Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007794
(1215 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014960.1| anaphase-promoting complex subunit 16 [Bos t... 169 6e-42
>ref|NP_001014960.1| anaphase-promoting complex subunit 16 [Bos taurus].
Length = 110
Score = 169 bits (427), Expect = 6e-42
Identities = 83/84 (98%), Positives = 83/84 (98%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLA LV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLAGLV 86
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 87 EELEADEWRFKPIEQLLGFTPSSG 110
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,051,223
Number of extensions: 1232067
Number of successful extensions: 2918
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2917
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,207,134
Effective search space: 4262140200
Effective search space used: 4262140200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007794
(1215 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861796.1| PREDICTED: hypothetical protein XP_856703 isofo... 169 6e-42
Alignment gi|XP_850568.1| PREDICTED: hypothetical protein XP_845475 isofo... 169 6e-42
Alignment gi|XP_861737.1| PREDICTED: hypothetical protein XP_856644 isofo... 105 7e-23
>ref|XP_861796.1| PREDICTED: hypothetical protein XP_856703 isoform 3 [Canis
familiaris].
Length = 110
Score = 169 bits (427), Expect = 6e-42
Identities = 83/84 (98%), Positives = 83/84 (98%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLA LV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLAGLV 86
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 87 EELEADEWRFKPIEQLLGFTPSSG 110
>ref|XP_850568.1| PREDICTED: hypothetical protein XP_845475 isoform 1 [Canis
familiaris].
Length = 110
Score = 169 bits (427), Expect = 6e-42
Identities = 83/84 (98%), Positives = 83/84 (98%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLA LV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLAGLV 86
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 87 EELEADEWRFKPIEQLLGFTPSSG 110
>ref|XP_861737.1| PREDICTED: hypothetical protein XP_856644 isoform 2 [Canis
familiaris].
Length = 85
Score = 105 bits (263), Expect = 7e-23
Identities = 58/84 (69%), Positives = 58/84 (69%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLED QQVARMEKLA LV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLED-------------------------QQVARMEKLAGLV 61
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 62 EELEADEWRFKPIEQLLGFTPSSG 85
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,935,543
Number of extensions: 1222475
Number of successful extensions: 2919
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2917
Number of HSP's successfully gapped: 3
Length of query: 405
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 300
Effective length of database: 15,374,224
Effective search space: 4612267200
Effective search space used: 4612267200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007794
(1215 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359281.1| PREDICTED: anaphase-promoting complex subuni... 170 1e-42
Alignment gi|XP_003359280.1| PREDICTED: anaphase-promoting complex subuni... 170 1e-42
Alignment gi|XP_003359279.1| PREDICTED: anaphase-promoting complex subuni... 170 1e-42
Alignment gi|NP_001177154.1| anaphase promoting complex subunit 16 [Sus s... 170 1e-42
>ref|XP_003359281.1| PREDICTED: anaphase-promoting complex subunit 16-like isoform 3
[Sus scrofa].
Length = 110
Score = 170 bits (431), Expect = 1e-42
Identities = 84/84 (100%), Positives = 84/84 (100%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 86
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 87 EELEADEWRFKPIEQLLGFTPSSG 110
>ref|XP_003359280.1| PREDICTED: anaphase-promoting complex subunit 16-like isoform 2
[Sus scrofa].
Length = 110
Score = 170 bits (431), Expect = 1e-42
Identities = 84/84 (100%), Positives = 84/84 (100%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 86
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 87 EELEADEWRFKPIEQLLGFTPSSG 110
>ref|XP_003359279.1| PREDICTED: anaphase-promoting complex subunit 16-like isoform 1
[Sus scrofa].
Length = 110
Score = 170 bits (431), Expect = 1e-42
Identities = 84/84 (100%), Positives = 84/84 (100%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 86
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 87 EELEADEWRFKPIEQLLGFTPSSG 110
>ref|NP_001177154.1| anaphase promoting complex subunit 16 [Sus scrofa].
Length = 110
Score = 170 bits (431), Expect = 1e-42
Identities = 84/84 (100%), Positives = 84/84 (100%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 86
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 87 EELEADEWRFKPIEQLLGFTPSSG 110
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,104,913
Number of extensions: 853678
Number of successful extensions: 1835
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1833
Number of HSP's successfully gapped: 4
Length of query: 405
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 304
Effective length of database: 8,829,335
Effective search space: 2684117840
Effective search space used: 2684117840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007794
(1215 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079790.1| anaphase-promoting complex subunit 16 [Mus musc... 169 5e-42
>ref|NP_079790.1| anaphase-promoting complex subunit 16 [Mus musculus].
Length = 110
Score = 169 bits (427), Expect = 5e-42
Identities = 83/84 (98%), Positives = 83/84 (98%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLA LV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLAGLV 86
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 87 EELEADEWRFKPIEQLLGFTPSSG 110
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,887,992
Number of extensions: 1017428
Number of successful extensions: 2534
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2532
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 301
Effective length of database: 12,493,815
Effective search space: 3760638315
Effective search space used: 3760638315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007794
(1215 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_775744.1| anaphase-promoting complex subunit 16 isoform 1... 169 6e-42
Alignment gi|NP_001229475.1| anaphase-promoting complex subunit 16 isofor... 169 6e-42
Alignment gi|NP_001229476.1| anaphase-promoting complex subunit 16 isofor... 169 6e-42
Alignment gi|NP_001229477.1| anaphase-promoting complex subunit 16 isofor... 105 6e-23
>ref|NP_775744.1| anaphase-promoting complex subunit 16 isoform 1 [Homo sapiens].
Length = 110
Score = 169 bits (427), Expect = 6e-42
Identities = 83/84 (98%), Positives = 83/84 (98%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLA LV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLAGLV 86
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 87 EELEADEWRFKPIEQLLGFTPSSG 110
>ref|NP_001229475.1| anaphase-promoting complex subunit 16 isoform 1 [Homo sapiens].
Length = 110
Score = 169 bits (427), Expect = 6e-42
Identities = 83/84 (98%), Positives = 83/84 (98%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLA LV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLAGLV 86
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 87 EELEADEWRFKPIEQLLGFTPSSG 110
>ref|NP_001229476.1| anaphase-promoting complex subunit 16 isoform 1 [Homo sapiens].
Length = 110
Score = 169 bits (427), Expect = 6e-42
Identities = 83/84 (98%), Positives = 83/84 (98%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLA LV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLAGLV 86
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 87 EELEADEWRFKPIEQLLGFTPSSG 110
>ref|NP_001229477.1| anaphase-promoting complex subunit 16 isoform 2 [Homo sapiens].
Length = 85
Score = 105 bits (263), Expect = 6e-23
Identities = 58/84 (69%), Positives = 58/84 (69%)
Frame = +2
Query: 197 DLAPPRKALFTYPKGAGEMLEDGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLASLV 376
DLAPPRKALFTYPKGAGEMLED QQVARMEKLA LV
Sbjct: 27 DLAPPRKALFTYPKGAGEMLED-------------------------QQVARMEKLAGLV 61
Query: 377 EELEADEWRFKPIEQLLGFTPSSG 448
EELEADEWRFKPIEQLLGFTPSSG
Sbjct: 62 EELEADEWRFKPIEQLLGFTPSSG 85
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,035,481
Number of extensions: 1205727
Number of successful extensions: 2925
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2921
Number of HSP's successfully gapped: 4
Length of query: 405
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,835,944
Effective search space: 4450783200
Effective search space used: 4450783200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007794
(1215 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1039 0.0
Sscrofa_Chr04 72 8e-10
>Sscrofa_Chr14
|| Length = 153851969
Score = 1039 bits (524), Expect = 0.0
Identities = 524/524 (100%)
Strand = Plus / Plus
Query: 335 gatcagcaagttgctcggatggaaaaactagctagtttggtagaagagctggaggcagat 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81098971 gatcagcaagttgctcggatggaaaaactagctagtttggtagaagagctggaggcagat 81099030
Query: 395 gagtggcggtttaaacccatcgagcagcttttgggcttcacaccctcttcaggttgacct 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099031 gagtggcggtttaaacccatcgagcagcttttgggcttcacaccctcttcaggttgacct 81099090
Query: 455 tgcctggatgttcacctctggtgcacaagtacaggtccagcgagaaacttttgttacaga 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099091 tgcctggatgttcacctctggtgcacaagtacaggtccagcgagaaacttttgttacaga 81099150
Query: 515 ttacatagccatccagagactcacagctccatccccgaattgttatttcacatgcgtact 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099151 ttacatagccatccagagactcacagctccatccccgaattgttatttcacatgcgtact 81099210
Query: 575 tggtttctctgtatctatccacaagcaacaaaaacttaaatgtgtgatcttgcagggaga 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099211 tggtttctctgtatctatccacaagcaacaaaaacttaaatgtgtgatcttgcagggaga 81099270
Query: 635 atttttgtttgttttaaaaagtattgagaatcatatttagacaatcagtgtcagagaacc 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099271 atttttgtttgttttaaaaagtattgagaatcatatttagacaatcagtgtcagagaacc 81099330
Query: 695 aagaggtttgggtttaagagagatttataaaacttcacaagccaggacacatccccgaat 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099331 aagaggtttgggtttaagagagatttataaaacttcacaagccaggacacatccccgaat 81099390
Query: 755 tggccaactgaatggcatccctcctgtcattttgtgcagttcctagaatcctccacccct 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099391 tggccaactgaatggcatccctcctgtcattttgtgcagttcctagaatcctccacccct 81099450
Query: 815 caagtccaaggtcaagaactggagttagaaaatacagcatttct 858
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81099451 caagtccaaggtcaagaactggagttagaaaatacagcatttct 81099494
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 90 agtgaagtgagaattctactggagaggaaatggctgcctcatcatcatcctcctcagctg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81092532 agtgaagtgagaattctactggagaggaaatggctgcctcatcatcatcctcctcagctg 81092591
Query: 150 gtggggtcagcggaagttctgtcactggatctggtttcagtgtctcagaccttgccccac 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81092592 gtggggtcagcggaagttctgtcactggatctggtttcagtgtctcagaccttgccccac 81092651
Query: 210 cacggaaagcccttttcacctaccccaaaggagctggagagatgttagaag 260
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81092652 cacggaaagcccttttcacctaccccaaaggagctggagagatgttagaag 81092702
Score = 165 bits (83), Expect = 7e-38
Identities = 90/91 (98%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 gagcacggcgccgccccttgtcgatgttaactcggccgcaccagtcggccttgggggcgg 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81089482 gagcacggcgccgccc-ttgtcgatgttaactcggccgcaccagtcggccttgggggcgg 81089540
Query: 61 ggctgtaggggaaagtgccaaagctgctgag 91
|||||||||||||||||||||||||||||||
Sbjct: 81089541 ggctgtaggggaaagtgccaaagctgctgag 81089571
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 259 agatggctctgagagattcctctgtgaatccgttttcagttatcaggtggcatcgacgct 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81098176 agatggctctgagagattcctctgtgaatccgttttcagttatcaggtggcatcgacgct 81098235
Query: 319 taaacaggtgaaacatg 335
|||||||||||||||||
Sbjct: 81098236 taaacaggtgaaacatg 81098252
Score = 153 bits (77), Expect = 3e-34
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 892 gcatttctgacctaaaacagttctttctgcaaatgaatgtggtttccactcaggacctgt 951
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 81099528 gcatttctgacctaaaacagttctttctgcaaatgaatgtggtttcaactcaggacctgt 81099587
Query: 952 ccaaattaggaatttttaatggttggggg 980
||||||||||||||||||| ||||||||
Sbjct: 81099588 ccaaattaggaatttttaaatgttggggg 81099616
>Sscrofa_Chr04
|| Length = 143465943
Score = 71.9 bits (36), Expect = 8e-10
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 892 gcatttctgacctaaaacagttctttctgcaaatgaatgtggtttccactcaggacctgt 951
||||||||||||||| |||||| ||||||| ||||||||| |||| | |||||||| |
Sbjct: 134214152 gcatttctgacctaacccagttccttctgcagatgaatgtgatttcaattcaggaccaat 134214093
Query: 952 ccaaattaggaa 963
||||||||||||
Sbjct: 134214092 ccaaattaggaa 134214081
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,212,992
Number of extensions: 413
Number of successful extensions: 413
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 6
Length of query: 1215
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1194
Effective length of database: 2,808,413,156
Effective search space: 3353245308264
Effective search space used: 3353245308264
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)