Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007792
(1075 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019677.1| interferon regulatory factor 9 [Bos taurus]. 473 e-137
Alignment gi|NP_001077238.1| interferon regulatory factor 8 [Bos taurus]. 174 2e-43
Alignment gi|XP_002692330.1| PREDICTED: interferon regulatory factor 10-l... 164 1e-40
Alignment gi|XP_875833.2| PREDICTED: interferon regulatory factor 10-like... 164 1e-40
Alignment gi|NP_001193091.1| interferon regulatory factor 4 [Bos taurus]. 156 3e-38
Alignment gi|XP_002697657.1| PREDICTED: interferon regulatory factor 4-li... 156 3e-38
Alignment gi|NP_001070402.1| interferon regulatory factor 6 [Bos taurus]. 114 1e-25
Alignment gi|NP_001178190.1| interferon regulatory factor 1 [Bos taurus]. 108 8e-24
Alignment gi|NP_001030542.1| interferon regulatory factor 5 [Bos taurus]. 107 1e-23
Alignment gi|NP_001192722.1| interferon regulatory factor 2 [Bos taurus]. 101 1e-21
>ref|NP_001019677.1| interferon regulatory factor 9 [Bos taurus].
Length = 474
Score = 473 bits (1217), Expect(2) = e-137
Identities = 235/321 (73%), Positives = 258/321 (80%), Gaps = 14/321 (4%)
Frame = +1
Query: 91 RMASGRARCTRKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFF 270
RMASGR RCTRKLRNWVVEQVESGQFPGVCW+D AKTMFRIPWKHAGKQDFREDQDAAFF
Sbjct: 35 RMASGRTRCTRKLRNWVVEQVESGQFPGVCWEDAAKTMFRIPWKHAGKQDFREDQDAAFF 94
Query: 271 KAWAIFKGKYKEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGT 450
KAWAI+KGKY+EG SEGPAIWKTRLRCALNKS EFEEVPE GHRDGAEPYKVYRLLPPGT
Sbjct: 95 KAWAIYKGKYREGSSEGPAIWKTRLRCALNKSCEFEEVPEIGHRDGAEPYKVYRLLPPGT 154
Query: 451 LPAQPGSQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETN-------- 606
+PAQ G+QKLPSKR HSS + EK+E+EVT KNC LSPS+LQ+P +NE+ ETN
Sbjct: 155 VPAQSGTQKLPSKRPHSSASSEKKEEEVTAKNCILSPSLLQEPPQNEMVETNGGAGRLDF 214
Query: 607 ------XXXXXXXXXXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFI 768
EGR T EA FQG+ +SLE L PP+SDYSLLLTFI
Sbjct: 215 GSTGSSSSSSSSSGSSSSSSNSPEPQEGRDTAEALFQGELLSLEVLPPPDSDYSLLLTFI 274
Query: 769 YDGHVVGEAQVQSLDCRLVAEPSGSQCSIEQVIFPKPGPREPTQRLLSQLKRGVLVASNS 948
Y+G VVGEAQVQSLDCRLVAEPS SQCS+EQVIFPKP PREP RLL+QL+RGVL+ASNS
Sbjct: 275 YNGRVVGEAQVQSLDCRLVAEPSSSQCSMEQVIFPKPDPREPAHRLLNQLQRGVLLASNS 334
Query: 949 RGLFVQRLCPVPSPGTRPRLP 1011
RGLFVQRLCP+P P++P
Sbjct: 335 RGLFVQRLCPIPISWNAPQMP 355
Score = 35.4 bits (80), Expect(2) = e-137
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2
Query: 1022 PHLLPSNECVELFRT 1066
PHLLP+NECVELFRT
Sbjct: 360 PHLLPTNECVELFRT 374
>ref|NP_001077238.1| interferon regulatory factor 8 [Bos taurus].
Length = 426
Score = 174 bits (440), Expect = 2e-43
Identities = 109/310 (35%), Positives = 158/310 (50%), Gaps = 25/310 (8%)
Frame = +1
Query: 121 RKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKY 300
R+LR W++EQ++S +PG+ W++D KTMFRIPWKHAGKQD+ ++ DA+ FKAWA+FKGK+
Sbjct: 8 RRLRQWLIEQIDSTMYPGLIWENDEKTMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF 67
Query: 301 KEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
KEGD PA WKTRLRCALNKS +FEEV + D +EPYKVYR++P ++
Sbjct: 68 KEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVP---------EEEQ 118
Query: 481 PSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETNXXXXXXXXXXXXXXXXXX 660
K ++ C E E+ + I + P + +
Sbjct: 119 KCKLGVAAPGCVSEAVEMECGRSEIDELIKEPPGDDYMGMVK--------------RSPS 164
Query: 661 XPEGRVTTEAP---FQGDQVSLEHLLPPNSDY--------SLLLTFIYDGHVVGEAQVQS 807
PE + P Q L L+P S Y ++++F Y G +VG+
Sbjct: 165 PPEACRSQLLPDWWVQQPSAGLP-LVPGYSAYDAHHSAFSQMVISFYYGGKLVGQTTTTC 223
Query: 808 LD-CRLVAEPSG-------SQCSIEQVIF------PKPGPREPTQRLLSQLKRGVLVASN 945
+ CRL G +E V F P R+ T++L L+RG+L+ S+
Sbjct: 224 PEGCRLSLGQPGLLGGKLYGPEGLELVRFPPADTIPSERQRQVTRKLFGHLERGILLHSS 283
Query: 946 SRGLFVQRLC 975
+G+ V+RLC
Sbjct: 284 RQGVLVKRLC 293
>ref|XP_002692330.1| PREDICTED: interferon regulatory factor 10-like [Bos taurus].
Length = 460
Score = 164 bits (415), Expect = 1e-40
Identities = 115/316 (36%), Positives = 157/316 (49%), Gaps = 32/316 (10%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+LR W+V Q+ESG++ G+ W+D KT+FRIPWKHA KQ ++ QDAA F+AWAI+KGKY
Sbjct: 28 RLREWLVAQIESGRYAGLRWEDAGKTLFRIPWKHAAKQGYQVRQDAALFRAWAIYKGKYL 87
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPG-----TLPAQP 465
EG D E P+ WKTRLRCALNKS +F EVPE D + PYKVYRLL G T P
Sbjct: 88 EGIDKEDPSTWKTRLRCALNKSADFCEVPERSQLDISNPYKVYRLLSDGAHDPVTRACAP 147
Query: 466 GSQK--LPSKRRH----SSVTCEKEEDEVTTKNCTLSPS-------ILQDPFKNE---LA 597
G ++ L S+++ + C EE ++ TL P+ + +D K + LA
Sbjct: 148 GKEEGILQSQQKPPGGVTEPACRTEEQVLSPTLTTLLPNAQDGSGLVTEDKDKEQPSRLA 207
Query: 598 ETNXXXXXXXXXXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDG 777
+ N P +P + S N D L + Y
Sbjct: 208 QQNFLLPSPLADHSYQAQNPVHP------WSPLPSEDFS-------NPDCWLHVRLFYRA 254
Query: 778 HVVGEAQVQSLD-CRLVAEPS--------GSQCSIEQVIFPK-PGPREPTQRLLSQLKRG 927
+V EA + + C L + G + QV FP+ P +RLL L+RG
Sbjct: 255 ELVREATALAAEGCSLSPRAATAAAERLLGPPPRVAQVRFPEPPASAHVLRRLLPHLERG 314
Query: 928 VLVASNSRGLFVQRLC 975
VL+ G+F +RLC
Sbjct: 315 VLLWVAPEGVFAKRLC 330
>ref|XP_875833.2| PREDICTED: interferon regulatory factor 10-like [Bos taurus].
Length = 460
Score = 164 bits (415), Expect = 1e-40
Identities = 115/316 (36%), Positives = 157/316 (49%), Gaps = 32/316 (10%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+LR W+V Q+ESG++ G+ W+D KT+FRIPWKHA KQ ++ QDAA F+AWAI+KGKY
Sbjct: 28 RLREWLVAQIESGRYAGLRWEDAGKTLFRIPWKHAAKQGYQVRQDAALFRAWAIYKGKYL 87
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPG-----TLPAQP 465
EG D E P+ WKTRLRCALNKS +F EVPE D + PYKVYRLL G T P
Sbjct: 88 EGIDKEDPSTWKTRLRCALNKSADFCEVPERSQLDISNPYKVYRLLSDGAHDPVTRACAP 147
Query: 466 GSQK--LPSKRRH----SSVTCEKEEDEVTTKNCTLSPS-------ILQDPFKNE---LA 597
G ++ L S+++ + C EE ++ TL P+ + +D K + LA
Sbjct: 148 GKEEGILQSQQKPPGGVTEPACRTEEQVLSPTLTTLLPNAQDGSGLVTEDKDKEQPSRLA 207
Query: 598 ETNXXXXXXXXXXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDG 777
+ N P +P + S N D L + Y
Sbjct: 208 QQNFLLPSPLADHSYQAQNPVHP------WSPLPSEDFS-------NPDCWLHVRLFYRA 254
Query: 778 HVVGEAQVQSLD-CRLVAEPS--------GSQCSIEQVIFPK-PGPREPTQRLLSQLKRG 927
+V EA + + C L + G + QV FP+ P +RLL L+RG
Sbjct: 255 ELVREATALAAEGCSLSPRAATAAAERLLGPPPRVAQVRFPEPPASAHVLRRLLPHLERG 314
Query: 928 VLVASNSRGLFVQRLC 975
VL+ G+F +RLC
Sbjct: 315 VLLWVAPEGVFAKRLC 330
>ref|NP_001193091.1| interferon regulatory factor 4 [Bos taurus].
Length = 451
Score = 156 bits (395), Expect = 3e-38
Identities = 67/120 (55%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
KLR W+++Q++SG++PG+ W+++ K++FRIPWKHAGKQD+ ++DAA FKAWA+FKGK++
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
EG D P WKTRLRCALNKS +FEE+ E D ++PYKVYR++P G A+ G+++L
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEG---AKKGAKQL 139
>ref|XP_002697657.1| PREDICTED: interferon regulatory factor 4-like [Bos taurus].
Length = 451
Score = 156 bits (395), Expect = 3e-38
Identities = 67/120 (55%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
KLR W+++Q++SG++PG+ W+++ K++FRIPWKHAGKQD+ ++DAA FKAWA+FKGK++
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
EG D P WKTRLRCALNKS +FEE+ E D ++PYKVYR++P G A+ G+++L
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEG---AKKGAKQL 139
>ref|NP_001070402.1| interferon regulatory factor 6 [Bos taurus].
Length = 467
Score = 114 bits (285), Expect = 1e-25
Identities = 91/312 (29%), Positives = 136/312 (43%), Gaps = 28/312 (8%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+L+ W+V QV+SG +PG+ W F+IPWKHA + +++++ FKAWA+ GKY+
Sbjct: 9 RLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGKYQ 68
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLL----PPGTLPAQPG 468
EG D PA WK +LRCALNKS EF + + P K+Y++ P G++
Sbjct: 69 EGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQVCDIPQPQGSIINPGS 128
Query: 469 SQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQD--PFKN----ELAETNXXXXXXXX 630
+ P + + V E EEDE+ + +QD PF N +A +
Sbjct: 129 TGSAPWDEKDNDVDEEDEEDELDQSQHHVP---IQDTFPFLNINGSPIAPASVGNCSVGN 185
Query: 631 XXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQS- 807
P +AP Q S E + L + F Y G G+ S
Sbjct: 186 CSPEAVWPKTEPLEMEVPQAPIQPFYSSPELWISSLPMTDLDIKFQYRGKEYGQTMTVSN 245
Query: 808 -LDCRLVAEPSG---------SQCSIEQVIFPKP------GPREPTQRLLSQLKRGVLVA 939
CRL G S+EQV FP P + T +LL + RG+++
Sbjct: 246 PQGCRLFYGDLGPMPDQEELFGPVSLEQVKFPGPEHITNEKQKLFTSKLLDVMDRGLILE 305
Query: 940 SNSRGLFVQRLC 975
+ ++ RLC
Sbjct: 306 VSGHAIYAIRLC 317
>ref|NP_001178190.1| interferon regulatory factor 1 [Bos taurus].
Length = 322
Score = 108 bits (270), Expect = 8e-24
Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ Q+ S Q PG+ W + + +F+IPWKHA K + ++DA F++WAI G+YK
Sbjct: 7 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 66
Query: 304 EGDSE-GPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
G+ E P WK RCA+N + EEV + G+ +VYR+LPP T +Q +K
Sbjct: 67 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLT-KSQRKERKS 125
Query: 481 PSKRRHSSVTCEKEEDEVT--TKNCTLSPSILQDPFKN 588
S R S +K E + T + LS S L D N
Sbjct: 126 KSSRDARSKAKKKPYGEYSPDTFSDGLSSSTLPDDHSN 163
>ref|NP_001030542.1| interferon regulatory factor 5 [Bos taurus].
Length = 499
Score = 107 bits (268), Expect = 1e-23
Identities = 102/352 (28%), Positives = 141/352 (40%), Gaps = 51/352 (14%)
Frame = +1
Query: 73 QPAQQLRMASGRARCTRKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFRED 252
QPA + R R L+ W+V QV S Q+PG+ W + K +F IPW+HA + D
Sbjct: 3 QPAPAALLPPRRVR----LKPWLVAQVNSCQYPGLQWVNGEKKLFYIPWRHATRHGPSHD 58
Query: 253 QDAAFFKAWAIFKGKYKEG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVY 429
D FKAWA GKY EG D PA WK LRCALNKS +F + + +PYKVY
Sbjct: 59 GDNTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKVY 118
Query: 430 RLLPPGTLPAQPGSQKLPSKRRHSSVTCEKEEDEVTTKNC-------------------- 549
+ G PA+ + S E+EE+E K
Sbjct: 119 EVCSNGPAPAE---------SQPSEDNAEEEEEEELQKMLPGLSITEAVQPGPAMAPYSL 169
Query: 550 ---------TLSPSIL---QDPFKNELAETNXXXXXXXXXXXXXXXXXXXPEGRVTTEAP 693
TL P ++ P N L G ++T
Sbjct: 170 PKEDVKWPPTLQPPVVLAPPAPGPNLLVPAPGNAADFGEVFSEVLPSSQPQPGSLSTSLA 229
Query: 694 FQGDQVSLEHLLPPN--SDYSLLLTFIYDGHVVGEAQVQS-LDCRLV---AEPSGSQ--- 846
G+Q+ + L+ P+ L + F Y G + + CRL+ E + Q
Sbjct: 230 PTGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPQSCRLLYSQLEATQEQVEL 289
Query: 847 ---CSIEQVIFPKPG--PREP----TQRLLSQLKRGVLVASNSRGLFVQRLC 975
S+EQV FP P P E T +LL L RG+++ + L+ RLC
Sbjct: 290 FGPVSLEQVRFPSPEDIPSEKQRFYTNQLLDVLDRGLILQIQGQDLYAIRLC 341
>ref|NP_001192722.1| interferon regulatory factor 2 [Bos taurus].
Length = 349
Score = 101 bits (251), Expect = 1e-21
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ EQ+ S PG+ W K +F+IPW HA + + ++DA F+ WAI GK++
Sbjct: 7 RMRPWLEEQINSNMIPGLKWLSKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 66
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQ-K 477
G D P WK RCA+N + EEV + + G ++VYR+LP P++ G + K
Sbjct: 67 PGIDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPMSERPSKKGKKPK 126
Query: 478 LPSKRRHSSVTCEKEEDEVTTKN--CTLSP--SILQDPFKNELAET 603
+ R + E E + N LSP ++L K E+ T
Sbjct: 127 TEKEDRVKHIKQEPIESPLGLSNGVSDLSPEYAVLTSTIKTEVDST 172
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,931,660
Number of extensions: 1565980
Number of successful extensions: 6769
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6737
Number of HSP's successfully gapped: 14
Length of query: 358
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 255
Effective length of database: 14,273,310
Effective search space: 3639694050
Effective search space used: 3639694050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007792
(1075 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860263.1| PREDICTED: similar to interferon-stimulated tra... 477 e-139
Alignment gi|XP_849977.1| PREDICTED: similar to interferon-stimulated tra... 470 e-137
Alignment gi|XP_860301.1| PREDICTED: similar to interferon-stimulated tra... 249 3e-66
Alignment gi|XP_546793.2| PREDICTED: similar to interferon regulatory fac... 176 4e-44
Alignment gi|XP_852252.1| PREDICTED: similar to Interferon regulatory fac... 151 9e-37
Alignment gi|XP_537138.2| PREDICTED: similar to Interferon regulatory fac... 109 4e-24
Alignment gi|XP_538621.2| PREDICTED: similar to Interferon regulatory fac... 105 1e-22
Alignment gi|XP_532847.2| PREDICTED: similar to interferon regulatory fac... 103 2e-22
Alignment gi|XP_848907.1| PREDICTED: similar to interferon regulatory fac... 103 2e-22
Alignment gi|XP_857502.1| PREDICTED: similar to interferon regulatory fac... 103 3e-22
>ref|XP_860263.1| PREDICTED: similar to interferon-stimulated transcription factor 3,
gamma 48kDa isoform 3 [Canis familiaris].
Length = 410
Score = 477 bits (1228), Expect(2) = e-139
Identities = 238/306 (77%), Positives = 251/306 (82%)
Frame = +1
Query: 94 MASGRARCTRKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFK 273
MASGRAR TRKLRNWVVEQVESGQFPGVCWDD AKTMFRIPWKHAGKQDFREDQDAAFFK
Sbjct: 1 MASGRARSTRKLRNWVVEQVESGQFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAFFK 60
Query: 274 AWAIFKGKYKEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTL 453
AWAIFKGKYKEGD EGPAIWKTRLRCALNKS EFEEVPENGHRDGAEPYKVYRLLP GTL
Sbjct: 61 AWAIFKGKYKEGDMEGPAIWKTRLRCALNKSPEFEEVPENGHRDGAEPYKVYRLLPSGTL 120
Query: 454 PAQPGSQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETNXXXXXXXXX 633
PAQPG+QK PSKR HSSV+ E+EEDE T KN SPS+L DPF+NE N
Sbjct: 121 PAQPGTQKSPSKRHHSSVSSEREEDERTVKNGAPSPSLLVDPFRNEEVGAN-GGTSRSNF 179
Query: 634 XXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQSLD 813
EG T EAPFQGDQVSLE L PP SDYSLLLTFIY G +VG+AQVQSLD
Sbjct: 180 GSSSNSSPEPQEGTGTAEAPFQGDQVSLELLPPPGSDYSLLLTFIYSGRMVGKAQVQSLD 239
Query: 814 CRLVAEPSGSQCSIEQVIFPKPGPREPTQRLLSQLKRGVLVASNSRGLFVQRLCPVPSPG 993
CRLVAEPSGSQC +EQV+FPKP P EPTQRLLSQ++RGVLVASNSRGLFVQRLCP+P
Sbjct: 240 CRLVAEPSGSQCGMEQVVFPKPDPPEPTQRLLSQIERGVLVASNSRGLFVQRLCPIPVSW 299
Query: 994 TRPRLP 1011
P+ P
Sbjct: 300 NAPQAP 305
Score = 37.4 bits (85), Expect(2) = e-139
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +2
Query: 995 RAPGSPWFRPHLLPSNECVELFRT 1066
+AP P PHLLPSNECVELFRT
Sbjct: 303 QAPPGPG--PHLLPSNECVELFRT 324
>ref|XP_849977.1| PREDICTED: similar to interferon-stimulated transcription factor 3,
gamma 48kDa isoform 2 [Canis familiaris].
Length = 424
Score = 470 bits (1209), Expect(2) = e-137
Identities = 237/319 (74%), Positives = 250/319 (78%), Gaps = 13/319 (4%)
Frame = +1
Query: 94 MASGRARCTRKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFK 273
MASGRAR TRKLRNWVVEQVESGQFPGVCWDD AKTMFRIPWKHAGKQDFREDQDAAFFK
Sbjct: 1 MASGRARSTRKLRNWVVEQVESGQFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAFFK 60
Query: 274 AWAIFKGKYKEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTL 453
AWAIFKGKYKEGD EGPAIWKTRLRCALNKS EFEEVPENGHRDGAEPYKVYRLLP GTL
Sbjct: 61 AWAIFKGKYKEGDMEGPAIWKTRLRCALNKSPEFEEVPENGHRDGAEPYKVYRLLPSGTL 120
Query: 454 PAQPGSQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETN--------- 606
PAQPG+QK PSKR HSSV+ E+EEDE T KN SPS+L DPF+N A
Sbjct: 121 PAQPGTQKSPSKRHHSSVSSEREEDERTVKNGAPSPSLLVDPFRNVRARVGRGGWRLRAG 180
Query: 607 ----XXXXXXXXXXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYD 774
EG T EAPFQGDQVSLE L PP SDYSLLLTFIY
Sbjct: 181 TVGANGGTSRSNFGSSSNSSPEPQEGTGTAEAPFQGDQVSLELLPPPGSDYSLLLTFIYS 240
Query: 775 GHVVGEAQVQSLDCRLVAEPSGSQCSIEQVIFPKPGPREPTQRLLSQLKRGVLVASNSRG 954
G +VG+AQVQSLDCRLVAEPSGSQC +EQV+FPKP P EPTQRLLSQ++RGVLVASNSRG
Sbjct: 241 GRMVGKAQVQSLDCRLVAEPSGSQCGMEQVVFPKPDPPEPTQRLLSQIERGVLVASNSRG 300
Query: 955 LFVQRLCPVPSPGTRPRLP 1011
LFVQRLCP+P P+ P
Sbjct: 301 LFVQRLCPIPVSWNAPQAP 319
Score = 37.4 bits (85), Expect(2) = e-137
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +2
Query: 995 RAPGSPWFRPHLLPSNECVELFRT 1066
+AP P PHLLPSNECVELFRT
Sbjct: 317 QAPPGPG--PHLLPSNECVELFRT 338
>ref|XP_860301.1| PREDICTED: similar to interferon-stimulated transcription factor 3,
gamma 48kDa isoform 4 [Canis familiaris].
Length = 217
Score = 249 bits (636), Expect = 3e-66
Identities = 116/121 (95%), Positives = 116/121 (95%)
Frame = +1
Query: 94 MASGRARCTRKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFK 273
MASGRAR TRKLRNWVVEQVESGQFPGVCWDD AKTMFRIPWKHAGKQDFREDQDAAFFK
Sbjct: 1 MASGRARSTRKLRNWVVEQVESGQFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAFFK 60
Query: 274 AWAIFKGKYKEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTL 453
AWAIFKGKYKEGD EGPAIWKTRLRCALNKS EFEEVPENGHRDGAEPYKVYRLLP GTL
Sbjct: 61 AWAIFKGKYKEGDMEGPAIWKTRLRCALNKSPEFEEVPENGHRDGAEPYKVYRLLPSGTL 120
Query: 454 P 456
P
Sbjct: 121 P 121
>ref|XP_546793.2| PREDICTED: similar to interferon regulatory factor 8 [Canis
familiaris].
Length = 426
Score = 176 bits (445), Expect = 4e-44
Identities = 105/301 (34%), Positives = 154/301 (51%), Gaps = 16/301 (5%)
Frame = +1
Query: 121 RKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKY 300
R+LR W++EQ++S +PG+ W++D K+MFRIPWKHAGKQD+ ++ DA+ FKAWA+FKGK+
Sbjct: 8 RRLRQWLIEQIDSNMYPGLIWENDEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF 67
Query: 301 KEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
KEGD PA WKTRLRCALNKS +FEEV + D +EPYKVYR++P + G
Sbjct: 68 KEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQKCKLGMATP 127
Query: 481 PSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETNXXXXXXXXXXXXXXXXXX 660
+ + C + E + K PS+ D + + +
Sbjct: 128 GCVSEITEMECGRSEIDELIK----EPSV--DDYMGVVKRSPSPPEACRNQLLSDWWVQQ 181
Query: 661 XPEG--RVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQSLD-CRLVAE 831
G VT + + ++++F Y G +VG+ + CRL
Sbjct: 182 PSAGLPLVTGYTAYDAHHSAFS---------QMVISFYYGGKLVGQTTTTCPEGCRLSLS 232
Query: 832 PSG-------SQCSIEQVIF------PKPGPREPTQRLLSQLKRGVLVASNSRGLFVQRL 972
G S +E V F P R+ T++L L+RGVL+ S+ +G+ V+RL
Sbjct: 233 QPGLPSAKLYSPEGLELVRFPPADAIPSERQRQVTRKLFGHLERGVLLHSSRQGVLVRRL 292
Query: 973 C 975
C
Sbjct: 293 C 293
>ref|XP_852252.1| PREDICTED: similar to Interferon regulatory factor 4 (IRF-4)
(Lymphocyte specific interferon regulatory factor)
(LSIRF) (NF-EM5) (Multiple myeloma oncogene 1) [Canis
familiaris].
Length = 328
Score = 151 bits (382), Expect = 9e-37
Identities = 103/285 (36%), Positives = 140/285 (49%), Gaps = 1/285 (0%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+LR+W+V Q+ESG++ G+ W+D KT+FRIPWKHA +Q +R QDAA F+AWAI+KGK+
Sbjct: 9 RLRDWLVAQIESGRYAGLRWEDAGKTLFRIPWKHAAQQGYRAQQDAALFRAWAIYKGKHL 68
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
EG D E P WKTRLRCALNKS +F EV E D + PYKVYR++ G A L
Sbjct: 69 EGIDKEDPPTWKTRLRCALNKSADFCEVRERSQLDVSNPYKVYRIVSNG---AHCPGTIL 125
Query: 481 PSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETNXXXXXXXXXXXXXXXXXX 660
P + S T +K E++ P + Q A+
Sbjct: 126 PLEDSSRSTTEDKNEEQ--------PPRLAQRASLPSAAQLT----------------GP 161
Query: 661 XPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQSLDCRLVAEPSG 840
+ R + P LP + D+S +++ G VQ R G
Sbjct: 162 LADHRYQVQEPAYHWSP-----LPSSEDFSNPDCWLHVRLFYGAELVQETTARTA---EG 213
Query: 841 SQCSIEQVIFPKPGPREPTQRLLSQLKRGVLVASNSRGLFVQRLC 975
+ S V P PG R + LL L+RGVL+ G+F +RLC
Sbjct: 214 CRLSPRAVTAPPPGAR-VLRHLLRHLERGVLLWVAPEGVFAKRLC 257
>ref|XP_537138.2| PREDICTED: similar to Interferon regulatory factor 6 (IRF-6) [Canis
familiaris].
Length = 531
Score = 109 bits (273), Expect = 4e-24
Identities = 89/308 (28%), Positives = 134/308 (43%), Gaps = 24/308 (7%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+L+ W+V QV+SG +PG+ W F+IPWKHA + +++++ FKAWA+ GKY+
Sbjct: 78 RLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGKYQ 137
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLL----PPGTLPAQPG 468
EG D PA WK +LRCALNKS EF + + P K+Y++ P G++
Sbjct: 138 EGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQVCDIPQPQGSIINPGS 197
Query: 469 SQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQD--PFKNELAETNXXXXXXXXXXXX 642
+ P + + V E EEDE+ + +QD PF N + +
Sbjct: 198 TGSAPWDEKDNDVDEEDEEDELDQSQHHVP---IQDTFPFLN-INGSPMAPASVGNCSPE 253
Query: 643 XXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQS--LDC 816
P + P Q S E + L + F Y G G+ S C
Sbjct: 254 AVWPKTEPLEIDVPQTPIQPFYSSPELWISSLPMTDLDIKFQYRGKEYGQTMTVSNPQGC 313
Query: 817 RLVAEPSG---------SQCSIEQVIFPKP------GPREPTQRLLSQLKRGVLVASNSR 951
RL G S+EQV FP P + T +LL + RG+++ +
Sbjct: 314 RLFYGDLGPMPDQEELFGPVSLEQVKFPGPEHITNEKQKLFTSKLLDVMDRGLILEVSGH 373
Query: 952 GLFVQRLC 975
++ RLC
Sbjct: 374 AIYAIRLC 381
>ref|XP_538621.2| PREDICTED: similar to Interferon regulatory factor 1 (IRF-1) [Canis
familiaris].
Length = 321
Score = 105 bits (261), Expect = 1e-22
Identities = 57/154 (37%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ Q+ S Q PG+ W + + +F+IPWKHA K + ++DA F++WAI G+YK
Sbjct: 7 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 66
Query: 304 EGDSE-GPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
G+ E P WK RCA+N + EEV + G+ +VYR+LPP T Q +K
Sbjct: 67 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLT-KNQRKERKS 125
Query: 481 PSKRRHSSVTCEKE--EDEVTTKNCTLSPSILQD 576
S R S K + T + LS S L D
Sbjct: 126 KSSRDAKSKAKRKSCGDSSPDTFSDGLSTSTLPD 159
>ref|XP_532847.2| PREDICTED: similar to interferon regulatory factor 2 isoform 1
[Canis familiaris].
Length = 347
Score = 103 bits (258), Expect = 2e-22
Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 6/166 (3%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ EQ+ S PG+ W + K +F+IPW HA + + ++DA F+ WAI GK++
Sbjct: 7 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 66
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQ-K 477
G D P WK RCA+N + EEV + + G ++VYR+LP P++ G + K
Sbjct: 67 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSKKGKKPK 126
Query: 478 LPSKRRHSSVTCEKEEDEVTTKN--CTLSP--SILQDPFKNELAET 603
+ R + E E + N LSP ++L KNE+ T
Sbjct: 127 TEKEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDST 172
>ref|XP_848907.1| PREDICTED: similar to interferon regulatory factor 2 isoform 2
[Canis familiaris].
Length = 349
Score = 103 bits (258), Expect = 2e-22
Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 6/166 (3%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ EQ+ S PG+ W + K +F+IPW HA + + ++DA F+ WAI GK++
Sbjct: 7 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 66
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQ-K 477
G D P WK RCA+N + EEV + + G ++VYR+LP P++ G + K
Sbjct: 67 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSKKGKKPK 126
Query: 478 LPSKRRHSSVTCEKEEDEVTTKN--CTLSP--SILQDPFKNELAET 603
+ R + E E + N LSP ++L KNE+ T
Sbjct: 127 TEKEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDST 172
>ref|XP_857502.1| PREDICTED: similar to interferon regulatory factor 2 isoform 4
[Canis familiaris].
Length = 351
Score = 103 bits (257), Expect = 3e-22
Identities = 58/170 (34%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ EQ+ S PG+ W + K +F+IPW HA + + ++DA F+ WAI GK++
Sbjct: 7 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 66
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
G D P WK RCA+N + EEV + + G ++VYR+LP P++ G +
Sbjct: 67 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSKKGKKPK 126
Query: 481 PSKR---RHSSVTC--EKEEDEVTTKN--CTLSP--SILQDPFKNELAET 603
K +H V E+ +V T N LSP ++L KNE+ T
Sbjct: 127 TEKEDRVKHIKVIFGGSDEKAKVVTVNGVSDLSPEYAVLTSAIKNEVDST 176
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,021,483
Number of extensions: 1612331
Number of successful extensions: 7014
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6988
Number of HSP's successfully gapped: 16
Length of query: 358
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 254
Effective length of database: 15,407,560
Effective search space: 3913520240
Effective search space used: 3913520240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007792
(1075 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001072138.1| interferon regulatory factor 9 [Sus scrofa]. 568 e-166
Alignment gi|NP_999443.1| interferon regulatory factor 6 [Sus scrofa]. 114 9e-26
Alignment gi|XP_003134757.2| PREDICTED: interferon regulatory factor 5-li... 107 1e-23
Alignment gi|XP_003134732.1| PREDICTED: interferon regulatory factor 5-li... 107 1e-23
Alignment gi|NP_001090882.1| interferon regulatory factor 1 [Sus scrofa]. 105 4e-23
Alignment gi|XP_003134731.1| PREDICTED: interferon regulatory factor 5-li... 101 6e-22
Alignment gi|XP_003133382.2| PREDICTED: interferon regulatory factor 2-li... 100 2e-21
Alignment gi|NP_001090897.1| interferon regulatory factor 7 [Sus scrofa]. 93 2e-19
Alignment gi|XP_003359988.1| PREDICTED: interferon regulatory factor 4-li... 84 1e-16
Alignment gi|NP_998935.1| interferon regulatory factor 3 [Sus scrofa]. 80 2e-15
>ref|NP_001072138.1| interferon regulatory factor 9 [Sus scrofa].
Length = 411
Score = 568 bits (1463), Expect(2) = e-166
Identities = 278/306 (90%), Positives = 279/306 (91%)
Frame = +1
Query: 94 MASGRARCTRKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFK 273
MASGRARCTRKLRNWVVEQVESGQFPGVCWDDDAKTM RIPWKHAGKQDFREDQDAAFFK
Sbjct: 1 MASGRARCTRKLRNWVVEQVESGQFPGVCWDDDAKTMSRIPWKHAGKQDFREDQDAAFFK 60
Query: 274 AWAIFKGKYKEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTL 453
AWAIFKGKYKEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHR GAEPYKVYRLLPPGTL
Sbjct: 61 AWAIFKGKYKEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRGGAEPYKVYRLLPPGTL 120
Query: 454 PAQPGSQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETNXXXXXXXXX 633
PAQPGSQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETN
Sbjct: 121 PAQPGSQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETNGGAGHSDLG 180
Query: 634 XXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQSLD 813
PEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQSLD
Sbjct: 181 SSSSSNSPESPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQSLD 240
Query: 814 CRLVAEPSGSQCSIEQVIFPKPGPREPTQRLLSQLKRGVLVASNSRGLFVQRLCPVPSPG 993
CRLVAEPSGSQCSIEQVIFPKPGPREPTQRLLSQLKRGVLVASNSRGLFVQRLCPVP
Sbjct: 241 CRLVAEPSGSQCSIEQVIFPKPGPREPTQRLLSQLKRGVLVASNSRGLFVQRLCPVPISW 300
Query: 994 TRPRLP 1011
P+ P
Sbjct: 301 NAPQAP 306
Score = 37.4 bits (85), Expect(2) = e-166
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +2
Query: 995 RAPGSPWFRPHLLPSNECVELFRT 1066
+AP P PHLLPSNECVELFRT
Sbjct: 304 QAPPGPG--PHLLPSNECVELFRT 325
>ref|NP_999443.1| interferon regulatory factor 6 [Sus scrofa].
Length = 467
Score = 114 bits (285), Expect = 9e-26
Identities = 91/312 (29%), Positives = 136/312 (43%), Gaps = 28/312 (8%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+L+ W+V QV+SG +PG+ W F+IPWKHA + +++++ FKAWA+ GKY+
Sbjct: 9 RLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGKYQ 68
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLL----PPGTLPAQPG 468
EG D PA WK +LRCALNKS EF + + P K+Y++ P G++
Sbjct: 69 EGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQVCDIPQPQGSVVNPGS 128
Query: 469 SQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQD--PFKN----ELAETNXXXXXXXX 630
+ P + + V E EEDE+ + +QD PF N +A +
Sbjct: 129 TGSAPWDEKDNDVDDEDEEDELDQSQHHVP---IQDTFPFLNINGSPIAPASVDNCSVGN 185
Query: 631 XXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQS- 807
P +AP Q S E + L + F Y G G+ S
Sbjct: 186 CSPEAVWPKAEPLEMEVPQAPIQPFYSSPELWISSLPMTDLDIKFQYRGKEYGQTMTVSN 245
Query: 808 -LDCRLV---------AEPSGSQCSIEQVIFPKP------GPREPTQRLLSQLKRGVLVA 939
CRL E S+EQV FP P + T +LL + RG+++
Sbjct: 246 PQGCRLFYGGLGPMPDQEELFGPVSLEQVKFPGPEHITNEKQKLFTSKLLDVMDRGLILE 305
Query: 940 SNSRGLFVQRLC 975
+ ++ RLC
Sbjct: 306 VSGHAIYAIRLC 317
>ref|XP_003134757.2| PREDICTED: interferon regulatory factor 5-like, partial [Sus
scrofa].
Length = 366
Score = 107 bits (266), Expect = 1e-23
Identities = 89/314 (28%), Positives = 132/314 (42%), Gaps = 30/314 (9%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+L+ W+V QV S Q+PG+ W + + F IPW+HA + +D D FKAWA GKY
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGERKFFYIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQ------ 462
EG D PA WK LRCALNKS +F + + +PYK+Y + G PA+
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPAESQPSED 135
Query: 463 ----PGSQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETNXXXXXXXX 630
PG ++ + + E TL P ++ P + +
Sbjct: 136 YCLGPGEEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPVVLGPPAPDPSLLGPAPGNPPD 195
Query: 631 XXXXXXXXXXXPE-GRVTTEAPFQGDQVSLEHLLPPN--SDYSLLLTFIYDGHVVGEAQV 801
P+ G + P +Q+ + L+ P+ L + F Y G +
Sbjct: 196 FGELLSEVLPNPQPGPLAASLPPASEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTI 255
Query: 802 QS-LDCRLV---AEPSGSQ------CSIEQVIFPKP------GPREPTQRLLSQLKRGVL 933
+ CRL E + Q S+EQV FP P R T +LL L RG++
Sbjct: 256 SNPHGCRLFYSQLEATQEQVELFGPVSLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLI 315
Query: 934 VASNSRGLFVQRLC 975
+ + L+ RLC
Sbjct: 316 LQLQGQDLYAIRLC 329
>ref|XP_003134732.1| PREDICTED: interferon regulatory factor 5-like isoform 2 [Sus
scrofa].
Length = 487
Score = 107 bits (266), Expect = 1e-23
Identities = 89/314 (28%), Positives = 132/314 (42%), Gaps = 30/314 (9%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+L+ W+V QV S Q+PG+ W + + F IPW+HA + +D D FKAWA GKY
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGERKFFYIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQ------ 462
EG D PA WK LRCALNKS +F + + +PYK+Y + G PA+
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPAESQPSED 135
Query: 463 ----PGSQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETNXXXXXXXX 630
PG ++ + + E TL P ++ P + +
Sbjct: 136 YCLGPGEEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPVVLGPPAPDPSLLGPAPGNPPD 195
Query: 631 XXXXXXXXXXXPE-GRVTTEAPFQGDQVSLEHLLPPN--SDYSLLLTFIYDGHVVGEAQV 801
P+ G + P +Q+ + L+ P+ L + F Y G +
Sbjct: 196 FGELLSEVLPNPQPGPLAASLPPASEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTI 255
Query: 802 QS-LDCRLV---AEPSGSQ------CSIEQVIFPKP------GPREPTQRLLSQLKRGVL 933
+ CRL E + Q S+EQV FP P R T +LL L RG++
Sbjct: 256 SNPHGCRLFYSQLEATQEQVELFGPVSLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLI 315
Query: 934 VASNSRGLFVQRLC 975
+ + L+ RLC
Sbjct: 316 LQLQGQDLYAIRLC 329
>ref|NP_001090882.1| interferon regulatory factor 1 [Sus scrofa].
Length = 322
Score = 105 bits (262), Expect = 4e-23
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ Q+ S Q PG+ W + + +F+IPWKHA K + ++DA F++WAI G+YK
Sbjct: 7 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 66
Query: 304 EGDSE-GPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
G+ E P WK RCA+N + EEV + G+ +VYR+LPP L ++
Sbjct: 67 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPP--LTKNQRKERK 124
Query: 481 PSKRRHSSVTCEKE---EDEVTTKNCTLSPSILQDPFKNELAE 600
R + +K+ E T + LS S L D + A+
Sbjct: 125 SKSSRDAKCKAKKKSCGESSPDTFSDGLSSSTLPDDHSSYTAQ 167
>ref|XP_003134731.1| PREDICTED: interferon regulatory factor 5-like isoform 1 [Sus
scrofa].
Length = 503
Score = 101 bits (252), Expect = 6e-22
Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+L+ W+V QV S Q+PG+ W + + F IPW+HA + +D D FKAWA GKY
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGERKFFYIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
EG D PA WK LRCALNKS +F + + +PYK+Y + G PA +
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPA----ESQ 131
Query: 481 PSKRRHSSVTCEKEEDE 531
PS+ E+EE+E
Sbjct: 132 PSEDYCLGPGEEEEEEE 148
>ref|XP_003133382.2| PREDICTED: interferon regulatory factor 2-like [Sus scrofa].
Length = 236
Score = 99.8 bits (247), Expect = 2e-21
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ EQ+ S PG+ W + K +F+IPW HA + + ++DA F+ WAI GK++
Sbjct: 7 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 66
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
G D P WK RCA+N + EEV + + G ++VYR+LP P++ G K
Sbjct: 67 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSKKG--KK 124
Query: 481 PSKRRHSSVTCEKEED 528
P + V K +D
Sbjct: 125 PKTEKEDRVKHIKVKD 140
>ref|NP_001090897.1| interferon regulatory factor 7 [Sus scrofa].
Length = 487
Score = 93.2 bits (230), Expect = 2e-19
Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 27/177 (15%)
Frame = +1
Query: 115 CTRKL-RNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFK 291
C R L +W++ +V SG++ G+ W D+A+T FR+PWKH ++D E D+ FKAWA+ +
Sbjct: 9 CPRVLFGDWLLGEVSSGRYAGLRWLDEARTRFRVPWKHFARKDLGE-SDSRIFKAWAVAR 67
Query: 292 GKYKEGDSEGP---------AIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLP- 441
G++ SEG A WKT RCAL+ + F + +N D +P+KVY + P
Sbjct: 68 GRWPPRSSEGAQPIPEGALRASWKTNFRCALHSTRRFVMLQDNS-GDPTDPHKVYMINPE 126
Query: 442 ------PGTLP--------AQPGSQKLPSKR--RHSSVTCEKEEDEVTTKNCTLSPS 564
PG P A P +LP R H+ E + + CT SP+
Sbjct: 127 LGCGEGPGFNPGEEEALEDAPPPRGELPGPRLAAHTGERLRHELARPSPEPCTPSPA 183
>ref|XP_003359988.1| PREDICTED: interferon regulatory factor 4-like [Sus scrofa].
Length = 438
Score = 84.3 bits (207), Expect = 1e-16
Identities = 82/245 (33%), Positives = 105/245 (42%), Gaps = 11/245 (4%)
Frame = +1
Query: 274 AWAIFKGKYKEG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGT 450
AWAI KGK+ EG D E P+ WKTRLRCALNKS +F EV E D + PYKVYRL+ G
Sbjct: 102 AWAIHKGKHLEGIDKEDPSTWKTRLRCALNKSADFCEVRERSQLDISNPYKVYRLVSDGA 161
Query: 451 LPAQ---PGSQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETNXXXXX 621
+ P SQ+ P + C ++D S +D K E
Sbjct: 162 HGPEEDIPQSQQEP-PGEGTEPACRTDQDG--------SGLATEDKDK----ERRPRLAQ 208
Query: 622 XXXXXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQV 801
+ R + P + L N D L + Y +V EA
Sbjct: 209 QGSPPPAALLPGPLADHRYQAQDPAHPWGLLLSEDF-GNPDCWLHVRLFYGAELVREAVA 267
Query: 802 Q-----SLDCRLVAEP-SGSQCSIEQVIFPKPGPREPTQR-LLSQLKRGVLVASNSRGLF 960
+ SL R AE G + QV FP+P P R LL L+RGVL+ G+F
Sbjct: 268 RTAEGCSLSPRAAAERLLGRPPRMAQVRFPEPPPGARVLRCLLPHLERGVLLWVAPEGVF 327
Query: 961 VQRLC 975
+RLC
Sbjct: 328 AKRLC 332
>ref|NP_998935.1| interferon regulatory factor 3 [Sus scrofa].
Length = 419
Score = 80.1 bits (196), Expect = 2e-15
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Frame = +1
Query: 136 WVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYKEG-D 312
W++ Q+ GQ GV W D+ T FRIPWKH +QD + +D F+AWA G Y G D
Sbjct: 11 WLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQD-AQQEDFGIFQAWAEASGAYTPGKD 69
Query: 313 SEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKLPSKR 492
WK R ALN+ E + E+ +D +P+K+Y + G L
Sbjct: 70 KPDLPTWKRNFRSALNRK-EALRLAEDHSKDPHDPHKIYEFVTSGVGDFPEPDTSLDLSG 128
Query: 493 RHSSVTCEKEEDEV 534
R+S T + ED +
Sbjct: 129 RYS--TSDTHEDSL 140
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,681,100
Number of extensions: 1015203
Number of successful extensions: 4426
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4393
Number of HSP's successfully gapped: 11
Length of query: 358
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,854,232
Effective search space: 2284391856
Effective search space used: 2284391856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007792
(1075 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001152889.1| interferon regulatory factor 9 isoform 1 [Mu... 374 e-107
Alignment gi|NP_001152890.1| interferon regulatory factor 9 isoform 2 [Mu... 374 e-107
Alignment gi|NP_032420.1| interferon regulatory factor 9 isoform 3 [Mus m... 372 e-106
Alignment gi|NP_032346.1| interferon regulatory factor 8 [Mus musculus]. 188 7e-48
Alignment gi|NP_038702.1| interferon regulatory factor 4 [Mus musculus]. 156 2e-38
Alignment gi|NP_058547.2| interferon regulatory factor 6 [Mus musculus]. 111 8e-25
Alignment gi|NP_001152868.1| interferon regulatory factor 1 isoform a [Mu... 106 3e-23
Alignment gi|NP_001152865.1| interferon regulatory factor 1 isoform b [Mu... 106 3e-23
Alignment gi|NP_032416.1| interferon regulatory factor 1 isoform a [Mus m... 106 3e-23
Alignment gi|NP_036187.1| interferon regulatory factor 5 [Mus musculus]. 104 1e-22
>ref|NP_001152889.1| interferon regulatory factor 9 isoform 1 [Mus musculus].
Length = 465
Score = 374 bits (959), Expect(2) = e-107
Identities = 196/308 (63%), Positives = 219/308 (71%), Gaps = 1/308 (0%)
Frame = +1
Query: 91 RMASGRARCTRKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFF 270
RMASG+ RCTRKLR+W+VEQVESG FPGVCWDD AKTMFRIPWKHAGKQDFREDQDAA F
Sbjct: 66 RMASGKVRCTRKLRSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAIF 125
Query: 271 KAWAIFKGKYKEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGT 450
KAWA+FK K+K+GD PA+WKTRLRCALNKS+EFEEVPE G D AEPYKVYR+LP GT
Sbjct: 126 KAWALFKEKHKDGDIGHPAVWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILPAGT 185
Query: 451 LPAQPGSQKLPSKRRHSSVTCEKEED-EVTTKNCTLSPSILQDPFKNELAETNXXXXXXX 627
LP QP +QK P KR S V+ E+EE+ E N ++ S + +
Sbjct: 186 LPNQPRNQKSPCKRSISCVSPEREENMENGRTNGVVNHS-------DSGSNIGGGGNGSN 238
Query: 628 XXXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQS 807
EG TTEA + D V LEH LP NSDYSLLLTFIY G VVG+ QV S
Sbjct: 239 RSDSNSNCNSELEEGAGTTEATIREDPVFLEHQLPLNSDYSLLLTFIYGGRVVGKTQVHS 298
Query: 808 LDCRLVAEPSGSQCSIEQVIFPKPGPREPTQRLLSQLKRGVLVASNSRGLFVQRLCPVPS 987
LDCRLVAE S S+ S+EQV FPKP P EPTQ LL+QL RGVLVASNSRGLFVQRLCP+P
Sbjct: 299 LDCRLVAERSDSESSMEQVEFPKPDPLEPTQHLLNQLDRGVLVASNSRGLFVQRLCPIPI 358
Query: 988 PGTRPRLP 1011
P P
Sbjct: 359 SWNAPEAP 366
Score = 34.3 bits (77), Expect(2) = e-107
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +2
Query: 998 APGSPWFRPHLLPSNECVELFRT 1066
AP P PHLLPSN+CVELF+T
Sbjct: 365 APPGPG--PHLLPSNKCVELFKT 385
>ref|NP_001152890.1| interferon regulatory factor 9 isoform 2 [Mus musculus].
Length = 417
Score = 374 bits (959), Expect(2) = e-107
Identities = 196/308 (63%), Positives = 219/308 (71%), Gaps = 1/308 (0%)
Frame = +1
Query: 91 RMASGRARCTRKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFF 270
RMASG+ RCTRKLR+W+VEQVESG FPGVCWDD AKTMFRIPWKHAGKQDFREDQDAA F
Sbjct: 18 RMASGKVRCTRKLRSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAIF 77
Query: 271 KAWAIFKGKYKEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGT 450
KAWA+FK K+K+GD PA+WKTRLRCALNKS+EFEEVPE G D AEPYKVYR+LP GT
Sbjct: 78 KAWALFKEKHKDGDIGHPAVWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILPAGT 137
Query: 451 LPAQPGSQKLPSKRRHSSVTCEKEED-EVTTKNCTLSPSILQDPFKNELAETNXXXXXXX 627
LP QP +QK P KR S V+ E+EE+ E N ++ S + +
Sbjct: 138 LPNQPRNQKSPCKRSISCVSPEREENMENGRTNGVVNHS-------DSGSNIGGGGNGSN 190
Query: 628 XXXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQS 807
EG TTEA + D V LEH LP NSDYSLLLTFIY G VVG+ QV S
Sbjct: 191 RSDSNSNCNSELEEGAGTTEATIREDPVFLEHQLPLNSDYSLLLTFIYGGRVVGKTQVHS 250
Query: 808 LDCRLVAEPSGSQCSIEQVIFPKPGPREPTQRLLSQLKRGVLVASNSRGLFVQRLCPVPS 987
LDCRLVAE S S+ S+EQV FPKP P EPTQ LL+QL RGVLVASNSRGLFVQRLCP+P
Sbjct: 251 LDCRLVAERSDSESSMEQVEFPKPDPLEPTQHLLNQLDRGVLVASNSRGLFVQRLCPIPI 310
Query: 988 PGTRPRLP 1011
P P
Sbjct: 311 SWNAPEAP 318
Score = 34.3 bits (77), Expect(2) = e-107
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +2
Query: 998 APGSPWFRPHLLPSNECVELFRT 1066
AP P PHLLPSN+CVELF+T
Sbjct: 317 APPGPG--PHLLPSNKCVELFKT 337
>ref|NP_032420.1| interferon regulatory factor 9 isoform 3 [Mus musculus].
Length = 399
Score = 372 bits (954), Expect(2) = e-106
Identities = 195/307 (63%), Positives = 218/307 (71%), Gaps = 1/307 (0%)
Frame = +1
Query: 94 MASGRARCTRKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFK 273
MASG+ RCTRKLR+W+VEQVESG FPGVCWDD AKTMFRIPWKHAGKQDFREDQDAA FK
Sbjct: 1 MASGKVRCTRKLRSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAIFK 60
Query: 274 AWAIFKGKYKEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTL 453
AWA+FK K+K+GD PA+WKTRLRCALNKS+EFEEVPE G D AEPYKVYR+LP GTL
Sbjct: 61 AWALFKEKHKDGDIGHPAVWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILPAGTL 120
Query: 454 PAQPGSQKLPSKRRHSSVTCEKEED-EVTTKNCTLSPSILQDPFKNELAETNXXXXXXXX 630
P QP +QK P KR S V+ E+EE+ E N ++ S + +
Sbjct: 121 PNQPRNQKSPCKRSISCVSPEREENMENGRTNGVVNHS-------DSGSNIGGGGNGSNR 173
Query: 631 XXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQSL 810
EG TTEA + D V LEH LP NSDYSLLLTFIY G VVG+ QV SL
Sbjct: 174 SDSNSNCNSELEEGAGTTEATIREDPVFLEHQLPLNSDYSLLLTFIYGGRVVGKTQVHSL 233
Query: 811 DCRLVAEPSGSQCSIEQVIFPKPGPREPTQRLLSQLKRGVLVASNSRGLFVQRLCPVPSP 990
DCRLVAE S S+ S+EQV FPKP P EPTQ LL+QL RGVLVASNSRGLFVQRLCP+P
Sbjct: 234 DCRLVAERSDSESSMEQVEFPKPDPLEPTQHLLNQLDRGVLVASNSRGLFVQRLCPIPIS 293
Query: 991 GTRPRLP 1011
P P
Sbjct: 294 WNAPEAP 300
Score = 34.3 bits (77), Expect(2) = e-106
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +2
Query: 998 APGSPWFRPHLLPSNECVELFRT 1066
AP P PHLLPSN+CVELF+T
Sbjct: 299 APPGPG--PHLLPSNKCVELFKT 319
>ref|NP_032346.1| interferon regulatory factor 8 [Mus musculus].
Length = 424
Score = 188 bits (477), Expect = 7e-48
Identities = 109/297 (36%), Positives = 155/297 (52%), Gaps = 12/297 (4%)
Frame = +1
Query: 121 RKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKY 300
R+LR W++EQ++S +PG+ W++D KTMFRIPWKHAGKQD+ ++ DA+ FKAWA+FKGK+
Sbjct: 8 RRLRQWLIEQIDSSMYPGLIWENDEKTMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF 67
Query: 301 KEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
KEGD PA WKTRLRCALNKS +FEEV + D +EPYKVYR++P + G
Sbjct: 68 KEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQKCKLGVAPA 127
Query: 481 PSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETNXXXXXXXXXXXXXXXXXX 660
+ C + E E K PS+ + + + +
Sbjct: 128 GCMSEVPEMECGRSEIEELIK----EPSVDEYMGMTKRSPSPPEACRSQILPDWWVQQPS 183
Query: 661 XPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQSLD-CRLVAEPS 837
VT A + + ++++F Y G +VG+A L+ CRL
Sbjct: 184 AGLPLVTGYAAYDTHHSAFS---------QMVISFYYGGKLVGQATTTCLEGCRLSLSQP 234
Query: 838 G-----SQCSIEQVIF------PKPGPREPTQRLLSQLKRGVLVASNSRGLFVQRLC 975
G +E V F P R+ T++L L+RGVL+ SN +G+FV+RLC
Sbjct: 235 GLPKLYGPDGLEPVCFPTADTIPSERQRQVTRKLFGHLERGVLLHSNRKGVFVKRLC 291
>ref|NP_038702.1| interferon regulatory factor 4 [Mus musculus].
Length = 450
Score = 156 bits (395), Expect = 2e-38
Identities = 67/120 (55%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
KLR W+++Q++SG++PG+ W+++ K++FRIPWKHAGKQD+ ++DAA FKAWA+FKGK++
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSVFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
EG D P WKTRLRCALNKS +FEE+ E D ++PYKVYR++P G A+ G+++L
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEG---AKKGAKQL 139
>ref|NP_058547.2| interferon regulatory factor 6 [Mus musculus].
Length = 467
Score = 111 bits (278), Expect = 8e-25
Identities = 93/312 (29%), Positives = 138/312 (44%), Gaps = 28/312 (8%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+L+ W+V QV+SG +PG+ W F+IPWKHA + +++++ FKAWA+ GKY+
Sbjct: 9 RLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGKYQ 68
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLP-PGTLPA--QPGS 471
EG D PA WK +LRCALNKS EF + + P K+Y++ P T + PGS
Sbjct: 69 EGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQVCDIPQTQGSVINPGS 128
Query: 472 Q-KLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQD--PFKN----ELAETNXXXXXXXX 630
P + + V ++EEDE+ + +QD PF N +A +
Sbjct: 129 TGSAPWDEKDNDVDEDEEEDELEQSQHHVP---IQDTFPFLNINGSPMAPASVGNCSVGN 185
Query: 631 XXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQS- 807
P +AP Q S E + L + F Y G G+ S
Sbjct: 186 CSPESVWPKTEPLEMEVPQAPIQPFYSSPELWISSLPMTDLDIKFQYRGKEYGQTMTVSN 245
Query: 808 -LDCRLVAEPSG---------SQCSIEQVIFPKP------GPREPTQRLLSQLKRGVLVA 939
CRL G S+EQV FP P + T +LL + RG+++
Sbjct: 246 PQGCRLFYGDLGPMPDQEELFGPVSLEQVKFPGPEHITNEKQKLFTSKLLDVMDRGLILE 305
Query: 940 SNSRGLFVQRLC 975
+ ++ RLC
Sbjct: 306 VSGHAIYAIRLC 317
>ref|NP_001152868.1| interferon regulatory factor 1 isoform a [Mus musculus].
Length = 329
Score = 106 bits (265), Expect = 3e-23
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ Q+ S Q PG+ W + + +F+IPWKHA K + ++DA F++WAI G+YK
Sbjct: 7 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 66
Query: 304 EGDSE-GPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
G+ E P WK RCA+N + EEV + G+ +VYR+LPP T Q +K
Sbjct: 67 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLT-RNQRKERKS 125
Query: 481 PSKRRHSSVTCEKEEDEVT--TKNCTLSPSILQD 576
S R S T K +V+ T + LS S L D
Sbjct: 126 KSSRDTKSKTKRKLCGDVSPDTFSDGLSSSTLPD 159
>ref|NP_001152865.1| interferon regulatory factor 1 isoform b [Mus musculus].
Length = 304
Score = 106 bits (265), Expect = 3e-23
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ Q+ S Q PG+ W + + +F+IPWKHA K + ++DA F++WAI G+YK
Sbjct: 7 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 66
Query: 304 EGDSE-GPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
G+ E P WK RCA+N + EEV + G+ +VYR+LPP T Q +K
Sbjct: 67 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLT-RNQRKERKS 125
Query: 481 PSKRRHSSVTCEKEEDEVT--TKNCTLSPSILQD 576
S R S T K +V+ T + LS S L D
Sbjct: 126 KSSRDTKSKTKRKLCGDVSPDTFSDGLSSSTLPD 159
>ref|NP_032416.1| interferon regulatory factor 1 isoform a [Mus musculus].
Length = 329
Score = 106 bits (265), Expect = 3e-23
Identities = 59/154 (38%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ Q+ S Q PG+ W + + +F+IPWKHA K + ++DA F++WAI G+YK
Sbjct: 7 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 66
Query: 304 EGDSE-GPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
G+ E P WK RCA+N + EEV + G+ +VYR+LPP T Q +K
Sbjct: 67 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLT-RNQRKERKS 125
Query: 481 PSKRRHSSVTCEKEEDEVT--TKNCTLSPSILQD 576
S R S T K +V+ T + LS S L D
Sbjct: 126 KSSRDTKSKTKRKLCGDVSPDTFSDGLSSSTLPD 159
>ref|NP_036187.1| interferon regulatory factor 5 [Mus musculus].
Length = 497
Score = 104 bits (260), Expect = 1e-22
Identities = 97/334 (29%), Positives = 135/334 (40%), Gaps = 50/334 (14%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+L+ W+V QV S Q+PG+ W + K +F IPW+HA + +D D FKAWA GKY
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFYIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLP--AQPGSQ 474
EG D PA WK LRCALNKS +F+ + +PYK+Y + G P +QP
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFQLFYDGPRDMPPQPYKIYEVCSNGPAPTESQPTDD 135
Query: 475 KLPSKRRHSSVTCEKEEDEV-----------------------TTKNCTLSPSILQDPF- 582
+ + E+EE+E+ K T P LQ P
Sbjct: 136 YVLGEEE------EEEEEELQRMLPGLSITEPALPGPPNAPYSLPKEDTKWPPALQPPVG 189
Query: 583 -------KNELAETNXXXXXXXXXXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNS 741
N LA + + TE P D + H+LP
Sbjct: 190 LGPPVPDPNLLAPPSGNPAGFRQLLPEVLEPGPLASSQPPTE-PLLPDLLISPHMLPLT- 247
Query: 742 DYSLLLTFIYDGHVVGEAQVQS-LDCRLV---AEPSGSQ------CSIEQVIFPKP---- 879
L + F Y G + + CRL E + Q ++EQV FP P
Sbjct: 248 --DLEIKFQYRGRAPRTLTISNPQGCRLFYSQLEATQEQVELFGPVTLEQVRFPSPEDIP 305
Query: 880 --GPREPTQRLLSQLKRGVLVASNSRGLFVQRLC 975
R T +LL L RG+++ + L+ RLC
Sbjct: 306 SDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLC 339
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,873,155
Number of extensions: 1291353
Number of successful extensions: 5272
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5250
Number of HSP's successfully gapped: 20
Length of query: 358
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 255
Effective length of database: 12,523,851
Effective search space: 3193582005
Effective search space used: 3193582005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007792
(1075 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006075.3| interferon regulatory factor 9 [Homo sapiens]. 461 e-134
Alignment gi|NP_002154.1| interferon regulatory factor 8 [Homo sapiens]. 178 9e-45
Alignment gi|NP_001182215.1| interferon regulatory factor 4 isoform 2 [Ho... 156 3e-38
Alignment gi|NP_002451.2| interferon regulatory factor 4 isoform 1 [Homo ... 156 3e-38
Alignment gi|NP_006138.1| interferon regulatory factor 6 isoform 1 [Homo ... 114 2e-25
Alignment gi|NP_001092097.2| interferon regulatory factor 5 isoform b [Ho... 107 2e-23
Alignment gi|NP_001092100.1| interferon regulatory factor 5 isoform b [Ho... 107 2e-23
Alignment gi|NP_116032.1| interferon regulatory factor 5 isoform b [Homo ... 107 2e-23
Alignment gi|NP_002189.1| interferon regulatory factor 1 [Homo sapiens]. 105 9e-23
Alignment gi|NP_002190.2| interferon regulatory factor 2 [Homo sapiens]. 103 3e-22
>ref|NP_006075.3| interferon regulatory factor 9 [Homo sapiens].
Length = 393
Score = 461 bits (1186), Expect(2) = e-134
Identities = 225/306 (73%), Positives = 249/306 (81%)
Frame = +1
Query: 94 MASGRARCTRKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFK 273
MASGRARCTRKLRNWVVEQVESGQFPGVCWDD AKTMFRIPWKHAGKQDFREDQDAAFFK
Sbjct: 1 MASGRARCTRKLRNWVVEQVESGQFPGVCWDDTAKTMFRIPWKHAGKQDFREDQDAAFFK 60
Query: 274 AWAIFKGKYKEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTL 453
AWAIFKGKYKEGD+ GPA+WKTRLRCALNKS+EF+EVPE G D AEPYKVY+LLPPG +
Sbjct: 61 AWAIFKGKYKEGDTGGPAVWKTRLRCALNKSSEFKEVPERGRMDVAEPYKVYQLLPPGIV 120
Query: 454 PAQPGSQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQDPFKNELAETNXXXXXXXXX 633
QPG+QK+PSKR+HSSV+ E++E+E +NCTLSPS+LQD NE +
Sbjct: 121 SGQPGTQKVPSKRQHSSVSSERKEEEDAMQNCTLSPSVLQDSLNNEEEGASGGAVHSDIG 180
Query: 634 XXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQSLD 813
E TTEAPFQGDQ SLE LLPP DYSLLLTFIY+G VVGEAQVQSLD
Sbjct: 181 SSSSSSSPEPQEVTDTTEAPFQGDQRSLEFLLPPEPDYSLLLTFIYNGRVVGEAQVQSLD 240
Query: 814 CRLVAEPSGSQCSIEQVIFPKPGPREPTQRLLSQLKRGVLVASNSRGLFVQRLCPVPSPG 993
CRLVAEPSGS+ S+EQV+FPKPGP EPTQRLLSQL+RG+LVASN RGLFVQRLCP+P
Sbjct: 241 CRLVAEPSGSESSMEQVLFPKPGPLEPTQRLLSQLERGILVASNPRGLFVQRLCPIPISW 300
Query: 994 TRPRLP 1011
P+ P
Sbjct: 301 NAPQAP 306
Score = 37.4 bits (85), Expect(2) = e-134
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +2
Query: 995 RAPGSPWFRPHLLPSNECVELFRT 1066
+AP P PHLLPSNECVELFRT
Sbjct: 304 QAPPGPG--PHLLPSNECVELFRT 325
>ref|NP_002154.1| interferon regulatory factor 8 [Homo sapiens].
Length = 426
Score = 178 bits (451), Expect = 9e-45
Identities = 106/303 (34%), Positives = 160/303 (52%), Gaps = 18/303 (5%)
Frame = +1
Query: 121 RKLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKY 300
R+LR W++EQ++S +PG+ W+++ K+MFRIPWKHAGKQD+ ++ DA+ FKAWA+FKGK+
Sbjct: 8 RRLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKF 67
Query: 301 KEGDSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
KEGD PA WKTRLRCALNKS +FEEV + D +EPYKVYR++P + G
Sbjct: 68 KEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQKCKLGVATA 127
Query: 481 PSKRRHSSVTCEKEEDEVTTKNCTLSP---SILQDPFKNELAETNXXXXXXXXXXXXXXX 651
+ + C + E + K ++ I + P E +
Sbjct: 128 GCVNEVTEMECGRSEIDELIKEPSVDDYMGMIKRSPSPPEACRSQLLPDWWAQ------- 180
Query: 652 XXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYS-LLLTFIYDGHVVGEAQVQSLD-CRLV 825
+ +T P + + +S +S ++++F Y G +VG+A + CRL
Sbjct: 181 -------QPSTGVPLVTGYTTYD---AHHSAFSQMVISFYYGGKLVGQATTTCPEGCRLS 230
Query: 826 AEPSG-------SQCSIEQVIF------PKPGPREPTQRLLSQLKRGVLVASNSRGLFVQ 966
G +E V F P R+ T++L L+RGVL+ S+ +G+FV+
Sbjct: 231 LSQPGLPGTKLYGPEGLELVRFPPADAIPSERQRQVTRKLFGHLERGVLLHSSRQGVFVK 290
Query: 967 RLC 975
RLC
Sbjct: 291 RLC 293
>ref|NP_001182215.1| interferon regulatory factor 4 isoform 2 [Homo sapiens].
Length = 450
Score = 156 bits (395), Expect = 3e-38
Identities = 67/120 (55%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
KLR W+++Q++SG++PG+ W+++ K++FRIPWKHAGKQD+ ++DAA FKAWA+FKGK++
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
EG D P WKTRLRCALNKS +FEE+ E D ++PYKVYR++P G A+ G+++L
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEG---AKKGAKQL 139
>ref|NP_002451.2| interferon regulatory factor 4 isoform 1 [Homo sapiens].
Length = 451
Score = 156 bits (395), Expect = 3e-38
Identities = 67/120 (55%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
KLR W+++Q++SG++PG+ W+++ K++FRIPWKHAGKQD+ ++DAA FKAWA+FKGK++
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
EG D P WKTRLRCALNKS +FEE+ E D ++PYKVYR++P G A+ G+++L
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEG---AKKGAKQL 139
>ref|NP_006138.1| interferon regulatory factor 6 isoform 1 [Homo sapiens].
Length = 467
Score = 114 bits (285), Expect = 2e-25
Identities = 91/312 (29%), Positives = 136/312 (43%), Gaps = 28/312 (8%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+L+ W+V QV+SG +PG+ W F+IPWKHA + +++++ FKAWA+ GKY+
Sbjct: 9 RLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGKYQ 68
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLL----PPGTLPAQPG 468
EG D PA WK +LRCALNKS EF + + P K+Y++ P G++
Sbjct: 69 EGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQVCDIPQPQGSIINPGS 128
Query: 469 SQKLPSKRRHSSVTCEKEEDEVTTKNCTLSPSILQD--PFKN----ELAETNXXXXXXXX 630
+ P + + V E EEDE+ + +QD PF N +A +
Sbjct: 129 TGSAPWDEKDNDVDEEDEEDELDQSQHHVP---IQDTFPFLNINGSPMAPASVGNCSVGN 185
Query: 631 XXXXXXXXXXXPEGRVTTEAPFQGDQVSLEHLLPPNSDYSLLLTFIYDGHVVGEAQVQS- 807
P +AP Q S E + L + F Y G G+ S
Sbjct: 186 CSPEAVWPKTEPLEMEVPQAPIQPFYSSPELWISSLPMTDLDIKFQYRGKEYGQTMTVSN 245
Query: 808 -LDCRLVAEPSG---------SQCSIEQVIFPKP------GPREPTQRLLSQLKRGVLVA 939
CRL G S+EQV FP P + T +LL + RG+++
Sbjct: 246 PQGCRLFYGDLGPMPDQEELFGPVSLEQVKFPGPEHITNEKQKLFTSKLLDVMDRGLILE 305
Query: 940 SNSRGLFVQRLC 975
+ ++ RLC
Sbjct: 306 VSGHAIYAIRLC 317
>ref|NP_001092097.2| interferon regulatory factor 5 isoform b [Homo sapiens].
Length = 498
Score = 107 bits (266), Expect = 2e-23
Identities = 98/328 (29%), Positives = 136/328 (41%), Gaps = 44/328 (13%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+L+ W+V QV S Q+PG+ W + K +F IPW+HA + +D D FKAWA GKY
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
EG D PA WK LRCALNKS +F + + +PYK+Y + G PA SQ
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNG--PAPTDSQP- 132
Query: 481 PSKRRHSSVTCEKEEDEV-----------------TTKNCTLSPSILQDPFKNELAETNX 609
P + E+EE+E+ T + TL P LQ P
Sbjct: 133 PEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPTLQPPTLQPPVVLGP 192
Query: 610 XXXXXXXXXXXXXXXXXXPE--------GRVTTEAPFQGDQVSLEHLLPPN--SDYSLLL 759
E G + P G+Q+ + L+ P+ L +
Sbjct: 193 PAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDLEI 252
Query: 760 TFIYDGHVVGEAQVQS-LDCRLV---AEPSGSQ------CSIEQVIFPKP------GPRE 891
F Y G + + CRL E + Q S+EQV FP P R
Sbjct: 253 KFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRF 312
Query: 892 PTQRLLSQLKRGVLVASNSRGLFVQRLC 975
T +LL L RG+++ + L+ RLC
Sbjct: 313 YTNQLLDVLDRGLILQLQGQDLYAIRLC 340
>ref|NP_001092100.1| interferon regulatory factor 5 isoform b [Homo sapiens].
Length = 498
Score = 107 bits (266), Expect = 2e-23
Identities = 98/328 (29%), Positives = 136/328 (41%), Gaps = 44/328 (13%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+L+ W+V QV S Q+PG+ W + K +F IPW+HA + +D D FKAWA GKY
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
EG D PA WK LRCALNKS +F + + +PYK+Y + G PA SQ
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNG--PAPTDSQP- 132
Query: 481 PSKRRHSSVTCEKEEDEV-----------------TTKNCTLSPSILQDPFKNELAETNX 609
P + E+EE+E+ T + TL P LQ P
Sbjct: 133 PEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPTLQPPTLQPPVVLGP 192
Query: 610 XXXXXXXXXXXXXXXXXXPE--------GRVTTEAPFQGDQVSLEHLLPPN--SDYSLLL 759
E G + P G+Q+ + L+ P+ L +
Sbjct: 193 PAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDLEI 252
Query: 760 TFIYDGHVVGEAQVQS-LDCRLV---AEPSGSQ------CSIEQVIFPKP------GPRE 891
F Y G + + CRL E + Q S+EQV FP P R
Sbjct: 253 KFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRF 312
Query: 892 PTQRLLSQLKRGVLVASNSRGLFVQRLC 975
T +LL L RG+++ + L+ RLC
Sbjct: 313 YTNQLLDVLDRGLILQLQGQDLYAIRLC 340
>ref|NP_116032.1| interferon regulatory factor 5 isoform b [Homo sapiens].
Length = 498
Score = 107 bits (266), Expect = 2e-23
Identities = 98/328 (29%), Positives = 136/328 (41%), Gaps = 44/328 (13%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
+L+ W+V QV S Q+PG+ W + K +F IPW+HA + +D D FKAWA GKY
Sbjct: 16 RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYT 75
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
EG D PA WK LRCALNKS +F + + +PYK+Y + G PA SQ
Sbjct: 76 EGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNG--PAPTDSQP- 132
Query: 481 PSKRRHSSVTCEKEEDEV-----------------TTKNCTLSPSILQDPFKNELAETNX 609
P + E+EE+E+ T + TL P LQ P
Sbjct: 133 PEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPTLQPPTLQPPVVLGP 192
Query: 610 XXXXXXXXXXXXXXXXXXPE--------GRVTTEAPFQGDQVSLEHLLPPN--SDYSLLL 759
E G + P G+Q+ + L+ P+ L +
Sbjct: 193 PAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDLEI 252
Query: 760 TFIYDGHVVGEAQVQS-LDCRLV---AEPSGSQ------CSIEQVIFPKP------GPRE 891
F Y G + + CRL E + Q S+EQV FP P R
Sbjct: 253 KFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRF 312
Query: 892 PTQRLLSQLKRGVLVASNSRGLFVQRLC 975
T +LL L RG+++ + L+ RLC
Sbjct: 313 YTNQLLDVLDRGLILQLQGQDLYAIRLC 340
>ref|NP_002189.1| interferon regulatory factor 1 [Homo sapiens].
Length = 325
Score = 105 bits (261), Expect = 9e-23
Identities = 57/154 (37%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ Q+ S Q PG+ W + + +F+IPWKHA K + ++DA F++WAI G+YK
Sbjct: 7 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 66
Query: 304 EGDSE-GPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
G+ E P WK RCA+N + EEV + G+ +VYR+LPP T Q +K
Sbjct: 67 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLT-KNQRKERKS 125
Query: 481 PSKRRHSSVTCEKE--EDEVTTKNCTLSPSILQD 576
S R S K + T + LS S L D
Sbjct: 126 KSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPD 159
>ref|NP_002190.2| interferon regulatory factor 2 [Homo sapiens].
Length = 349
Score = 103 bits (257), Expect = 3e-22
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 8/168 (4%)
Frame = +1
Query: 124 KLRNWVVEQVESGQFPGVCWDDDAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 303
++R W+ EQ+ S PG+ W + K +F+IPW HA + + ++DA F+ WAI GK++
Sbjct: 7 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 66
Query: 304 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRDGAEPYKVYRLLPPGTLPAQPGSQKL 480
G D P WK RCA+N + EEV + + G ++VYR+LP P++ G K
Sbjct: 67 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSKKG--KK 124
Query: 481 PSKRRHSSVTCEKEEDEVTTKNCT-----LSP--SILQDPFKNELAET 603
P + V K+E ++ + LSP ++L KNE+ T
Sbjct: 125 PKTEKEDKVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSTIKNEVDST 172
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,947,432
Number of extensions: 1566850
Number of successful extensions: 6696
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 6659
Number of HSP's successfully gapped: 19
Length of query: 358
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 254
Effective length of database: 14,868,908
Effective search space: 3776702632
Effective search space used: 3776702632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007792
(1075 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 618 e-174
>Sscrofa_Chr07
|| Length = 134764511
Score = 618 bits (312), Expect = e-174
Identities = 336/340 (98%), Gaps = 3/340 (0%)
Strand = Plus / Minus
Query: 739 tcagactactcgctgctgctcaccttcatctacgacgggcatgtggtgggcgaggcccag 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80407277 tcagactactcgctgctgctcaccttcatctacgacgggcatgtggtgggcgaggcccag 80407218
Query: 799 gtgcagagcctggactgtcgccttgtggccgagccgtctggctcccagtgcagcatagag 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80407217 gtgcagagcctggactgtcgccttgtggccgagccgtctggctcccagtgcagcatagag 80407158
Query: 859 caggtgatctttcccaaacccggcccacgagagcccacccagcgcctactgagccagctc 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80407157 caggtgatctttcccaaacccggcccacgagagcccacccagcgcctactgagccagctc 80407098
Query: 919 aagagaggtgtcctggtggccagcaactcccgaggcctgttcgtgcagcgcctttgcccc 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80407097 aagagaggtgtcctggtggccagcaactcccgaggcctgttcgtgcagcgcctttgcccc 80407038
Query: 979 gt-cccatctcctggaacgcgccccaggctccccctggttcagg-ccgcatctgctgccc 1036
|| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 80407037 gtccccatctcctggaacgcgccccaggctccccctggtccaggcccgcatctgctgccc 80406978
Query: 1037 agcaacgagtgcgtggagctcttcagaa-cacctacttct 1075
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 80406977 agcaacgagtgcgtggagctcttcagaaccacctacttct 80406938
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 272 aggcctgggcgatatttaagggaaagtacaaggaaggggactccgaaggccctgccatct 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80409327 aggcctgggcgatatttaagggaaagtacaaggaaggggactccgaaggccctgccatct 80409268
Query: 332 ggaagactcgtctgcgctgtgccctcaacaagagtactgagtttgaggaggttcctgaga 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80409267 ggaagactcgtctgcgctgtgccctcaacaagagtactgagtttgaggaggttcctgaga 80409208
Query: 392 atggccacagggatggggccgagccctacaaggtgtaccggctgctgccaccaggcaccc 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80409207 atggccacagggatggggccgagccctacaaggtgtaccggctgctgccaccaggcaccc 80409148
Query: 452 tccccg 457
||||||
Sbjct: 80409147 tccccg 80409142
Score = 367 bits (185), Expect = 8e-99
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 90 caggatggcttcaggcagggctcgctgcacccgaaagctccggaactgggtggtggagca 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80409835 caggatggcttcaggcagggctcgctgcacccgaaagctccggaactgggtggtggagca 80409776
Query: 150 agtggagagcgggcagttcccaggagtgtgctgggacgacgacgccaagaccatgttccg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80409775 agtggagagcgggcagttcccaggagtgtgctgggacgacgacgccaagaccatgttccg 80409716
Query: 210 gattccctggaagcatgcgggcaagcaggatttccgggaggatcaggatgcagccttctt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80409715 gattccctggaagcatgcgggcaagcaggatttccgggaggatcaggatgcagccttctt 80409656
Query: 270 caagg 274
|||||
Sbjct: 80409655 caagg 80409651
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 457 gctcagccaggaagccagaaattaccatcaaagcgacgccacagttctgtgacctgtgag 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80408913 gctcagccaggaagccagaaattaccatcaaagcgacgccacagttctgtgacctgtgag 80408854
Query: 517 aaggaggaggacgaggttaccacaaagaactgcacactcagcccctccatcctccaggac 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80408853 aaggaggaggacgaggttaccacaaagaactgcacactcagcccctccatcctccaggac 80408794
Query: 577 cccttcaaaaatg 589
|||||||||||||
Sbjct: 80408793 cccttcaaaaatg 80408781
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 1 ctgtagaaaggggcggagaaatccagaagctgcctagccgggagctgagctgtggtcggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80410951 ctgtagaaaggggcggagaaatccagaagctgcctagccgggagctgagctgtggtcggc 80410892
Query: 61 tgagccctgggacagcctgcacagcagctcagg 93
|||||||||||||||||||||||||||||||||
Sbjct: 80410891 tgagccctgggacagcctgcacagcagctcagg 80410859
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 589 gagttggcagagaccaatgggggagcaggccattcagacttggggagcagcagcagcagc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80408679 gagttggcagagaccaatgggggagcaggccattcagacttggggagcagcagcagcagc 80408620
Query: 649 aacagccctgagtctccggaaggta 673
|||||||||||||||||||||||||
Sbjct: 80408619 aacagccctgagtctccggaaggta 80408595
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 669 aggtagggttaccactgaggcccctttccaaggagatcaagtgtccctggagcatctact 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80408221 aggtagggttaccactgaggcccctttccaaggagatcaagtgtccctggagcatctact 80408162
Query: 729 ccctccaaattcag 742
||||||||||||||
Sbjct: 80408161 ccctccaaattcag 80408148
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,975,563
Number of extensions: 642
Number of successful extensions: 642
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 640
Number of HSP's successfully gapped: 7
Length of query: 1075
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1054
Effective length of database: 2,808,413,156
Effective search space: 2960067466424
Effective search space used: 2960067466424
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)