Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007810
(1059 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015567.1| serine-threonine kinase receptor-associated ... 441 e-124
Alignment gi|XP_002685607.1| PREDICTED: sperm associated antigen 16 [Bos ... 63 4e-10
Alignment gi|NP_777088.1| platelet-activating factor acetylhydrolase IB s... 62 1e-09
Alignment gi|NP_001178407.1| transcription initiation factor TFIID subuni... 58 2e-08
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 58 2e-08
Alignment gi|XP_002698507.1| PREDICTED: TAF5 RNA polymerase II, TATA box ... 58 2e-08
Alignment gi|NP_001179317.1| WD repeat-containing protein 3 [Bos taurus]. 57 3e-08
Alignment gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus]. 57 3e-08
Alignment gi|XP_002686143.1| PREDICTED: WD repeat domain 3 [Bos taurus]. 57 3e-08
Alignment gi|XP_002700435.1| PREDICTED: TAF5-like RNA polymerase II, p300... 57 4e-08
>ref|NP_001015567.1| serine-threonine kinase receptor-associated protein [Bos taurus].
Length = 350
Score = 441 bits (1135), Expect = e-124
Identities = 217/239 (90%), Positives = 221/239 (92%)
Frame = +3
Query: 309 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 488
MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
Sbjct: 1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 60
Query: 489 AVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 668
AVWGATLN VWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
Sbjct: 61 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 120
Query: 669 DKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 848
DKLLRIYDLNKPEAEPKEISGH+SGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
Sbjct: 121 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 180
Query: 849 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATHHSASLHPEKDFFV 1025
NFNMSVSSMEYIPEGEILVITYGRSIAFHSA+SLDPIKSFEAPAT +SASLHPEK+F V
Sbjct: 181 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFVV 239
>ref|XP_002685607.1| PREDICTED: sperm associated antigen 16 [Bos taurus].
Length = 628
Score = 63.2 bits (152), Expect = 4e-10
Identities = 64/225 (28%), Positives = 92/225 (40%), Gaps = 4/225 (1%)
Frame = +3
Query: 267 DPQLSCGIARLAAAMAMRQ--TPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLR 440
D +SCG R+ + + + LT GHT + + F P G L ++ D L
Sbjct: 362 DLLVSCGEDRVWKMVGLPKGNVLLTGLGHTDWLSNCCFH---PSGNKLATSSGDTTVKLW 418
Query: 441 QGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIV 617
G+ I TF GH AVW T + +WD S TL H V
Sbjct: 419 DVSKGNCILTFEGHTHAVWSCTWHSCGDFVASSSLDTTSKIWDVNSERCRYTLYGHTDSV 478
Query: 618 KTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADD 797
+++F SN LLTG DK L I+D + E + + GH I A + I S D
Sbjct: 479 NSIEFFPYSNTLLTGSADKSLSIWDARTGKCE-QSLYGHMHSINDATFTPRGHMIASCDA 537
Query: 798 KTV-RLWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIA 929
V +LWD + + S++ S P E+ + GR +A
Sbjct: 538 CGVTKLWDFRKLLPMVSIDVGPS-------PGNEVTFDSSGRVLA 575
>ref|NP_777088.1| platelet-activating factor acetylhydrolase IB subunit alpha [Bos
taurus].
Length = 410
Score = 61.6 bits (148), Expect = 1e-09
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T GH V +A I P G ++SA +D + + TG + TF GH+ V N
Sbjct: 187 TMHGHDHNVSSVA---IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNY------------- 650
VW + + L H+H+V+ + + +S+Y
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 303
Query: 651 -------LLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTV 806
LL+G +DK ++++D++ + GH + ++ L+ S K ILS ADDKT+
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 807 RLWDHATMTEVKSLN 851
R+WD+ +K+LN
Sbjct: 363 RVWDYKNKRCMKTLN 377
Score = 48.9 bits (115), Expect = 7e-06
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Frame = +3
Query: 339 SGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXX 518
SGH PV + F P ++SA +D + +TGD+ T GH +V + +
Sbjct: 105 SGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHS 161
Query: 519 XXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDL 695
+WD + + T+ H H V +V + +++++ +DK ++++++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV 221
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHAT 827
K +GH ++ + I S ++D+TVR+W AT
Sbjct: 222 QTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
>ref|NP_001178407.1| transcription initiation factor TFIID subunit 5 [Bos taurus].
Length = 800
Score = 57.8 bits (138), Expect = 2e-08
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 6/197 (3%)
Frame = +3
Query: 342 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 521
GH PV D FS PYGY+ +S D L D + F GH V +
Sbjct: 583 GHNYPVWDTQFS---PYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNS 639
Query: 522 XXXXXXXXXXXXXVWDAVSGDEL-MTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 698
+WD ++G+ + + HK + ++ F+ + +L TG D + ++D+
Sbjct: 640 NYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIG 699
Query: 699 KPEAEPKEISGHSSGIKKALWCSEDKQILSAD--DKTVRLWDHA-TMTEVKSLNFNMSVS 869
E+ GH+ + +L S D +IL++ D TVRLWD +V++ +F +
Sbjct: 700 H-GLMVGELKGHTDTV-CSLRFSRDGEILASGSMDNTVRLWDAVKAFEDVETDDFTTATG 757
Query: 870 SMEYIPEG--EILVITY 914
+ +PE E+L+ TY
Sbjct: 758 HIN-LPENSQELLLGTY 773
Score = 50.8 bits (120), Expect = 2e-06
Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 6/216 (2%)
Frame = +3
Query: 342 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 521
GH+ PV +FS P +L+S+ +DG L T + + GH VW +
Sbjct: 541 GHSGPVYGASFS---PDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYG 597
Query: 522 XXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 698
+W L A H V F +SNY+ TG D+ +R++D+
Sbjct: 598 YYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVL 657
Query: 699 KPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWD--HATMT-EVKSLNFNMSV 866
+ +GH I + + + + A D V LWD H M E+K +V
Sbjct: 658 NGNC-VRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK--GHTDTV 714
Query: 867 SSMEYIPEGEILVITYGRSIAFHSAISL-DPIKSFE 971
S+ + +GEIL S + + + L D +K+FE
Sbjct: 715 CSLRFSRDGEILA-----SGSMDNTVRLWDAVKAFE 745
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 57.8 bits (138), Expect = 2e-08
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 12/199 (6%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T SGH + D+A+S + L+SA D + +G + T GH V+ N
Sbjct: 82 TISGHKLGISDVAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIY 689
+WD +G L TL AH V V F +D + +++ D L RI+
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 690 DLNKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHA------TMTEVKSL 848
D + I + + + K IL+A D T++LWD++ T T K+
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 849 NF----NMSVSSMEYIPEG 893
+ N SV+ ++I G
Sbjct: 259 KYCIFANFSVTGGKWIVSG 277
Score = 54.7 bits (130), Expect = 1e-07
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Frame = +3
Query: 594 TLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSE 770
TLA H V +V F+ + +L + DKL++I+ + E K ISGH GI W S+
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 98
Query: 771 DKQILSA-DDKTVRLWDHATMTEVKSLNFNMS-VSSMEYIPEGEILV 905
++SA DDKT+++WD ++ +K+L + + V + P+ ++V
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145
>ref|XP_002698507.1| PREDICTED: TAF5 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 100kDa [Bos taurus].
Length = 800
Score = 57.8 bits (138), Expect = 2e-08
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 6/197 (3%)
Frame = +3
Query: 342 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 521
GH PV D FS PYGY+ +S D L D + F GH V +
Sbjct: 583 GHNYPVWDTQFS---PYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNS 639
Query: 522 XXXXXXXXXXXXXVWDAVSGDEL-MTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 698
+WD ++G+ + + HK + ++ F+ + +L TG D + ++D+
Sbjct: 640 NYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIG 699
Query: 699 KPEAEPKEISGHSSGIKKALWCSEDKQILSAD--DKTVRLWDHA-TMTEVKSLNFNMSVS 869
E+ GH+ + +L S D +IL++ D TVRLWD +V++ +F +
Sbjct: 700 H-GLMVGELKGHTDTV-CSLRFSRDGEILASGSMDNTVRLWDAVKAFEDVETDDFTTATG 757
Query: 870 SMEYIPEG--EILVITY 914
+ +PE E+L+ TY
Sbjct: 758 HIN-LPENSQELLLGTY 773
Score = 50.8 bits (120), Expect = 2e-06
Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 6/216 (2%)
Frame = +3
Query: 342 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 521
GH+ PV +FS P +L+S+ +DG L T + + GH VW +
Sbjct: 541 GHSGPVYGASFS---PDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYG 597
Query: 522 XXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 698
+W L A H V F +SNY+ TG D+ +R++D+
Sbjct: 598 YYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVL 657
Query: 699 KPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWD--HATMT-EVKSLNFNMSV 866
+ +GH I + + + + A D V LWD H M E+K +V
Sbjct: 658 NGNC-VRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK--GHTDTV 714
Query: 867 SSMEYIPEGEILVITYGRSIAFHSAISL-DPIKSFE 971
S+ + +GEIL S + + + L D +K+FE
Sbjct: 715 CSLRFSRDGEILA-----SGSMDNTVRLWDAVKAFE 745
>ref|NP_001179317.1| WD repeat-containing protein 3 [Bos taurus].
Length = 943
Score = 57.0 bits (136), Expect = 3e-08
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Frame = +3
Query: 384 TPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXV 563
+P G L +DG + +G+ TF GHK A+ + V
Sbjct: 74 SPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITSLKYDQLGGRLASGSKDTDIIV 133
Query: 564 WDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSS 740
WD ++ L L HK + F ++ N L+T G+D +++ +DL+ K + GH +
Sbjct: 134 WDVINESGLYRLKGHKDAITQALFLREKNLLVTSGKDTMVKWWDLDTQHCF-KTMVGHRT 192
Query: 741 GIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVK 842
+ + SE+K++++ A D +R WD + + E++
Sbjct: 193 EVWGLVLVSEEKRLITGASDSELRAWDISYLQEIE 227
>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
Length = 415
Score = 57.0 bits (136), Expect = 3e-08
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 2/167 (1%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T +GH+ ++ L+F+ G +I+ D + + DTG + T +GH + A N
Sbjct: 214 TLTGHSAEIISLSFN---TSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFN 270
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIY 689
+WDAV+G + TL H + F + T D RI+
Sbjct: 271 WDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIF 330
Query: 690 DLNKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHAT 827
E K + GH I K + + ++L+ + DKT R+WD T
Sbjct: 331 SAATRECVTK-LEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQT 376
>ref|XP_002686143.1| PREDICTED: WD repeat domain 3 [Bos taurus].
Length = 943
Score = 57.0 bits (136), Expect = 3e-08
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Frame = +3
Query: 384 TPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXV 563
+P G L +DG + +G+ TF GHK A+ + V
Sbjct: 74 SPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITSLKYDQLGGRLASGSKDTDIIV 133
Query: 564 WDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSS 740
WD ++ L L HK + F ++ N L+T G+D +++ +DL+ K + GH +
Sbjct: 134 WDVINESGLYRLKGHKDAITQALFLREKNLLVTSGKDTMVKWWDLDTQHCF-KTMVGHRT 192
Query: 741 GIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVK 842
+ + SE+K++++ A D +R WD + + E++
Sbjct: 193 EVWGLVLVSEEKRLITGASDSELRAWDISYLQEIE 227
>ref|XP_002700435.1| PREDICTED: TAF5-like RNA polymerase II, p300/CBP-associated factor
(PCAF)-associated factor, 65kDa [Bos taurus].
Length = 600
Score = 56.6 bits (135), Expect = 4e-08
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Frame = +3
Query: 342 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 521
GH PV DL I+P+ F SA D L D + + GH V +
Sbjct: 393 GHAYPVWDL---DISPHSLFFASASYDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNS 449
Query: 522 XXXXXXXXXXXXXVWDAVSGDEL-MTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 698
+W A G+ + + H V+ + F+ + YL++ G+D+LL+++DL
Sbjct: 450 NYLATGSTDKTVRLWSAQQGNSVRLFTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDLA 509
Query: 699 KPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWD 818
K++ GH+ I + + I SA D +VR+WD
Sbjct: 510 SGTLY-KDLHGHTDDITSVTFSLDSSVIASASMDNSVRIWD 549
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,534,025
Number of extensions: 1112691
Number of successful extensions: 3466
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 3408
Number of HSP's successfully gapped: 31
Length of query: 353
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 250
Effective length of database: 14,273,310
Effective search space: 3568327500
Effective search space used: 3568327500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007810
(1059 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543790.1| PREDICTED: similar to serine/threonine kinase r... 442 e-124
Alignment gi|XP_866613.1| PREDICTED: similar to serine/threonine kinase r... 433 e-121
Alignment gi|XP_537775.2| PREDICTED: similar to platelet-activating facto... 62 1e-09
Alignment gi|XP_854482.1| PREDICTED: similar to platelet-activating facto... 62 1e-09
Alignment gi|XP_868508.1| PREDICTED: similar to platelet-activating facto... 62 1e-09
Alignment gi|XP_536057.2| PREDICTED: similar to sperm associated antigen ... 61 2e-09
Alignment gi|XP_868519.1| PREDICTED: similar to platelet-activating facto... 60 5e-09
Alignment gi|XP_540261.2| PREDICTED: similar to WD-repeat protein 3 [Cani... 59 8e-09
Alignment gi|XP_862444.1| PREDICTED: similar to WD repeat and SOCS box co... 55 1e-07
Alignment gi|XP_534697.2| PREDICTED: similar to WD repeat and SOCS box co... 55 1e-07
>ref|XP_543790.1| PREDICTED: similar to serine/threonine kinase receptor associated
protein (predicted) isoform 1 [Canis familiaris].
Length = 350
Score = 442 bits (1136), Expect = e-124
Identities = 217/239 (90%), Positives = 221/239 (92%)
Frame = +3
Query: 309 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 488
MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
Sbjct: 1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 60
Query: 489 AVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 668
AVWGATLN VWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
Sbjct: 61 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 120
Query: 669 DKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 848
DKLLRIYDLNKPEAEPKEISGH+SGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
Sbjct: 121 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 180
Query: 849 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATHHSASLHPEKDFFV 1025
NFNMSVSSMEYIPEGEILVITYGRSIAFHSA+SLDPIKSFEAPAT +SASLHPEK+F V
Sbjct: 181 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLV 239
>ref|XP_866613.1| PREDICTED: similar to serine/threonine kinase receptor associated
protein (predicted) isoform 2 [Canis familiaris].
Length = 362
Score = 433 bits (1113), Expect = e-121
Identities = 217/251 (86%), Positives = 221/251 (88%), Gaps = 12/251 (4%)
Frame = +3
Query: 309 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACK------------DGKPMLRQGDT 452
MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACK DGKPMLRQGDT
Sbjct: 1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKGERVTCLFKCVLDGKPMLRQGDT 60
Query: 453 GDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDF 632
GDWIGTFLGHKGAVWGATLN VWDAVSGDELMTLAHKHIVKTVDF
Sbjct: 61 GDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDF 120
Query: 633 TQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRL 812
TQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGH+SGIKKALWCSEDKQILSADDKTVRL
Sbjct: 121 TQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRL 180
Query: 813 WDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATHHS 992
WDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSA+SLDPIKSFEAPAT +S
Sbjct: 181 WDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINS 240
Query: 993 ASLHPEKDFFV 1025
ASLHPEK+F V
Sbjct: 241 ASLHPEKEFLV 251
>ref|XP_537775.2| PREDICTED: similar to platelet-activating factor acetylhydrolase
beta subunit isoform 1 [Canis familiaris].
Length = 372
Score = 61.6 bits (148), Expect = 1e-09
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T GH V +A I P G ++SA +D + + TG + TF GH+ V N
Sbjct: 149 TMHGHDHNVSSVA---IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 205
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNY------------- 650
VW + + L H+H+V+ + + +S+Y
Sbjct: 206 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 265
Query: 651 -------LLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTV 806
LL+G +DK ++++D++ + GH + ++ L+ S K ILS ADDKT+
Sbjct: 266 SGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTL 324
Query: 807 RLWDHATMTEVKSLN 851
R+WD+ +K+LN
Sbjct: 325 RVWDYKNKRCMKTLN 339
Score = 49.3 bits (116), Expect = 6e-06
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Frame = +3
Query: 339 SGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXX 518
SGH PV + F P ++SA +D + +TGD+ T GH +V + +
Sbjct: 67 SGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 123
Query: 519 XXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDL 695
+WD + + T+ H H V +V + +++++ +DK ++++++
Sbjct: 124 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV 183
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHAT 827
K +GH ++ + I S ++D+TVR+W AT
Sbjct: 184 QTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 227
>ref|XP_854482.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
beta subunit isoform 2 [Canis familiaris].
Length = 410
Score = 61.6 bits (148), Expect = 1e-09
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T GH V +A I P G ++SA +D + + TG + TF GH+ V N
Sbjct: 187 TMHGHDHNVSSVA---IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNY------------- 650
VW + + L H+H+V+ + + +S+Y
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 303
Query: 651 -------LLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTV 806
LL+G +DK ++++D++ + GH + ++ L+ S K ILS ADDKT+
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 807 RLWDHATMTEVKSLN 851
R+WD+ +K+LN
Sbjct: 363 RVWDYKNKRCMKTLN 377
Score = 49.3 bits (116), Expect = 6e-06
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Frame = +3
Query: 339 SGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXX 518
SGH PV + F P ++SA +D + +TGD+ T GH +V + +
Sbjct: 105 SGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 519 XXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDL 695
+WD + + T+ H H V +V + +++++ +DK ++++++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV 221
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHAT 827
K +GH ++ + I S ++D+TVR+W AT
Sbjct: 222 QTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
>ref|XP_868508.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
beta subunit isoform 3 [Canis familiaris].
Length = 345
Score = 61.6 bits (148), Expect = 1e-09
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T GH V +A I P G ++SA +D + + TG + TF GH+ V N
Sbjct: 122 TMHGHDHNVSSVA---IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 178
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNY------------- 650
VW + + L H+H+V+ + + +S+Y
Sbjct: 179 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 238
Query: 651 -------LLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTV 806
LL+G +DK ++++D++ + GH + ++ L+ S K ILS ADDKT+
Sbjct: 239 SGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTL 297
Query: 807 RLWDHATMTEVKSLN 851
R+WD+ +K+LN
Sbjct: 298 RVWDYKNKRCMKTLN 312
Score = 49.3 bits (116), Expect = 6e-06
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Frame = +3
Query: 339 SGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXX 518
SGH PV + F P ++SA +D + +TGD+ T GH +V + +
Sbjct: 40 SGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 96
Query: 519 XXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDL 695
+WD + + T+ H H V +V + +++++ +DK ++++++
Sbjct: 97 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV 156
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHAT 827
K +GH ++ + I S ++D+TVR+W AT
Sbjct: 157 QTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 200
>ref|XP_536057.2| PREDICTED: similar to sperm associated antigen 16 isoform 1 [Canis
familiaris].
Length = 681
Score = 61.2 bits (147), Expect = 2e-09
Identities = 58/203 (28%), Positives = 83/203 (40%), Gaps = 4/203 (1%)
Frame = +3
Query: 267 DPQLSCGIARLAAAMAMRQTPL--TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLR 440
D ++CG RL + + + + T GHT + + F P G L ++ D L
Sbjct: 464 DILVTCGEDRLWKVVGLPKGNVLHTGFGHTDWLSNCCFH---PSGNKLATSSGDTTVKLW 520
Query: 441 QGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIV 617
G+ I TF GH AVW T + +WD S TL H V
Sbjct: 521 DLSKGNCILTFEGHSHAVWSCTWHSCGDFVASSSLDTTSKIWDVNSERCRCTLYGHTDSV 580
Query: 618 KTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADD 797
+++F SN LLTG DK L I+D E + + GH I A + I S D
Sbjct: 581 NSIEFFPCSNTLLTGSADKSLSIWDARTGNCE-QSLYGHMHSINDATFTPRGHMIASCDA 639
Query: 798 KTV-RLWDHATMTEVKSLNFNMS 863
V +LWD + + S++ S
Sbjct: 640 CGVTKLWDFRKLLPIVSIDIGPS 662
>ref|XP_868519.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
beta subunit isoform 5 [Canis familiaris].
Length = 415
Score = 59.7 bits (143), Expect = 5e-09
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 27/200 (13%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T GH V +A I P G ++SA +D + + TG + TF GH+ V N
Sbjct: 187 TMHGHDHNVSSVA---IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNY------------- 650
VW + + L H+H+V+ + + +S+Y
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSEEEN 303
Query: 651 ------------LLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILS-A 791
LL+G +DK ++++D++ + GH + ++ L+ S K ILS A
Sbjct: 304 PRTKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCA 362
Query: 792 DDKTVRLWDHATMTEVKSLN 851
DDKT+R+WD+ +K+LN
Sbjct: 363 DDKTLRVWDYKNKRCMKTLN 382
Score = 49.3 bits (116), Expect = 6e-06
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Frame = +3
Query: 339 SGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXX 518
SGH PV + F P ++SA +D + +TGD+ T GH +V + +
Sbjct: 105 SGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 519 XXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDL 695
+WD + + T+ H H V +V + +++++ +DK ++++++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV 221
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHAT 827
K +GH ++ + I S ++D+TVR+W AT
Sbjct: 222 QTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
>ref|XP_540261.2| PREDICTED: similar to WD-repeat protein 3 [Canis familiaris].
Length = 943
Score = 58.9 bits (141), Expect = 8e-09
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 2/157 (1%)
Frame = +3
Query: 384 TPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXV 563
+P G L +DG + +G+ TF GHK A+ + V
Sbjct: 74 SPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITSLKYDQLGGRLASGSKDTDTIV 133
Query: 564 WDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSS 740
WD ++ L L HK V F ++ N LLT G+D +++ +DL+ K + GH +
Sbjct: 134 WDVINESGLYRLKGHKDAVTQALFLREKNLLLTSGKDTMVKWWDLDTQHCF-KTMVGHRT 192
Query: 741 GIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVKSL 848
+ + SE+K++++ + D +R WD + EV+ L
Sbjct: 193 EVWGLVLVSEEKRLITGSSDSELRAWDITYLQEVEDL 229
>ref|XP_862444.1| PREDICTED: similar to WD repeat and SOCS box containing protein 2
(WSB-2) (CS box-containing WD protein) isoform 3 [Canis
familiaris].
Length = 357
Score = 54.7 bits (130), Expect = 1e-07
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Frame = +3
Query: 561 VWDAVSGDELMTLA-HKHIVKTVDFTQDSNYLL-TGGQDKLLRIYDLNKPEAEPKEISGH 734
+W+ +G L+ L+ H+ +V+ + FT + +L + +DK LRI+DLNK + + +SGH
Sbjct: 139 IWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGH 198
Query: 735 SSGIKKALWC---SEDKQIL--SADDKTVRLWDHATMTEVKSL-NFNMSVSSMEYIPEGE 896
+ +C S D +L +A +K+V LW + T ++ L SV S ++ P+
Sbjct: 199 LQWV----YCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSA 254
Query: 897 ILV-ITYGRSIAFHSAISLDPIKSFEAPATHHSASLHPEKD 1016
+LV +Y ++ I DP HH+ L P D
Sbjct: 255 LLVTASYDTNV-----IMWDPYTGERLRLLHHT-QLDPPMD 289
>ref|XP_534697.2| PREDICTED: similar to WD repeat and SOCS box containing protein 2
(WSB-2) (CS box-containing WD protein) isoform 1 [Canis
familiaris].
Length = 406
Score = 54.7 bits (130), Expect = 1e-07
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Frame = +3
Query: 561 VWDAVSGDELMTLA-HKHIVKTVDFTQDSNYLL-TGGQDKLLRIYDLNKPEAEPKEISGH 734
+W+ +G L+ L+ H+ +V+ + FT + +L + +DK LRI+DLNK + + +SGH
Sbjct: 139 IWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGH 198
Query: 735 SSGIKKALWC---SEDKQIL--SADDKTVRLWDHATMTEVKSL-NFNMSVSSMEYIPEGE 896
+ +C S D +L +A +K+V LW + T ++ L SV S ++ P+
Sbjct: 199 LQWV----YCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSA 254
Query: 897 ILV-ITYGRSIAFHSAISLDPIKSFEAPATHHSASLHPEKD 1016
+LV +Y ++ I DP HH+ L P D
Sbjct: 255 LLVTASYDTNV-----IMWDPYTGERLRLLHHT-QLDPPMD 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,060,483
Number of extensions: 1099214
Number of successful extensions: 3650
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 3561
Number of HSP's successfully gapped: 26
Length of query: 353
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 249
Effective length of database: 15,407,560
Effective search space: 3836482440
Effective search space used: 3836482440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007810
(1059 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355612.1| PREDICTED: serine-threonine kinase receptor-... 443 e-125
Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase IB s... 62 5e-10
Alignment gi|XP_003126748.2| PREDICTED: apoptotic protease-activating fac... 59 3e-09
Alignment gi|XP_003355278.1| PREDICTED: WD repeat-containing protein 3-li... 58 1e-08
Alignment gi|XP_001929213.3| PREDICTED: WD repeat-containing protein 3 [S... 58 1e-08
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 58 1e-08
Alignment gi|XP_001929370.2| PREDICTED: transcription initiation factor T... 56 4e-08
Alignment gi|XP_001926012.1| PREDICTED: WD repeat and SOCS box-containing... 56 4e-08
Alignment gi|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/... 53 2e-07
Alignment gi|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [... 53 3e-07
>ref|XP_003355612.1| PREDICTED: serine-threonine kinase receptor-associated protein-like
[Sus scrofa].
Length = 350
Score = 443 bits (1140), Expect = e-125
Identities = 219/239 (91%), Positives = 221/239 (92%)
Frame = +3
Query: 309 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 488
MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
Sbjct: 1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 60
Query: 489 AVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 668
AVWGATLN VWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
Sbjct: 61 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 120
Query: 669 DKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 848
DKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
Sbjct: 121 DKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 180
Query: 849 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATHHSASLHPEKDFFV 1025
NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPAT +SASLHPEK+F V
Sbjct: 181 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHPEKEFLV 239
>ref|NP_999415.1| platelet-activating factor acetylhydrolase IB subunit alpha [Sus
scrofa].
Length = 410
Score = 62.0 bits (149), Expect = 5e-10
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T GH V +A I P G ++SA +D + + TG + TF GH+ V N
Sbjct: 187 TMHGHDHNVSSVA---IMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNY------------- 650
VW + + L H+H+V+ + + +S+Y
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 303
Query: 651 -------LLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTV 806
LL+G +DK ++++D++ + GH + ++ L+ S K ILS ADDKT+
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 807 RLWDHATMTEVKSLN 851
R+WD+ +K+LN
Sbjct: 363 RVWDYKNKRCMKTLN 377
Score = 49.3 bits (116), Expect = 4e-06
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Frame = +3
Query: 339 SGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXX 518
SGH PV + F P ++SA +D + +TGD+ T GH +V + +
Sbjct: 105 SGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 519 XXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDL 695
+WD + + T+ H H V +V + +++++ +DK ++++++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEV 221
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHAT 827
K +GH ++ + I S ++D+TVR+W AT
Sbjct: 222 QTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
>ref|XP_003126748.2| PREDICTED: apoptotic protease-activating factor 1 isoform 3,
partial [Sus scrofa].
Length = 1012
Score = 59.3 bits (142), Expect = 3e-09
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 5/192 (2%)
Frame = +3
Query: 345 HTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXX 524
HT V FS G + S D + + +TG+ + H+ V +
Sbjct: 377 HTDAVYHACFS---EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSADDR 433
Query: 525 XXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDL 695
+W++V+G+ + + H V FT +SN+LL TG D L+++DL
Sbjct: 434 FIATCSVDKKVKIWNSVTGELVQSYDEHSEQVNCCHFTNNSNHLLLATGSSDYFLKLWDL 493
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNF-NMSVS 869
N+ E + GH++ + + +DK + S D T++LWD + E KS+N ++
Sbjct: 494 NQKECR-NTMFGHTNSVSHCRFSPDDKLLASCSADGTLKLWDVKSANERKSINVKQFFLN 552
Query: 870 SMEYIPEGEILV 905
S E + E++V
Sbjct: 553 SEESQEDMEVMV 564
>ref|XP_003355278.1| PREDICTED: WD repeat-containing protein 3-like [Sus scrofa].
Length = 943
Score = 57.8 bits (138), Expect = 1e-08
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Frame = +3
Query: 384 TPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXV 563
+P G L +DG + +G+ TF GHK AV + V
Sbjct: 74 SPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAVTSLKYDQLGGRLASGSKDTDIIV 133
Query: 564 WDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSS 740
WD ++ L L HK + F ++ N L++ G+D +++ +DL+ K + GH +
Sbjct: 134 WDVINESGLYRLKGHKDAITQALFLREKNLLVSSGKDTMVKWWDLDTQHCF-KTVVGHRT 192
Query: 741 GIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVK 842
+ + SE+K++++ A D +R WD A + E++
Sbjct: 193 EVWGLVLVSEEKRLITGASDSELRAWDIAYLEEIE 227
>ref|XP_001929213.3| PREDICTED: WD repeat-containing protein 3 [Sus scrofa].
Length = 758
Score = 57.8 bits (138), Expect = 1e-08
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Frame = +3
Query: 384 TPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXV 563
+P G L +DG + +G+ TF GHK AV + V
Sbjct: 74 SPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAVTSLKYDQLGGRLASGSKDTDIIV 133
Query: 564 WDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSS 740
WD ++ L L HK + F ++ N L++ G+D +++ +DL+ K + GH +
Sbjct: 134 WDVINESGLYRLKGHKDAITQALFLREKNLLVSSGKDTMVKWWDLDTQHCF-KTVVGHRT 192
Query: 741 GIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVK 842
+ + SE+K++++ A D +R WD A + E++
Sbjct: 193 EVWGLVLVSEEKRLITGASDSELRAWDIAYLEEIE 227
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 57.8 bits (138), Expect = 1e-08
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 12/199 (6%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T SGH + D+A+S + L+SA D + +G + T GH V+ N
Sbjct: 82 TISGHKLGISDVAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIY 689
+WD +G L TL AH V V F +D + +++ D L RI+
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 690 DLNKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHA------TMTEVKSL 848
D + I + + + K IL+A D T++LWD++ T T K+
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 849 NF----NMSVSSMEYIPEG 893
+ N SV+ ++I G
Sbjct: 259 KYCIFANFSVTGGKWIVSG 277
Score = 54.7 bits (130), Expect = 9e-08
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Frame = +3
Query: 594 TLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSE 770
TLA H V +V F+ + +L + DKL++I+ + E K ISGH GI W S+
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 98
Query: 771 DKQILSA-DDKTVRLWDHATMTEVKSLNFNMS-VSSMEYIPEGEILV 905
++SA DDKT+++WD ++ +K+L + + V + P+ ++V
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145
>ref|XP_001929370.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Sus
scrofa].
Length = 662
Score = 55.8 bits (133), Expect = 4e-08
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Frame = +3
Query: 342 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 521
GH PV D FS PYGY+ +S D L D + F GH V +
Sbjct: 445 GHNYPVWDTQFS---PYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNS 501
Query: 522 XXXXXXXXXXXXXVWDAVSGDEL-MTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 698
+WD ++G+ + + HK + ++ F+ + +L TG D + ++D+
Sbjct: 502 NYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIG 561
Query: 699 KPEAEPKEISGHSSGIKKALWCSEDKQILSAD--DKTVRLWD 818
E+ GH+ + +L S D +IL++ D TVRLWD
Sbjct: 562 H-GLMVGELKGHTDTV-CSLRFSRDGEILASGSMDNTVRLWD 601
Score = 50.8 bits (120), Expect = 1e-06
Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 6/216 (2%)
Frame = +3
Query: 342 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 521
GH+ PV +FS P +L+S+ +DG L T + + GH VW +
Sbjct: 403 GHSGPVYGASFS---PDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYG 459
Query: 522 XXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 698
+W L A H V F +SNY+ TG D+ +R++D+
Sbjct: 460 YYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVL 519
Query: 699 KPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWD--HATMT-EVKSLNFNMSV 866
+ +GH I + + + + A D V LWD H M E+K +V
Sbjct: 520 NGNC-VRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK--GHTDTV 576
Query: 867 SSMEYIPEGEILVITYGRSIAFHSAISL-DPIKSFE 971
S+ + +GEIL S + + + L D +K+FE
Sbjct: 577 CSLRFSRDGEILA-----SGSMDNTVRLWDAVKAFE 607
>ref|XP_001926012.1| PREDICTED: WD repeat and SOCS box-containing protein 2 [Sus scrofa].
Length = 407
Score = 55.8 bits (133), Expect = 4e-08
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 9/161 (5%)
Frame = +3
Query: 561 VWDAVSGDELMTLA-HKHIVKTVDFTQDSNYLL-TGGQDKLLRIYDLNKPEAEPKEISGH 734
+W+ +G L+ L+ H+ +V+ + FT + +L + +DK LRI+DLNK + + +SGH
Sbjct: 140 IWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGH 199
Query: 735 SSGIKKALWC---SEDKQIL--SADDKTVRLWDHATMTEVKSL-NFNMSVSSMEYIPEGE 896
+ +C S D +L +A +K+V LW + T ++ L SV S ++ P+
Sbjct: 200 LQWV----YCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSA 255
Query: 897 ILV-ITYGRSIAFHSAISLDPIKSFEAPATHHSASLHPEKD 1016
+LV +Y ++ I DP + HH+ P D
Sbjct: 256 LLVTASYDTNV-----IMWDPYTGERLRSLHHTQLSPPMDD 291
>ref|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated
factor-associated factor 65 kDa subunit 5L [Sus scrofa].
Length = 589
Score = 53.1 bits (126), Expect = 2e-07
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 2/161 (1%)
Frame = +3
Query: 342 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 521
GH PV D+ I+PY + S D L D + + GH V +
Sbjct: 382 GHAYPVWDV---DISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNS 438
Query: 522 XXXXXXXXXXXXXVWDAVSGDEL-MTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 698
+W A G+ + + H+ V ++ F+ + YL + G+D+ L+++DL
Sbjct: 439 NYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLA 498
Query: 699 KPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWD 818
KE+ GH+ I + + I SA D +VR+WD
Sbjct: 499 SGTLF-KELRGHTDNITSLTFSPDSSLIASASMDNSVRVWD 538
>ref|XP_001927037.1| PREDICTED: WD repeat-containing protein 61 [Sus scrofa].
Length = 305
Score = 52.8 bits (125), Expect = 3e-07
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Frame = +3
Query: 561 VWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHS 737
++D +G L TL H ++++ F+ DS L+T D ++IYD+ +SGH+
Sbjct: 174 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT-LSGHA 232
Query: 738 SGIKKALWCSEDKQILSAD-DKTVRLWDHATMT 833
S + +C +D +S+ DK+V++WD T T
Sbjct: 233 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 265
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,417,469
Number of extensions: 767513
Number of successful extensions: 2168
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 2119
Number of HSP's successfully gapped: 22
Length of query: 353
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,854,232
Effective search space: 2240120696
Effective search space used: 2240120696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007810
(1059 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035629.2| serine-threonine kinase receptor-associated pro... 439 e-123
Alignment gi|NP_038653.1| platelet-activating factor acetylhydrolase IB s... 62 1e-09
Alignment gi|NP_001036023.1| apoptotic protease-activating factor 1 [Mus ... 60 2e-09
Alignment gi|NP_033814.2| apoptotic protease-activating factor 1 [Mus mus... 60 2e-09
Alignment gi|NP_083436.2| sperm-associated antigen 16 protein isoform 1 [... 60 3e-09
Alignment gi|NP_080004.1| sperm-associated antigen 16 protein isoform 2 [... 60 3e-09
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 58 1e-08
Alignment gi|NP_796316.2| transcription initiation factor TFIID subunit 5... 57 2e-08
Alignment gi|NP_067514.2| WD repeat and SOCS box-containing protein 2 [Mu... 57 2e-08
Alignment gi|NP_780761.1| WD repeat-containing protein 3 [Mus musculus]. 54 2e-07
>ref|NP_035629.2| serine-threonine kinase receptor-associated protein [Mus musculus].
Length = 350
Score = 439 bits (1129), Expect = e-123
Identities = 215/239 (89%), Positives = 221/239 (92%)
Frame = +3
Query: 309 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 488
MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
Sbjct: 1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 60
Query: 489 AVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 668
AVWGATLN VWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
Sbjct: 61 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 120
Query: 669 DKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 848
DKLLRIYDLNKPEAEPKEISGH+SGIKKALWCS+DKQILSADDKTVRLWDHATMTEVKSL
Sbjct: 121 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSDDKQILSADDKTVRLWDHATMTEVKSL 180
Query: 849 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATHHSASLHPEKDFFV 1025
NFNMSVSSMEYIPEGEILVITYGRSIAFHSA+SL+PIKSFEAPAT +SASLHPEK+F V
Sbjct: 181 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPEKEFLV 239
>ref|NP_038653.1| platelet-activating factor acetylhydrolase IB subunit alpha [Mus
musculus].
Length = 410
Score = 61.6 bits (148), Expect = 1e-09
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T GH V +A I P G ++SA +D + + TG + TF GH+ V N
Sbjct: 187 TMHGHDHNVSSVA---IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNY------------- 650
VW + + L H+H+V+ + + +S+Y
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 303
Query: 651 -------LLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTV 806
LL+G +DK ++++D++ + GH + ++ L+ S K ILS ADDKT+
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 807 RLWDHATMTEVKSLN 851
R+WD+ +K+LN
Sbjct: 363 RVWDYKNKRCMKTLN 377
Score = 49.3 bits (116), Expect = 5e-06
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Frame = +3
Query: 339 SGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXX 518
SGH PV + F P ++SA +D + +TGD+ T GH +V + +
Sbjct: 105 SGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 519 XXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDL 695
+WD + + T+ H H V +V + +++++ +DK ++++++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV 221
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHAT 827
K +GH ++ + I S ++D+TVR+W AT
Sbjct: 222 QTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
>ref|NP_001036023.1| apoptotic protease-activating factor 1 [Mus musculus].
Length = 1249
Score = 60.5 bits (145), Expect = 2e-09
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 6/191 (3%)
Frame = +3
Query: 351 RPVVDLAFSGITPYGYFLISACKDGKPM-LRQGDTGDWIGTFLGHKGAVWGATLNXXXXX 527
RP D + I++C K + + + +TG+ + H+ V +
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 528 XXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDLN 698
+WD+ +G + T H V FT SN+LL TG D L+++DLN
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 699 KPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSM 875
+ E + GH++ + + +D+ + S D T+RLWD + E KS+N S
Sbjct: 732 QKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790
Query: 876 EYIPEG-EILV 905
E PE E++V
Sbjct: 791 EDPPEDVEVIV 801
>ref|NP_033814.2| apoptotic protease-activating factor 1 [Mus musculus].
Length = 1249
Score = 60.5 bits (145), Expect = 2e-09
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 6/191 (3%)
Frame = +3
Query: 351 RPVVDLAFSGITPYGYFLISACKDGKPM-LRQGDTGDWIGTFLGHKGAVWGATLNXXXXX 527
RP D + I++C K + + + +TG+ + H+ V +
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 528 XXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDLN 698
+WD+ +G + T H V FT SN+LL TG D L+++DLN
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 699 KPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSSM 875
+ E + GH++ + + +D+ + S D T+RLWD + E KS+N S
Sbjct: 732 QKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790
Query: 876 EYIPEG-EILV 905
E PE E++V
Sbjct: 791 EDPPEDVEVIV 801
>ref|NP_083436.2| sperm-associated antigen 16 protein isoform 1 [Mus musculus].
Length = 639
Score = 60.1 bits (144), Expect = 3e-09
Identities = 56/203 (27%), Positives = 82/203 (40%), Gaps = 4/203 (1%)
Frame = +3
Query: 267 DPQLSCGIARLAAAMAMRQ--TPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLR 440
D +SC RL + + Q LT SGHT + F P G L ++ D L
Sbjct: 373 DYLISCSEDRLWKMVGLPQGNVLLTGSGHTDWLSGCCFH---PSGSKLATSSGDSTIKLW 429
Query: 441 QGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIV 617
+ G+ T GH AVW T + +WD S TL H V
Sbjct: 430 DLNKGECTLTLEGHNHAVWSCTWHSCGDFVASASLDMTSKIWDVNSERCRYTLYGHTDSV 489
Query: 618 KTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADD 797
+++F SN LLT DK L ++D + E + + GH + A + I S D
Sbjct: 490 NSIEFFPFSNILLTASADKTLSVWDARTGKCE-QSLYGHMHSVNDATFTPRGHIIASCDA 548
Query: 798 KTV-RLWDHATMTEVKSLNFNMS 863
+ V +LWD + + S++ S
Sbjct: 549 RGVTKLWDFRKLIPIVSIDVGPS 571
>ref|NP_080004.1| sperm-associated antigen 16 protein isoform 2 [Mus musculus].
Length = 310
Score = 60.1 bits (144), Expect = 3e-09
Identities = 56/203 (27%), Positives = 82/203 (40%), Gaps = 4/203 (1%)
Frame = +3
Query: 267 DPQLSCGIARLAAAMAMRQ--TPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLR 440
D +SC RL + + Q LT SGHT + F P G L ++ D L
Sbjct: 44 DYLISCSEDRLWKMVGLPQGNVLLTGSGHTDWLSGCCFH---PSGSKLATSSGDSTIKLW 100
Query: 441 QGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIV 617
+ G+ T GH AVW T + +WD S TL H V
Sbjct: 101 DLNKGECTLTLEGHNHAVWSCTWHSCGDFVASASLDMTSKIWDVNSERCRYTLYGHTDSV 160
Query: 618 KTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADD 797
+++F SN LLT DK L ++D + E + + GH + A + I S D
Sbjct: 161 NSIEFFPFSNILLTASADKTLSVWDARTGKCE-QSLYGHMHSVNDATFTPRGHIIASCDA 219
Query: 798 KTV-RLWDHATMTEVKSLNFNMS 863
+ V +LWD + + S++ S
Sbjct: 220 RGVTKLWDFRKLIPIVSIDVGPS 242
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 57.8 bits (138), Expect = 1e-08
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 12/199 (6%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T SGH + D+A+S + L+SA D + +G + T GH V+ N
Sbjct: 82 TISGHKLGISDVAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIY 689
+WD +G L TL AH V V F +D + +++ D L RI+
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 690 DLNKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHA------TMTEVKSL 848
D + I + + + K IL+A D T++LWD++ T T K+
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 849 NF----NMSVSSMEYIPEG 893
+ N SV+ ++I G
Sbjct: 259 KYCIFANFSVTGGKWIVSG 277
Score = 54.7 bits (130), Expect = 1e-07
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Frame = +3
Query: 594 TLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSE 770
TLA H V +V F+ + +L + DKL++I+ + E K ISGH GI W S+
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 98
Query: 771 DKQILSA-DDKTVRLWDHATMTEVKSLNFNMS-VSSMEYIPEGEILV 905
++SA DDKT+++WD ++ +K+L + + V + P+ ++V
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145
>ref|NP_796316.2| transcription initiation factor TFIID subunit 5 [Mus musculus].
Length = 801
Score = 57.0 bits (136), Expect = 2e-08
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 5/196 (2%)
Frame = +3
Query: 342 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 521
GH PV D FS PYGY+ +S D L D + F GH V +
Sbjct: 584 GHNYPVWDTQFS---PYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNS 640
Query: 522 XXXXXXXXXXXXXVWDAVSGDEL-MTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 698
+WD ++G+ + + HK + ++ F+ + +L TG D + ++D+
Sbjct: 641 NYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIG 700
Query: 699 KPEAEPKEISGHSSGIKKALWCSEDKQILSAD--DKTVRLWDHATMTEVKSLNFNMSVSS 872
E+ GH+ + +L S D +IL++ D TVRLWD E + + +
Sbjct: 701 H-GLMVGELKGHTDTV-CSLRFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATG 758
Query: 873 MEYIPEG--EILVITY 914
+PE E+L+ TY
Sbjct: 759 HINLPENSQELLLGTY 774
Score = 50.8 bits (120), Expect = 2e-06
Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 6/216 (2%)
Frame = +3
Query: 342 GHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXX 521
GH+ PV +FS P +L+S+ +DG L T + + GH VW +
Sbjct: 542 GHSGPVYGASFS---PDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYG 598
Query: 522 XXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLN 698
+W L A H V F +SNY+ TG D+ +R++D+
Sbjct: 599 YYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVL 658
Query: 699 KPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWD--HATMT-EVKSLNFNMSV 866
+ +GH I + + + + A D V LWD H M E+K +V
Sbjct: 659 NGNC-VRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK--GHTDTV 715
Query: 867 SSMEYIPEGEILVITYGRSIAFHSAISL-DPIKSFE 971
S+ + +GEIL S + + + L D +K+FE
Sbjct: 716 CSLRFSRDGEILA-----SGSMDNTVRLWDAVKAFE 746
>ref|NP_067514.2| WD repeat and SOCS box-containing protein 2 [Mus musculus].
Length = 404
Score = 57.0 bits (136), Expect = 2e-08
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 9/161 (5%)
Frame = +3
Query: 561 VWDAVSGDELMTLA-HKHIVKTVDFTQDSNYLL-TGGQDKLLRIYDLNKPEAEPKEISGH 734
+W+ +G L+ L+ H+ +V+ + FT + +L + +DK LRI+DLNK + + +SGH
Sbjct: 137 IWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGH 196
Query: 735 SSGIKKALWC---SEDKQIL--SADDKTVRLWDHATMTEVKSL-NFNMSVSSMEYIPEGE 896
+ +C S D +L +A +K+V LW + T ++ L SV S ++ P+
Sbjct: 197 LQWV----YCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSA 252
Query: 897 ILV-ITYGRSIAFHSAISLDPIKSFEAPATHHSASLHPEKD 1016
+LV +Y S+ I DP + HH+ L P D
Sbjct: 253 LLVTASYDTSV-----IMWDPYTGERLRSLHHT-QLEPTMD 287
>ref|NP_780761.1| WD repeat-containing protein 3 [Mus musculus].
Length = 942
Score = 54.3 bits (129), Expect = 2e-07
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 2/154 (1%)
Frame = +3
Query: 384 TPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXV 563
+P G L +DG + +G+ TF GHK AV + +
Sbjct: 74 SPDGLHLAVGYEDGAIRIFSLLSGEGNITFNGHKAAVTSLKYDQLGGRLASGSKDTDVII 133
Query: 564 WDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSS 740
WD ++ L L HK V F ++ N L+T G+D +++ +DL+ K + GH +
Sbjct: 134 WDVINESGLYRLKGHKDAVTQALFLRERNLLVTSGKDTMVKWWDLDNQHCF-KTMVGHRT 192
Query: 741 GIKKALWCSEDKQILS-ADDKTVRLWDHATMTEV 839
+ + SE+K++++ A D +R WD + E+
Sbjct: 193 EVWGLVLVSEEKRLITGAADSELRAWDIDYLQEI 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,126,779
Number of extensions: 919420
Number of successful extensions: 2887
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 2823
Number of HSP's successfully gapped: 22
Length of query: 353
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 251
Effective length of database: 12,553,887
Effective search space: 3151025637
Effective search space used: 3151025637
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007810
(1059 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009109.3| serine-threonine kinase receptor-associated pro... 442 e-124
Alignment gi|NP_078808.3| sperm-associated antigen 16 protein isoform 1 [... 65 8e-11
Alignment gi|NP_000421.1| platelet-activating factor acetylhydrolase IB s... 62 1e-09
Alignment gi|NP_006775.1| WD repeat-containing protein 3 [Homo sapiens]. 58 1e-08
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 58 2e-08
Alignment gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens]. 58 2e-08
Alignment gi|NP_863658.1| apoptotic protease-activating factor 1 isoform ... 57 2e-08
Alignment gi|NP_863651.1| apoptotic protease-activating factor 1 isoform ... 57 2e-08
Alignment gi|NP_001151.1| apoptotic protease-activating factor 1 isoform ... 57 2e-08
Alignment gi|NP_037361.1| apoptotic protease-activating factor 1 isoform ... 57 2e-08
>ref|NP_009109.3| serine-threonine kinase receptor-associated protein [Homo sapiens].
Length = 350
Score = 442 bits (1136), Expect = e-124
Identities = 217/239 (90%), Positives = 221/239 (92%)
Frame = +3
Query: 309 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 488
MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
Sbjct: 1 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG 60
Query: 489 AVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 668
AVWGATLN VWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
Sbjct: 61 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ 120
Query: 669 DKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 848
DKLLRIYDLNKPEAEPKEISGH+SGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
Sbjct: 121 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL 180
Query: 849 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATHHSASLHPEKDFFV 1025
NFNMSVSSMEYIPEGEILVITYGRSIAFHSA+SLDPIKSFEAPAT +SASLHPEK+F V
Sbjct: 181 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLV 239
>ref|NP_078808.3| sperm-associated antigen 16 protein isoform 1 [Homo sapiens].
Length = 631
Score = 65.5 bits (158), Expect = 8e-11
Identities = 64/225 (28%), Positives = 91/225 (40%), Gaps = 5/225 (2%)
Frame = +3
Query: 267 DPQLSCGIARLAAAMAMRQTP--LTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLR 440
D +SCG RL + + + LT GHT + D F P G L ++ D L
Sbjct: 365 DILVSCGEDRLWKVLGLPKCNVLLTGFGHTDWLSDCCFH---PSGDKLATSSGDTTVKLW 421
Query: 441 QGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIV 617
GD I TF GH AVW T + +WD S TL H V
Sbjct: 422 DLCKGDCILTFEGHSRAVWSCTWHSCGNFVASSSLDKTSKIWDVNSERCRCTLYGHTDSV 481
Query: 618 KTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILSADD 797
+++F SN LLT DK L I+D E + + GH I A++ I S D
Sbjct: 482 NSIEFFPFSNTLLTSSADKTLSIWDARTGICE-QSLYGHMHSINDAIFDPRGHMIASCDA 540
Query: 798 KTV-RLWDHATMTEVKSLNFNMSV-SSMEYIPEGEILVITYGRSI 926
V +LWD + + S++ S + + + G +L G +
Sbjct: 541 CGVTKLWDFRKLLPIVSIDIGPSPGNEVNFDSSGRVLAQASGNGV 585
>ref|NP_000421.1| platelet-activating factor acetylhydrolase IB subunit alpha [Homo
sapiens].
Length = 410
Score = 61.6 bits (148), Expect = 1e-09
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T GH V +A I P G ++SA +D + + TG + TF GH+ V N
Sbjct: 187 TMHGHDHNVSSVA---IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTLA-HKHIVKTVDFTQDSNY------------- 650
VW + + L H+H+V+ + + +S+Y
Sbjct: 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKK 303
Query: 651 -------LLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTV 806
LL+G +DK ++++D++ + GH + ++ L+ S K ILS ADDKT+
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 807 RLWDHATMTEVKSLN 851
R+WD+ +K+LN
Sbjct: 363 RVWDYKNKRCMKTLN 377
Score = 49.3 bits (116), Expect = 6e-06
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Frame = +3
Query: 339 SGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXX 518
SGH PV + F P ++SA +D + +TGD+ T GH +V + +
Sbjct: 105 SGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 519 XXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDL 695
+WD + + T+ H H V +V + +++++ +DK ++++++
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV 221
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILS-ADDKTVRLWDHAT 827
K +GH ++ + I S ++D+TVR+W AT
Sbjct: 222 QTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
>ref|NP_006775.1| WD repeat-containing protein 3 [Homo sapiens].
Length = 943
Score = 58.2 bits (139), Expect = 1e-08
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 2/155 (1%)
Frame = +3
Query: 384 TPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXXXXXXXXXXXXXXV 563
+P G L +DG + +G+ TF GHK A+ + V
Sbjct: 74 SPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITTLKYDQLGGRLASGSKDTDIIV 133
Query: 564 WDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSS 740
WD ++ L L HK + F ++ N L+T G+D +++ +DL+ K + GH +
Sbjct: 134 WDVINESGLYRLKGHKDAITQALFLREKNLLVTSGKDTMVKWWDLDTQHCF-KTMVGHRT 192
Query: 741 GIKKALWCSEDKQILS-ADDKTVRLWDHATMTEVK 842
+ + SE+K++++ A D +R+WD A + E++
Sbjct: 193 EVWGLVLLSEEKRLITGASDSELRVWDIAYLQEIE 227
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 57.8 bits (138), Expect = 2e-08
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 12/199 (6%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T SGH + D+A+S + L+SA D + +G + T GH V+ N
Sbjct: 82 TISGHKLGISDVAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIY 689
+WD +G L TL AH V V F +D + +++ D L RI+
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 690 DLNKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHA------TMTEVKSL 848
D + I + + + K IL+A D T++LWD++ T T K+
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 849 NF----NMSVSSMEYIPEG 893
+ N SV+ ++I G
Sbjct: 259 KYCIFANFSVTGGKWIVSG 277
Score = 54.7 bits (130), Expect = 1e-07
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Frame = +3
Query: 594 TLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSE 770
TLA H V +V F+ + +L + DKL++I+ + E K ISGH GI W S+
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 98
Query: 771 DKQILSA-DDKTVRLWDHATMTEVKSLNFNMS-VSSMEYIPEGEILV 905
++SA DDKT+++WD ++ +K+L + + V + P+ ++V
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145
>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 57.8 bits (138), Expect = 2e-08
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 12/199 (6%)
Frame = +3
Query: 333 TCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLN 512
T SGH + D+A+S + L+SA D + +G + T GH V+ N
Sbjct: 82 TISGHKLGISDVAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 513 XXXXXXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLLTGGQDKLLRIY 689
+WD +G L TL AH V V F +D + +++ D L RI+
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 690 DLNKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHA------TMTEVKSL 848
D + I + + + K IL+A D T++LWD++ T T K+
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 849 NF----NMSVSSMEYIPEG 893
+ N SV+ ++I G
Sbjct: 259 KYCIFANFSVTGGKWIVSG 277
Score = 54.7 bits (130), Expect = 1e-07
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Frame = +3
Query: 594 TLA-HKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHSSGIKKALWCSE 770
TLA H V +V F+ + +L + DKL++I+ + E K ISGH GI W S+
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 98
Query: 771 DKQILSA-DDKTVRLWDHATMTEVKSLNFNMS-VSSMEYIPEGEILV 905
++SA DDKT+++WD ++ +K+L + + V + P+ ++V
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 145
>ref|NP_863658.1| apoptotic protease-activating factor 1 isoform d [Homo sapiens].
Length = 1205
Score = 57.4 bits (137), Expect = 2e-08
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 4/182 (2%)
Frame = +3
Query: 345 HTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXX 524
HT V FS G + S D + + +TG+ + H+ V +
Sbjct: 614 HTDAVYHACFS---EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 670
Query: 525 XXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDL 695
+W++++G+ + T H V FT S++LL TG D L+++DL
Sbjct: 671 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 730
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSS 872
N+ E + GH++ + + +DK + S D T++LWD + E KS+N +
Sbjct: 731 NQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 789
Query: 873 ME 878
+E
Sbjct: 790 LE 791
>ref|NP_863651.1| apoptotic protease-activating factor 1 isoform c [Homo sapiens].
Length = 1248
Score = 57.4 bits (137), Expect = 2e-08
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 4/182 (2%)
Frame = +3
Query: 345 HTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXX 524
HT V FS G + S D + + +TG+ + H+ V +
Sbjct: 614 HTDAVYHACFS---EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 670
Query: 525 XXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDL 695
+W++++G+ + T H V FT S++LL TG D L+++DL
Sbjct: 671 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 730
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSS 872
N+ E + GH++ + + +DK + S D T++LWD + E KS+N +
Sbjct: 731 NQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 789
Query: 873 ME 878
+E
Sbjct: 790 LE 791
>ref|NP_001151.1| apoptotic protease-activating factor 1 isoform b [Homo sapiens].
Length = 1194
Score = 57.4 bits (137), Expect = 2e-08
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 4/182 (2%)
Frame = +3
Query: 345 HTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXX 524
HT V FS G + S D + + +TG+ + H+ V +
Sbjct: 603 HTDAVYHACFS---EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 659
Query: 525 XXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDL 695
+W++++G+ + T H V FT S++LL TG D L+++DL
Sbjct: 660 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 719
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSS 872
N+ E + GH++ + + +DK + S D T++LWD + E KS+N +
Sbjct: 720 NQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 778
Query: 873 ME 878
+E
Sbjct: 779 LE 780
>ref|NP_037361.1| apoptotic protease-activating factor 1 isoform a [Homo sapiens].
Length = 1237
Score = 57.4 bits (137), Expect = 2e-08
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 4/182 (2%)
Frame = +3
Query: 345 HTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNXXXX 524
HT V FS G + S D + + +TG+ + H+ V +
Sbjct: 603 HTDAVYHACFS---EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 659
Query: 525 XXXXXXXXXXXXVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYLL--TGGQDKLLRIYDL 695
+W++++G+ + T H V FT S++LL TG D L+++DL
Sbjct: 660 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 719
Query: 696 NKPEAEPKEISGHSSGIKKALWCSEDKQILSAD-DKTVRLWDHATMTEVKSLNFNMSVSS 872
N+ E + GH++ + + +DK + S D T++LWD + E KS+N +
Sbjct: 720 NQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 778
Query: 873 ME 878
+E
Sbjct: 779 LE 780
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,268,396
Number of extensions: 1079959
Number of successful extensions: 3504
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 3428
Number of HSP's successfully gapped: 22
Length of query: 353
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 249
Effective length of database: 14,868,908
Effective search space: 3702358092
Effective search space used: 3702358092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007810
(1059 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 597 e-168
>Sscrofa_Chr05
|| Length = 111506441
Score = 597 bits (301), Expect = e-168
Identities = 307/309 (99%)
Strand = Plus / Minus
Query: 112 cggcggtcgaccgccagtcgcacactccctgacccacccctaaccctttcctggtttcgg 171
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 60026129 cggcggtcgaccgccagtcgcacactccctgacccatccctaaccctttcctggattcgg 60026070
Query: 172 ggccaccagattggcctttttctgtttcccggcccagcgtcagggcgtaggccttgagtg 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60026069 ggccaccagattggcctttttctgtttcccggcccagcgtcagggcgtaggccttgagtg 60026010
Query: 232 agaggcgctgccgcggagaagagaaaagacgagacgaccctcagctctcctgcgggatcg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60026009 agaggcgctgccgcggagaagagaaaagacgagacgaccctcagctctcctgcgggatcg 60025950
Query: 292 ctcggctcgccgccgccatggcaatgaggcaaacgcctctcacttgctccggccacacgc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60025949 ctcggctcgccgccgccatggcaatgaggcaaacgcctctcacttgctccggccacacgc 60025890
Query: 352 ggcctgtggtggatttggccttcagtggcatcacgccttatggctatttcttaatcagtg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60025889 ggcctgtggtggatttggccttcagtggcatcacgccttatggctatttcttaatcagtg 60025830
Query: 412 cttgcaaag 420
|||||||||
Sbjct: 60025829 cttgcaaag 60025821
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 808 gcctttgggaccatgctactatgacagaagtgaaatctctaaattttaatatgtctgtta 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60013472 gcctttgggaccatgctactatgacagaagtgaaatctctaaattttaatatgtctgtta 60013413
Query: 868 gcagtatggaatatattcctgagggagagatcttggtaataacttatggacgatctattg 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60013412 gcagtatggaatatattcctgagggagagatcttggtaataacttatggacgatctattg 60013353
Query: 928 cttttcatagtgcaataag 946
|||||||||||||||||||
Sbjct: 60013352 cttttcatagtgcaataag 60013334
Score = 274 bits (138), Expect = 9e-71
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 419 agatggcaaacctatgctacgccagggagatacaggagactggattggaacgtttttggg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60025145 agatggcaaacctatgctacgccagggagatacaggagactggattggaacgtttttggg 60025086
Query: 479 tcataagggtgctgtttggggtgcaacattgaataaggatgccaccaaagcagctacagc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60025085 tcataagggtgctgtttggggtgcaacattgaataaggatgccaccaaagcagctacagc 60025026
Query: 539 agctgcagatttcacagc 556
||||||||||||||||||
Sbjct: 60025025 agctgcagatttcacagc 60025008
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 710 agaacctaaggaaatcagtggtcacagttctggtattaaaaaggctctgtggtgcagtga 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60014677 agaacctaaggaaatcagtggtcacagttctggtattaaaaaggctctgtggtgcagtga 60014618
Query: 770 ggataaacagattctttcagctgatgataaaactgttcg 808
|||||||||||||||||||||||||||||||||||||||
Sbjct: 60014617 ggataaacagattctttcagctgatgataaaactgttcg 60014579
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 557 caaagtatgggatgctgtctcaggagatgaattgatgaccctggctcataaacacattgt 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60018085 caaagtatgggatgctgtctcaggagatgaattgatgaccctggctcataaacacattgt 60018026
Query: 617 caagactgtggattttacacagg 639
|||||||||||||||||||||||
Sbjct: 60018025 caagactgtggattttacacagg 60018003
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 636 caggatagtaattacttgttaactggaggacaggataaactgttacgcatatatgacttg 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60017214 caggatagtaattacttgttaactggaggacaggataaactgttacgcatatatgacttg 60017155
Query: 696 aacaaacctgaagcag 711
||||||||||||||||
Sbjct: 60017154 aacaaacctgaagcag 60017139
Score = 131 bits (66), Expect = 9e-28
Identities = 108/118 (91%), Gaps = 3/118 (2%)
Strand = Plus / Minus
Query: 945 agtttggacccaattaaatcctttgaagctcctgcaacccaccattctgcatctcttcat 1004
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 60010311 agtttggacccaattaaatcctttgaagctcctgcaaccatcaattctgcatctcttcat 60010252
Query: 1005 cctgagaaag-atttctttgtgccagtggtgaaga-tttaaactttat-agtatgatt 1059
|||||||||| ||||||| ||| |||||||||| |||||||||||| |||||||||
Sbjct: 60010251 cctgagaaagaatttcttgttgcaggtggtgaagattttaaactttataagtatgatt 60010194
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 1 agtgtcgtcacttcctgcgagtaccggtgtggacggtggggatcgtggctgccggttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60026240 agtgtcgtcacttcctgcgagtaccggtgtggacggtggggatcgtggctgccggttttc 60026181
Query: 61 ctgt 64
||||
Sbjct: 60026180 ctgt 60026177
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,666,269
Number of extensions: 162
Number of successful extensions: 162
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 8
Length of query: 1059
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1038
Effective length of database: 2,808,413,156
Effective search space: 2915132855928
Effective search space used: 2915132855928
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)