Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007815
(964 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092851.1| galactokinase [Bos taurus]. 491 e-139
Alignment gi|NP_001033259.1| N-acetylgalactosamine kinase [Bos taurus]. 74 2e-13
>ref|NP_001092851.1| galactokinase [Bos taurus].
Length = 392
Score = 491 bits (1265), Expect = e-139
Identities = 254/304 (83%), Positives = 259/304 (85%)
Frame = +2
Query: 53 MAASEQPXXXXXXXXXXXXXXXXXGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELV 232
MAASEQP GAEPELAVSAPGRVNLIGEHTDYN+GLVLPMALELV
Sbjct: 1 MAASEQPQAGELLAKARRAFLEEFGAEPELAVSAPGRVNLIGEHTDYNRGLVLPMALELV 60
Query: 233 TVLVGSPRTDGLVSLLTTSEDADEPRRLQFPLPTDKRPLEPGTPHWANYVKGVIQHYPAA 412
TVLVGSPR DGLVSLLTTSEDADEPRRLQFPLPT +RPLEPGTPHWANYVKGVIQHYPAA
Sbjct: 61 TVLVGSPRVDGLVSLLTTSEDADEPRRLQFPLPTSQRPLEPGTPHWANYVKGVIQHYPAA 120
Query: 413 PLPGFXXXXXXXXXXXXXXXXXXXXXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGV 592
PLPGF TYTFLQQLCPDSGTIAARAQVCQRAEHSFAGV
Sbjct: 121 PLPGFSAVVVSSVPLGDGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQRAEHSFAGV 180
Query: 593 PCGIMDQLIALLGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRR 772
PCGIMDQLIALLGQ+GHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRR
Sbjct: 181 PCGIMDQLIALLGQRGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRR 240
Query: 773 RQCEEVARALGKESLREVQREELEAGRELVSGEAFRRARHVVGEIQRTAQAAAALSRGDY 952
RQCEEVARALGKESLREVQ EELEAGR+L+S EAFRRARHVVGEIQRTAQAAAAL RGDY
Sbjct: 241 RQCEEVARALGKESLREVQLEELEAGRDLMSTEAFRRARHVVGEIQRTAQAAAALRRGDY 300
Query: 953 RAFG 964
RAFG
Sbjct: 301 RAFG 304
>ref|NP_001033259.1| N-acetylgalactosamine kinase [Bos taurus].
Length = 447
Score = 73.9 bits (180), Expect = 2e-13
Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 8/249 (3%)
Frame = +2
Query: 125 GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADE 304
G+ P+ V APGRVN+IGEH DY VLPMA+E ++ P ++ L T+
Sbjct: 20 GSVPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDMLIAVEPVKTHVLQLANTN----- 74
Query: 305 PRRLQFPLPTDKRPLEPGTPHWANY----VKGVIQHYPAAPLPGFXXXXXXXXXXXXXXX 472
P F + ++ P W NY KG+ +H+ + L G
Sbjct: 75 PLYPDFSTSANNIQIDKTKPLWHNYFLCGFKGIQEHFGLSDLTGMNCLVDGNIPPSSGLS 134
Query: 473 XXXXXXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALL 652
+ + + A++C ++E + G G MDQ I+ L ++G A L
Sbjct: 135 SSSALVCCAGLVTLTVLGMNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKL 193
Query: 653 IDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGKES---LRE 823
I+ L + V L + V+ + + +S + +R +C A+ L K +E
Sbjct: 194 IEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKHKSLPWKE 253
Query: 824 VQR-EELEA 847
V R EE++A
Sbjct: 254 VLRLEEVQA 262
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,601,799
Number of extensions: 1425110
Number of successful extensions: 7125
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7086
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 219
Effective length of database: 14,306,398
Effective search space: 3133101162
Effective search space used: 3133101162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007815
(964 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003104.1| galactokinase [Canis lupus familiaris]. 476 e-134
Alignment gi|XP_544673.2| PREDICTED: similar to N-acetylgalactosamine kin... 73 4e-13
Alignment gi|XP_862126.1| PREDICTED: similar to N-acetylgalactosamine kin... 61 2e-09
>ref|NP_001003104.1| galactokinase [Canis lupus familiaris].
Length = 392
Score = 476 bits (1224), Expect = e-134
Identities = 247/304 (81%), Positives = 254/304 (83%)
Frame = +2
Query: 53 MAASEQPXXXXXXXXXXXXXXXXXGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELV 232
MAAS P GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELV
Sbjct: 1 MAASSPPRAGELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELV 60
Query: 233 TVLVGSPRTDGLVSLLTTSEDADEPRRLQFPLPTDKRPLEPGTPHWANYVKGVIQHYPAA 412
TVLVGSPR DGLVSLLTTSEDADEPRRLQFPLPT +R LEPGTP WANYVKGVIQHYPAA
Sbjct: 61 TVLVGSPRADGLVSLLTTSEDADEPRRLQFPLPTAQRSLEPGTPRWANYVKGVIQHYPAA 120
Query: 413 PLPGFXXXXXXXXXXXXXXXXXXXXXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGV 592
PLPGF TYTFLQQLCPDSG++AARAQVCQ+AEHSFAGV
Sbjct: 121 PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGSVAARAQVCQQAEHSFAGV 180
Query: 593 PCGIMDQLIALLGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRR 772
PCGIMDQLIALLGQ+GHALLIDCRSLETSLVPLS+PKLAVLITNSNVRHSLGSSEYPLRR
Sbjct: 181 PCGIMDQLIALLGQEGHALLIDCRSLETSLVPLSEPKLAVLITNSNVRHSLGSSEYPLRR 240
Query: 773 RQCEEVARALGKESLREVQREELEAGRELVSGEAFRRARHVVGEIQRTAQAAAALSRGDY 952
RQCEEVARALGKESLREVQ EELEAGRELVS E FRRARHVVGEI+RTAQAAAAL RGDY
Sbjct: 241 RQCEEVARALGKESLREVQLEELEAGRELVSKEGFRRARHVVGEIRRTAQAAAALCRGDY 300
Query: 953 RAFG 964
RAFG
Sbjct: 301 RAFG 304
>ref|XP_544673.2| PREDICTED: similar to N-acetylgalactosamine kinase (GalNAc kinase)
(Galactokinase 2) isoform 1 [Canis familiaris].
Length = 458
Score = 73.2 bits (178), Expect = 4e-13
Identities = 59/232 (25%), Positives = 96/232 (41%), Gaps = 4/232 (1%)
Frame = +2
Query: 125 GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADE 304
G+ P+ V APGRVN+IGEH DY VLPMA+E ++ P + L T+
Sbjct: 31 GSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAIEQDMLIAVEPVKTQTLQLANTN----- 85
Query: 305 PRRLQFPLPTDKRPLEPGTPHWANY----VKGVIQHYPAAPLPGFXXXXXXXXXXXXXXX 472
P F + ++ P W NY KG+ +H+ + L G
Sbjct: 86 PLYTDFSTSANNIQIDKTKPLWHNYFLCGFKGIQEHFGLSSLTGMNCLVDGNIPPSSGLS 145
Query: 473 XXXXXXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALL 652
+ + + A++C ++E + G G MDQ I+ L ++G A L
Sbjct: 146 SSSALVCCAGLVTLTVLGMNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKL 204
Query: 653 IDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGK 808
I+ L + V L + V+ + + +S + +R +C A+ L K
Sbjct: 205 IEFSPLRATDVKLPSGAIFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAK 256
>ref|XP_862126.1| PREDICTED: similar to N-acetylgalactosamine kinase (GalNAc kinase)
(Galactokinase 2) isoform 3 [Canis familiaris].
Length = 374
Score = 60.8 bits (146), Expect = 2e-09
Identities = 69/271 (25%), Positives = 107/271 (39%), Gaps = 5/271 (1%)
Frame = +2
Query: 125 GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADE 304
G+ P+ V APGRVN+IGEH DY VLPMA+E ++ P + L T+
Sbjct: 31 GSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAIEQDMLIAVEPVKTQTLQLANTN----- 85
Query: 305 PRRLQFPLPTDKRPLEPGTPHWANY----VKGVIQHYPAAPLPGFXXXXXXXXXXXXXXX 472
P F + ++ P W NY KG+ +H+ + L G
Sbjct: 86 PLYTDFSTSANNIQIDKTKPLWHNYFLCGFKGIQEHFGLSSLTGMNCLVDG--------- 136
Query: 473 XXXXXXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALL 652
+ P SG ++ A VC AG+ + +LG LL
Sbjct: 137 --------------NIPPSSGLSSSSALVC------CAGL------VTLTVLGMNLSKLL 170
Query: 653 IDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGKESLREVQR 832
R L+ V + A L + + EEV R LG SL+E++
Sbjct: 171 AKYRGLQWDKVLRLEEVQAKLGVSLEEMLQITEDTLHPEPYSPEEVCRCLG-ISLQELRT 229
Query: 833 EELEAG-RELVSGEAFRRARHVVGEIQRTAQ 922
+ L +++++ + ++RA+HV E R Q
Sbjct: 230 QILSPNTQDVLTFKLYQRAKHVYSEAARVLQ 260
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,346,740
Number of extensions: 1461823
Number of successful extensions: 7383
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7342
Number of HSP's successfully gapped: 3
Length of query: 321
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 218
Effective length of database: 15,440,896
Effective search space: 3366115328
Effective search space used: 3366115328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007815
(964 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131241.1| PREDICTED: galactokinase-like [Sus scrofa]. 510 e-145
Alignment gi|XP_003121567.2| PREDICTED: n-acetylgalactosamine kinase isof... 72 5e-13
Alignment gi|XP_001925589.3| PREDICTED: n-acetylgalactosamine kinase isof... 72 5e-13
>ref|XP_003131241.1| PREDICTED: galactokinase-like [Sus scrofa].
Length = 392
Score = 510 bits (1313), Expect = e-145
Identities = 264/304 (86%), Positives = 264/304 (86%)
Frame = +2
Query: 53 MAASEQPXXXXXXXXXXXXXXXXXGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELV 232
MAASEQP GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELV
Sbjct: 1 MAASEQPRAEELLARARRAFLEEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELV 60
Query: 233 TVLVGSPRTDGLVSLLTTSEDADEPRRLQFPLPTDKRPLEPGTPHWANYVKGVIQHYPAA 412
TVLVGSPRTDGLVSLLTTSEDADEPRRLQFPLPTDKRPLEPGTPHWANYVKGVIQHYPAA
Sbjct: 61 TVLVGSPRTDGLVSLLTTSEDADEPRRLQFPLPTDKRPLEPGTPHWANYVKGVIQHYPAA 120
Query: 413 PLPGFXXXXXXXXXXXXXXXXXXXXXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGV 592
PLPGF TYTFLQQLCPDSGTIAARAQVCQRAEHSFAGV
Sbjct: 121 PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQRAEHSFAGV 180
Query: 593 PCGIMDQLIALLGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRR 772
PCGIMDQLIALLGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRR
Sbjct: 181 PCGIMDQLIALLGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRR 240
Query: 773 RQCEEVARALGKESLREVQREELEAGRELVSGEAFRRARHVVGEIQRTAQAAAALSRGDY 952
RQCEEVARALGKESLREVQREELEAGRELVSGEAFRRARHVVGEIQRTAQAAAALSRGDY
Sbjct: 241 RQCEEVARALGKESLREVQREELEAGRELVSGEAFRRARHVVGEIQRTAQAAAALSRGDY 300
Query: 953 RAFG 964
RAFG
Sbjct: 301 RAFG 304
>ref|XP_003121567.2| PREDICTED: n-acetylgalactosamine kinase isoform 2 [Sus scrofa].
Length = 374
Score = 72.0 bits (175), Expect = 5e-13
Identities = 60/232 (25%), Positives = 96/232 (41%), Gaps = 4/232 (1%)
Frame = +2
Query: 125 GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADE 304
G+ P+ V APGRVN+IGEH DY VLPMA+E ++ P + L T+
Sbjct: 15 GSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDMLIAVEPVKTHTLQLANTN----- 69
Query: 305 PRRLQFPLPTDKRPLEPGTPHWANY----VKGVIQHYPAAPLPGFXXXXXXXXXXXXXXX 472
P F D ++ P W NY KG+ +H+ + L G
Sbjct: 70 PLYPDFNTSADNIQIDKTKPLWHNYFLCGFKGIQEHFGLSNLIGMNCLVDGNIPPSSGLS 129
Query: 473 XXXXXXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALL 652
+ + + A++C ++E + G G MDQ I+ L ++G A L
Sbjct: 130 SSSALVCCAGLVTLTVLGMNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKL 188
Query: 653 IDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGK 808
I+ L + V L + V+ + + +S + +R +C A+ L K
Sbjct: 189 IEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAK 240
>ref|XP_001925589.3| PREDICTED: n-acetylgalactosamine kinase isoform 1 [Sus scrofa].
Length = 390
Score = 72.0 bits (175), Expect = 5e-13
Identities = 60/232 (25%), Positives = 96/232 (41%), Gaps = 4/232 (1%)
Frame = +2
Query: 125 GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADE 304
G+ P+ V APGRVN+IGEH DY VLPMA+E ++ P + L T+
Sbjct: 31 GSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDMLIAVEPVKTHTLQLANTN----- 85
Query: 305 PRRLQFPLPTDKRPLEPGTPHWANY----VKGVIQHYPAAPLPGFXXXXXXXXXXXXXXX 472
P F D ++ P W NY KG+ +H+ + L G
Sbjct: 86 PLYPDFNTSADNIQIDKTKPLWHNYFLCGFKGIQEHFGLSNLIGMNCLVDGNIPPSSGLS 145
Query: 473 XXXXXXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALL 652
+ + + A++C ++E + G G MDQ I+ L ++G A L
Sbjct: 146 SSSALVCCAGLVTLTVLGMNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKL 204
Query: 653 IDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGK 808
I+ L + V L + V+ + + +S + +R +C A+ L K
Sbjct: 205 IEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAK 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,620,101
Number of extensions: 925416
Number of successful extensions: 4709
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4677
Number of HSP's successfully gapped: 3
Length of query: 321
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 222
Effective length of database: 8,879,129
Effective search space: 1971166638
Effective search space used: 1971166638
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007815
(964 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058601.2| galactokinase [Mus musculus]. 454 e-128
Alignment gi|NP_780363.1| N-acetylgalactosamine kinase [Mus musculus]. 74 2e-13
>ref|NP_058601.2| galactokinase [Mus musculus].
Length = 392
Score = 454 bits (1168), Expect = e-128
Identities = 231/280 (82%), Positives = 246/280 (87%)
Frame = +2
Query: 125 GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADE 304
GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTV+VGSPRTDGLVSLLTTS+DADE
Sbjct: 25 GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVMVGSPRTDGLVSLLTTSKDADE 84
Query: 305 PRRLQFPLPTDKRPLEPGTPHWANYVKGVIQHYPAAPLPGFXXXXXXXXXXXXXXXXXXX 484
P+RLQFPLP+ + LEPG P WANYVKGVIQHYPA+PL GF
Sbjct: 85 PQRLQFPLPSAQWSLEPGIPQWANYVKGVIQHYPASPLVGFSAVVVSSVPLGGGLSSSAS 144
Query: 485 XXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALLIDCR 664
TYTF+QQLCPDSG IAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKG+ALLIDCR
Sbjct: 145 LEVATYTFIQQLCPDSGAIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGYALLIDCR 204
Query: 665 SLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGKESLREVQREELE 844
SLETSLVPLSDPKLAVLITNSNVRHSLGSSEYP+RRRQCEEVA+ALGKESLREV+ EELE
Sbjct: 205 SLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPVRRRQCEEVAQALGKESLREVRMEELE 264
Query: 845 AGRELVSGEAFRRARHVVGEIQRTAQAAAALSRGDYRAFG 964
AGREL+S E FRRARHVV EI+RTAQAAAA+SRGDY+AFG
Sbjct: 265 AGRELMSKEGFRRARHVVSEIRRTAQAAAAMSRGDYKAFG 304
>ref|NP_780363.1| N-acetylgalactosamine kinase [Mus musculus].
Length = 447
Score = 73.9 bits (180), Expect = 2e-13
Identities = 59/232 (25%), Positives = 96/232 (41%), Gaps = 4/232 (1%)
Frame = +2
Query: 125 GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADE 304
G+ P+ V APGRVN+IGEH DY V+PMA+E ++ P + L T +
Sbjct: 20 GSTPKFYVRAPGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTHTLQLANT-----D 74
Query: 305 PRRLQFPLPTDKRPLEPGTPHWANY----VKGVIQHYPAAPLPGFXXXXXXXXXXXXXXX 472
P F + ++ P W NY KG+ +H+ + LPG
Sbjct: 75 PLYPDFSTTANNICIDKTKPLWHNYFLCGFKGIQEHFGLSKLPGMNCLVDGNIPPSSGLS 134
Query: 473 XXXXXXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALL 652
+ + A++C ++E + G G MDQ I+ L ++G A L
Sbjct: 135 SSSALVCCAGLVTLTVLGLRLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKL 193
Query: 653 IDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGK 808
I+ L + V L + V+ + + +S + +R +C A+ L K
Sbjct: 194 IEFSPLRATNVKLPSGAVFVIANSCMEMNKAATSHFNVRVMECRLAAKVLAK 245
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,118,003
Number of extensions: 1143057
Number of successful extensions: 5190
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5149
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 220
Effective length of database: 12,583,923
Effective search space: 2768463060
Effective search space used: 2768463060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007815
(964 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000145.1| galactokinase [Homo sapiens]. 461 e-130
Alignment gi|NP_001001556.1| N-acetylgalactosamine kinase isoform 2 [Homo... 72 6e-13
Alignment gi|NP_002035.1| N-acetylgalactosamine kinase isoform 1 [Homo sa... 72 6e-13
>ref|NP_000145.1| galactokinase [Homo sapiens].
Length = 392
Score = 461 bits (1186), Expect = e-130
Identities = 239/304 (78%), Positives = 250/304 (82%)
Frame = +2
Query: 53 MAASEQPXXXXXXXXXXXXXXXXXGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELV 232
MAA QP GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALEL+
Sbjct: 1 MAALRQPQVAELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELM 60
Query: 233 TVLVGSPRTDGLVSLLTTSEDADEPRRLQFPLPTDKRPLEPGTPHWANYVKGVIQHYPAA 412
TVLVGSPR DGLVSLLTTSE ADEP+RLQFPLPT +R LEPGTP WANYVKGVIQ+YPAA
Sbjct: 61 TVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAA 120
Query: 413 PLPGFXXXXXXXXXXXXXXXXXXXXXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGV 592
PLPGF TYTFLQQLCPDSGTIAARAQVCQ+AEHSFAG+
Sbjct: 121 PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGM 180
Query: 593 PCGIMDQLIALLGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRR 772
PCGIMDQ I+L+GQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSL SSEYP+RR
Sbjct: 181 PCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLASSEYPVRR 240
Query: 773 RQCEEVARALGKESLREVQREELEAGRELVSGEAFRRARHVVGEIQRTAQAAAALSRGDY 952
RQCEEVARALGKESLREVQ EELEA R+LVS E FRRARHVVGEI+RTAQAAAAL RGDY
Sbjct: 241 RQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDY 300
Query: 953 RAFG 964
RAFG
Sbjct: 301 RAFG 304
>ref|NP_001001556.1| N-acetylgalactosamine kinase isoform 2 [Homo sapiens].
Length = 447
Score = 72.4 bits (176), Expect = 6e-13
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 4/232 (1%)
Frame = +2
Query: 125 GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADE 304
G+ P+ V APGRVN+IGEH DY VLPMA+E ++ P + L T+
Sbjct: 20 GSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTN----- 74
Query: 305 PRRLQFPLPTDKRPLEPGTPHWANY----VKGVIQHYPAAPLPGFXXXXXXXXXXXXXXX 472
P F + ++ P W NY +KG+ +H+ + L G
Sbjct: 75 PLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLS 134
Query: 473 XXXXXXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALL 652
+ + + A++C ++E + G G MDQ I+ L ++G A L
Sbjct: 135 SSSALVCCAGLVTLTVLGRNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKL 193
Query: 653 IDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGK 808
I+ L + V L + V+ + + +S + +R +C A+ L K
Sbjct: 194 IEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAK 245
>ref|NP_002035.1| N-acetylgalactosamine kinase isoform 1 [Homo sapiens].
Length = 458
Score = 72.4 bits (176), Expect = 6e-13
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 4/232 (1%)
Frame = +2
Query: 125 GAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADE 304
G+ P+ V APGRVN+IGEH DY VLPMA+E ++ P + L T+
Sbjct: 31 GSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTN----- 85
Query: 305 PRRLQFPLPTDKRPLEPGTPHWANY----VKGVIQHYPAAPLPGFXXXXXXXXXXXXXXX 472
P F + ++ P W NY +KG+ +H+ + L G
Sbjct: 86 PLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLS 145
Query: 473 XXXXXXXXTYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALL 652
+ + + A++C ++E + G G MDQ I+ L ++G A L
Sbjct: 146 SSSALVCCAGLVTLTVLGRNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKL 204
Query: 653 IDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGK 808
I+ L + V L + V+ + + +S + +R +C A+ L K
Sbjct: 205 IEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAK 256
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,239,580
Number of extensions: 1406130
Number of successful extensions: 6484
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6459
Number of HSP's successfully gapped: 3
Length of query: 321
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 218
Effective length of database: 14,901,872
Effective search space: 3248608096
Effective search space used: 3248608096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007815
(964 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 432 e-118
>Sscrofa_Chr12
|| Length = 63588571
Score = 432 bits (218), Expect = e-118
Identities = 218/218 (100%)
Strand = Plus / Plus
Query: 1 gagcatcccgcgccgacccgactgcgccggacagagctgcagggcgagagtcatggccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5588424 gagcatcccgcgccgacccgactgcgccggacagagctgcagggcgagagtcatggccgc 5588483
Query: 61 ttcggaacagccccgggccgaggagctgctggccagggcccggagagccttcctggagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5588484 ttcggaacagccccgggccgaggagctgctggccagggcccggagagccttcctggagga 5588543
Query: 121 gttcggggccgagcccgagctggccgtgtcggcgccgggccgcgtcaacctcattgggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5588544 gttcggggccgagcccgagctggccgtgtcggcgccgggccgcgtcaacctcattgggga 5588603
Query: 181 gcacacggactacaaccagggcctggtgctgcccatgg 218
||||||||||||||||||||||||||||||||||||||
Sbjct: 5588604 gcacacggactacaaccagggcctggtgctgcccatgg 5588641
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 217 ggctctggagcttgtgactgtgctcgtgggcagcccccggacggatgggcttgtctccct 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5589351 ggctctggagcttgtgactgtgctcgtgggcagcccccggacggatgggcttgtctccct 5589410
Query: 277 ccttaccacctctgaggatgccgatgagccccggcggctgcagtttcccctgcccacaga 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5589411 ccttaccacctctgaggatgccgatgagccccggcggctgcagtttcccctgcccacaga 5589470
Query: 337 caagcggccgctggagcctgggaccccgcactgggccaactatgtgaagggagtgatcca 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5589471 caagcggccgctggagcctgggaccccgcactgggccaactatgtgaagggagtgatcca 5589530
Query: 397 gcactatccag 407
|||||||||||
Sbjct: 5589531 gcactatccag 5589541
Score = 367 bits (185), Expect = 8e-99
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 661 caggtccctggagacaagcctcgtgccgctgtcggaccccaagctggcagtactcatcac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5590755 caggtccctggagacaagcctcgtgccgctgtcggaccccaagctggcagtactcatcac 5590814
Query: 721 caactccaatgtccgccattcactgggctccagcgagtaccccctgcggcggcggcagtg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5590815 caactccaatgtccgccattcactgggctccagcgagtaccccctgcggcggcggcagtg 5590874
Query: 781 tgaggaagtggcccgggcgctgggcaaggagagccttcgggaggtgcagcgggaggagct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5590875 tgaggaagtggcccgggcgctgggcaaggagagccttcgggaggtgcagcgggaggagct 5590934
Query: 841 agaag 845
|||||
Sbjct: 5590935 agaag 5590939
Score = 281 bits (142), Expect = 3e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 525 cagactcggggacaatagctgcccgggcccaggtgtgtcagcgggccgagcacagcttcg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5590493 cagactcggggacaatagctgcccgggcccaggtgtgtcagcgggccgagcacagcttcg 5590552
Query: 585 caggggtgccctgtggcatcatggaccagctcatcgcactgctggggcagaaaggccacg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5590553 caggggtgccctgtggcatcatggaccagctcatcgcactgctggggcagaaaggccacg 5590612
Query: 645 cgctgctcattgactgcaggtc 666
||||||||||||||||||||||
Sbjct: 5590613 cgctgctcattgactgcaggtc 5590634
Score = 244 bits (123), Expect = 7e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 405 cagctgcccccctccctggcttcagtgcagtggtggtcagctcagtgccactagggggtg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5590174 cagctgcccccctccctggcttcagtgcagtggtggtcagctcagtgccactagggggtg 5590233
Query: 465 ggctgtccagctcagcatccctggaagtggccacgtataccttcctgcagcagctctgcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5590234 ggctgtccagctcagcatccctggaagtggccacgtataccttcctgcagcagctctgcc 5590293
Query: 525 cag 527
|||
Sbjct: 5590294 cag 5590296
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 844 agctggcagggagctggtgagtggggaggccttccggcgggcgcgacacgtcgtgggtga 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5596917 agctggcagggagctggtgagtggggaggccttccggcgggcgcgacacgtcgtgggtga 5596976
Query: 904 gatccagcgcacagcccaggcggcggccgccctgagccgtggcgactacagagcctttgg 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5596977 gatccagcgcacagcccaggcggcggccgccctgagccgtggcgactacagagcctttgg 5597036
Query: 964 c 964
|
Sbjct: 5597037 c 5597037
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,456,268
Number of extensions: 139
Number of successful extensions: 139
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 6
Length of query: 964
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 943
Effective length of database: 2,808,413,156
Effective search space: 2648333606108
Effective search space used: 2648333606108
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)