146), Expect = 2e-09
Identities = 49/157 (31%), Positives = 71/157 (45%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAG 389
E P +R + YS E E+V +LE +L+ + + D E C C P
Sbjct: 204 EAKPHMHEFRLGVRLYSEEKPQEAVPHLEAALQEY-FVADEE--CRALCEG-PYDYDGYN 259
Query: 390 LARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKAN 569
Y LF + + CKQ S PSRE + Y +LQFAY+
Sbjct: 260 YLDY-SADLFQAITDHYVQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIG 318
Query: 570 NLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAED 680
N +AI A T+LL P+DE+M +N+AYY ++ E+
Sbjct: 319 NYTQAIECAKTYLLFFPNDEVMHQNLAYYTAMLGEEE 355
>ref|NP_062756.2| prolyl 3-hydroxylase 1 isoform 1 [Mus musculus].
Length = 748
Score = 160 bits (404), Expect = 2e-39
Identities = 105/302 (34%), Positives = 155/302 (51%), Gaps = 20/302 (6%)
Frame = +3
Query: 180 RYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCS 359
R + S P ++ + Y YS W V +E +LR LR C C+
Sbjct: 22 RVAAESEPGWDVAAPDLLYAEGTAAYSRGDWPGVVLNMERALRSRAALRALRLRCRTRCA 81
Query: 360 A----APQ----PEPTA----GLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSRE 503
AP P+P+ G A +LR FG +LRRA CL+RC G P+ S E
Sbjct: 82 TELPWAPDLDLGPDPSLSQDPGAAALHDLRFFGAVLRRAACLRRCL-GPPSAHLL--SEE 138
Query: 504 VLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDY 683
+ +F +R PY +LQ AYFK N L KA+AAAHTF + +P+ M++N+ YY+++ ++
Sbjct: 139 LDLEFNKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMRQNLDYYQTMSGVKEA 198
Query: 684 -IKDLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDF 860
+DLE+K + F VR Y+ E + + +E AL ++F A EC A CEG + +
Sbjct: 199 DFRDLEAKPHMHEFRLGVRLYSEEKPQEAVPHLEAALQEYFVADEECRALCEGPYDYDGY 258
Query: 861 K------DFYLSIADHYVEVLECKIQCEENL-TPVIGGYPVEKFVATMYHYLQFAYYKLN 1019
D + +I DHYV+VL CK C L + P E F+ + Y+YLQFAYY +
Sbjct: 259 NYLDYSADLFQAITDHYVQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIG 318
Query: 1020 DW 1025
++
Sbjct: 319 NY 320
Score = 60.8 bits (146), Expect = 2e-09
Identities = 49/157 (31%), Positives = 71/157 (45%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAG 389
E P +R + YS E E+V +LE +L+ + + D E C C P
Sbjct: 204 EAKPHMHEFRLGVRLYSEEKPQEAVPHLEAALQEY-FVADEE--CRALCEG-PYDYDGYN 259
Query: 390 LARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKAN 569
Y LF + + CKQ S PSRE + Y +LQFAY+
Sbjct: 260 YLDY-SADLFQAITDHYVQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIG 318
Query: 570 NLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAED 680
N +AI A T+LL P+DE+M +N+AYY ++ E+
Sbjct: 319 NYTQAIECAKTYLLFFPNDEVMHQNLAYYTAMLGEEE 355
>ref|NP_038562.2| prolyl 3-hydroxylase 3 precursor [Mus musculus].
Length = 732
Score = 103 bits (258), Expect = 2e-22
Identities = 80/289 (27%), Positives = 123/289 (42%), Gaps = 26/289 (8%)
Frame = +3
Query: 234 YRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAP----------QPEPT 383
Y L YS WA +V L +LR L + C +C+A P P P
Sbjct: 43 YADGLRAYSAGAWAPAVALLREALRSRAALGRARQECGASCAAEPGAALPSQLLGAPHPV 102
Query: 384 AGLARYPELRLFGGLLRRAHCLKRCKQ------GLPAFRQSQPSREVLADFQRREPYKFL 545
+G + L L LRRA CL +C G R R+ F+RREPY +L
Sbjct: 103 SGPGVWEPL-LLRATLRRAECLTQCAVRRLGPGGAARLRVGSALRDA---FRRREPYNYL 158
Query: 546 QFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAE-DYIKDLESKSYESLF 722
Q AY++ L A +AAHTF + +P M+ +MA Y+ + +DL + Y + +
Sbjct: 159 QRAYYQLKKLDLAASAAHTFFVANPTHLQMREDMAKYRRMSAIRPQSFRDLVTPLYWAAY 218
Query: 723 IRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFKD--------FYLS 878
+ + +E AL C AACEG E + ++ Y +
Sbjct: 219 DTGLELLEQREAALALPQLEEALQGSLAHMESCRAACEGPEEHQGAEEEGEGSQGGLYEA 278
Query: 879 IADHYVEVLECKIQCEENLTPVIG-GYPVEKFVATMYHYLQFAYYKLND 1022
IA H++ VL+C+ C + G +PV+ F+ + L AY ++ +
Sbjct: 279 IAGHWIRVLQCRQHCVADTATRPGRSFPVQDFLLSQLRRLHEAYAQVGN 327
>ref|NP_001035874.1| prolyl 3-hydroxylase 1 isoform 3 [Mus musculus].
Length = 560
Score = 83.6 bits (205), Expect(2) = 2e-16
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 8/139 (5%)
Frame = +3
Query: 633 MKRNMAYYKSLPDAEDY-IKDLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKA 809
M++N+ YY+++ ++ +DLE+K + F VR Y+ E + + +E AL ++F A
Sbjct: 3 MRQNLDYYQTMSGVKEADFRDLEAKPHMHEFRLGVRLYSEEKPQEAVPHLEAALQEYFVA 62
Query: 810 FYECLAACEGSREIKDFK------DFYLSIADHYVEVLECKIQCEENL-TPVIGGYPVEK 968
EC A CEG + + D + +I DHYV+VL CK C L + P E
Sbjct: 63 DEECRALCEGPYDYDGYNYLDYSADLFQAITDHYVQVLNCKQNCVTELASHPSREKPFED 122
Query: 969 FVATMYHYLQFAYYKLNDW 1025
F+ + Y+YLQFAYY + ++
Sbjct: 123 FLPSHYNYLQFAYYNIGNY 141
Score = 20.8 bits (42), Expect(2) = 2e-16
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 1031 AAPCAVSYLLFDHND 1075
A CA +YLLF ND
Sbjct: 144 AIECAKTYLLFFPND 158
Score = 60.8 bits (146), Expect = 2e-09
Identities = 49/157 (31%), Positives = 71/157 (45%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAG 389
E P +R + YS E E+V +LE +L+ + + D E C C P
Sbjct: 25 EAKPHMHEFRLGVRLYSEEKPQEAVPHLEAALQEY-FVADEE--CRALCEG-PYDYDGYN 80
Query: 390 LARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKAN 569
Y LF + + CKQ S PSRE + Y +LQFAY+
Sbjct: 81 YLDY-SADLFQAITDHYVQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIG 139
Query: 570 NLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAED 680
N +AI A T+LL P+DE+M +N+AYY ++ E+
Sbjct: 140 NYTQAIECAKTYLLFFPNDEVMHQNLAYYTAMLGEEE 176
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,984,350
Number of extensions: 710863
Number of successful extensions: 2807
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2761
Number of HSP's successfully gapped: 13
Length of query: 364
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 261
Effective length of database: 12,523,851
Effective search space: 3268725111
Effective search space used: 3268725111
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007782
(1093 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006362.1| cartilage-associated protein precursor [Homo sa... 588 e-168
Alignment gi|NP_006446.1| synaptonemal complex protein SC65 [Homo sapiens]. 340 1e-93
Alignment gi|XP_003403813.1| PREDICTED: cartilage-associated protein-like... 270 1e-72
Alignment gi|NP_001230175.1| prolyl 3-hydroxylase 1 isoform 3 precursor [... 168 7e-42
Alignment gi|NP_071751.3| prolyl 3-hydroxylase 1 isoform 1 precursor [Hom... 168 7e-42
Alignment gi|NP_001139761.1| prolyl 3-hydroxylase 1 isoform 2 precursor [... 168 7e-42
Alignment gi|NP_060662.2| prolyl 3-hydroxylase 2 isoform a [Homo sapiens]. 166 3e-41
Alignment gi|NP_055077.2| prolyl 3-hydroxylase 3 precursor [Homo sapiens]. 99 9e-21
Alignment gi|NP_001127890.1| prolyl 3-hydroxylase 2 isoform b [Homo sapie... 76 6e-14
>ref|NP_006362.1| cartilage-associated protein precursor [Homo sapiens].
Length = 401
Score = 588 bits (1517), Expect = e-168
Identities = 283/295 (95%), Positives = 287/295 (97%)
Frame = +3
Query: 156 RSGRAQYERYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSE 335
R+GRAQYERYSFRSFPRDELMPLESAYRHALD+YSGEHWAESVGYLEISLRLHRLLRDSE
Sbjct: 22 RAGRAQYERYSFRSFPRDELMPLESAYRHALDKYSGEHWAESVGYLEISLRLHRLLRDSE 81
Query: 336 AFCHRNCSAAPQPEPTAGLARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLAD 515
AFCHRNCSAAPQPEP AGLA YPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLAD
Sbjct: 82 AFCHRNCSAAPQPEPAAGLASYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLAD 141
Query: 516 FQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDL 695
FQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLP AEDYIKDL
Sbjct: 142 FQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPGAEDYIKDL 201
Query: 696 ESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFKDFYL 875
E+KSYESLFIRAVRAYNGENWRT ITDMELALPDFFKAFYECLAACEGSREIKDFKDFYL
Sbjct: 202 ETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKDFYL 261
Query: 876 SIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDWRTRPP 1040
SIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLND + P
Sbjct: 262 SIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDLKNAAP 316
Score = 52.4 bits (124), Expect = 7e-07
Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 4/203 (1%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLR-LHRLLRDSEAFCHRNCSAAPQPEPTA 386
E ES + A+ Y+GE+W S+ +E++L + + A C + +
Sbjct: 202 ETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKDFYL 261
Query: 387 GLA-RYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFK 563
+A Y E+ C +C++ L P + +A Y +LQFAY+K
Sbjct: 262 SIADHYVEV---------LECKIQCEENLTPVIGGYPVEKFVATM-----YHYLQFAYYK 307
Query: 564 ANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYESLFIR--AVR 737
N+L A A ++LL +D++M++N+ YY+ Y +D S E R AV+
Sbjct: 308 LNDLKNAAPCAVSYLLFDQNDKVMQQNLVYYQ-------YHRDTWGLSDEHFQPRPEAVQ 360
Query: 738 AYNGENWRTCITDMELALPDFFK 806
+N +T ++ L DF K
Sbjct: 361 FFN-------VTTLQKELYDFAK 376
>ref|NP_006446.1| synaptonemal complex protein SC65 [Homo sapiens].
Length = 437
Score = 340 bits (873), Expect = 1e-93
Identities = 169/296 (57%), Positives = 216/296 (72%), Gaps = 6/296 (2%)
Frame = +3
Query: 159 SGRAQYERYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEA 338
S AQYE+YSFR FP ++LMPL +AY HAL+QY GE W ES YLE +LRLHRLLRDSEA
Sbjct: 15 SAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEA 74
Query: 339 FCHRNCSA---APQPEPTAGLARY--PELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSRE 503
FCH NCS A +P+P G A ELRLFG +L RA CL+RCK+ LPAF+ P R+
Sbjct: 75 FCHANCSGPAPAAKPDPDGGRADEWACELRLFGRVLERAACLRRCKRTLPAFQVPYPPRQ 134
Query: 504 VLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPD-AED 680
+L DFQ R PY++L +A FKAN L KA+AAA+TFL ++P E+ + + YY+ + D A++
Sbjct: 135 LLRDFQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDVADE 194
Query: 681 YIKDLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDF 860
+ DLE++ YE++F+RAV+ YN ++R+ DME AL ++ F CLA CEG+ E DF
Sbjct: 195 SLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFARCLAGCEGAHEQVDF 254
Query: 861 KDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDWR 1028
KDFY +IAD + E L+CK+ CE NLTP +GGY V+KFVATMYHYLQFAYYKLND R
Sbjct: 255 KDFYPAIADLFAESLQCKVDCEANLTPNVGGYFVDKFVATMYHYLQFAYYKLNDVR 310
>ref|XP_003403813.1| PREDICTED: cartilage-associated protein-like [Homo sapiens].
Length = 222
Score = 270 bits (691), Expect = 1e-72
Identities = 129/137 (94%), Positives = 131/137 (95%)
Frame = +3
Query: 630 MMKRNMAYYKSLPDAEDYIKDLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKA 809
MMKRNMAYYKSLP AEDYIKDLE+KSYESLFIRAVRAYNGENWRT ITDMELALPDFFKA
Sbjct: 1 MMKRNMAYYKSLPGAEDYIKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKA 60
Query: 810 FYECLAACEGSREIKDFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYH 989
FYECLAACEGSREIKDFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYH
Sbjct: 61 FYECLAACEGSREIKDFKDFYLSIADHYVEVLECKIQCEENLTPVIGGYPVEKFVATMYH 120
Query: 990 YLQFAYYKLNDWRTRPP 1040
YLQFAYYKLND + P
Sbjct: 121 YLQFAYYKLNDLKNAAP 137
Score = 52.4 bits (124), Expect = 7e-07
Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 4/203 (1%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLR-LHRLLRDSEAFCHRNCSAAPQPEPTA 386
E ES + A+ Y+GE+W S+ +E++L + + A C + +
Sbjct: 23 ETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKDFYL 82
Query: 387 GLA-RYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFK 563
+A Y E+ C +C++ L P + +A Y +LQFAY+K
Sbjct: 83 SIADHYVEV---------LECKIQCEENLTPVIGGYPVEKFVATM-----YHYLQFAYYK 128
Query: 564 ANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYESLFIR--AVR 737
N+L A A ++LL +D++M++N+ YY+ Y +D S E R AV+
Sbjct: 129 LNDLKNAAPCAVSYLLFDQNDKVMQQNLVYYQ-------YHRDTWGLSDEHFQPRPEAVQ 181
Query: 738 AYNGENWRTCITDMELALPDFFK 806
+N +T ++ L DF K
Sbjct: 182 FFN-------VTTLQKELYDFAK 197
>ref|NP_001230175.1| prolyl 3-hydroxylase 1 isoform 3 precursor [Homo sapiens].
Length = 804
Score = 168 bits (426), Expect = 7e-42
Identities = 100/275 (36%), Positives = 148/275 (53%), Gaps = 18/275 (6%)
Frame = +3
Query: 255 YSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSA----------APQPEPTAGLARYP 404
Y+ W V +E +LR LR C C+A +P P +G A
Sbjct: 46 YARGDWPGVVLSMERALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALR 105
Query: 405 ELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKA 584
+L FGGLLRRA CL+RC G PA S E+ +F++R PY +LQ AYFK N L KA
Sbjct: 106 DLSFFGGLLRRAACLRRCL-GPPAAHSL--SEEMELEFRKRSPYNYLQVAYFKINKLEKA 162
Query: 585 IAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDY-IKDLESKSYESLFIRAVRAYNGENWR 761
+AAAHTF + +P+ M++N+ YY+++ ++ KDLE++ + F VR Y+ E +
Sbjct: 163 VAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQ 222
Query: 762 TCITDMELALPDFFKAFYECLAACEGSREIKDFK------DFYLSIADHYVEVLECKIQC 923
+ +E AL ++F A+ EC A CEG + + D + +I DHY++VL CK C
Sbjct: 223 EAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNC 282
Query: 924 EENL-TPVIGGYPVEKFVATMYHYLQFAYYKLNDW 1025
L + P E F+ + Y+YLQFAYY + ++
Sbjct: 283 VTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNY 317
Score = 60.8 bits (146), Expect = 2e-09
Identities = 45/152 (29%), Positives = 68/152 (44%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAG 389
E P +R + YS E E+V +LE +L+ + + + C C P
Sbjct: 201 ETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEE---CRALCEG-PYDYDGYN 256
Query: 390 LARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKAN 569
Y LF + + CKQ S PSRE + Y +LQFAY+
Sbjct: 257 YLEY-NADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIG 315
Query: 570 NLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSL 665
N +A+ A T+LL P+DE+M +N+AYY ++
Sbjct: 316 NYTQAVECAKTYLLFFPNDEVMNQNLAYYAAM 347
>ref|NP_071751.3| prolyl 3-hydroxylase 1 isoform 1 precursor [Homo sapiens].
Length = 736
Score = 168 bits (426), Expect = 7e-42
Identities = 100/275 (36%), Positives = 148/275 (53%), Gaps = 18/275 (6%)
Frame = +3
Query: 255 YSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSA----------APQPEPTAGLARYP 404
Y+ W V +E +LR LR C C+A +P P +G A
Sbjct: 46 YARGDWPGVVLSMERALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALR 105
Query: 405 ELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKA 584
+L FGGLLRRA CL+RC G PA S E+ +F++R PY +LQ AYFK N L KA
Sbjct: 106 DLSFFGGLLRRAACLRRCL-GPPAAHSL--SEEMELEFRKRSPYNYLQVAYFKINKLEKA 162
Query: 585 IAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDY-IKDLESKSYESLFIRAVRAYNGENWR 761
+AAAHTF + +P+ M++N+ YY+++ ++ KDLE++ + F VR Y+ E +
Sbjct: 163 VAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQ 222
Query: 762 TCITDMELALPDFFKAFYECLAACEGSREIKDFK------DFYLSIADHYVEVLECKIQC 923
+ +E AL ++F A+ EC A CEG + + D + +I DHY++VL CK C
Sbjct: 223 EAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNC 282
Query: 924 EENL-TPVIGGYPVEKFVATMYHYLQFAYYKLNDW 1025
L + P E F+ + Y+YLQFAYY + ++
Sbjct: 283 VTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNY 317
Score = 60.8 bits (146), Expect = 2e-09
Identities = 45/152 (29%), Positives = 68/152 (44%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAG 389
E P +R + YS E E+V +LE +L+ + + + C C P
Sbjct: 201 ETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEE---CRALCEG-PYDYDGYN 256
Query: 390 LARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKAN 569
Y LF + + CKQ S PSRE + Y +LQFAY+
Sbjct: 257 YLEY-NADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIG 315
Query: 570 NLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSL 665
N +A+ A T+LL P+DE+M +N+AYY ++
Sbjct: 316 NYTQAVECAKTYLLFFPNDEVMNQNLAYYAAM 347
>ref|NP_001139761.1| prolyl 3-hydroxylase 1 isoform 2 precursor [Homo sapiens].
Length = 697
Score = 168 bits (426), Expect = 7e-42
Identities = 100/275 (36%), Positives = 148/275 (53%), Gaps = 18/275 (6%)
Frame = +3
Query: 255 YSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSA----------APQPEPTAGLARYP 404
Y+ W V +E +LR LR C C+A +P P +G A
Sbjct: 46 YARGDWPGVVLSMERALRSRAALRALRLRCRTQCAADFPWELDPDWSPSPAQASGAAALR 105
Query: 405 ELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKA 584
+L FGGLLRRA CL+RC G PA S E+ +F++R PY +LQ AYFK N L KA
Sbjct: 106 DLSFFGGLLRRAACLRRCL-GPPAAHSL--SEEMELEFRKRSPYNYLQVAYFKINKLEKA 162
Query: 585 IAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDY-IKDLESKSYESLFIRAVRAYNGENWR 761
+AAAHTF + +P+ M++N+ YY+++ ++ KDLE++ + F VR Y+ E +
Sbjct: 163 VAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQPQ 222
Query: 762 TCITDMELALPDFFKAFYECLAACEGSREIKDFK------DFYLSIADHYVEVLECKIQC 923
+ +E AL ++F A+ EC A CEG + + D + +I DHY++VL CK C
Sbjct: 223 EAVPHLEAALQEYFVAYEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLNCKQNC 282
Query: 924 EENL-TPVIGGYPVEKFVATMYHYLQFAYYKLNDW 1025
L + P E F+ + Y+YLQFAYY + ++
Sbjct: 283 VTELASHPSREKPFEDFLPSHYNYLQFAYYNIGNY 317
Score = 60.8 bits (146), Expect = 2e-09
Identities = 45/152 (29%), Positives = 68/152 (44%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAG 389
E P +R + YS E E+V +LE +L+ + + + C C P
Sbjct: 201 ETQPHMQEFRLGVRLYSEEQPQEAVPHLEAALQEYFVAYEE---CRALCEG-PYDYDGYN 256
Query: 390 LARYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREPYKFLQFAYFKAN 569
Y LF + + CKQ S PSRE + Y +LQFAY+
Sbjct: 257 YLEY-NADLFQAITDHYIQVLNCKQNCVTELASHPSREKPFEDFLPSHYNYLQFAYYNIG 315
Query: 570 NLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSL 665
N +A+ A T+LL P+DE+M +N+AYY ++
Sbjct: 316 NYTQAVECAKTYLLFFPNDEVMNQNLAYYAAM 347
>ref|NP_060662.2| prolyl 3-hydroxylase 2 isoform a [Homo sapiens].
Length = 708
Score = 166 bits (420), Expect = 3e-41
Identities = 101/283 (35%), Positives = 149/283 (52%), Gaps = 12/283 (4%)
Frame = +3
Query: 213 LMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAA-PQPEPTAG 389
L P + Y Y + +V LE +LR HR LR+ C R+C+A P P P G
Sbjct: 41 LQPFDLLYASGAAAYYSGDYERAVRDLEAALRSHRRLREIRTRCARHCAARHPLPPPPPG 100
Query: 390 LARYPELRLFGGLLRRAHCLKRCKQ---GLPAFRQSQPSREVLADFQRREPYKFLQFAYF 560
EL LF LL RA C + C+ G PA R + S +V +DFQRR PY +LQ AY
Sbjct: 101 EGPGAELPLFRSLLGRARCYRSCETQRLGGPASRH-RVSEDVRSDFQRRVPYNYLQRAYI 159
Query: 561 KANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAED-YIKDLESKSYESLFIRAVR 737
K N L KA+ AAHTF + +P+ M++N+ Y++ E + D E+K + + V+
Sbjct: 160 KLNQLEKAVEAAHTFFVANPEHMEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVK 219
Query: 738 AYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFK------DFYLSIADHYVE 899
Y +++ I E AL ++F EC CEG + ++++ Y +IADHY++
Sbjct: 220 HYEADDFEMAIRHFEQALREYFVEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQ 279
Query: 900 VLECKIQCEENLTPVIGGY-PVEKFVATMYHYLQFAYYKLNDW 1025
VL C+ +C L G P+E F+ Y YLQFAYY++ ++
Sbjct: 280 VLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEY 322
Score = 51.6 bits (122), Expect = 1e-06
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 4/177 (2%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAG 389
E P +Y + Y + + ++ + E +LR + + D+E C C + E
Sbjct: 206 EAKPHMESYNAGVKHYEADDFEMAIRHFEQALREY-FVEDTE--CRTLCEGPQRFEEYEY 262
Query: 390 LARYPEL--RLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREP--YKFLQFAY 557
L L + ++ C C + L ++P R L+ + P Y +LQFAY
Sbjct: 263 LGYKAGLYEAIADHYMQVLVCQHECVRELA----TRPGR--LSPIENFLPLHYDYLQFAY 316
Query: 558 FKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYESLFIR 728
++ KA+ A +LL HPDDE + N+ YY+SL D +E++ ++F++
Sbjct: 317 YRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPASIEAREDLTMFVK 373
>ref|NP_055077.2| prolyl 3-hydroxylase 3 precursor [Homo sapiens].
Length = 736
Score = 98.6 bits (244), Expect = 9e-21
Identities = 80/294 (27%), Positives = 124/294 (42%), Gaps = 31/294 (10%)
Frame = +3
Query: 234 YRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAP----------QPEPT 383
Y L Y+ WA +V L +LR L C +C+A P PEP
Sbjct: 41 YADGLRAYAAGAWAPAVALLREALRSQAALGRVRLDCGASCAADPGAALPAVLLGAPEPD 100
Query: 384 AGLARYP---ELRLFGGLLRRAHCLKRCKQ------GLPAFRQSQPSREVLADFQRREPY 536
+G E +L LRRA CL +C G R R+ F+RREPY
Sbjct: 101 SGPGPTQGSWERQLLRAALRRADCLTQCAARRLGPGGAARLRVGSALRDA---FRRREPY 157
Query: 537 KFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAE-DYIKDLESKSYE 713
+LQ AY++ L A AAAHTF + +P M+ +MA Y+ + +DLE+ +
Sbjct: 158 NYLQRAYYQLKKLDLAAAAAHTFFVANPMHLQMREDMAKYRRMSGVRPQSFRDLETPPHW 217
Query: 714 SLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFKD--------- 866
+ + + + + +E AL C A CEG E + ++
Sbjct: 218 AAYDTGLELLGRQEAGLALPRLEEALQGSLAQMESCRADCEGPEEQQGAEEEEDGAASQG 277
Query: 867 -FYLSIADHYVEVLECKIQC-EENLTPVIGGYPVEKFVATMYHYLQFAYYKLND 1022
Y +IA H+++VL+C+ +C E T +PV F+ L A+ ++ +
Sbjct: 278 GLYEAIAGHWIQVLQCRQRCVGETATRPGRSFPVPDFLPNQLRRLHEAHAQVGN 331
>ref|NP_001127890.1| prolyl 3-hydroxylase 2 isoform b [Homo sapiens].
Length = 527
Score = 75.9 bits (185), Expect = 6e-14
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Frame = +3
Query: 633 MKRNMAYYKSLPDAEDY-IKDLESKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKA 809
M++N+ Y++ E + D E+K + + V+ Y +++ I E AL ++F
Sbjct: 3 MQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYFVE 62
Query: 810 FYECLAACEGSREIKDFK------DFYLSIADHYVEVLECKIQCEENLTPVIGGY-PVEK 968
EC CEG + ++++ Y +IADHY++VL C+ +C L G P+E
Sbjct: 63 DTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPIEN 122
Query: 969 FVATMYHYLQFAYYKLNDW 1025
F+ Y YLQFAYY++ ++
Sbjct: 123 FLPLHYDYLQFAYYRVGEY 141
Score = 51.6 bits (122), Expect = 1e-06
Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 4/177 (2%)
Frame = +3
Query: 210 ELMPLESAYRHALDQYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPTAG 389
E P +Y + Y + + ++ + E +LR + + D+E C C + E
Sbjct: 25 EAKPHMESYNAGVKHYEADDFEMAIRHFEQALREY-FVEDTE--CRTLCEGPQRFEEYEY 81
Query: 390 LARYPEL--RLFGGLLRRAHCLKRCKQGLPAFRQSQPSREVLADFQRREP--YKFLQFAY 557
L L + ++ C C + L ++P R L+ + P Y +LQFAY
Sbjct: 82 LGYKAGLYEAIADHYMQVLVCQHECVRELA----TRPGR--LSPIENFLPLHYDYLQFAY 135
Query: 558 FKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDAEDYIKDLESKSYESLFIR 728
++ KA+ A +LL HPDDE + N+ YY+SL D +E++ ++F++
Sbjct: 136 YRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPASIEAREDLTMFVK 192
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,382,625
Number of extensions: 845762
Number of successful extensions: 3490
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3430
Number of HSP's successfully gapped: 16
Length of query: 364
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,868,908
Effective search space: 3865916080
Effective search space used: 3865916080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007782
(1093 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893256.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 345 3e-92
gb|GL892941.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 339 2e-90
gb|GL896130.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 262 4e-67
gb|GL896136.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 121 8e-25
Sscrofa_Chr12 92 8e-16
>gb|GL893256.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2039
Length = 9783
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 712 agagccttttcatccgagctgtgcgggcgtacaatggtgagaactggaggacgtgcatca 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5013 agagccttttcatccgagctgtgcgggcgtacaatggtgagaactggaggacgtgcatca 4954
Query: 772 cggacatggagctggcccttcccgacttcttcaaggccttttatgagtgtctggctgcct 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4953 cggacatggagctggcccttcccgacttcttcaaggccttttatgagtgtctggctgcct 4894
Query: 832 gcgagggctcccgggagatcaaggacttcaaggatttctatctttccatagcag 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4893 gcgagggctcccgggagatcaaggacttcaaggatttctatctttccatagcag 4840
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 562 aggcaaataatctcccgaaagccattgctgctgctcacacctttctattgaagcatcctg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9392 aggcaaataatctcccgaaagccattgctgctgctcacacctttctattgaagcatcctg 9333
Query: 622 atgatgaaatgatgaagagaaacatggcttattacaagagcctgcctgatgccgaggact 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9332 atgatgaaatgatgaagagaaacatggcttattacaagagcctgcctgatgccgaggact 9273
Query: 682 acattaaagacttggaaagcaagtcgtatgag 713
||||||||||||||||||||||||||||||||
Sbjct: 9272 acattaaagacttggaaagcaagtcgtatgag 9241
>gb|GL892941.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1756
Length = 17775
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Minus
Query: 397 gctatccagagctgcgcctctttgggggcctgctgcgccgcgcacactgcctcaaacgct 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5202 gctatccagagctgcgcctctttgggggcctgctgcgccgcgcacactgcctcaaacgct 5143
Query: 457 gcaagcagggcctgccagccttccgccagtcacagcccagccgcgaagtactggccgact 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5142 gcaagcagggcctgccagccttccgccagtcacagcccagccgcgaagtactggccgact 5083
Query: 517 tccagcgccgagagccctacaagtttctgcagttcgcctacttcaaggcaa 567
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5082 tccagcgccgagagccctacaagtttctgcagttcgcctacttcaaggcaa 5032
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 230 ggcctaccggcacgcgctggaccagtacagcggcgagcactgggccgagagcgtgggct 288
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5361 ggcctaccggcacgcgctggaccagtacagcggcgagcactgggccgagagcgtgggct 5303
>gb|GL896130.1| Sus scrofa unplaced genomic scaffold chrU_scaffold500
Length = 2745
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 883 cagatcattatgtggaagttctggaatgcaaaatccagtgtgaagagaacctcaccccag 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cagatcattatgtggaagttctggaatgcaaaatccagtgtgaagagaacctcaccccag 808
Query: 943 ttataggaggctatccagtggagaaatttgtggctaccatgtatcattatttgcagtttg 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ttataggaggctatccagtggagaaatttgtggctaccatgtatcattatttgcagtttg 868
Query: 1003 cctattataagt 1014
||||||||||||
Sbjct: 869 cctattataagt 880
>gb|GL896136.1| Sus scrofa unplaced genomic scaffold chrU_scaffold506
Length = 2397
Score = 121 bits (61), Expect = 8e-25
Identities = 68/69 (98%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 1026 agaacgcggccccctgtgccgtcagctacctgctcttcgatcacaacgac-aggtcatgc 1084
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 715 agaacgcggccccctgtgccgtcagctacctgctcttcgatcacaacgacaaggtcatgc 656
Query: 1085 agcagaacc 1093
|||||||||
Sbjct: 655 agcagaacc 647
>Sscrofa_Chr12
|| Length = 63588571
Score = 91.7 bits (46), Expect = 8e-16
Identities = 145/178 (81%)
Strand = Plus / Minus
Query: 183 tacagcttccgcagcttcccgcgggacgagctgatgccgctcgagtcggcctaccggcac 242
||||||||||| ||||||||| || || |||||||| || | |||||||| |||||
Sbjct: 21194353 tacagcttccggggcttcccgcccgaggacctgatgcccctggccgcggcctacgggcac 21194294
Query: 243 gcgctggaccagtacagcggcgagcactgggccgagagcgtgggctacctggagattagc 302
|||||||| |||||| |||||| |||| |||||||| | ||||||| |||
Sbjct: 21194293 gcgctggagcagtacgagggcgagagctggcgcgagagcgcgcgctacctcgaggcggcg 21194234
Query: 303 ctgcggctgcaccgcctgctgcgcgacagcgaggccttctgccaccgcaactgcagcg 360
|||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 21194233 ctgcggctgcaccggctgctgcgggacagcgaggccttctgccacgccaactgcagcg 21194176
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,432,841
Number of extensions: 106
Number of successful extensions: 106
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 7
Length of query: 1093
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1072
Effective length of database: 2,808,413,156
Effective search space: 3010618903232
Effective search space used: 3010618903232
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)