Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007790
(949 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070451.1| hypothetical protein LOC767904 [Bos taurus]. 436 e-132
Alignment gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru... 332 e-101
Alignment gi|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taur... 328 e-100
Alignment gi|XP_584616.5| PREDICTED: MHC class I heavy chain [Bos taurus]. 328 e-100
Alignment gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp... 326 1e-99
Alignment gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru... 325 3e-99
Alignment gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus]. 326 3e-99
Alignment gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus]. 323 5e-98
Alignment gi|NP_001099086.1| non-classical MHC class I antigen [Bos tauru... 321 1e-97
Alignment gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru... 318 2e-96
>ref|NP_001070451.1| hypothetical protein LOC767904 [Bos taurus].
Length = 374
Score = 436 bits (1120), Expect(2) = e-132
Identities = 208/288 (72%), Positives = 233/288 (80%)
Frame = +2
Query: 26 MQVTEPRTXXXXXXXXXXXTETWAGHLHHGPKDPRLEKGQTRPQPLPVIGSHSLRYLHIL 205
M+VTEPRT TETWAGH+H G DPR ++ + QPLPV G HSLRY HIL
Sbjct: 1 MRVTEPRTLLLLFSGSLALTETWAGHIHLGHGDPRPKERRPGWQPLPVPGVHSLRYFHIL 60
Query: 206 VSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDRQTDIAKEHS 385
VSRP G DLY SVG+LDDTQFVR++SD ANPRVE RAPWME EG EYWDRQT+IA EHS
Sbjct: 61 VSRPDLGRDLYQSVGYLDDTQFVRYNSDTANPRVEQRAPWMEHEGPEYWDRQTNIAIEHS 120
Query: 386 KASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDGDDYIVLNEDLR 565
+ SR+NL+VI+GNHNHS+ ESHSFLW+SGCDVG DGRI+RGYE F+YDG DYI LNED+R
Sbjct: 121 QDSRANLKVIVGNHNHSELESHSFLWLSGCDVGPDGRIVRGYEHFAYDGADYITLNEDMR 180
Query: 566 SWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRAVPPKTHVTR 745
SW+A TVAQIIRRKWE EG AE+YRAYLE CV+WLRKYLEKGK+ L RAVPPKTHVTR
Sbjct: 181 SWSAAGTVAQIIRRKWEMEGTAERYRAYLETYCVDWLRKYLEKGKETLLRAVPPKTHVTR 240
Query: 746 HPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
HP D +VTLRCWALGFY EISLTWQ DGEDQTQ+ME+VET G G
Sbjct: 241 HPISDREVTLRCWALGFYRAEISLTWQCDGEDQTQNMEVVETRPSGDG 288
Score = 56.2 bits (134), Expect(2) = e-132
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVPSGEEQ YTC
Sbjct: 283 RPSGDGTFQKWAALVVPSGEEQRYTC 308
>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
Length = 361
Score = 332 bits (851), Expect(2) = e-101
Identities = 157/239 (65%), Positives = 182/239 (76%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSLRY + VSRPG G + +VG++DDTQFVRF SDAA+PR EPR PWMEQEG EYW
Sbjct: 25 GSHSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRFDSDAADPRTEPRVPWMEQEGPEYW 84
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
DR+T K+ ++ R NL ++G +N S++ SH+ W+ GCDV DGR LRGY Q +YDG
Sbjct: 85 DRETRNLKDAAQTFRVNLNTLLGYYNQSEAGSHTLQWMYGCDVEPDGRFLRGYRQDAYDG 144
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LN+DLRSWTA T AQI +RKWEA G AE+ R YLE CVEWLR+YLE GKD L
Sbjct: 145 RDYIALNQDLRSWTAADTAAQITKRKWEAAGEAERRRNYLEGRCVEWLRRYLENGKDTLL 204
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPK HVTRHP D +VTLRCWALGFYP+EISLTWQ +GEDQTQDMELVET G G
Sbjct: 205 RADPPKAHVTRHPSSDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDG 263
Score = 56.2 bits (134), Expect(2) = e-101
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVPSGEEQ YTC
Sbjct: 258 RPSGDGTFQKWAALVVPSGEEQRYTC 283
>ref|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taurus].
Length = 437
Score = 328 bits (841), Expect(2) = e-100
Identities = 164/293 (55%), Positives = 194/293 (66%)
Frame = +2
Query: 11 PQTGRMQVTEPRTXXXXXXXXXXXTETWAGHLHHGPKDPRLEKGQTRPQPLPVIGSHSLR 190
PQT R++V PRT TETWAG SHSL
Sbjct: 70 PQTRRIRVMGPRTLLLLLSEVLVLTETWAG-------------------------SHSLS 104
Query: 191 YLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDRQTDI 370
Y VSRPG G + +VG++DDTQF RF SDA NPR+EPRAPWMEQEG EYW+ T
Sbjct: 105 YFCTCVSRPGLGEPRFFAVGYVDDTQFARFDSDAPNPRMEPRAPWMEQEGPEYWEAMTRD 164
Query: 371 AKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDGDDYIVL 550
AK+ + R+ L + G +N S++ SH+ WV GCDVG +GR+LRG Q +YDG DY+ L
Sbjct: 165 AKKAQQRLRTGLNTLRGFYNQSEAGSHTLQWVFGCDVGPEGRLLRGIWQNAYDGADYLAL 224
Query: 551 NEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRAVPPK 730
NEDLRSWTA +TVAQI +RKWE G AE R YLE++CV+WL ++LE GKD L RA PPK
Sbjct: 225 NEDLRSWTAANTVAQITKRKWETSGEAEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPK 284
Query: 731 THVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
THV HP D +VTLRCWALGFYP+EISLTWQ+DGEDQTQDMELVET G G
Sbjct: 285 THVAHHPISDREVTLRCWALGFYPEEISLTWQQDGEDQTQDMELVETRPSGDG 337
Score = 56.2 bits (134), Expect(2) = e-100
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVPSGEEQ YTC
Sbjct: 332 RPSGDGTFQKWAALVVPSGEEQRYTC 357
>ref|XP_584616.5| PREDICTED: MHC class I heavy chain [Bos taurus].
Length = 437
Score = 328 bits (841), Expect(2) = e-100
Identities = 164/293 (55%), Positives = 194/293 (66%)
Frame = +2
Query: 11 PQTGRMQVTEPRTXXXXXXXXXXXTETWAGHLHHGPKDPRLEKGQTRPQPLPVIGSHSLR 190
PQT R++V PRT TETWAG SHSL
Sbjct: 70 PQTRRIRVMGPRTLLLLLSEVLVLTETWAG-------------------------SHSLS 104
Query: 191 YLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDRQTDI 370
Y VSRPG G + +VG++DDTQF RF SDA NPR+EPRAPWMEQEG EYW+ T
Sbjct: 105 YFCTCVSRPGLGEPRFFAVGYVDDTQFARFDSDAPNPRMEPRAPWMEQEGPEYWEAMTRD 164
Query: 371 AKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDGDDYIVL 550
AK+ + R+ L + G +N S++ SH+ WV GCDVG +GR+LRG Q +YDG DY+ L
Sbjct: 165 AKKAQQRLRTGLNTLRGFYNQSEAGSHTLQWVFGCDVGPEGRLLRGIWQNAYDGADYLAL 224
Query: 551 NEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRAVPPK 730
NEDLRSWTA +TVAQI +RKWE G AE R YLE++CV+WL ++LE GKD L RA PPK
Sbjct: 225 NEDLRSWTAANTVAQITKRKWETSGEAEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPK 284
Query: 731 THVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
THV HP D +VTLRCWALGFYP+EISLTWQ+DGEDQTQDMELVET G G
Sbjct: 285 THVAHHPISDREVTLRCWALGFYPEEISLTWQQDGEDQTQDMELVETRPSGDG 337
Score = 56.2 bits (134), Expect(2) = e-100
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVPSGEEQ YTC
Sbjct: 332 RPSGDGTFQKWAALVVPSGEEQRYTC 357
>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6
precursor [Bos taurus].
Length = 360
Score = 326 bits (835), Expect(2) = 1e-99
Identities = 153/239 (64%), Positives = 180/239 (75%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHS+RY VSRPG G Y VG++DDTQFVRF SDA NPR+EPR W++QEG EYW
Sbjct: 22 GSHSMRYFSTAVSRPGFGEPRYLEVGYVDDTQFVRFDSDARNPRMEPRTRWVKQEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
DR T AK ++++ R L + G +N S++ SH+ W+SGC VG DGR+LRG+ Q+ YDG
Sbjct: 82 DRNTRNAKGNAQSFRVGLNTLRGYYNQSEAGSHTLQWMSGCYVGPDGRLLRGFMQYGYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DY+ LNEDLRSWTA T AQI +RKWEAEG AE R YLE ECVEWLR+++E GKD L
Sbjct: 142 RDYLALNEDLRSWTAADTEAQITKRKWEAEGYAEVQRNYLEGECVEWLRRHMENGKDTLL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPK HVT HP D +VTLRCWALGFYP+EISLTWQ +GEDQTQDMELVET G G
Sbjct: 202 RADPPKAHVTHHPISDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDG 260
Score = 56.6 bits (135), Expect(2) = 1e-99
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVPSGEEQ YTC
Sbjct: 255 RPSGDGTFQKWAALVVPSGEEQKYTC 280
>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
Length = 358
Score = 325 bits (833), Expect(2) = 3e-99
Identities = 155/239 (64%), Positives = 178/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSLRY VSRPG G + +VG++DDTQF RF SDA NPR EPR PWMEQEG EYW
Sbjct: 22 GSHSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSDAPNPREEPRVPWMEQEGLEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
DR T I K+ ++ R L + G +N S++ SH+ W+SGCDVG DGR+LRG+ QF YDG
Sbjct: 82 DRNTRIYKDTAQTFRVYLNALRGYYNQSEAGSHTLQWMSGCDVGPDGRLLRGFWQFGYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
+YI LNEDLRSWTA T AQI +RKWEA G AE R Y+E CVE LR+YLE GKD L
Sbjct: 142 RNYIALNEDLRSWTAADTAAQITKRKWEAAGAAEGERNYVEGRCVEGLRRYLENGKDALL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPK HVT HP + +VTLRCWALGFYP+EISLTWQR+GEDQTQDMELVET G G
Sbjct: 202 RADPPKAHVTHHPISEREVTLRCWALGFYPEEISLTWQREGEDQTQDMELVETRPSGDG 260
Score = 56.2 bits (134), Expect(2) = 3e-99
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVPSGEEQ YTC
Sbjct: 255 RPSGDGTFQKWAALVVPSGEEQRYTC 280
>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
Length = 359
Score = 326 bits (836), Expect(2) = 3e-99
Identities = 155/239 (64%), Positives = 181/239 (75%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSLRY + VSRPG G + VG++DDTQFVRF SDA +PRVEPRA W+EQEG EYW
Sbjct: 22 GSHSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAGDPRVEPRARWVEQEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
D++T AK+H++ R L + G +N S++ SH+ W+ GCDVG DGR+LRG+ QF Y+G
Sbjct: 82 DQETRKAKDHAQFFRLGLNTLRGYYNQSEAGSHTLQWMYGCDVGPDGRLLRGFWQFGYEG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDLRSWTA T AQI +RKWEA VAE+ R YLE CVEWL +YLE GKD L
Sbjct: 142 RDYIALNEDLRSWTAADTAAQISKRKWEAADVAERQRNYLEGTCVEWLPRYLENGKDTLL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPK HVT HP +VTLRCWALGFYP+EISLTWQR+GEDQTQDMELVET G G
Sbjct: 202 RADPPKAHVTHHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDG 260
Score = 54.7 bits (130), Expect(2) = 3e-99
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKW ALVVPSGEEQ YTC
Sbjct: 255 RPSGDGTFQKWVALVVPSGEEQRYTC 280
>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
Length = 361
Score = 323 bits (827), Expect(2) = 5e-98
Identities = 154/239 (64%), Positives = 178/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHS+RY VSRPG G Y VG++DDTQFVRF SDA NPR+EPRA W++QEG EYW
Sbjct: 25 GSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRFDSDAPNPRMEPRARWVKQEGPEYW 84
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
D +T AK ++ R NL + G +N S++ SH+ W+ GCDVG DGR+ RG+ QF YDG
Sbjct: 85 DEETQRAKGITQVFRVNLNTLRGYYNQSEAGSHTLQWMCGCDVGPDGRLRRGFWQFGYDG 144
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DY+ LNEDLRSWTA T AQI +RK EA G AE R Y+E CVEWLR+YLE GKD L
Sbjct: 145 RDYLALNEDLRSWTAADTGAQISKRKMEAAGAAESGRKYVEGTCVEWLRRYLENGKDTLL 204
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPK HVT HP D++VTLRCWALGFYPKEISLTWQR+GEDQTQDMELVET G G
Sbjct: 205 RADPPKAHVTHHPISDHEVTLRCWALGFYPKEISLTWQRNGEDQTQDMELVETRPSGDG 263
Score = 54.3 bits (129), Expect(2) = 5e-98
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDG FQKWAALVVPSGEEQ YTC
Sbjct: 258 RPSGDGNFQKWAALVVPSGEEQRYTC 283
>ref|NP_001099086.1| non-classical MHC class I antigen [Bos taurus].
Length = 342
Score = 321 bits (822), Expect(2) = 1e-97
Identities = 148/239 (61%), Positives = 183/239 (76%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HS+RY VSRPG G + +VG++DDTQFVRF SD +PR+EPRA W+E EG EYW
Sbjct: 22 GPHSMRYFLTAVSRPGLGEPRFITVGYVDDTQFVRFDSDRPDPRMEPRARWVEDEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
D++T I KE+++ R+NL ++G +N S++ SH+ W+ GC VGSDGR+LRGY Q +YDG
Sbjct: 82 DQETRIQKENTQTFRANLNTLLGYYNQSEAGSHTIQWMHGCGVGSDGRLLRGYNQHAYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DY+ LNEDLRSWTA T AQI +RKWEA G AE++R YLE +CV+ LR++LE GKD L
Sbjct: 142 KDYLALNEDLRSWTAADTAAQITKRKWEATGAAERFRNYLEGKCVKLLRRHLENGKDTLL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PP HVT HP + +VTLRCWALGFYP+EISLTWQR+GEDQTQDMELVET G G
Sbjct: 202 RADPPMAHVTHHPISEREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDG 260
Score = 54.7 bits (130), Expect(2) = 1e-97
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAAL VPSGEEQ YTC
Sbjct: 255 RPSGDGTFQKWAALAVPSGEEQRYTC 280
>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
Length = 363
Score = 318 bits (815), Expect(2) = 2e-96
Identities = 152/239 (63%), Positives = 182/239 (76%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSLRY + VSRPG G + SVG++DDTQFVRF SDA NPR+EPRA W+EQEG EYW
Sbjct: 25 GSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPNPRMEPRARWVEQEGPEYW 84
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
DR+T +K+ ++ R +L + G +N S++ SH+ + GC VG DG + RG+ Q+ YDG
Sbjct: 85 DRETRNSKDTAQGFRVDLNTLRGYYNQSEAGSHTLQLMYGCYVGPDGSLRRGFTQYGYDG 144
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DY+ LNEDLRSWTA+ T+AQI +RK EA GVAE+ R YLE CVEWLR+YLE GKD L
Sbjct: 145 RDYLALNEDLRSWTAVETMAQISKRKVEAAGVAEKQRNYLEGRCVEWLRRYLENGKDTLL 204
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPK HVTRHP +VTLRCWALGFYP+EISLTWQR+GEDQTQDMELVET G G
Sbjct: 205 RADPPKAHVTRHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDG 263
Score = 53.5 bits (127), Expect(2) = 2e-96
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDG FQKWAAL+VPSGEEQ YTC
Sbjct: 258 RPSGDGNFQKWAALLVPSGEEQKYTC 283
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,672,225
Number of extensions: 1322338
Number of successful extensions: 10519
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 9955
Number of HSP's successfully gapped: 64
Length of query: 316
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,306,398
Effective search space: 3061569172
Effective search space used: 3061569172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007790
(949 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris]. 345 e-104
Alignment gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris]. 320 1e-96
Alignment gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris]. 315 4e-95
Alignment gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris]. 277 5e-84
Alignment gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris]. 277 5e-84
Alignment gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein... 137 8e-33
Alignment gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s... 74 1e-18
>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
Length = 361
Score = 345 bits (885), Expect(2) = e-104
Identities = 158/239 (66%), Positives = 192/239 (80%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSLR+ H VSRPG G LY SVG++DDTQF+RF+SDAA+P+VEPRA WMEQEG E+W
Sbjct: 25 GSHSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQEGPEFW 84
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+ QT+IAK H++ SRSNL+ +G +N S++ SH+F W SGCDVG DGR+LRGYEQF+YDG
Sbjct: 85 EEQTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQFAYDG 144
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DY+ L+EDLRSWTA AQI RRKWEA G A+ YR YL+ ECV+ L KYLE+GK+ LQ
Sbjct: 145 ADYLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERGKETLQ 204
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
PPK ++TRHP D++VTLRCWALGFYP EI+LTWQRDGEDQTQD E+V+T G G
Sbjct: 205 LTDPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDG 263
Score = 52.8 bits (125), Expect(2) = e-104
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWAA+VVPSG+EQ YTC
Sbjct: 258 RPAGDGTFQKWAAVVVPSGQEQRYTC 283
>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
Length = 361
Score = 320 bits (819), Expect(2) = 1e-96
Identities = 153/239 (64%), Positives = 179/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSLRY + VSRPG G + +VG++DDTQFVRF SDAA R+EPRAPWMEQEG EYW
Sbjct: 25 GSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYW 84
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
DR+T KE ++ R +L + G +N S++ SH+ + GCD+G GR+LRGY Q +YDG
Sbjct: 85 DRETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDG 144
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDLRSWTA T AQI RRKWEA G AE R YLE CVEWLR+YLE GK+ L
Sbjct: 145 ADYIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLL 204
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PP T VTRHP D++VTLRCWALGFYP EI+LTWQRDGEDQTQD E+V+T G G
Sbjct: 205 RAEPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDG 263
Score = 52.8 bits (125), Expect(2) = 1e-96
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWAA+VVPSG+EQ YTC
Sbjct: 258 RPAGDGTFQKWAAVVVPSGQEQRYTC 283
>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
Length = 358
Score = 315 bits (806), Expect(2) = 4e-95
Identities = 151/239 (63%), Positives = 177/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSLRY + VSRPG G + +VG++DDTQFVRF SDAA R+EPRAPW+EQEG EYW
Sbjct: 22 GSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWVEQEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
D QT KE ++ R +L + G +N S++ SH+F W+ GCD+G GR+LRGY Q +YDG
Sbjct: 82 DPQTRTIKETARTFRVDLDTLRGYYNQSEAGSHTFQWMFGCDLGPGGRLLRGYSQDAYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDLRSWTA AQI RRK EA G A R YLE CVEWLR+YLE GK+ L
Sbjct: 142 ADYIALNEDLRSWTAADAAAQITRRKREAAGDAGHLRNYLETTCVEWLRRYLEMGKETLL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PP T VTRHP D++VTLRCWALGFYP EI+LTWQRDGEDQTQD E+V+T G G
Sbjct: 202 RAEPPSTRVTRHPVSDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDG 260
Score = 52.8 bits (125), Expect(2) = 4e-95
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWAA+VVPSG+EQ YTC
Sbjct: 255 RPAGDGTFQKWAAVVVPSGQEQRYTC 280
>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
Length = 381
Score = 277 bits (708), Expect(2) = 5e-84
Identities = 133/240 (55%), Positives = 174/240 (72%), Gaps = 1/240 (0%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSLR+L+ +VSRPGHG + +V ++DDT F RF+S+ R EP W+EQEG EYW
Sbjct: 30 GSHSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYW 89
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNH-NHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYD 529
+ +T ++ ++ R L + ++ N S++ SH+F ++GCDVG DGR LRGY++ +YD
Sbjct: 90 EERTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYD 149
Query: 530 GDDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVL 709
G DYI L+EDLRSW VAQI RRKW+A VAE + +LE C+EWLR++LE G++ L
Sbjct: 150 GLDYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETL 209
Query: 710 QRAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
QRA PPKT VTR P +++VTL+CWALGFYP EI+LTWQRDGEDQTQD ELVET G G
Sbjct: 210 QRADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDG 269
Score = 53.5 bits (127), Expect(2) = 5e-84
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P GDGTFQKWAA+VVPSGEEQ YTC
Sbjct: 264 RPGGDGTFQKWAAVVVPSGEEQRYTC 289
>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
Length = 381
Score = 277 bits (708), Expect(2) = 5e-84
Identities = 133/240 (55%), Positives = 174/240 (72%), Gaps = 1/240 (0%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSLR+L+ +VSRPGHG + +V ++DDT F RF+S+ R EP W+EQEG EYW
Sbjct: 30 GSHSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYW 89
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNH-NHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYD 529
+ +T ++ ++ R L + ++ N S++ SH+F ++GCDVG DGR LRGY++ +YD
Sbjct: 90 EERTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYD 149
Query: 530 GDDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVL 709
G DYI L+EDLRSW VAQI RRKW+A VAE + +LE C+EWLR++LE G++ L
Sbjct: 150 GLDYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETL 209
Query: 710 QRAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
QRA PPKT VTR P +++VTL+CWALGFYP EI+LTWQRDGEDQTQD ELVET G G
Sbjct: 210 QRADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDG 269
Score = 53.5 bits (127), Expect(2) = 5e-84
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P GDGTFQKWAA+VVPSGEEQ YTC
Sbjct: 264 RPGGDGTFQKWAAVVVPSGEEQRYTC 289
>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
(Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
familiaris].
Length = 315
Score = 137 bits (344), Expect(2) = 8e-33
Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 2/228 (0%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G +SL + + +SRP G + + +L+D F + S+ + PR PW + EG E W
Sbjct: 26 GPYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDSETG--KAIPRYPWSQMEGIEDW 83
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
++++ + K L+ I+ + + SH+F + GC++ + + + +++YDG
Sbjct: 84 EKESKLQKAREDIFMVTLKDIMEYYKDKEG-SHTFQGMFGCEL-QNNKNSGAFWRYAYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGV-AEQYRAYLEIECVEWLRKYLEKGKDVL 709
++I N+++ +W A ++KWEAE V ++ +AYLE EC L++YLE GK L
Sbjct: 142 RNFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECPVMLQRYLEYGKTYL 201
Query: 710 QRAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTW-QRDGEDQTQ 850
R PP +T H + TL+CW GFYP+EI L W Q D +T+
Sbjct: 202 DRQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHWIQADDTQETK 249
Score = 22.3 bits (46), Expect(2) = 8e-33
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Frame = +1
Query: 874 PSGDGTFQKWAALVVPSGEEQ-----SYTC 948
PSG+ T+Q W VV S Q SY+C
Sbjct: 256 PSGNNTYQAW---VVMSASPQDLASFSYSC 282
>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
(FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
transporter, alpha chain) [Canis familiaris].
Length = 354
Score = 74.3 bits (181), Expect(2) = 1e-18
Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 2/220 (0%)
Frame = +2
Query: 182 SLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWM-EQEGREYWDR 358
SL Y VS P G+ + + G+L Q++ +++ A + EP W+ E + YW++
Sbjct: 28 SLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNNLRA--QAEPYGAWVWENQVSWYWEK 85
Query: 359 QTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDGDD 538
+T + L+ + ++ + GC++G D + +F+ +G+D
Sbjct: 86 ETTDLRTKEGLFLEALKAL------GDGGPYTLQGLLGCELGPDNTSVP-VAKFALNGED 138
Query: 539 YIVLNEDLRSWTAISTVAQIIRRKW-EAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQR 715
++ + L +W + + ++W + G + R +L C + L +LE+G+ L+
Sbjct: 139 FMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLYSCPQRLLGHLERGRGNLEW 198
Query: 716 AVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDG 835
PP + P L C A FYP E+ L + R+G
Sbjct: 199 KEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNG 238
Score = 37.4 bits (85), Expect(2) = 1e-18
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 850 GHGARGDQPSGDGTFQKWAALVVPSGEEQSYTC 948
G G P+GDG+F W++L V SG+E Y C
Sbjct: 242 GSGEGDFGPNGDGSFHAWSSLTVKSGDEHHYRC 274
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,621,897
Number of extensions: 1369293
Number of successful extensions: 10561
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 10006
Number of HSP's successfully gapped: 14
Length of query: 316
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 213
Effective length of database: 15,440,896
Effective search space: 3288910848
Effective search space used: 3288910848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007790
(949 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa]. 567 e-172
Alignment gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa]. 316 1e-96
Alignment gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa]. 314 3e-96
Alignment gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa]. 313 1e-95
Alignment gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa]. 311 2e-95
Alignment gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa]. 308 2e-94
Alignment gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a... 306 1e-93
Alignment gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa]. 304 4e-93
Alignment gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a... 297 3e-91
Alignment gi|XP_003361021.1| PREDICTED: class I histocompatibility antige... 177 3e-51
>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
Length = 369
Score = 567 bits (1461), Expect(2) = e-172
Identities = 272/288 (94%), Positives = 273/288 (94%)
Frame = +2
Query: 26 MQVTEPRTXXXXXXXXXXXTETWAGHLHHGPKDPRLEKGQTRPQPLPVIGSHSLRYLHIL 205
MQVTEPRT TETWAGHLHHGPKDPRLEKGQTRPQPLPVIGSHSLRYLHIL
Sbjct: 1 MQVTEPRTLLLVLSGSLALTETWAGHLHHGPKDPRLEKGQTRPQPLPVIGSHSLRYLHIL 60
Query: 206 VSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDRQTDIAKEHS 385
VSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDRQTDIAKEHS
Sbjct: 61 VSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDRQTDIAKEHS 120
Query: 386 KASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDGDDYIVLNEDLR 565
KASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGS+GRILRGYEQFSYDGDDYIVLNEDLR
Sbjct: 121 KASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSEGRILRGYEQFSYDGDDYIVLNEDLR 180
Query: 566 SWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRAVPPKTHVTR 745
SWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRAVPPKTHVTR
Sbjct: 181 SWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRAVPPKTHVTR 240
Query: 746 HPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
HPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVET G G
Sbjct: 241 HPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETRPSGDG 288
Score = 58.2 bits (139), Expect(2) = e-172
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVPSGEEQSYTC
Sbjct: 283 RPSGDGTFQKWAALVVPSGEEQSYTC 308
>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
Length = 361
Score = 316 bits (809), Expect(2) = 1e-96
Identities = 153/239 (64%), Positives = 177/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSLRY VSRP G + SVG++DDTQFVRF SDA NPR+EPRAPW+EQEG+EYW
Sbjct: 22 GPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
D +T A ++ R NL + G +N S++ SH+ + GCDVG D LRGY Q +YDG
Sbjct: 82 DEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDLRSWTA T AQI +RKWEA AEQ R+YLE CVEWL+KYL+ G + LQ
Sbjct: 142 ADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQ 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPKTHVTRHP D VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVET G G
Sbjct: 202 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDG 260
Score = 56.2 bits (134), Expect(2) = 1e-96
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVP GEEQSYTC
Sbjct: 255 RPSGDGTFQKWAALVVPPGEEQSYTC 280
>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
Length = 364
Score = 314 bits (805), Expect(2) = 3e-96
Identities = 150/239 (62%), Positives = 179/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSL Y + VSRP G + +VG++DDTQFVRF SDA NPR+EPRAPW++QEG++YW
Sbjct: 25 GPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQEGQDYW 84
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
DR+T ++ R NL+ + G +N S++ SH+ + GCDVG DG +LRGY Q +YDG
Sbjct: 85 DRETRNVMGSAQTDRVNLKTLRGYYNQSEAGSHTIQVMYGCDVGPDGLLLRGYRQDAYDG 144
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDLRSWTA T AQI +RKWEA AE R+YL+ CVE L+KYLE GKD LQ
Sbjct: 145 ADYIALNEDLRSWTAADTAAQITKRKWEAADAAEGERSYLQGLCVEGLQKYLEMGKDTLQ 204
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPKTHVTRHP D VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVET G G
Sbjct: 205 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDG 263
Score = 56.2 bits (134), Expect(2) = 3e-96
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVP GEEQSYTC
Sbjct: 258 RPSGDGTFQKWAALVVPPGEEQSYTC 283
>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
Length = 401
Score = 313 bits (803), Expect(2) = 1e-95
Identities = 150/240 (62%), Positives = 181/240 (75%)
Frame = +2
Query: 179 HSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDR 358
HSLRY + VSRP +S VG++DDTQFVRF S+A NPR EPR PW+E EG E DR
Sbjct: 24 HSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSNAPNPREEPRTPWVELEGPECCDR 83
Query: 359 QTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDGDD 538
T I K+ S+ + +L V+ G +N S++ SH++ W+ GC V DGR+LRGY QF+YDG D
Sbjct: 84 NTRIYKDTSQNFQVSLNVLRGYYNQSEAGSHTYQWLCGCYVARDGRLLRGYSQFAYDGAD 143
Query: 539 YIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRA 718
YIVLNEDLRSWTA+ AQI RRKWE E VAEQ RAYLE+ CV+ L +YL GK+ LQR+
Sbjct: 144 YIVLNEDLRSWTAVGMAAQITRRKWEEETVAEQSRAYLEVACVQSLHRYLANGKETLQRS 203
Query: 719 VPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMGPSR 898
PPKTHVTRHP DNKVTLRCWALGFYPKEISLTWQ++G+DQ+QD+E+VET G G R
Sbjct: 204 DPPKTHVTRHPSSDNKVTLRCWALGFYPKEISLTWQQEGQDQSQDVEVVETRPSGDGTFR 263
Score = 54.7 bits (130), Expect(2) = 1e-95
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTF+KWAALVVP GEEQSYTC
Sbjct: 255 RPSGDGTFRKWAALVVPPGEEQSYTC 280
>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
Length = 361
Score = 311 bits (797), Expect(2) = 2e-95
Identities = 149/239 (62%), Positives = 181/239 (75%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSL Y + VSRP G + VG++DDTQFVRF SDA NPR+EPRAPW+E+EG++YW
Sbjct: 22 GPHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRMEPRAPWIEKEGQDYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
D +T KE ++ +R +L+ + G +N S++ SH+ + GC +G DG +LRGY Q +YDG
Sbjct: 82 DEETRKVKETAQINRVDLKTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLRGYRQDAYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDLRSWTA T AQI +RKWEA AEQ+R+YL+ CVE LR+YLE GKD LQ
Sbjct: 142 ADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQWRSYLQGLCVESLREYLEMGKDTLQ 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPKTHVTRHP D VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVET G G
Sbjct: 202 RADPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDG 260
Score = 56.2 bits (134), Expect(2) = 2e-95
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVP GEEQSYTC
Sbjct: 255 RPSGDGTFQKWAALVVPPGEEQSYTC 280
>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
Length = 355
Score = 308 bits (790), Expect(2) = 2e-94
Identities = 140/239 (58%), Positives = 182/239 (76%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHS+RY H +VSRPG+G Y VG++DDTQFVRF S+A NPR+EPRAPW+EQEG+EYW
Sbjct: 20 GSHSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYW 79
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
D +T K+ + R NL ++ G +N S++ SH+F GC+ GS GR L + Q++YDG
Sbjct: 80 DEETQRVKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHVHWQYAYDG 139
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
+DYI LNEDL SWTA A++ +RKW+ E++++YLE CVEWLR+YLE G+++LQ
Sbjct: 140 EDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQ 199
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPK +VT HP DNKVTLRCWALGFYPKEISLTW+R+G+DQ+QD+E+VET G G
Sbjct: 200 RADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDG 258
Score = 56.2 bits (134), Expect(2) = 2e-94
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVP GEEQSYTC
Sbjct: 253 RPSGDGTFQKWAALVVPPGEEQSYTC 278
>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 306 bits (783), Expect(2) = 1e-93
Identities = 148/239 (61%), Positives = 177/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSL Y + VSRP G + VG++DDTQFVRF SDA N ++EPRA W++QEG EYW
Sbjct: 22 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIKQEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
DR+T I+KE ++ R L+ + G +N S++ SH+ + GC +G DG +LRGY Q +YDG
Sbjct: 82 DRETQISKETAQTYRVGLKTLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYRQDAYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DY+ LNEDLRSWTA T AQI +RKWEA AE R+YL+ CVE LRKYLE GKD LQ
Sbjct: 142 ADYLALNEDLRSWTAADTAAQITKRKWEAADEAEGERSYLQGLCVESLRKYLEMGKDTLQ 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPKTHVTRHP D VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVET G G
Sbjct: 202 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDG 260
Score = 56.2 bits (134), Expect(2) = 1e-93
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVP GEEQSYTC
Sbjct: 255 RPSGDGTFQKWAALVVPPGEEQSYTC 280
>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
Length = 361
Score = 304 bits (778), Expect(2) = 4e-93
Identities = 148/239 (61%), Positives = 175/239 (73%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSL YL VSRPG G + +VG +DDT VRF SDA PR EPRA W+EQEG EYW
Sbjct: 22 GPHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSDARKPRKEPRAWWIEQEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
D +T I+K++++ R NL + G +N S++ SH+ + GCDVG D +LR Y Q +YDG
Sbjct: 82 DEETRISKDNAQTLRGNLNTLRGYYNQSEARSHTIQSLFGCDVGPDRLLLRRYRQDAYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DY+ LNEDLRSWTA T AQI +RKWE VAEQ R+YL+ CVE L+KYLE G+D LQ
Sbjct: 142 ADYLALNEDLRSWTAADTAAQITKRKWETANVAEQERSYLQGLCVEGLQKYLEMGEDTLQ 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPKTHVTRHP D VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVET G G
Sbjct: 202 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDG 260
Score = 56.2 bits (134), Expect(2) = 4e-93
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVP GEEQSYTC
Sbjct: 255 RPSGDGTFQKWAALVVPPGEEQSYTC 280
>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 297 bits (761), Expect(2) = 3e-91
Identities = 141/239 (58%), Positives = 174/239 (72%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSL Y + VSRP G + +VG++DDTQFVRF + A NPR+EPR PW++QEG++YW
Sbjct: 22 GPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
D +T K++++ L + G +N S++ SH+ + GC +G DG +L GY Q +YDG
Sbjct: 82 DEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDLRSWTA AQI +RKWEA AE +R+YL+ CVE LR+YLE GKD LQ
Sbjct: 142 ADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQ 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPKTHVTRHP D VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVET G G
Sbjct: 202 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDG 260
Score = 56.2 bits (134), Expect(2) = 3e-91
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGTFQKWAALVVP GEEQSYTC
Sbjct: 255 RPSGDGTFQKWAALVVPPGEEQSYTC 280
>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
alpha chain-like [Sus scrofa].
Length = 374
Score = 177 bits (450), Expect(2) = 3e-51
Identities = 99/257 (38%), Positives = 146/257 (56%), Gaps = 1/257 (0%)
Frame = +2
Query: 122 DPRLEKGQTRPQPLPVIGSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANP 301
D +LEK +P P G+HSLRY ++ +S PG G + +VG++DD F+R+ D+
Sbjct: 29 DLKLEK---KPWPR---GTHSLRYHYLALSEPGPGLPQFLAVGYVDDQVFIRY--DSRRG 80
Query: 302 RVEPRAPWMEQEGREYWDRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDV 481
+ EP+APWM +YW+++T + +K + + ++G +N S S HS + GC++
Sbjct: 81 KAEPQAPWMAHMDAQYWEKETKKQRIWAKVQQVEMWTVMGYYNQS-SGMHSTQRMFGCEI 139
Query: 482 GSDGRILRGYEQFSYDGDDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQY-RAYLEI 658
DG G+ QF +DG D++ L+ + SW + VA +R WE E +Y +AY+E
Sbjct: 140 QEDGHST-GFWQFGFDGQDHLSLDLETLSWVSAEPVAVRTKRWWETERCYAEYDKAYVEG 198
Query: 659 ECVEWLRKYLEKGKDVLQRAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGE 838
C+ LRKYLE G R PP VT+H D TLRCWALGFYP++ISL+W +
Sbjct: 199 VCLTSLRKYLELGGQRFSRREPPTVRVTKHTAQDGGTTLRCWALGFYPQDISLSWWLGEK 258
Query: 839 DQTQDMELVETSLQGMG 889
+ T E VET G G
Sbjct: 259 ELTSKTEYVETRPSGDG 275
Score = 42.7 bits (99), Expect(2) = 3e-51
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+PSGDGT+Q W A VP+GEE YTC
Sbjct: 270 RPSGDGTYQTWLATQVPAGEEIQYTC 295
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,319,158
Number of extensions: 857283
Number of successful extensions: 7045
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 6561
Number of HSP's successfully gapped: 44
Length of query: 316
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,879,129
Effective search space: 1926770993
Effective search space used: 1926770993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007790
(949 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020379.1| MHC class I family member [Mus musculus]. 318 4e-95
Alignment gi|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alp... 317 4e-95
Alignment gi|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus]. 315 3e-94
Alignment gi|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 a... 311 4e-93
Alignment gi|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alph... 310 9e-93
Alignment gi|XP_003085233.1| PREDICTED: h-2 class I histocompatibility an... 310 9e-93
Alignment gi|XP_003085228.1| PREDICTED: h-2 class I histocompatibility an... 310 9e-93
Alignment gi|NP_001185489.1| H-2 class I histocompatibility antigen, Q7 a... 310 9e-93
Alignment gi|XP_003085234.1| PREDICTED: h-2 class I histocompatibility an... 310 9e-93
Alignment gi|XP_003085229.1| PREDICTED: h-2 class I histocompatibility an... 310 9e-93
>ref|NP_001020379.1| MHC class I family member [Mus musculus].
Length = 382
Score = 318 bits (814), Expect(2) = 4e-95
Identities = 149/239 (62%), Positives = 181/239 (75%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHS+RY VSRPG G + SVG++DDTQFVRF DA NPR EP APWMEQEG EYW
Sbjct: 22 GSHSMRYFETAVSRPGLGEPRFISVGYVDDTQFVRFDGDAENPRYEPWAPWMEQEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+R+T IAK++ ++ R +LR ++ +N S+ SH+F +SGCD+GSDGR+LRGY QF+Y+G
Sbjct: 82 ERETQIAKDNVQSFRGSLRNLLLYYNQSEGGSHTFQRLSGCDLGSDGRLLRGYLQFAYEG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDL++WTA A I RRKWE G AE Y+AYLE ECVEWLR+YLE+GK+ L
Sbjct: 142 QDYIALNEDLKTWTAADMAALITRRKWEQAGAAELYKAYLEGECVEWLRRYLERGKETLL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
R PPK HVT HP + VTLRCWALGFYP +I+LTWQ +GE+ TQDMELVET G G
Sbjct: 202 RTDPPKAHVTHHPRPEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDG 260
Score = 49.3 bits (116), Expect(2) = 4e-95
Identities = 19/26 (73%), Positives = 24/26 (92%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWA++VVP G+EQ YTC
Sbjct: 255 RPAGDGTFQKWASVVVPLGKEQKYTC 280
>ref|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor
[Mus musculus].
Length = 325
Score = 317 bits (813), Expect(2) = 4e-95
Identities = 149/239 (62%), Positives = 177/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHS+RY VSRPG G + VG++DDTQFVRF SDA PR+EPRAPWMEQEG EYW
Sbjct: 25 GSHSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQEGPEYW 84
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+R+T AK + ++ +LR ++G +N S+S SH+ W+ GC VGSDGR LRGY Q++YDG
Sbjct: 85 ERETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQYAYDG 144
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDL++WTA A I RRKWE G AE YRAYLE ECVEWL +YLE GK+ L
Sbjct: 145 RDYIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAYLEAECVEWLLRYLELGKETLL 204
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
R PPKTHVT HP + VTLRCWALGFYP +I+LTWQ +GE+ TQDMELVET G G
Sbjct: 205 RTDPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDG 263
Score = 49.7 bits (117), Expect(2) = 4e-95
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWA++VVP G+EQ+YTC
Sbjct: 258 RPAGDGTFQKWASVVVPLGKEQNYTC 283
>ref|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].
Length = 368
Score = 315 bits (806), Expect(2) = 3e-94
Identities = 147/239 (61%), Positives = 178/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HS+RY VSRPG G + SVG++DDTQFVRF DA NPR+EPRAPWMEQEG EYW
Sbjct: 26 GPHSMRYFETAVSRPGLGEPWFISVGYVDDTQFVRFDGDAENPRMEPRAPWMEQEGPEYW 85
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+R+T IAK H + + +LR ++ +N S SH+F + GCD+GSDGR+LRGY QF+YDG
Sbjct: 86 ERETQIAKGHEQGFQGSLRNLLHYYNQSAGGSHTFQRMYGCDLGSDGRLLRGYWQFAYDG 145
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LN+DL++WTA AQI RR+WE GVAE RAYLE C+EWLR+YLE GK+ L
Sbjct: 146 SDYIALNQDLKTWTAADLAAQITRRRWEQGGVAETLRAYLEDPCLEWLRRYLELGKETLL 205
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
R PPK HVT HP ++ VTLRCWALGFYP +I+LTWQ +GE+ TQDMELVET G G
Sbjct: 206 RTDPPKVHVTHHPRSEDDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDG 264
Score = 49.7 bits (117), Expect(2) = 3e-94
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWA++VVP G+EQ+YTC
Sbjct: 259 RPAGDGTFQKWASVVVPLGKEQNYTC 284
>ref|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 alpha chain [Mus
musculus].
Length = 334
Score = 311 bits (796), Expect(2) = 4e-93
Identities = 146/239 (61%), Positives = 178/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSL+Y H VSRPG G + SVG++DDTQFVRF SDA NPR+EPRA WMEQEG EYW
Sbjct: 22 GQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+R+T IAK H ++ R +LR +N S+ SH+ W+ GCD+GSDGR+LRGY QF+Y+G
Sbjct: 82 ERETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDL++WTA+ AQI RRKWE G+AE+ +AYLE C++ LR+YLE GK+ L
Sbjct: 142 RDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLELGKETLL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
R PPK HVT HP VTLRCWALGFYP +I+LTWQ +GE+ TQDMELVET G G
Sbjct: 202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDG 260
Score = 49.7 bits (117), Expect(2) = 4e-93
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWA++VVP G+EQ+YTC
Sbjct: 255 RPAGDGTFQKWASVVVPLGKEQNYTC 280
>ref|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alpha chain isoform 1
precursor [Mus musculus].
Length = 334
Score = 310 bits (793), Expect(2) = 9e-93
Identities = 145/239 (60%), Positives = 178/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSL+Y H VSRPG G + SVG++DDTQFVRF SDA NPR+EPRA WMEQEG EYW
Sbjct: 22 GQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+R+T IAK H ++ R +LR +N S+ SH+ W+ GCD+GSDGR+LRGY QF+Y+G
Sbjct: 82 ERETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDL++WTA+ AQI RRKWE G+AE+ +AYLE C++ LR+YL+ GK+ L
Sbjct: 142 RDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
R PPK HVT HP VTLRCWALGFYP +I+LTWQ +GE+ TQDMELVET G G
Sbjct: 202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDG 260
Score = 49.7 bits (117), Expect(2) = 9e-93
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWA++VVP G+EQ+YTC
Sbjct: 255 RPAGDGTFQKWASVVVPLGKEQNYTC 280
>ref|XP_003085233.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
chain-like isoform 1 [Mus musculus].
Length = 334
Score = 310 bits (793), Expect(2) = 9e-93
Identities = 145/239 (60%), Positives = 178/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSL+Y H VSRPG G + SVG++DDTQFVRF SDA NPR+EPRA WMEQEG EYW
Sbjct: 22 GQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+R+T IAK H ++ R +LR +N S+ SH+ W+ GCD+GSDGR+LRGY QF+Y+G
Sbjct: 82 ERETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDL++WTA+ AQI RRKWE G+AE+ +AYLE C++ LR+YL+ GK+ L
Sbjct: 142 RDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
R PPK HVT HP VTLRCWALGFYP +I+LTWQ +GE+ TQDMELVET G G
Sbjct: 202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDG 260
Score = 49.7 bits (117), Expect(2) = 9e-93
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWA++VVP G+EQ+YTC
Sbjct: 255 RPAGDGTFQKWASVVVPLGKEQNYTC 280
>ref|XP_003085228.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
chain-like isoform 1 [Mus musculus].
Length = 330
Score = 310 bits (793), Expect(2) = 9e-93
Identities = 145/239 (60%), Positives = 178/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSL+Y H VSRPG G + SVG++DDTQFVRF SDA NPR+EPRA WMEQEG EYW
Sbjct: 18 GQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYW 77
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+R+T IAK H ++ R +LR +N S+ SH+ W+ GCD+GSDGR+LRGY QF+Y+G
Sbjct: 78 ERETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEG 137
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDL++WTA+ AQI RRKWE G+AE+ +AYLE C++ LR+YL+ GK+ L
Sbjct: 138 RDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLL 197
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
R PPK HVT HP VTLRCWALGFYP +I+LTWQ +GE+ TQDMELVET G G
Sbjct: 198 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDG 256
Score = 49.7 bits (117), Expect(2) = 9e-93
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWA++VVP G+EQ+YTC
Sbjct: 251 RPAGDGTFQKWASVVVPLGKEQNYTC 276
>ref|NP_001185489.1| H-2 class I histocompatibility antigen, Q7 alpha chain isoform 2
precursor [Mus musculus].
Length = 310
Score = 310 bits (793), Expect(2) = 9e-93
Identities = 145/239 (60%), Positives = 178/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSL+Y H VSRPG G + SVG++DDTQFVRF SDA NPR+EPRA WMEQEG EYW
Sbjct: 22 GQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+R+T IAK H ++ R +LR +N S+ SH+ W+ GCD+GSDGR+LRGY QF+Y+G
Sbjct: 82 ERETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDL++WTA+ AQI RRKWE G+AE+ +AYLE C++ LR+YL+ GK+ L
Sbjct: 142 RDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
R PPK HVT HP VTLRCWALGFYP +I+LTWQ +GE+ TQDMELVET G G
Sbjct: 202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDG 260
Score = 49.7 bits (117), Expect(2) = 9e-93
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWA++VVP G+EQ+YTC
Sbjct: 255 RPAGDGTFQKWASVVVPLGKEQNYTC 280
>ref|XP_003085234.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
chain-like isoform 2 [Mus musculus].
Length = 310
Score = 310 bits (793), Expect(2) = 9e-93
Identities = 145/239 (60%), Positives = 178/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSL+Y H VSRPG G + SVG++DDTQFVRF SDA NPR+EPRA WMEQEG EYW
Sbjct: 22 GQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+R+T IAK H ++ R +LR +N S+ SH+ W+ GCD+GSDGR+LRGY QF+Y+G
Sbjct: 82 ERETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDL++WTA+ AQI RRKWE G+AE+ +AYLE C++ LR+YL+ GK+ L
Sbjct: 142 RDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
R PPK HVT HP VTLRCWALGFYP +I+LTWQ +GE+ TQDMELVET G G
Sbjct: 202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDG 260
Score = 49.7 bits (117), Expect(2) = 9e-93
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWA++VVP G+EQ+YTC
Sbjct: 255 RPAGDGTFQKWASVVVPLGKEQNYTC 280
>ref|XP_003085229.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
chain-like isoform 2 [Mus musculus].
Length = 310
Score = 310 bits (793), Expect(2) = 9e-93
Identities = 145/239 (60%), Positives = 178/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
G HSL+Y H VSRPG G + SVG++DDTQFVRF SDA NPR+EPRA WMEQEG EYW
Sbjct: 22 GQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+R+T IAK H ++ R +LR +N S+ SH+ W+ GCD+GSDGR+LRGY QF+Y+G
Sbjct: 82 ERETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDL++WTA+ AQI RRKWE G+AE+ +AYLE C++ LR+YL+ GK+ L
Sbjct: 142 RDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
R PPK HVT HP VTLRCWALGFYP +I+LTWQ +GE+ TQDMELVET G G
Sbjct: 202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDG 260
Score = 49.7 bits (117), Expect(2) = 9e-93
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWA++VVP G+EQ+YTC
Sbjct: 255 RPAGDGTFQKWASVVVPLGKEQNYTC 280
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,789,828
Number of extensions: 1078852
Number of successful extensions: 7825
Number of sequences better than 1.0e-05: 118
Number of HSP's gapped: 7447
Number of HSP's successfully gapped: 229
Length of query: 316
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 215
Effective length of database: 12,583,923
Effective search space: 2705543445
Effective search space used: 2705543445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007790
(949 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c... 337 e-102
Alignment gi|NP_005505.2| major histocompatibility complex, class I, B pr... 338 e-101
Alignment gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al... 328 4e-99
Alignment gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1... 326 2e-98
Alignment gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp... 322 1e-97
Alignment gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c... 320 3e-97
Alignment gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ... 318 2e-96
Alignment gi|NP_001091949.1| HLA class I histocompatibility antigen, alph... 308 8e-93
Alignment gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c... 308 8e-93
Alignment gi|NP_001091948.1| HLA class I histocompatibility antigen, alph... 222 3e-58
>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor
[Homo sapiens].
Length = 338
Score = 337 bits (864), Expect(2) = e-102
Identities = 164/288 (56%), Positives = 196/288 (68%)
Frame = +2
Query: 26 MQVTEPRTXXXXXXXXXXXTETWAGHLHHGPKDPRLEKGQTRPQPLPVIGSHSLRYLHIL 205
M V PRT TETWAG SHS+RY
Sbjct: 1 MVVMAPRTLFLLLSGALTLTETWAG-------------------------SHSMRYFSAA 35
Query: 206 VSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDRQTDIAKEHS 385
VSRPG G + ++G++DDTQFVRF SD+A PR+EPRAPW+EQEG EYW+ +T K H+
Sbjct: 36 VSRPGRGEPRFIAMGYVDDTQFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHA 95
Query: 386 KASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDGDDYIVLNEDLR 565
+ R NL+ + G +N S++ SH+ W+ GCD+GSDGR+LRGYEQ++YDG DY+ LNEDLR
Sbjct: 96 QTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLR 155
Query: 566 SWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRAVPPKTHVTR 745
SWTA T AQI +RK EA VAEQ RAYLE CVEWL +YLE GK++LQRA PPKTHVT
Sbjct: 156 SWTAADTAAQISKRKCEAANVAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTH 215
Query: 746 HPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
HP +D + TLRCWALGFYP EI LTWQRDGEDQTQD+ELVET G G
Sbjct: 216 HPVFDYEATLRCWALGFYPAEIILTWQRDGEDQTQDVELVETRPAGDG 263
Score = 53.9 bits (128), Expect(2) = e-102
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWAA+VVPSGEEQ YTC
Sbjct: 258 RPAGDGTFQKWAAVVVPSGEEQRYTC 283
>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
sapiens].
Length = 362
Score = 338 bits (866), Expect(2) = e-101
Identities = 168/286 (58%), Positives = 195/286 (68%)
Frame = +2
Query: 26 MQVTEPRTXXXXXXXXXXXTETWAGHLHHGPKDPRLEKGQTRPQPLPVIGSHSLRYLHIL 205
M V PRT TETWAG SHS+RY +
Sbjct: 1 MLVMAPRTVLLLLSAALALTETWAG-------------------------SHSMRYFYTS 35
Query: 206 VSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDRQTDIAKEHS 385
VSRPG G + SVG++DDTQFVRF SDAA+PR EPRAPW+EQEG EYWDR T I K +
Sbjct: 36 VSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQA 95
Query: 386 KASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDGDDYIVLNEDLR 565
+ R +LR + G +N S++ SH+ + GCDVG DGR+LRG++Q++YDG DYI LNEDLR
Sbjct: 96 QTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLR 155
Query: 566 SWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRAVPPKTHVTR 745
SWTA T AQI +RKWEA AEQ RAYLE ECVEWLR+YLE GKD L+RA PPKTHVT
Sbjct: 156 SWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTH 215
Query: 746 HPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQG 883
HP D++ TLRCWALGFYP EI+LTWQRDGEDQTQD ELVET G
Sbjct: 216 HPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAG 261
Score = 50.8 bits (120), Expect(2) = e-101
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GD TFQKWAA+VVPSGEEQ YTC
Sbjct: 258 RPAGDRTFQKWAAVVVPSGEEQRYTC 283
>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 328 bits (841), Expect(2) = 4e-99
Identities = 157/238 (65%), Positives = 182/238 (76%)
Frame = +2
Query: 176 SHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWD 355
SHS+RY VSRPG G + SVG++DDTQFVRF SDAA+PR EPRAPW+EQEG EYWD
Sbjct: 26 SHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWD 85
Query: 356 RQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDGD 535
R+T K ++A R +LR + G +N S+ SH+ +SGCD+G DGR+LRGY+Q +YDG
Sbjct: 86 RETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQRMSGCDLGPDGRLLRGYDQSAYDGK 145
Query: 536 DYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQR 715
DYI LNEDLRSWTA T AQI +RK EA AEQ RAYLE CVEWLR+YLE GK+ LQR
Sbjct: 146 DYIALNEDLRSWTAADTAAQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQR 205
Query: 716 AVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
A PPKTHVT HP D++ TLRCWALGFYP EI+LTWQRDGEDQTQD ELVET G G
Sbjct: 206 AEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDG 263
Score = 52.8 bits (125), Expect(2) = 4e-99
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWAA+VVPSG+EQ YTC
Sbjct: 258 RPAGDGTFQKWAAVVVPSGQEQRYTC 283
>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 326 bits (835), Expect(2) = 2e-98
Identities = 156/238 (65%), Positives = 181/238 (76%)
Frame = +2
Query: 176 SHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWD 355
SHS+RY VSRPG G + SVG++DDTQFVRF SDAA+PR EPRAPW+EQEG EYWD
Sbjct: 26 SHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWD 85
Query: 356 RQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDGD 535
R+T K ++A R +LR + G +N S+ SH+ + GCD+G DGR+LRGY+Q +YDG
Sbjct: 86 RETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQRMYGCDLGPDGRLLRGYDQSAYDGK 145
Query: 536 DYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQR 715
DYI LNEDLRSWTA T AQI +RK EA AEQ RAYLE CVEWLR+YLE GK+ LQR
Sbjct: 146 DYIALNEDLRSWTAADTAAQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQR 205
Query: 716 AVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
A PPKTHVT HP D++ TLRCWALGFYP EI+LTWQRDGEDQTQD ELVET G G
Sbjct: 206 AEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDG 263
Score = 52.8 bits (125), Expect(2) = 2e-98
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWAA+VVPSG+EQ YTC
Sbjct: 258 RPAGDGTFQKWAAVVVPSGQEQRYTC 283
>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 322 bits (825), Expect(2) = 1e-97
Identities = 161/288 (55%), Positives = 189/288 (65%)
Frame = +2
Query: 26 MQVTEPRTXXXXXXXXXXXTETWAGHLHHGPKDPRLEKGQTRPQPLPVIGSHSLRYLHIL 205
M V PRT T+TWAG SHS+RY
Sbjct: 1 MAVMAPRTLLLLLSGALALTQTWAG-------------------------SHSMRYFFTS 35
Query: 206 VSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDRQTDIAKEHS 385
VSRPG G + +VG++DDTQFVRF SDAA+ R+EPRAPW+EQEG EYWD++T K S
Sbjct: 36 VSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQS 95
Query: 386 KASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDGDDYIVLNEDLR 565
+ R +L + G +N S++ SH+ + GCDVGSDGR LRGY Q +YDG DYI LNEDLR
Sbjct: 96 QTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLR 155
Query: 566 SWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRAVPPKTHVTR 745
SWTA AQI +RKWEA AEQ RAYL+ CVEWLR+YLE GK+ LQR PPKTH+T
Sbjct: 156 SWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTH 215
Query: 746 HPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
HP D++ TLRCWALGFYP EI+LTWQRDGEDQTQD ELVET G G
Sbjct: 216 HPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDG 263
Score = 53.9 bits (128), Expect(2) = 1e-97
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWAA+VVPSGEEQ YTC
Sbjct: 258 RPAGDGTFQKWAAVVVPSGEEQRYTC 283
>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor
[Homo sapiens].
Length = 358
Score = 320 bits (821), Expect(2) = 3e-97
Identities = 149/239 (62%), Positives = 178/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSL+Y H VSRPG G + SVG++DDTQFVRF +DAA+PR+ PRAPWMEQEG EYW
Sbjct: 22 GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
DR+T A++ ++ R NLR + G +N S++ SH+ W+ GC++G DGR LRGYEQF+YDG
Sbjct: 82 DRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DY+ LNEDLRSWTA+ T AQI +K AE RAYLE CVEWL KYLEKGK+ L
Sbjct: 142 KDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLL 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
PPKTHVT HP D++ TLRCWALGFYP EI+LTWQ+DGE TQD ELVET G G
Sbjct: 202 HLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDG 260
Score = 53.9 bits (128), Expect(2) = 3e-97
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWAA+VVPSGEEQ YTC
Sbjct: 255 RPAGDGTFQKWAAVVVPSGEEQRYTC 280
>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 318 bits (815), Expect(2) = 2e-96
Identities = 159/288 (55%), Positives = 187/288 (64%)
Frame = +2
Query: 26 MQVTEPRTXXXXXXXXXXXTETWAGHLHHGPKDPRLEKGQTRPQPLPVIGSHSLRYLHIL 205
M V PRT T+TWAG SHS+RY
Sbjct: 1 MAVMAPRTLLLLLSGALALTQTWAG-------------------------SHSMRYFFTS 35
Query: 206 VSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDRQTDIAKEHS 385
VSRPG G + +VG++DDTQFVRF SDAA+ ++EPRAPW+EQEG EYWD++T K HS
Sbjct: 36 VSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHS 95
Query: 386 KASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDGDDYIVLNEDLR 565
+ R+NL + G +N S+ SH+ + GCDVG DGR LRGY Q +YDG DYI LNEDLR
Sbjct: 96 QTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLR 155
Query: 566 SWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRAVPPKTHVTR 745
SWTA AQI +RKWEA AEQ R YLE CV+ LR+YLE GK+ LQR PPKTH+T
Sbjct: 156 SWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTH 215
Query: 746 HPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
HP D++ TLRCWALGFYP EI+LTWQRDGEDQTQD ELVET G G
Sbjct: 216 HPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDG 263
Score = 53.9 bits (128), Expect(2) = 2e-96
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWAA+VVPSGEEQ YTC
Sbjct: 258 RPAGDGTFQKWAAVVVPSGEEQRYTC 283
>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
precursor [Homo sapiens].
Length = 442
Score = 308 bits (788), Expect(2) = 8e-93
Identities = 146/239 (61%), Positives = 179/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSLRY VSRPG G Y +V ++DDTQF+RF SDAA PR+EPR PW+EQEG +YW
Sbjct: 22 GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+ T AK +++ R LR ++ +N S++ SH+ ++GCD+G DGR+LRGY Q +YDG
Sbjct: 82 EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDLRSWTA TVAQI +R +EAE AE++R YLE EC+E LR+YLE GK+ LQ
Sbjct: 142 KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPK HV HP D++ TLRCWALGFYP EI+LTWQRDGE+QTQD ELVET G G
Sbjct: 202 RADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDG 260
Score = 52.0 bits (123), Expect(2) = 8e-93
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWAA+VVP GEEQ YTC
Sbjct: 255 RPAGDGTFQKWAAVVVPPGEEQRYTC 280
>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
precursor [Homo sapiens].
Length = 346
Score = 308 bits (788), Expect(2) = 8e-93
Identities = 146/239 (61%), Positives = 179/239 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSLRY VSRPG G Y +V ++DDTQF+RF SDAA PR+EPR PW+EQEG +YW
Sbjct: 22 GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+ T AK +++ R LR ++ +N S++ SH+ ++GCD+G DGR+LRGY Q +YDG
Sbjct: 82 EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDLRSWTA TVAQI +R +EAE AE++R YLE EC+E LR+YLE GK+ LQ
Sbjct: 142 KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201
Query: 713 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETSLQGMG 889
RA PPK HV HP D++ TLRCWALGFYP EI+LTWQRDGE+QTQD ELVET G G
Sbjct: 202 RADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDG 260
Score = 52.0 bits (123), Expect(2) = 8e-93
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +1
Query: 871 QPSGDGTFQKWAALVVPSGEEQSYTC 948
+P+GDGTFQKWAA+VVP GEEQ YTC
Sbjct: 255 RPAGDGTFQKWAAVVVPPGEEQRYTC 280
>ref|NP_001091948.1| HLA class I histocompatibility antigen, alpha chain F isoform 3
precursor [Homo sapiens].
Length = 254
Score = 222 bits (566), Expect = 3e-58
Identities = 106/182 (58%), Positives = 135/182 (74%)
Frame = +2
Query: 173 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 352
GSHSLRY VSRPG G Y +V ++DDTQF+RF SDAA PR+EPR PW+EQEG +YW
Sbjct: 22 GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81
Query: 353 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSDGRILRGYEQFSYDG 532
+ T AK +++ R LR ++ +N S++ SH+ ++GCD+G DGR+LRGY Q +YDG
Sbjct: 82 EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141
Query: 533 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 712
DYI LNEDLRSWTA TVAQI +R +EAE AE++R YLE EC+E LR+YLE GK+ LQ
Sbjct: 142 KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201
Query: 713 RA 718
RA
Sbjct: 202 RA 203
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,527,566
Number of extensions: 1319717
Number of successful extensions: 10048
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 9521
Number of HSP's successfully gapped: 51
Length of query: 316
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,934,836
Effective search space: 3196054904
Effective search space used: 3196054904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007790
(949 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 690 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 690 bits (348), Expect = 0.0
Identities = 348/348 (100%)
Strand = Plus / Plus
Query: 96 caggccaccttcaccacggacccaaggacccgcgtctggagaagggtcagacccggcctc 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27603125 caggccaccttcaccacggacccaaggacccgcgtctggagaagggtcagacccggcctc 27603184
Query: 156 agcccctccctgttataggatcccactcgctaagatacctccatattttggtatcccggc 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27603185 agcccctccctgttataggatcccactcgctaagatacctccatattttggtatcccggc 27603244
Query: 216 ccggccacggtagtgacctttacagctctgtcggtttcttggacgacacgcagttcgtac 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27603245 ccggccacggtagtgacctttacagctctgtcggtttcttggacgacacgcagttcgtac 27603304
Query: 276 ggttcagcagcgatgccgcgaatccaagggtggagcctcgggcgccgtggatggagcagg 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27603305 ggttcagcagcgatgccgcgaatccaagggtggagcctcgggcgccgtggatggagcagg 27603364
Query: 336 aggggcgggaatattgggatcgtcagactgatatagccaaagaacattcgaaggcttcaa 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27603365 aggggcgggaatattgggatcgtcagactgatatagccaaagaacattcgaaggcttcaa 27603424
Query: 396 gatcgaacctgcgggtgatcattggcaaccacaaccatagccagtcgg 443
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27603425 gatcgaacctgcgggtgatcattggcaaccacaaccatagccagtcgg 27603472
Score = 549 bits (277), Expect = e-154
Identities = 277/277 (100%)
Strand = Plus / Plus
Query: 443 gagtcgcacagctttctttgggtatccggctgcgacgtgggatccgacgggcgcatcctt 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27603718 gagtcgcacagctttctttgggtatccggctgcgacgtgggatccgacgggcgcatcctt 27603777
Query: 503 cgagggtacgagcagttctcctacgacggcgacgattacatcgtcctgaatgaagacctg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27603778 cgagggtacgagcagttctcctacgacggcgacgattacatcgtcctgaatgaagacctg 27603837
Query: 563 cgctcctggaccgcgatcagtacagtggctcagatcatccggcgcaagtgggaggcggag 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27603838 cgctcctggaccgcgatcagtacagtggctcagatcatccggcgcaagtgggaggcggag 27603897
Query: 623 ggagtagctgaacagtatcgggcatacttggagatcgagtgtgtggagtggctccgcaag 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27603898 ggagtagctgaacagtatcgggcatacttggagatcgagtgtgtggagtggctccgcaag 27603957
Query: 683 tacctcgagaaggggaaggacgtgctgcagcgcgcag 719
|||||||||||||||||||||||||||||||||||||
Sbjct: 27603958 tacctcgagaaggggaaggacgtgctgcagcgcgcag 27603994
Score = 416 bits (210), Expect = e-114
Identities = 229/234 (97%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 717 cagttcctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaa 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27604566 cagttcctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaa 27604625
Query: 777 gatgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgtgatgggg 836
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 27604626 gatgctgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggc 27604685
Query: 837 aggaccagacccaggacatggagctcgtggagacca-gccttcaggggatgggaccttcc 895
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 27604686 aggaccagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttcc 27604745
Query: 896 agaagtgggcggccctggtggtgccttctggagaggagcagagctacacctgcc 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27604746 agaagtgggcggccctggtggtgccttctggagaggagcagagctacacctgcc 27604799
Score = 289 bits (146), Expect = 1e-75
Identities = 210/230 (91%), Gaps = 1/230 (0%)
Strand = Plus / Plus
Query: 721 tcctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatg 780
|||||||||||| |||||||||||||||||| || ||||||||||||||| | || ||
Sbjct: 27616066 tcctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttgaggtg 27616125
Query: 781 ctgggccctgggcttctaccctaaggagatctccctgacctggcagcgtgatggggagga 840
||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct: 27616126 ctgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcagga 27616185
Query: 841 ccagacccaggacatggagctcgtggagacca-gccttcaggggatgggaccttccagaa 899
||||| ||||||| ||||| | ||||| |||| ||| |||||||||||||||||||||||
Sbjct: 27616186 ccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaa 27616245
Query: 900 gtgggcggccctggtggtgccttctggagaggagcagagctacacctgcc 949
|||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 27616246 gtgggcggccctggtggtgcctcctggagaggagcagagctacacctgcc 27616295
Score = 270 bits (136), Expect = 1e-69
Identities = 197/216 (91%), Gaps = 1/216 (0%)
Strand = Plus / Minus
Query: 735 atgtgacccgccaccccttctatgacaataaagtcactctaagatgctgggccctgggct 794
|||||||| |||||||| || ||||||||||||||| || || ||||||||||||||||
Sbjct: 27628590 atgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgggccctgggct 27628531
Query: 795 tctaccctaaggagatctccctgacctggcagcgtgatggggaggaccagacccaggaca 854
|||||||||||||||||||||||||||||| ||| || ||| ||||||||| |||||||
Sbjct: 27628530 tctaccctaaggagatctccctgacctggcggcgggaggggcaggaccagagccaggacg 27628471
Query: 855 tggagctcgtggagacca-gccttcaggggatgggaccttccagaagtgggcggccctgg 913
||||| | ||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 27628470 tggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgggcggccctgg 27628411
Query: 914 tggtgccttctggagaggagcagagctacacctgcc 949
|||||||| |||||||||||||||||||||||||||
Sbjct: 27628410 tggtgcctcctggagaggagcagagctacacctgcc 27628375
Score = 264 bits (133), Expect = 8e-68
Identities = 206/229 (89%), Gaps = 1/229 (0%)
Strand = Plus / Minus
Query: 722 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 781
||||||||||| |||||||||||||||||| || |||| ||||| || || |||
Sbjct: 24643492 cctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctgaggtgc 24643433
Query: 782 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgtgatggggaggac 841
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct: 24643432 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 24643373
Query: 842 cagacccaggacatggagctcgtggagaccag-ccttcaggggatgggaccttccagaag 900
|||| ||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 24643372 cagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 24643313
Query: 901 tgggcggccctggtggtgccttctggagaggagcagagctacacctgcc 949
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 24643312 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgcc 24643264
Score = 264 bits (133), Expect = 8e-68
Identities = 207/229 (90%), Gaps = 2/229 (0%)
Strand = Plus / Minus
Query: 722 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 781
||||||||||| |||||||||||||||||| || |||| | ||||| | || |||
Sbjct: 24657268 cctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttgaggtgc 24657209
Query: 782 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgtgatggggaggac 841
||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 24657208 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggcaggac 24657149
Query: 842 cagacccaggacatggagctcgtggagacca-gccttcaggggatgggaccttccagaag 900
|||| ||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||||
Sbjct: 24657148 cagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttccagaag 24657090
Query: 901 tgggcggccctggtggtgccttctggagaggagcagagctacacctgcc 949
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 24657089 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgcc 24657041
Score = 264 bits (133), Expect = 8e-68
Identities = 206/229 (89%), Gaps = 1/229 (0%)
Strand = Plus / Minus
Query: 722 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 781
||||||||||| |||||||||||||||||| || |||| ||||| | || |||
Sbjct: 24685328 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 24685269
Query: 782 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgtgatggggaggac 841
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct: 24685268 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggac 24685209
Query: 842 cagacccaggacatggagctcgtggagacca-gccttcaggggatgggaccttccagaag 900
|||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct: 24685208 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 24685149
Query: 901 tgggcggccctggtggtgccttctggagaggagcagagctacacctgcc 949
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 24685148 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgcc 24685100
Score = 256 bits (129), Expect = 2e-65
Identities = 205/229 (89%), Gaps = 1/229 (0%)
Strand = Plus / Minus
Query: 722 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 781
||||||||||| |||||||||||||||||| || |||| ||||| | || |||
Sbjct: 24706181 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 24706122
Query: 782 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgtgatggggaggac 841
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct: 24706121 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggac 24706062
Query: 842 cagacccaggacatggagctcgtggagaccag-ccttcaggggatgggaccttccagaag 900
|||| ||||||| ||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 24706061 cagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttccagaag 24706002
Query: 901 tgggcggccctggtggtgccttctggagaggagcagagctacacctgcc 949
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 24706001 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgcc 24705953
Score = 256 bits (129), Expect = 2e-65
Identities = 205/229 (89%), Gaps = 1/229 (0%)
Strand = Plus / Minus
Query: 722 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 781
||||||||||| |||||||||||||||||| || |||| ||||| | || |||
Sbjct: 26675873 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 26675814
Query: 782 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgtgatggggaggac 841
||||||||||||||||||||||||||||||||||||| ||||||||| || || |||||
Sbjct: 26675813 tgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggccaggac 26675754
Query: 842 cagacccaggacatggagctcgtggagaccag-ccttcaggggatgggaccttccagaag 900
|||| ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 26675753 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 26675694
Query: 901 tgggcggccctggtggtgccttctggagaggagcagagctacacctgcc 949
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 26675693 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgcc 26675645
Score = 254 bits (128), Expect = 8e-65
Identities = 162/172 (94%), Gaps = 1/172 (0%)
Strand = Plus / Minus
Query: 779 tgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgtgatggggag 838
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct: 24722339 tgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaa 24722280
Query: 839 gaccagacccaggacatggagctcgtggagaccag-ccttcaggggatgggaccttccag 897
||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct: 24722279 gaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccag 24722220
Query: 898 aagtgggcggccctggtggtgccttctggagaggagcagagctacacctgcc 949
|||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 24722219 aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgcc 24722168
Score = 248 bits (125), Expect = 5e-63
Identities = 204/229 (89%), Gaps = 1/229 (0%)
Strand = Plus / Minus
Query: 722 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 781
||||||||||| |||||||||||||||||| || |||| ||||| | || |||
Sbjct: 24749843 cctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttgaggtgc 24749784
Query: 782 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgtgatggggaggac 841
||||| ||||||||| ||||||||||||||||||||||||||||||| || || |||||
Sbjct: 24749783 tgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggccaggac 24749724
Query: 842 cagacccaggacatggagctcgtggagaccag-ccttcaggggatgggaccttccagaag 900
|||| ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 24749723 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 24749664
Query: 901 tgggcggccctggtggtgccttctggagaggagcagagctacacctgcc 949
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 24749663 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgcc 24749615
Score = 188 bits (95), Expect = 4e-45
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 1 ctcagatccgccacagacgggaaggatgcaggtcacggagcctcgaaccctcctgctggt 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 27602797 ctcagatccgccacagacaggaaggatgcaggtcacggagcctcgaaccctcctgctggt 27602856
Query: 61 gctctcggggtccctggccctgaccgagacctgggcagg 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 27602857 gctctcggggtccctggccctgaccgagacctgggcagg 27602895
Score = 105 bits (53), Expect = 4e-20
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 255 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 314
||||||||||||||||||| |||||| |||||| ||| ||||||| || ||||||| |
Sbjct: 24644778 tggacgacacgcagttcgtgcggttcgacagcgacgccccgaatccgcggatggagccgc 24644719
Query: 315 gggcgccgtggatggagcaggaggggcgggaatattgggat 355
||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 24644718 gggcgccgtggatagagcaggaggggcaggagtattgggat 24644678
Score = 101 bits (51), Expect = 7e-19
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 258 acgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctcggg 317
|||||||||||||||| |||||| |||||| ||| ||||||| || ||||||| ||||
Sbjct: 24707464 acgacacgcagttcgtgcggttcgacagcgacgccccgaatccgcggatggagccgcggg 24707405
Query: 318 cgccgtggatggagcaggaggggcgggaatattgggatc 356
|||||||||||||||||||||||| ||| | ||||||||
Sbjct: 24707404 cgccgtggatggagcaggaggggcaggactgttgggatc 24707366
Score = 97.6 bits (49), Expect = 1e-17
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 255 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 314
||||||||||||||||||| |||||| |||||| ||| ||||||| || ||||||| |
Sbjct: 24751145 tggacgacacgcagttcgtgcggttcgacagcgacgccccgaatccgcggatggagccgc 24751086
Query: 315 gggcgccgtggatggagcaggaggggcgggaatattgggat 355
||||||||||||| |||||||||||| ||| |||||||||
Sbjct: 24751085 gggcgccgtggatacagcaggaggggcaggagtattgggat 24751045
Score = 97.6 bits (49), Expect = 1e-17
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 255 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 314
||||||||||||||||||| |||||| |||||| || |||||| ||| ||||||| |
Sbjct: 27210390 tggacgacacgcagttcgtgcggttcgacagcgaagctcagaatccgaggatggagccgc 27210331
Query: 315 gggcgccgtggatggagcaggaggggcgggaatattgggat 355
||||||||||| ||||||||||||||| ||| |||||||||
Sbjct: 27210330 gggcgccgtgggtggagcaggaggggcaggagtattgggat 27210290
Score = 97.6 bits (49), Expect = 1e-17
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 255 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 314
||||||||||||||||||| |||||| |||||| || |||||| ||| ||||||| |
Sbjct: 27629916 tggacgacacgcagttcgtgcggttcgacagcgaagctcagaatccgaggatggagccgc 27629857
Query: 315 gggcgccgtggatggagcaggaggggcgggaatattgggat 355
||||||||||| ||||||||||||||| ||| |||||||||
Sbjct: 27629856 gggcgccgtgggtggagcaggaggggcaggagtattgggat 27629816
Score = 93.7 bits (47), Expect = 2e-16
Identities = 89/103 (86%)
Strand = Plus / Minus
Query: 255 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 314
||||||||||||||||||| |||||| |||||| ||| | ||||| || ||||||| |
Sbjct: 24627046 tggacgacacgcagttcgtgcggttcgacagcgacgcccccaatccgcggatggagccgc 24626987
Query: 315 gggcgccgtggatggagcaggaggggcgggaatattgggatcg 357
||||||||||||| |||||||||||| ||| |||||||||||
Sbjct: 24626986 gggcgccgtggatacagcaggaggggcaggactattgggatcg 24626944
Score = 83.8 bits (42), Expect = 2e-13
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 488 gacgggcgcatccttcgagggtacgagcagttctcctacgacggcgacgattacatcgtc 547
||||||||| |||| || |||||| |||||| |||| ||||||| ||||||||||||
Sbjct: 27614938 gacgggcgcctcctccgcgggtacagtcagttcgcctatgacggcgcggattacatcgtc 27614997
Query: 548 ctgaatgaagacctgcgctcctggaccgcg 577
||||| || |||||||||||||||||||||
Sbjct: 27614998 ctgaacgaggacctgcgctcctggaccgcg 27615027
Score = 81.8 bits (41), Expect = 6e-13
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 469 cggctgcgacgtgggatccgacgggcgcatccttcgagggtacgagcagttctcctacga 528
||||||||||||||| | ||||||| | |||| || |||||| ||||| ||||||
Sbjct: 24644339 cggctgcgacgtggggccagacgggctcctcctccgcgggtacagtcagtttggctacga 24644280
Query: 529 cggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 577
||||| ||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 24644279 cggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcg 24644231
Score = 81.8 bits (41), Expect = 6e-13
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 255 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 314
||||||||||||||||||| |||||| || | | ||| ||||||| || |||||||||
Sbjct: 24686630 tggacgacacgcagttcgtgcggttcgacaactacgccccgaatccgcggatggagcctc 24686571
Query: 315 gggcgccgtggatggagcaggaggggcgggaatattgggat 355
||| ||||||||| |||||||||||| ||| |||||||||
Sbjct: 24686570 gggtgccgtggatacagcaggaggggcaggactattgggat 24686530
Score = 79.8 bits (40), Expect = 2e-12
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 522 cctacgacggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 577
|||||||||||| ||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 24686138 cctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcg 24686083
Score = 79.8 bits (40), Expect = 2e-12
Identities = 91/108 (84%)
Strand = Plus / Minus
Query: 470 ggctgcgacgtgggatccgacgggcgcatccttcgagggtacgagcagttctcctacgac 529
|||||| || ||||| | ||||||| | |||| || |||||||| ||| | ||||||||
Sbjct: 24750704 ggctgctacttgggaccagacgggctcctcctccgcgggtacgatcaggacgcctacgac 24750645
Query: 530 ggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 577
|||| ||||||| ||| |||||| || |||||||||||||||||||||
Sbjct: 24750644 ggcgccgattacctcgccctgaacgaggacctgcgctcctggaccgcg 24750597
Score = 73.8 bits (37), Expect = 2e-10
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 257 gacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctcgg 316
||||||||||||||||| |||||| |||| ||||| ||||||| |||| |||||| |||
Sbjct: 27614533 gacgacacgcagttcgtgcggttcgacagcaatgccccgaatccgagggaggagccgcgg 27614592
Query: 317 gcgccgtggatggagcaggaggggcgggaatattgggatcg 357
| |||||| |||||| |||||| | ||| ||||| |||||
Sbjct: 27614593 acaccgtgggtggagctggagggcccggagtattgcgatcg 27614633
Score = 71.9 bits (36), Expect = 6e-10
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 522 cctacgacggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 577
|||||||||||| ||||||| ||| |||||| || |||||||||||||||||||||
Sbjct: 24658082 cctacgacggcgccgattacgtcgccctgaacgaggacctgcgctcctggaccgcg 24658027
Score = 69.9 bits (35), Expect = 2e-09
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 661 gtgtgtggagtggctccgcaagtacctcgagaaggggaaggacgtgctgcagcgcgcag 719
||||||||||| ||||||||| ||||| |||| |||||||||| ||||||||||||||
Sbjct: 24750513 gtgtgtggagtcgctccgcaaatacctggagatggggaaggacacgctgcagcgcgcag 24750455
Score = 61.9 bits (31), Expect = 6e-07
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 661 gtgtgtggagtggctccgcaagtacctcgagaaggggaaggacgtgctgcagcgcgcag 719
||||||||||| |||||||| ||||| |||| |||||||||| ||||||||||||||
Sbjct: 24685999 gtgtgtggagtcgctccgcagatacctggagatggggaaggacacgctgcagcgcgcag 24685941
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,041,749
Number of extensions: 184
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 28
Length of query: 949
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 928
Effective length of database: 2,808,413,156
Effective search space: 2606207408768
Effective search space used: 2606207408768
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)