Animal-Genome cDNA 20110601C-007819

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007819
         (1638 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001180163.1| heterogeneous nuclear ribonucleoprotein H [B...   757   0.0  
Alignment   gi|XP_002688530.1| PREDICTED: heterogeneous nuclear ribonucleop...   757   0.0  
Alignment   gi|NP_001069476.1| heterogeneous nuclear ribonucleoprotein H2 [...   734   0.0  
Alignment   gi|NP_001014860.1| heterogeneous nuclear ribonucleoprotein F [B...   578   e-165
Alignment   gi|NP_001193508.1| heterogeneous nuclear ribonucleoprotein H3 [...   354   1e-97
Alignment   gi|NP_001071439.1| G-rich sequence factor 1 [Bos taurus].            199   8e-51
Alignment   gi|XP_002692834.1| PREDICTED: mCG11326-like [Bos taurus].            184   3e-46
Alignment   gi|XP_001251872.3| PREDICTED: mCG11326-like [Bos taurus].            184   3e-46
Alignment   gi|NP_001179931.1| epithelial splicing regulatory protein 1 [Bo...   129   8e-30
Alignment   gi|XP_002692862.1| PREDICTED: epithelial splicing regulatory pr...   129   8e-30

>ref|NP_001180163.1| heterogeneous nuclear ribonucleoprotein H [Bos taurus].
          Length = 449

 Score =  757 bits (1954), Expect = 0.0
 Identities = 379/438 (86%), Positives = 379/438 (86%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AYEHRYVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSDFQSNI
Sbjct: 431  SGYDQVLQENSSDFQSNI 448



 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  + +++  FFS          +      +GR +GEA VE  + ++   
Sbjct: 10   GFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKL 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+  M HRYVE+F
Sbjct: 70   ALKKDRETMGHRYVEVF 86


>ref|XP_002688530.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H1 (H) [Bos
            taurus].
          Length = 449

 Score =  757 bits (1954), Expect = 0.0
 Identities = 379/438 (86%), Positives = 379/438 (86%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AYEHRYVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSDFQSNI
Sbjct: 431  SGYDQVLQENSSDFQSNI 448



 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  + +++  FFS          +      +GR +GEA VE  + ++   
Sbjct: 10   GFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKL 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+  M HRYVE+F
Sbjct: 70   ALKKDRETMGHRYVEVF 86


>ref|NP_001069476.1| heterogeneous nuclear ribonucleoprotein H2 [Bos taurus].
          Length = 449

 Score =  734 bits (1896), Expect = 0.0
 Identities = 364/438 (83%), Positives = 373/438 (85%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEV RFFSDCKIQNG  GIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSN+VEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNG+TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRD NYCFSGMSDHRYGDGGS+FQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDQNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNP+RVHIEIGPDGRVTGEADVEFATHEDAVAAM+KDKANMQHRYVELFLNSTAG SGG
Sbjct: 311  PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AY+H YVELFLN                   +SNQSSYGGPA                  
Sbjct: 371  AYDHSYVELFLNSTAGASGGAYGSQMMGGMGISNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSD+QSN+
Sbjct: 431  SGYDQVLQENSSDYQSNL 448



 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  + +++  FFS          +      +GR +GEA VE  + ++   
Sbjct: 10   GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKL 69

Query: 1103 AMSKDKANMQHRYVELFLNST 1165
            A+ KD+  M HRYVE+F +++
Sbjct: 70   ALKKDRETMGHRYVEVFKSNS 90


>ref|NP_001014860.1| heterogeneous nuclear ribonucleoprotein F [Bos taurus].
          Length = 414

 Score =  578 bits (1489), Expect = e-165
 Identities = 278/368 (75%), Positives = 309/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVK+RGLPWSCS ++VQ F SDC I +G  G+ FIYTREGR SGEAFVELESED+VKLA
Sbjct: 11   FVVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS DTANDGFVRLRGLPFGC+KEEI+QF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIIQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG ERMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGDG  T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQMMQ 378



 Score = 73.2 bits (178), Expect = 6e-13
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
 Frame = +2

Query: 401 DGFV-RLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQEIAE 571
           +GFV +LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S++  +
Sbjct: 9   EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVK 68

Query: 572 KALKKHKERIGHRYIEIFKSSRAEV 646
            ALKK +E +GHRYIE+FKS R E+
Sbjct: 69  LALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_001193508.1| heterogeneous nuclear ribonucleoprotein H3 [Bos taurus].
          Length = 317

 Score =  354 bits (908), Expect = 1e-97
 Identities = 186/281 (66%), Positives = 207/281 (73%), Gaps = 3/281 (1%)
 Frame = +2

Query: 350  MDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRST 529
            MDWV+KH GPN    A+DG VRLRGLPFGCSKEEIVQFF GLEIVPNGITL +D+QGRST
Sbjct: 1    MDWVMKHNGPND---ASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRST 57

Query: 530  GEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDR 709
            GEAFVQFAS+EIAE AL KHKERIGHRYIEIF+SSR+E++  YDPPR+L+  QRPGPYDR
Sbjct: 58   GEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLG-QRPGPYDR 116

Query: 710  PGAGR-GYNSIGRGAGFERMRRGA-XXXXXXXXXXXXXXXXXXXFGSDRFGRDLNYCFSG 883
            P  GR GY   GRG+ ++RMRRG                     +G+D F  D      G
Sbjct: 117  PIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFD-DRMRDGRG 175

Query: 884  MSDHRYGDGGSTFQS-TTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTG 1060
            M  H YG  G        GH VHMRGLP+RATENDI NFFSPLNP+RVHI+IG DGR TG
Sbjct: 176  MGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATG 235

Query: 1061 EADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            EADVEF THEDAVAAMS+DK NMQHRY+ELFLNST G   G
Sbjct: 236  EADVEFVTHEDAVAAMSRDKNNMQHRYIELFLNSTPGGGSG 276



 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 33/81 (40%), Positives = 53/81 (65%)
 Frame = +2

Query: 110 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 289
           V++RGLP+ CS +E+ +FF   +I     GI      +GR +GEAFV+  S++  + AL 
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75

Query: 290 KDRETMGHRYVEVFKSNNVEM 352
           K +E +GHRY+E+F+S+  E+
Sbjct: 76  KHKERIGHRYIEIFRSSRSEI 96


>ref|NP_001071439.1| G-rich sequence factor 1 [Bos taurus].
          Length = 481

 Score =  199 bits (505), Expect = 8e-51
 Identities = 96/185 (51%), Positives = 135/185 (72%), Gaps = 1/185 (0%)
 Frame = +2

Query: 104 FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
           ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+ESE +V+ A
Sbjct: 151 YLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 210

Query: 284 LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
           L+K R  MG RYVEV++ NN ++D ++K     S    NDG VRLRGLP+ C++++IV F
Sbjct: 211 LEKHRMYMGQRYVEVYEINNEDVDALMKSLHVKSAPMVNDGVVRLRGLPYSCNEKDIVDF 270

Query: 464 FSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA 640
           F+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYIEIF S R 
Sbjct: 271 FAGLNIV--DITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRN 328

Query: 641 EVRTH 655
           EVRTH
Sbjct: 329 EVRTH 333



 Score =  106 bits (265), Expect = 5e-23
 Identities = 48/75 (64%), Positives = 59/75 (78%)
 Frame = +2

Query: 938  HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 1117
            H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F THEDAVAAM KD
Sbjct: 402  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 461

Query: 1118 KANMQHRYVELFLNS 1162
            ++++ HRY+ELFLNS
Sbjct: 462  RSHVHHRYIELFLNS 476



 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 55/231 (23%)
 Frame = +2

Query: 107 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGR-PSGEAFVELESEDEVKLA 283
           VV++RGLP+SC+  ++  FF+   I +    I F+    GR  +GEA+V+ E  +    A
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMASQA 307

Query: 284 LKKDRETMGHRYVEVFKSNN---------------------------------------- 343
           L K RE +G+RY+E+F S                                          
Sbjct: 308 LLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDI 367

Query: 344 -----------VEMDWVLKHTGPNSPD---TANDGFVRLRGLPFGCSKEEIVQFFSGLEI 481
                      +E+   +    P + D   T++  FV +RGLPF  + ++I+ FF+ L+ 
Sbjct: 368 RPMTAFESEKEIELPKEMSEKIPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 426

Query: 482 VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 634
            P  IT+     G++TGEA V F + E A  A+ K +  + HRYIE+F +S
Sbjct: 427 -PVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 476



 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = +2

Query: 944  VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 1120
            V +RGLPY   E DI +FF+ LN V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 253  VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHR 312

Query: 1121 ANMQHRYVELF 1153
              + +RY+E+F
Sbjct: 313  EEIGNRYIEIF 323


>ref|XP_002692834.1| PREDICTED: mCG11326-like [Bos taurus].
          Length = 290

 Score =  184 bits (466), Expect = 3e-46
 Identities = 101/173 (58%), Positives = 111/173 (64%), Gaps = 3/173 (1%)
 Frame = +2

Query: 674  LMAMQRPGPYDRPGAGRG-YNSIGRGAGFERMRRGAXXXXXXXXXXXXXXXXXXX-FGSD 847
            LM   RPGPYDRP  GRG Y   GRG+ ++RMRRG                     +G+D
Sbjct: 49   LMGRLRPGPYDRPIGGRGGYYGAGRGSMYDRMRRGGDGYDGGCGGFDDYGGYNNYGYGND 108

Query: 848  RFGRDLNYCFSGMSDHRYGDGGSTFQSTTG-HCVHMRGLPYRATENDIYNFFSPLNPVRV 1024
             F  D      GM  H YG  G       G H VHMRGLP+RATENDI NFFSPLNP+RV
Sbjct: 109  GFD-DRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRV 167

Query: 1025 HIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            HI+IG DGR TGEADVEF THEDAVAAMSKDK NMQHRY+ELFLNST G + G
Sbjct: 168  HIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGASG 220



 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
 Frame = +2

Query: 407 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK 586
           FV +RGLPF  ++ +I  FFS L   P  + + +   GR+TGEA V+F + E A  A+ K
Sbjct: 140 FVHMRGLPFRATENDIANFFSPLN--PIRVHIDIGADGRATGEADVEFVTHEDAVAAMSK 197

Query: 587 HKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGR--GYNSIGR 745
            K  + HRYIE+F +S     +        M     G Y R G     GY S+GR
Sbjct: 198 DKNNMQHRYIELFLNSTPGGASG-------MGGSGMGGYGRDGMDNQGGYRSVGR 245


>ref|XP_001251872.3| PREDICTED: mCG11326-like [Bos taurus].
          Length = 290

 Score =  184 bits (466), Expect = 3e-46
 Identities = 101/173 (58%), Positives = 111/173 (64%), Gaps = 3/173 (1%)
 Frame = +2

Query: 674  LMAMQRPGPYDRPGAGRG-YNSIGRGAGFERMRRGAXXXXXXXXXXXXXXXXXXX-FGSD 847
            LM   RPGPYDRP  GRG Y   GRG+ ++RMRRG                     +G+D
Sbjct: 49   LMGRLRPGPYDRPIGGRGGYYGAGRGSMYDRMRRGGDGYDGGCGGFDDYGGYNNYGYGND 108

Query: 848  RFGRDLNYCFSGMSDHRYGDGGSTFQSTTG-HCVHMRGLPYRATENDIYNFFSPLNPVRV 1024
             F  D      GM  H YG  G       G H VHMRGLP+RATENDI NFFSPLNP+RV
Sbjct: 109  GFD-DRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRV 167

Query: 1025 HIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            HI+IG DGR TGEADVEF THEDAVAAMSKDK NMQHRY+ELFLNST G + G
Sbjct: 168  HIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGASG 220



 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
 Frame = +2

Query: 407 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK 586
           FV +RGLPF  ++ +I  FFS L   P  + + +   GR+TGEA V+F + E A  A+ K
Sbjct: 140 FVHMRGLPFRATENDIANFFSPLN--PIRVHIDIGADGRATGEADVEFVTHEDAVAAMSK 197

Query: 587 HKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGR--GYNSIGR 745
            K  + HRYIE+F +S     +        M     G Y R G     GY S+GR
Sbjct: 198 DKNNMQHRYIELFLNSTPGGASG-------MGGSGMGGYGRDGMDNQGGYRSVGR 245


>ref|NP_001179931.1| epithelial splicing regulatory protein 1 [Bos taurus].
          Length = 677

 Score =  129 bits (324), Expect = 8e-30
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 12/193 (6%)
 Frame = +2

Query: 107 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 286
           VV+ RGLPW  S  ++ RFF    I  G  G       +GR +GEA V   SE+   LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283

Query: 287 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 448
           ++ +  MG RY+EV+K+   +    LK  G  S + A      N   VR+RGLPF  + +
Sbjct: 284 QRHKHHMGSRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAD 340

Query: 449 EIVQFFSGLEIVPNG------ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 610
           E+V FF     +  G      +T P    GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397

Query: 611 YIEIFKSSRAEVR 649
           YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410



 Score =  117 bits (292), Expect = 4e-26
 Identities = 71/202 (35%), Positives = 114/202 (56%), Gaps = 22/202 (10%)
 Frame = +2

Query: 107 VVKVRGLPWSCSADEVQRFFSD-CKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
           +V++RGLP++ +ADEV  FF   C I  G +GI F+   +GRP+G+AFV    E+  + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 284 LKKDRETMGHRYVEVFKSNNVEMDWVLKH----------TGP--------NSPDTANDGF 409
           L+K ++ +G RY+E+F+S   E+  VL            T P          P T     
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIRDC 446

Query: 410 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 583
           +RLRGLP+  + E+I+ F      +I  +G+ + ++ QGR +G+AF+Q  S + A  A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 584 K-HKERIGHRYIEIFKSSRAEV 646
           K HK+ +  RY+E+F+ S  E+
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEM 528



 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
 Frame = +2

Query: 110 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 289
           +++RGLP++ + +++  F  +        G+  +   +GRPSG+AF++++S D   +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 290 K-DRETMGHRYVEVFKSNNVEMDWVL 364
           K  ++TM  RYVEVF+ +  EM++VL
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEMNFVL 532



 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
 Frame = +2

Query: 944  VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 1108
            V MRGLP+ AT +++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 328  VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387

Query: 1109 SKDKANMQHRYVELFLNSTA 1168
             K K  +  RY+ELF ++ A
Sbjct: 388  RKHKDLLGKRYIELFRSTAA 407


>ref|XP_002692862.1| PREDICTED: epithelial splicing regulatory protein 1 [Bos taurus].
          Length = 677

 Score =  129 bits (324), Expect = 8e-30
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 12/193 (6%)
 Frame = +2

Query: 107 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 286
           VV+ RGLPW  S  ++ RFF    I  G  G       +GR +GEA V   SE+   LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283

Query: 287 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 448
           ++ +  MG RY+EV+K+   +    LK  G  S + A      N   VR+RGLPF  + +
Sbjct: 284 QRHKHHMGSRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAD 340

Query: 449 EIVQFFSGLEIVPNG------ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 610
           E+V FF     +  G      +T P    GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397

Query: 611 YIEIFKSSRAEVR 649
           YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410



 Score =  117 bits (292), Expect = 4e-26
 Identities = 71/202 (35%), Positives = 114/202 (56%), Gaps = 22/202 (10%)
 Frame = +2

Query: 107 VVKVRGLPWSCSADEVQRFFSD-CKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
           +V++RGLP++ +ADEV  FF   C I  G +GI F+   +GRP+G+AFV    E+  + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 284 LKKDRETMGHRYVEVFKSNNVEMDWVLKH----------TGP--------NSPDTANDGF 409
           L+K ++ +G RY+E+F+S   E+  VL            T P          P T     
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIRDC 446

Query: 410 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 583
           +RLRGLP+  + E+I+ F      +I  +G+ + ++ QGR +G+AF+Q  S + A  A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 584 K-HKERIGHRYIEIFKSSRAEV 646
           K HK+ +  RY+E+F+ S  E+
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEM 528



 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
 Frame = +2

Query: 110 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 289
           +++RGLP++ + +++  F  +        G+  +   +GRPSG+AF++++S D   +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 290 K-DRETMGHRYVEVFKSNNVEMDWVL 364
           K  ++TM  RYVEVF+ +  EM++VL
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEMNFVL 532



 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
 Frame = +2

Query: 944  VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 1108
            V MRGLP+ AT +++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 328  VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387

Query: 1109 SKDKANMQHRYVELFLNSTA 1168
             K K  +  RY+ELF ++ A
Sbjct: 388  RKHKDLLGKRYIELFRSTAA 407


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,504,173
Number of extensions: 1187342
Number of successful extensions: 4461
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4247
Number of HSP's successfully gapped: 65
Length of query: 546
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 439
Effective length of database: 14,140,958
Effective search space: 6207880562
Effective search space used: 6207880562
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007819
         (1638 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_857122.1| PREDICTED: similar to Heterogeneous nuclear rib...   757   0.0  
Alignment   gi|XP_856627.1| PREDICTED: similar to Heterogeneous nuclear rib...   757   0.0  
Alignment   gi|XP_856465.1| PREDICTED: similar to Heterogeneous nuclear rib...   757   0.0  
Alignment   gi|XP_848777.1| PREDICTED: similar to Heterogeneous nuclear rib...   749   0.0  
Alignment   gi|XP_857080.1| PREDICTED: similar to Heterogeneous nuclear rib...   736   0.0  
Alignment   gi|XP_538110.1| PREDICTED: similar to Heterogeneous nuclear rib...   736   0.0  
Alignment   gi|XP_861938.1| PREDICTED: similar to Heterogeneous nuclear rib...   736   0.0  
Alignment   gi|XP_861916.1| PREDICTED: similar to Heterogeneous nuclear rib...   736   0.0  
Alignment   gi|XP_850619.1| PREDICTED: similar to Heterogeneous nuclear rib...   736   0.0  
Alignment   gi|XP_538576.2| PREDICTED: similar to Heterogeneous nuclear rib...   734   0.0  

>ref|XP_857122.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) isoform 19 [Canis familiaris].
          Length = 449

 Score =  757 bits (1954), Expect = 0.0
 Identities = 379/438 (86%), Positives = 379/438 (86%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AYEHRYVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSDFQSNI
Sbjct: 431  SGYDQVLQENSSDFQSNI 448


>ref|XP_856627.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) isoform 9 [Canis familiaris].
          Length = 449

 Score =  757 bits (1954), Expect = 0.0
 Identities = 379/438 (86%), Positives = 379/438 (86%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AYEHRYVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSDFQSNI
Sbjct: 431  SGYDQVLQENSSDFQSNI 448


>ref|XP_856465.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) isoform 5 [Canis familiaris].
          Length = 449

 Score =  757 bits (1954), Expect = 0.0
 Identities = 379/438 (86%), Positives = 379/438 (86%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AYEHRYVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSDFQSNI
Sbjct: 431  SGYDQVLQENSSDFQSNI 448


>ref|XP_848777.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) isoform 3 [Canis familiaris].
          Length = 439

 Score =  749 bits (1935), Expect = 0.0
 Identities = 377/438 (86%), Positives = 378/438 (86%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AYEHRYVELFLN                    +NQSSYGGPA                  
Sbjct: 371  AYEHRYVELFLN----------STAGASGGAYANQSSYGGPASQQLSGGYGGGYGGQSSM 420

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSDFQSNI
Sbjct: 421  SGYDQVLQENSSDFQSNI 438


>ref|XP_857080.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) isoform 18 [Canis familiaris].
          Length = 472

 Score =  736 bits (1901), Expect = 0.0
 Identities = 364/402 (90%), Positives = 364/402 (90%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPA 1309
            AYEHRYVELFLN                   LSNQSSYGGPA
Sbjct: 371  AYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPA 412


>ref|XP_538110.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) (FTP-3) isoform 1 [Canis familiaris].
          Length = 449

 Score =  736 bits (1900), Expect = 0.0
 Identities = 365/438 (83%), Positives = 373/438 (85%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEV RFFSDCKIQNG  GIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSN+VEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNG+TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRG GFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGTGFERMRRGAYGGGYGGYDDYGGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGS+FQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNP+RVHIEIGPDGRVTGEADVEFATHEDAVAAM+KDKANMQHRYVELFLNSTAG SGG
Sbjct: 311  PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AY+H YVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSD+QSN+
Sbjct: 431  SGYDQVLQENSSDYQSNL 448



 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  + +++  FFS          +      +GR +GEA VE  + ++   
Sbjct: 10   GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKL 69

Query: 1103 AMSKDKANMQHRYVELFLNST 1165
            A+ KD+  M HRYVE+F +++
Sbjct: 70   ALKKDRETMGHRYVEVFKSNS 90


>ref|XP_861938.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) (FTP-3) isoform 4 [Canis familiaris].
          Length = 449

 Score =  736 bits (1900), Expect = 0.0
 Identities = 365/438 (83%), Positives = 373/438 (85%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEV RFFSDCKIQNG  GIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSN+VEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNG+TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRG GFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGTGFERMRRGAYGGGYGGYDDYGGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGS+FQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNP+RVHIEIGPDGRVTGEADVEFATHEDAVAAM+KDKANMQHRYVELFLNSTAG SGG
Sbjct: 311  PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AY+H YVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSD+QSN+
Sbjct: 431  SGYDQVLQENSSDYQSNL 448



 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  + +++  FFS          +      +GR +GEA VE  + ++   
Sbjct: 10   GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKL 69

Query: 1103 AMSKDKANMQHRYVELFLNST 1165
            A+ KD+  M HRYVE+F +++
Sbjct: 70   ALKKDRETMGHRYVEVFKSNS 90


>ref|XP_861916.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) (FTP-3) isoform 3 [Canis familiaris].
          Length = 449

 Score =  736 bits (1900), Expect = 0.0
 Identities = 365/438 (83%), Positives = 373/438 (85%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEV RFFSDCKIQNG  GIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSN+VEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNG+TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRG GFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGTGFERMRRGAYGGGYGGYDDYGGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGS+FQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNP+RVHIEIGPDGRVTGEADVEFATHEDAVAAM+KDKANMQHRYVELFLNSTAG SGG
Sbjct: 311  PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AY+H YVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSD+QSN+
Sbjct: 431  SGYDQVLQENSSDYQSNL 448



 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  + +++  FFS          +      +GR +GEA VE  + ++   
Sbjct: 10   GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKL 69

Query: 1103 AMSKDKANMQHRYVELFLNST 1165
            A+ KD+  M HRYVE+F +++
Sbjct: 70   ALKKDRETMGHRYVEVFKSNS 90


>ref|XP_850619.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) (FTP-3) isoform 2 [Canis familiaris].
          Length = 449

 Score =  736 bits (1900), Expect = 0.0
 Identities = 365/438 (83%), Positives = 373/438 (85%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEV RFFSDCKIQNG  GIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSN+VEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNG+TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRG GFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGTGFERMRRGAYGGGYGGYDDYGGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGS+FQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNP+RVHIEIGPDGRVTGEADVEFATHEDAVAAM+KDKANMQHRYVELFLNSTAG SGG
Sbjct: 311  PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AY+H YVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSD+QSN+
Sbjct: 431  SGYDQVLQENSSDYQSNL 448



 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  + +++  FFS          +      +GR +GEA VE  + ++   
Sbjct: 10   GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKL 69

Query: 1103 AMSKDKANMQHRYVELFLNST 1165
            A+ KD+  M HRYVE+F +++
Sbjct: 70   ALKKDRETMGHRYVEVFKSNS 90


>ref|XP_538576.2| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
            (hnRNP H) isoform 2 [Canis familiaris].
          Length = 442

 Score =  734 bits (1894), Expect = 0.0
 Identities = 372/438 (84%), Positives = 372/438 (84%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGR       GMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGR-------GMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 303

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG
Sbjct: 304  PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 363

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AYEHRYVELFLN                   LSNQSSYGGPA                  
Sbjct: 364  AYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 423

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSDFQSNI
Sbjct: 424  SGYDQVLQENSSDFQSNI 441


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,714,042
Number of extensions: 1221039
Number of successful extensions: 5085
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 4577
Number of HSP's successfully gapped: 105
Length of query: 546
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 438
Effective length of database: 15,274,216
Effective search space: 6690106608
Effective search space used: 6690106608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007819
         (1638 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003123691.1| PREDICTED: heterogeneous nuclear ribonucleop...   757   0.0  
Alignment   gi|XP_003361999.1| PREDICTED: heterogeneous nuclear ribonucleop...   701   0.0  
Alignment   gi|XP_001929089.1| PREDICTED: heterogeneous nuclear ribonucleop...   578   e-165
Alignment   gi|XP_003359253.1| PREDICTED: heterogeneous nuclear ribonucleop...   578   e-165
Alignment   gi|NP_001230484.1| heterogeneous nuclear ribonucleoprotein H3 [...   355   4e-98
Alignment   gi|XP_003129120.1| PREDICTED: g-rich sequence factor 1-like [Su...   200   2e-51
Alignment   gi|XP_003355068.1| PREDICTED: epithelial splicing regulatory pr...   129   6e-30
Alignment   gi|XP_003125612.2| PREDICTED: epithelial splicing regulatory pr...   129   6e-30
Alignment   gi|XP_003360011.1| PREDICTED: RNA-binding protein 12 [Sus scrof...    82   9e-16
Alignment   gi|XP_003125614.1| PREDICTED: RNA-binding protein 12B [Sus scro...    75   1e-13

>ref|XP_003123691.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Sus scrofa].
          Length = 449

 Score =  757 bits (1954), Expect = 0.0
 Identities = 379/438 (86%), Positives = 379/438 (86%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AYEHRYVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSDFQSNI
Sbjct: 431  SGYDQVLQENSSDFQSNI 448



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  + +++  FFS          +      +GR +GEA VE  + ++   
Sbjct: 10   GFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKL 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+  M HRYVE+F
Sbjct: 70   ALKKDRETMGHRYVEVF 86


>ref|XP_003361999.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Sus
            scrofa].
          Length = 444

 Score =  701 bits (1810), Expect = 0.0
 Identities = 352/438 (80%), Positives = 361/438 (82%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEV RFFSDCKIQNG  GIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSN+VEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNG+             AFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGM-----XXXXXXXXAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 185

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 186  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYN 245

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGS+FQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 246  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFS 305

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNP+RVHIEIGPDGRVTGEADVEFATHEDAVAAM+KDKANMQHRYVELFLNSTAG SGG
Sbjct: 306  PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGG 365

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AY+H YVELFLN                   +SNQSSYGGPA                  
Sbjct: 366  AYDHSYVELFLNSTAGASGGAYGSQMMGGMGISNQSSYGGPASQQLSGGYGGGYGGQSSM 425

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSD+QSN+
Sbjct: 426  RGYDQVLQENSSDYQSNL 443



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  + +++  FFS          +      +GR +GEA VE  + ++   
Sbjct: 10   GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKL 69

Query: 1103 AMSKDKANMQHRYVELFLNST 1165
            A+ KD+  M HRYVE+F +++
Sbjct: 70   ALKKDRETMGHRYVEVFKSNS 90


>ref|XP_001929089.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5 [Sus
            scrofa].
          Length = 414

 Score =  578 bits (1490), Expect = e-165
 Identities = 278/368 (75%), Positives = 311/368 (84%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVK+RGLPWSCS ++VQ F SDC I++GA G+ FIYTREGR SGEAFVELESED+VK+A
Sbjct: 11   FVVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS DTANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG ERMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGDG  T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATH++AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHDEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQMMQ 378



 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
 Frame = +2

Query: 401 DGFV-RLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQEIAE 571
           +GFV +LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S++  +
Sbjct: 9   EGFVVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVK 68

Query: 572 KALKKHKERIGHRYIEIFKSSRAEV 646
            ALKK +E +GHRYIE+FKS R E+
Sbjct: 69  MALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GFVVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKM 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|XP_003359253.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Sus scrofa].
          Length = 414

 Score =  578 bits (1490), Expect = e-165
 Identities = 278/368 (75%), Positives = 311/368 (84%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVK+RGLPWSCS ++VQ F SDC I++GA G+ FIYTREGR SGEAFVELESED+VK+A
Sbjct: 11   FVVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS DTANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG ERMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRSGAYSAGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGDG  T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATH++AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHDEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQMMQ 378



 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
 Frame = +2

Query: 401 DGFV-RLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQEIAE 571
           +GFV +LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S++  +
Sbjct: 9   EGFVVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVK 68

Query: 572 KALKKHKERIGHRYIEIFKSSRAEV 646
            ALKK +E +GHRYIE+FKS R E+
Sbjct: 69  MALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GFVVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKM 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_001230484.1| heterogeneous nuclear ribonucleoprotein H3 [Sus scrofa].
          Length = 346

 Score =  355 bits (911), Expect = 4e-98
 Identities = 187/281 (66%), Positives = 207/281 (73%), Gaps = 3/281 (1%)
 Frame = +2

Query: 350  MDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRST 529
            MDWV+KH GPN    A+DG VRLRGLPFGCSKEEIVQFF GLEIVPNGITL +D+QGRST
Sbjct: 1    MDWVMKHNGPND---ASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRST 57

Query: 530  GEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDR 709
            GEAFVQFAS+EIAE AL KHKERIGHRYIEIF+SSR+E++  YDPPR+L+  QRPGPYDR
Sbjct: 58   GEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLG-QRPGPYDR 116

Query: 710  PGAGR-GYNSIGRGAGFERMRRGA-XXXXXXXXXXXXXXXXXXXFGSDRFGRDLNYCFSG 883
            P  GR GY   GRG+ ++RMRRG                     +G+D F  D      G
Sbjct: 117  PIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFD-DRMRDGRG 175

Query: 884  MSDHRYGDGGSTFQS-TTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTG 1060
            M  H YG  G        GH VHMRGLP+RATENDI NFFSPLNP+RVHI+IG DGR TG
Sbjct: 176  MGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATG 235

Query: 1061 EADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            EADVEF THEDAVAAMSKDK NMQHRY+ELFLNST G   G
Sbjct: 236  EADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSG 276



 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 33/81 (40%), Positives = 53/81 (65%)
 Frame = +2

Query: 110 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 289
           V++RGLP+ CS +E+ +FF   +I     GI      +GR +GEAFV+  S++  + AL 
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75

Query: 290 KDRETMGHRYVEVFKSNNVEM 352
           K +E +GHRY+E+F+S+  E+
Sbjct: 76  KHKERIGHRYIEIFRSSRSEI 96


>ref|XP_003129120.1| PREDICTED: g-rich sequence factor 1-like [Sus scrofa].
          Length = 479

 Score =  200 bits (508), Expect = 2e-51
 Identities = 96/185 (51%), Positives = 136/185 (73%), Gaps = 1/185 (0%)
 Frame = +2

Query: 104 FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
           ++++ +GLPWSC+ ++V  FFSDC+I+NG  GI F+  R+G+  G+A +E+ESE +V+ A
Sbjct: 149 YLIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 208

Query: 284 LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
           L+K R  MG RYVEV++ NN ++D ++K+    S    NDG VRLRGLP+ C++++IV F
Sbjct: 209 LEKHRMYMGQRYVEVYEINNEDVDALMKNLHVKSTPVVNDGVVRLRGLPYSCNEKDIVDF 268

Query: 464 FSGLEIVPNGITLPVDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA 640
           F+GL IV   IT  +D++G R TGEA+VQF   E+A +AL KH+E IG+RYIEIF S R 
Sbjct: 269 FAGLHIV--DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRN 326

Query: 641 EVRTH 655
           EVRTH
Sbjct: 327 EVRTH 331



 Score =  107 bits (266), Expect = 3e-23
 Identities = 48/75 (64%), Positives = 59/75 (78%)
 Frame = +2

Query: 938  HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 1117
            H VHMRGLP++A   DI NFF+PL PVR+ +E    G+ TGEADV F THEDAVAAM KD
Sbjct: 400  HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 459

Query: 1118 KANMQHRYVELFLNS 1162
            ++++ HRY+ELFLNS
Sbjct: 460  RSHVHHRYIELFLNS 474



 Score = 92.0 bits (227), Expect = 8e-19
 Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 55/231 (23%)
 Frame = +2

Query: 107 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGR-PSGEAFVELESEDEVKLA 283
           VV++RGLP+SC+  ++  FF+   I +    I F+    GR  +GEA+V+ E  +    A
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLHIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 305

Query: 284 LKKDRETMGHRYVEVFKSNN---------------------------------------- 343
           L K RE +G+RY+E+F S                                          
Sbjct: 306 LLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEENEVNEDV 365

Query: 344 -----------VEMDWVLKHTGPNSPD---TANDGFVRLRGLPFGCSKEEIVQFFSGLEI 481
                      +E+   +    P + D   T++  FV +RGLPF  + ++I+ FF+ L+ 
Sbjct: 366 RPMTAFESEKEIELPKEMSEKLPEAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 424

Query: 482 VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 634
            P  IT+     G++TGEA V F + E A  A+ K +  + HRYIE+F +S
Sbjct: 425 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 474



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = +2

Query: 944  VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 1120
            V +RGLPY   E DI +FF+ L+ V +   +   G R TGEA V+F   E A  A+ K +
Sbjct: 251  VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 310

Query: 1121 ANMQHRYVELF 1153
              + +RY+E+F
Sbjct: 311  EEIGNRYIEIF 321


>ref|XP_003355068.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 2
           [Sus scrofa].
          Length = 608

 Score =  129 bits (323), Expect = 6e-30
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 12/193 (6%)
 Frame = +2

Query: 107 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 286
           VV+ RGLPW  S  ++ RFF    I  G  G       +GR +GEA V   SE+   LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283

Query: 287 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 448
           ++ +  MG RY+EV+K+   +    LK  G  S + A      N   VR+RGLPF  + +
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAD 340

Query: 449 EIVQFFSGLEIVPNG------ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 610
           E+V FF     +  G      +T P    GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397

Query: 611 YIEIFKSSRAEVR 649
           YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410



 Score =  117 bits (292), Expect = 2e-26
 Identities = 71/202 (35%), Positives = 114/202 (56%), Gaps = 22/202 (10%)
 Frame = +2

Query: 107 VVKVRGLPWSCSADEVQRFFSD-CKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
           +V++RGLP++ +ADEV  FF   C I  G +GI F+   +GRP+G+AFV    E+  + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 284 LKKDRETMGHRYVEVFKSNNVEMDWVLKH----------TGPNSP--------DTANDGF 409
           L+K ++ +G RY+E+F+S   E+  VL            T P  P         T     
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVTPTNVRDC 446

Query: 410 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 583
           +RLRGLP+  + E+I+ F      +I  +G+ + ++ QGR +G+AF+Q  S + A  A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 584 K-HKERIGHRYIEIFKSSRAEV 646
           K HK+ +  RY+E+F+ S  E+
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEM 528



 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
 Frame = +2

Query: 110 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 289
           +++RGLP++ + +++  F  +        G+  +   +GRPSG+AF++++S D   +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 290 K-DRETMGHRYVEVFKSNNVEMDWVL 364
           K  ++TM  RYVEVF+ +  EM++VL
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEMNFVL 532



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
 Frame = +2

Query: 944  VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 1108
            V MRGLP+ AT +++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 328  VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387

Query: 1109 SKDKANMQHRYVELFLNSTA 1168
             K K  +  RY+ELF ++ A
Sbjct: 388  RKHKDLLGKRYIELFRSTAA 407


>ref|XP_003125612.2| PREDICTED: epithelial splicing regulatory protein 1-like isoform 1
           [Sus scrofa].
          Length = 681

 Score =  129 bits (323), Expect = 6e-30
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 12/193 (6%)
 Frame = +2

Query: 107 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 286
           VV+ RGLPW  S  ++ RFF    I  G  G       +GR +GEA V   SE+   LAL
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLAL 283

Query: 287 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTA------NDGFVRLRGLPFGCSKE 448
           ++ +  MG RY+EV+K+   +    LK  G  S + A      N   VR+RGLPF  + +
Sbjct: 284 QRHKHHMGTRYIEVYKATGEDF---LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAD 340

Query: 449 EIVQFFSGLEIVPNG------ITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 610
           E+V FF     +  G      +T P    GR TG+AFV FA +E A+ AL+KHK+ +G R
Sbjct: 341 EVVAFFGQHCPITGGKEGILFVTYP---DGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 397

Query: 611 YIEIFKSSRAEVR 649
           YIE+F+S+ AEV+
Sbjct: 398 YIELFRSTAAEVQ 410



 Score =  117 bits (292), Expect = 2e-26
 Identities = 71/202 (35%), Positives = 114/202 (56%), Gaps = 22/202 (10%)
 Frame = +2

Query: 107 VVKVRGLPWSCSADEVQRFFSD-CKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
           +V++RGLP++ +ADEV  FF   C I  G +GI F+   +GRP+G+AFV    E+  + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386

Query: 284 LKKDRETMGHRYVEVFKSNNVEMDWVLKH----------TGPNSP--------DTANDGF 409
           L+K ++ +G RY+E+F+S   E+  VL            T P  P         T     
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVTPTNVRDC 446

Query: 410 VRLRGLPFGCSKEEIVQFFS--GLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 583
           +RLRGLP+  + E+I+ F      +I  +G+ + ++ QGR +G+AF+Q  S + A  A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 584 K-HKERIGHRYIEIFKSSRAEV 646
           K HK+ +  RY+E+F+ S  E+
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEM 528



 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
 Frame = +2

Query: 110 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 289
           +++RGLP++ + +++  F  +        G+  +   +GRPSG+AF++++S D   +A +
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQ 506

Query: 290 K-DRETMGHRYVEVFKSNNVEMDWVL 364
           K  ++TM  RYVEVF+ +  EM++VL
Sbjct: 507 KCHKKTMKDRYVEVFQCSAEEMNFVL 532



 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
 Frame = +2

Query: 944  VHMRGLPYRATENDIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAM 1108
            V MRGLP+ AT +++  FF    P+      +     PDGR TG+A V FA  E A  A+
Sbjct: 328  VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387

Query: 1109 SKDKANMQHRYVELFLNSTA 1168
             K K  +  RY+ELF ++ A
Sbjct: 388  RKHKDLLGKRYIELFRSTAA 407


>ref|XP_003360011.1| PREDICTED: RNA-binding protein 12 [Sus scrofa].
          Length = 762

 Score = 82.0 bits (201), Expect = 9e-16
 Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 34/222 (15%)
 Frame = +2

Query: 110 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 289
           V V G+P+S   ++V+ FF   ++      +  +    GR +G   V+  S  +   ALK
Sbjct: 145 VSVHGMPFSAVENDVREFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 200

Query: 290 KDRETMGHRYVEVFKSNNVEMDWVL---------------------------------KH 370
           ++R  M  RYVEV  S   E  WV                                  K 
Sbjct: 201 RNRMLMIQRYVEV--SPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKR 258

Query: 371 TGPNSPDTANDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQ 547
           +   SP  A  GF V L+GLPF    + ++ FF  L+IV + I +     G++TGE FV+
Sbjct: 259 SRSRSPHEA--GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVE 316

Query: 548 FASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRK 673
           F ++   + AL +HK+ +G+R+I++   ++  +    D  RK
Sbjct: 317 FRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRK 358



 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 20/224 (8%)
 Frame = +2

Query: 104 FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
           F V ++GLP+      V  FF   K+      I   Y   G+ +GE FVE  +E + K A
Sbjct: 269 FCVYLKGLPFEAENKHVIDFFK--KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAA 326

Query: 284 LKKDRETMGHRYVEVF----KSNNVEMDWVLKHTGPNSPDTAN-----DGFVR------- 415
           L + ++ MG+R+++V     K    ++D + K     S D        +G V        
Sbjct: 327 LCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVNSAKVCAH 386

Query: 416 LRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKE 595
           +  +PF  +K +++QF  G+ +  N + + VD  G+  G+A VQF +++ A K+ + H++
Sbjct: 387 ITNIPFSVTKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRK 446

Query: 596 RIGHRYIEIFKSSRAEVR-THYDPP---RKLMAMQRPGPYDRPG 715
           ++  R   +   +  ++R    +PP   +K + M  PG    PG
Sbjct: 447 KLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 490



 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEDAVAAM 1108
            G CV+++GLP+ A    + +FF  L+ V   ++I  GP+G+ TGE  VEF    D  AA+
Sbjct: 268  GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 327

Query: 1109 SKDKANMQHRYVEL 1150
             + K  M +R++++
Sbjct: 328  CRHKQYMGNRFIQV 341


>ref|XP_003125614.1| PREDICTED: RNA-binding protein 12B [Sus scrofa].
          Length = 986

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 72/257 (28%), Positives = 112/257 (43%), Gaps = 6/257 (2%)
 Frame = +2

Query: 410  VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 589
            +RL GLPF     +I  FF+GL I   G+ +     G   GEAF+ FA+ E A +A+ + 
Sbjct: 5    IRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEVGEAFIIFATDEDARRAISRS 60

Query: 590  KERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGF-ERM 766
               I    +E+F SS+AE+       +K + M+R     R   G G   +G  + F E +
Sbjct: 61   GGFIKDSSVELFLSSKAEM-------QKTIEMKRTDRMGRDRPGSGAPGVGSLSNFVEAL 113

Query: 767  RRGAXXXXXXXXXXXXXXXXXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQST----- 931
            +  A                     +  +G  +N   +G   +  G G    + T     
Sbjct: 114  KEEA--------------------SNSGYGSPINQ-DAGFHTNGTGHGDLRPRKTRPLKA 152

Query: 932  TGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMS 1111
                + +RGLPY   E+D+  FFS L    V      DGR  G+A V+FA+  DA   + 
Sbjct: 153  ENPYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLK 212

Query: 1112 KDKANMQHRYVELFLNS 1162
              ++ M  R++E+   S
Sbjct: 213  CHRSFMGSRFIEVMQGS 229



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 58/237 (24%)
 Frame = +2

Query: 107 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 286
           V+++ GLP+     +++ FF+   I +G  G+  I    G   GEAF+   ++++ + A+
Sbjct: 4   VIRLLGLPFIAGPVDIRHFFTGLTIPDG--GVHII----GGEVGEAFIIFATDEDARRAI 57

Query: 287 K----------------------------------KDRETMG-------HRYVEVFKSN- 340
                                              +DR   G         +VE  K   
Sbjct: 58  SRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRMGRDRPGSGAPGVGSLSNFVEALKEEA 117

Query: 341 ---------NVEMDWVLKHTGPNS-------PDTANDGFVRLRGLPFGCSKEEIVQFFSG 472
                    N +  +    TG          P  A + ++ LRGLP+  +++++  FFSG
Sbjct: 118 SNSGYGSPINQDAGFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSG 177

Query: 473 LEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
           L +  +G+       GR+ G+A V+FAS   A   LK H+  +G R+IE+ + S  +
Sbjct: 178 LCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQ 232



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 19/184 (10%)
 Frame = +2

Query: 104 FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
           F V ++ L  S +  +++ FF D  + N  + IRF+Y  E R +  AFV  ++  +   A
Sbjct: 284 FYVHLKNLSLSINKRDLRNFFRDTDLTN--EQIRFLYKDERR-TRYAFVMFKTLKDYNTA 340

Query: 284 LKKDRETMGHRYVEVFKSNNVEMDWVLK-------------HTGPNSPDTANDGF----- 409
           L   +  + +R V +   +  +M   ++               G  S   + +G+     
Sbjct: 341 LGLHKTVLQYRPVHIDPVSRKQMLKFIECYEKKRPASIEKEKLGHISQKYSQEGYSGQKL 400

Query: 410 -VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK 586
            + +R  PF  +K E+ +FF+   +  + I L  D +G   GEA V+F S+E A KA + 
Sbjct: 401 CIYIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGIGLGEALVKFKSEEQAMKAERL 460

Query: 587 HKER 598
           ++ R
Sbjct: 461 NRRR 464



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 33/210 (15%)
 Frame = +2

Query: 116 VRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKD 295
           +RGLP+  + D+V+ FFS   +     G+ F+   +GR +G+A V+  S  +    LK  
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVD----GVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214

Query: 296 RETMGHRYVEV----------FKSNNVEMDWVLKHTGPNS-PDTANDG------------ 406
           R  MG R++EV          F  N ++ D +   T  +S P   ND             
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAMKEDDIPMRTEEHSQPRGINDRHFRKRSHSKSPR 274

Query: 407 ----------FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFAS 556
                     +V L+ L    +K ++  FF   ++    I      + R T  AFV F +
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDE-RRTRYAFVMFKT 333

Query: 557 QEIAEKALKKHKERIGHRYIEIFKSSRAEV 646
            +    AL  HK  + +R + I   SR ++
Sbjct: 334 LKDYNTALGLHKTVLQYRPVHIDPVSRKQM 363


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,045,104
Number of extensions: 754891
Number of successful extensions: 2748
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2606
Number of HSP's successfully gapped: 42
Length of query: 546
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 442
Effective length of database: 8,754,644
Effective search space: 3869552648
Effective search space used: 3869552648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007819
         (1638 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_067485.1| heterogeneous nuclear ribonucleoprotein H [Mus ...   757   0.0  
Alignment   gi|NP_063921.1| heterogeneous nuclear ribonucleoprotein H2 [Mus...   734   0.0  
Alignment   gi|NP_001159904.1| heterogeneous nuclear ribonucleoprotein F [M...   572   e-163
Alignment   gi|NP_001159903.1| heterogeneous nuclear ribonucleoprotein F [M...   572   e-163
Alignment   gi|NP_001159902.1| heterogeneous nuclear ribonucleoprotein F [M...   572   e-163
Alignment   gi|NP_001159901.1| heterogeneous nuclear ribonucleoprotein F [M...   572   e-163
Alignment   gi|NP_001159900.1| heterogeneous nuclear ribonucleoprotein F [M...   572   e-163
Alignment   gi|NP_001159899.1| heterogeneous nuclear ribonucleoprotein F [M...   572   e-163
Alignment   gi|NP_598595.1| heterogeneous nuclear ribonucleoprotein F [Mus ...   572   e-163
Alignment   gi|NP_001073293.1| heterogeneous nuclear ribonucleoprotein H3 [...   355   6e-98

>ref|NP_067485.1| heterogeneous nuclear ribonucleoprotein H [Mus musculus].
          Length = 449

 Score =  757 bits (1954), Expect = 0.0
 Identities = 379/438 (86%), Positives = 379/438 (86%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AYEHRYVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSDFQSNI
Sbjct: 431  SGYDQVLQENSSDFQSNI 448



 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  + +++  FFS          +      +GR +GEA VE  + ++   
Sbjct: 10   GFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKL 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+  M HRYVE+F
Sbjct: 70   ALKKDRETMGHRYVEVF 86


>ref|NP_063921.1| heterogeneous nuclear ribonucleoprotein H2 [Mus musculus].
          Length = 449

 Score =  734 bits (1895), Expect = 0.0
 Identities = 363/438 (82%), Positives = 373/438 (85%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSA+EV RFFSDCKIQNG  G+RFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSN+VEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNG+TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLM MQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMTMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGS+FQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNP+RVHIEIGPDGRVTGEADVEFATHEDAVAAM+KDKANMQHRYVELFLNSTAG SGG
Sbjct: 311  PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AY+H YVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSD+QSN+
Sbjct: 431  SGYDQVLQENSSDYQSNL 448



 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  +  ++  FFS          V      +GR +GEA VE  + ++   
Sbjct: 10   GFVVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKL 69

Query: 1103 AMSKDKANMQHRYVELFLNST 1165
            A+ KD+  M HRYVE+F +++
Sbjct: 70   ALKKDRETMGHRYVEVFKSNS 90


>ref|NP_001159904.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  572 bits (1473), Expect = e-163
 Identities = 275/368 (74%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            +VVK+RGLPWSCS ++VQ F SDC I +G  G+ FIYTREGR SGEAFVELESED+VKLA
Sbjct: 11   YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG +RMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
 Frame = +2

Query: 386 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQ 559
           P+      V+LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S+
Sbjct: 5   PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE 64

Query: 560 EIAEKALKKHKERIGHRYIEIFKSSRAEV 646
           +  + ALKK +E +GHRYIE+FKS R E+
Sbjct: 65  DDVKLALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G+ V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_001159903.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  572 bits (1473), Expect = e-163
 Identities = 275/368 (74%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            +VVK+RGLPWSCS ++VQ F SDC I +G  G+ FIYTREGR SGEAFVELESED+VKLA
Sbjct: 11   YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG +RMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
 Frame = +2

Query: 386 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQ 559
           P+      V+LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S+
Sbjct: 5   PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE 64

Query: 560 EIAEKALKKHKERIGHRYIEIFKSSRAEV 646
           +  + ALKK +E +GHRYIE+FKS R E+
Sbjct: 65  DDVKLALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G+ V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_001159902.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  572 bits (1473), Expect = e-163
 Identities = 275/368 (74%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            +VVK+RGLPWSCS ++VQ F SDC I +G  G+ FIYTREGR SGEAFVELESED+VKLA
Sbjct: 11   YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG +RMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
 Frame = +2

Query: 386 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQ 559
           P+      V+LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S+
Sbjct: 5   PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE 64

Query: 560 EIAEKALKKHKERIGHRYIEIFKSSRAEV 646
           +  + ALKK +E +GHRYIE+FKS R E+
Sbjct: 65  DDVKLALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G+ V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_001159901.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  572 bits (1473), Expect = e-163
 Identities = 275/368 (74%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            +VVK+RGLPWSCS ++VQ F SDC I +G  G+ FIYTREGR SGEAFVELESED+VKLA
Sbjct: 11   YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG +RMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
 Frame = +2

Query: 386 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQ 559
           P+      V+LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S+
Sbjct: 5   PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE 64

Query: 560 EIAEKALKKHKERIGHRYIEIFKSSRAEV 646
           +  + ALKK +E +GHRYIE+FKS R E+
Sbjct: 65  DDVKLALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G+ V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_001159900.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  572 bits (1473), Expect = e-163
 Identities = 275/368 (74%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            +VVK+RGLPWSCS ++VQ F SDC I +G  G+ FIYTREGR SGEAFVELESED+VKLA
Sbjct: 11   YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG +RMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
 Frame = +2

Query: 386 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQ 559
           P+      V+LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S+
Sbjct: 5   PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE 64

Query: 560 EIAEKALKKHKERIGHRYIEIFKSSRAEV 646
           +  + ALKK +E +GHRYIE+FKS R E+
Sbjct: 65  DDVKLALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G+ V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_001159899.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  572 bits (1473), Expect = e-163
 Identities = 275/368 (74%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            +VVK+RGLPWSCS ++VQ F SDC I +G  G+ FIYTREGR SGEAFVELESED+VKLA
Sbjct: 11   YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG +RMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
 Frame = +2

Query: 386 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQ 559
           P+      V+LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S+
Sbjct: 5   PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE 64

Query: 560 EIAEKALKKHKERIGHRYIEIFKSSRAEV 646
           +  + ALKK +E +GHRYIE+FKS R E+
Sbjct: 65  DDVKLALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G+ V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_598595.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus].
          Length = 415

 Score =  572 bits (1473), Expect = e-163
 Identities = 275/368 (74%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            +VVK+RGLPWSCS ++VQ F SDC I +G  G+ FIYTREGR SGEAFVELESED+VKLA
Sbjct: 11   YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG +RMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
 Frame = +2

Query: 386 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQ 559
           P+      V+LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S+
Sbjct: 5   PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE 64

Query: 560 EIAEKALKKHKERIGHRYIEIFKSSRAEV 646
           +  + ALKK +E +GHRYIE+FKS R E+
Sbjct: 65  DDVKLALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G+ V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_001073293.1| heterogeneous nuclear ribonucleoprotein H3 [Mus musculus].
          Length = 346

 Score =  355 bits (911), Expect = 6e-98
 Identities = 187/281 (66%), Positives = 207/281 (73%), Gaps = 3/281 (1%)
 Frame = +2

Query: 350  MDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRST 529
            MDWV+KH GPN    A+DG VRLRGLPFGCSKEEIVQFF GLEIVPNGITL +D+QGRST
Sbjct: 1    MDWVMKHNGPND---ASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRST 57

Query: 530  GEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDR 709
            GEAFVQFAS+EIAE AL KHKERIGHRYIEIF+SSR+E++  YDPPR+L+  QRPGPYDR
Sbjct: 58   GEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLG-QRPGPYDR 116

Query: 710  PGAGR-GYNSIGRGAGFERMRRGA-XXXXXXXXXXXXXXXXXXXFGSDRFGRDLNYCFSG 883
            P  GR GY   GRG+ ++RMRRG                     +G+D F  D      G
Sbjct: 117  PIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFD-DRMRDGRG 175

Query: 884  MSDHRYGDGGSTFQS-TTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTG 1060
            M  H YG  G        GH VHMRGLP+RATENDI NFFSPLNP+RVHI+IG DGR TG
Sbjct: 176  MGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATG 235

Query: 1061 EADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            EADVEF THEDAVAAMSKDK NMQHRY+ELFLNST G   G
Sbjct: 236  EADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSG 276



 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 33/81 (40%), Positives = 53/81 (65%)
 Frame = +2

Query: 110 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 289
           V++RGLP+ CS +E+ +FF   +I     GI      +GR +GEAFV+  S++  + AL 
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75

Query: 290 KDRETMGHRYVEVFKSNNVEM 352
           K +E +GHRY+E+F+S+  E+
Sbjct: 76  KHKERIGHRYIEIFRSSRSEI 96


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,258,417
Number of extensions: 1034384
Number of successful extensions: 3935
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 3709
Number of HSP's successfully gapped: 67
Length of query: 546
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 440
Effective length of database: 12,433,743
Effective search space: 5470846920
Effective search space used: 5470846920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007819
         (1638 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005511.1| heterogeneous nuclear ribonucleoprotein H [Homo...   757   0.0  
Alignment   gi|NP_001027565.1| heterogeneous nuclear ribonucleoprotein H2 [...   736   0.0  
Alignment   gi|NP_062543.1| heterogeneous nuclear ribonucleoprotein H2 [Hom...   736   0.0  
Alignment   gi|NP_001091676.1| heterogeneous nuclear ribonucleoprotein F [H...   572   e-163
Alignment   gi|NP_001091674.1| heterogeneous nuclear ribonucleoprotein F [H...   572   e-163
Alignment   gi|NP_001091675.1| heterogeneous nuclear ribonucleoprotein F [H...   572   e-163
Alignment   gi|NP_001091677.1| heterogeneous nuclear ribonucleoprotein F [H...   572   e-163
Alignment   gi|NP_001091678.1| heterogeneous nuclear ribonucleoprotein F [H...   572   e-163
Alignment   gi|NP_004957.1| heterogeneous nuclear ribonucleoprotein F [Homo...   572   e-163
Alignment   gi|NP_036339.1| heterogeneous nuclear ribonucleoprotein H3 isof...   355   7e-98

>ref|NP_005511.1| heterogeneous nuclear ribonucleoprotein H [Homo sapiens].
          Length = 449

 Score =  757 bits (1954), Expect = 0.0
 Identities = 379/438 (86%), Positives = 379/438 (86%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AYEHRYVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYEHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSDFQSNI
Sbjct: 431  SGYDQVLQENSSDFQSNI 448


>ref|NP_001027565.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens].
          Length = 449

 Score =  736 bits (1900), Expect = 0.0
 Identities = 365/438 (83%), Positives = 374/438 (85%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEV RFFSDCKIQNG  GIRFIYTREGRPSGEAFVELESE+EVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSN+VEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNG+TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGS+FQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNP+RVHIEIGPDGRVTGEADVEFATHEDAVAAM+KDKANMQHRYVELFLNSTAG SGG
Sbjct: 311  PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AY+H YVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSD+QSN+
Sbjct: 431  SGYDQVLQENSSDYQSNL 448



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  + +++  FFS          +      +GR +GEA VE  + E+   
Sbjct: 10   GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKL 69

Query: 1103 AMSKDKANMQHRYVELFLNST 1165
            A+ KD+  M HRYVE+F +++
Sbjct: 70   ALKKDRETMGHRYVEVFKSNS 90


>ref|NP_062543.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens].
          Length = 449

 Score =  736 bits (1900), Expect = 0.0
 Identities = 365/438 (83%), Positives = 374/438 (85%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVKVRGLPWSCSADEV RFFSDCKIQNG  GIRFIYTREGRPSGEAFVELESE+EVKLA
Sbjct: 11   FVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRETMGHRYVEVFKSN+VEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF
Sbjct: 71   LKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNG+TLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE
Sbjct: 131  FSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGA               
Sbjct: 191  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYN 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                FGSDRFGRDLNYCFSGMSDHRYGDGGS+FQSTTGHCVHMRGLPYRATENDIYNFFS
Sbjct: 251  DGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNP+RVHIEIGPDGRVTGEADVEFATHEDAVAAM+KDKANMQHRYVELFLNSTAG SGG
Sbjct: 311  PLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGG 370

Query: 1184 AYEHRYVELFLNXXXXXXXXXXXXXXXXXXXLSNQSSYGGPAXXXXXXXXXXXXXXXXXX 1363
            AY+H YVELFLN                   LSNQSSYGGPA                  
Sbjct: 371  AYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSM 430

Query: 1364 XXXDQVLQENSSDFQSNI 1417
               DQVLQENSSD+QSN+
Sbjct: 431  SGYDQVLQENSSDYQSNL 448



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  + +++  FFS          +      +GR +GEA VE  + E+   
Sbjct: 10   GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKL 69

Query: 1103 AMSKDKANMQHRYVELFLNST 1165
            A+ KD+  M HRYVE+F +++
Sbjct: 70   ALKKDRETMGHRYVEVFKSNS 90


>ref|NP_001091676.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens].
          Length = 415

 Score =  572 bits (1474), Expect = e-163
 Identities = 276/368 (75%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVEL SED+VK+A
Sbjct: 11   FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG ERMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
 Frame = +2

Query: 401 DGFV-RLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQEIAE 571
           +GFV +LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S++  +
Sbjct: 9   EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVK 68

Query: 572 KALKKHKERIGHRYIEIFKSSRAEV 646
            ALKK +E +GHRYIE+FKS R E+
Sbjct: 69  MALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_001091674.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens].
          Length = 415

 Score =  572 bits (1474), Expect = e-163
 Identities = 276/368 (75%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVEL SED+VK+A
Sbjct: 11   FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG ERMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
 Frame = +2

Query: 401 DGFV-RLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQEIAE 571
           +GFV +LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S++  +
Sbjct: 9   EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVK 68

Query: 572 KALKKHKERIGHRYIEIFKSSRAEV 646
            ALKK +E +GHRYIE+FKS R E+
Sbjct: 69  MALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_001091675.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens].
          Length = 415

 Score =  572 bits (1474), Expect = e-163
 Identities = 276/368 (75%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVEL SED+VK+A
Sbjct: 11   FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG ERMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
 Frame = +2

Query: 401 DGFV-RLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQEIAE 571
           +GFV +LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S++  +
Sbjct: 9   EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVK 68

Query: 572 KALKKHKERIGHRYIEIFKSSRAEV 646
            ALKK +E +GHRYIE+FKS R E+
Sbjct: 69  MALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_001091677.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens].
          Length = 415

 Score =  572 bits (1474), Expect = e-163
 Identities = 276/368 (75%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVEL SED+VK+A
Sbjct: 11   FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG ERMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
 Frame = +2

Query: 401 DGFV-RLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQEIAE 571
           +GFV +LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S++  +
Sbjct: 9   EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVK 68

Query: 572 KALKKHKERIGHRYIEIFKSSRAEV 646
            ALKK +E +GHRYIE+FKS R E+
Sbjct: 69  MALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_001091678.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens].
          Length = 415

 Score =  572 bits (1474), Expect = e-163
 Identities = 276/368 (75%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVEL SED+VK+A
Sbjct: 11   FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG ERMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
 Frame = +2

Query: 401 DGFV-RLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQEIAE 571
           +GFV +LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S++  +
Sbjct: 9   EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVK 68

Query: 572 KALKKHKERIGHRYIEIFKSSRAEV 646
            ALKK +E +GHRYIE+FKS R E+
Sbjct: 69  MALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_004957.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens].
          Length = 415

 Score =  572 bits (1474), Expect = e-163
 Identities = 276/368 (75%), Positives = 308/368 (83%)
 Frame = +2

Query: 104  FVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLA 283
            FVVK+RGLPWSCS ++VQ F SDC I +GA G+ FIYTREGR SGEAFVEL SED+VK+A
Sbjct: 11   FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA 70

Query: 284  LKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQF 463
            LKKDRE+MGHRY+EVFKS+  EMDWVLKH+GPNS D+ANDGFVRLRGLPFGC+KEEIVQF
Sbjct: 71   LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQF 130

Query: 464  FSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 643
            FSGLEIVPNGITLPVD +G+ TGEAFVQFASQE+AEKAL KHKERIGHRYIE+FKSS+ E
Sbjct: 131  FSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190

Query: 644  VRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAXXXXXXXXXXXXXXX 823
            VR++ DPP K M++QRPGPYDRPG  R Y  I + AG ERMR GA               
Sbjct: 191  VRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLS 250

Query: 824  XXXXFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFS 1003
                F +D FGRDL+YC SGM DHRYGD   T QSTTGHCVHMRGLPY+ATENDIYNFFS
Sbjct: 251  DGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 310

Query: 1004 PLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            PLNPVRVHIEIGPDGRVTGEADVEFATHE+AVAAMSKD+ANMQHRY+ELFLNST GAS G
Sbjct: 311  PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 370

Query: 1184 AYEHRYVE 1207
            AY  + ++
Sbjct: 371  AYSSQVMQ 378



 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
 Frame = +2

Query: 401 DGFV-RLRGLPFGCSKEEIVQFFSGLEIVPN--GITLPVDFQGRSTGEAFVQFASQEIAE 571
           +GFV +LRGLP+ CS E++  F S   I     G+      +GR +GEAFV+  S++  +
Sbjct: 9   EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVK 68

Query: 572 KALKKHKERIGHRYIEIFKSSRAEV 646
            ALKK +E +GHRYIE+FKS R E+
Sbjct: 69  MALKKDRESMGHRYIEVFKSHRTEM 93



 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = +2

Query: 935  GHCVHMRGLPYRATENDIYNFFSPL----NPVRVHIEIGPDGRVTGEADVEFATHEDAVA 1102
            G  V +RGLP+  +  D+ NF S          VH     +GR +GEA VE  + +D   
Sbjct: 10   GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69

Query: 1103 AMSKDKANMQHRYVELF 1153
            A+ KD+ +M HRY+E+F
Sbjct: 70   ALKKDRESMGHRYIEVF 86


>ref|NP_036339.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Homo sapiens].
          Length = 346

 Score =  355 bits (911), Expect = 7e-98
 Identities = 187/281 (66%), Positives = 207/281 (73%), Gaps = 3/281 (1%)
 Frame = +2

Query: 350  MDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRST 529
            MDWV+KH GPN    A+DG VRLRGLPFGCSKEEIVQFF GLEIVPNGITL +D+QGRST
Sbjct: 1    MDWVMKHNGPND---ASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRST 57

Query: 530  GEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDR 709
            GEAFVQFAS+EIAE AL KHKERIGHRYIEIF+SSR+E++  YDPPR+L+  QRPGPYDR
Sbjct: 58   GEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLG-QRPGPYDR 116

Query: 710  PGAGR-GYNSIGRGAGFERMRRGA-XXXXXXXXXXXXXXXXXXXFGSDRFGRDLNYCFSG 883
            P  GR GY   GRG+ ++RMRRG                     +G+D F  D      G
Sbjct: 117  PIGGRGGYYGAGRGSMYDRMRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFD-DRMRDGRG 175

Query: 884  MSDHRYGDGGSTFQS-TTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTG 1060
            M  H YG  G        GH VHMRGLP+RATENDI NFFSPLNP+RVHI+IG DGR TG
Sbjct: 176  MGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATG 235

Query: 1061 EADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGG 1183
            EADVEF THEDAVAAMSKDK NMQHRY+ELFLNST G   G
Sbjct: 236  EADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSG 276



 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 33/81 (40%), Positives = 53/81 (65%)
 Frame = +2

Query: 110 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 289
           V++RGLP+ CS +E+ +FF   +I     GI      +GR +GEAFV+  S++  + AL 
Sbjct: 18  VRLRGLPFGCSKEEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75

Query: 290 KDRETMGHRYVEVFKSNNVEM 352
           K +E +GHRY+E+F+S+  E+
Sbjct: 76  KHKERIGHRYIEIFRSSRSEI 96


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,930,216
Number of extensions: 1212000
Number of successful extensions: 4516
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4226
Number of HSP's successfully gapped: 103
Length of query: 546
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 438
Effective length of database: 14,737,052
Effective search space: 6454828776
Effective search space used: 6454828776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007819
         (1638 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL896183.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   874   0.0  
Sscrofa_Chr02                                                         416   e-113
Sscrofa_Chr14                                                         341   7e-91
Sscrofa_ChrX                                                          135   9e-29

>gb|GL896183.1| Sus scrofa unplaced genomic scaffold chrU_scaffold549
          Length = 126171

 Score =  874 bits (441), Expect = 0.0
 Identities = 793/913 (86%)
 Strand = Plus / Plus

                                                                         
Query: 532   ggaggccttcgtgcagtttgcttcacaggaaatagctgaaaaggctctaaagaaacacaa 591
             ||||||||| |||||||||||||||||||| ||||| ||||||||  |||||||||||||
Sbjct: 87259 ggaggcctttgtgcagtttgcttcacaggagatagcagaaaaggccttaaagaaacacaa 87318

                                                                         
Query: 592   ggaaagaatagggcacaggtatatcgaaatctttaagagcagtcgtgctgaagttagaac 651
             ||||||||||||||||||||| || |||||||| ||||| || || ||||||||  ||||
Sbjct: 87319 ggaaagaatagggcacaggtacattgaaatcttcaagagtagccgagctgaagtccgaac 87378

                                                                         
Query: 652   tcactatgatcctccacgaaaacttatggccatgcagcgaccaggtccctatgacagacc 711
              ||||| || || || ||||| |||||||| |||||||||||||| |||||||| || ||
Sbjct: 87379 ccactacgacccccctcgaaagcttatggctatgcagcgaccagggccctatgataggcc 87438

                                                                         
Query: 712   tggggctggcagagggtataacagcattggcaggggagctggctttgaaaggatgaggcg 771
              |||||||||||||| || || ||||||||||| || ||||| |||||||||||||||||
Sbjct: 87439 aggggctggcagaggatacaatagcattggcagaggggctgggtttgaaaggatgaggcg 87498

                                                                         
Query: 772   tggtgcttatggtggaggctatggaggctatgatgattataatggctataatgatggcta 831
              ||||| ||||||||||| ||||||||||||||||| |||  ||||||||||||||| ||
Sbjct: 87499 gggtgcctatggtggagggtatggaggctatgatgactatggtggctataatgatgggta 87558

                                                                         
Query: 832   tggatttggatcagatagatttggaagagacctcaattactgtttttcaggaatgtcaga 891
             ||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 87559 tggctttgggtctgatagatttggaagagacctcaattactgtttttcaggaatgtctga 87618

                                                                         
Query: 892   tcacagatacggggatggtggctctactttccagagcacaacaggacactgtgtacacat 951
             ||| |||||||| |||||||| || | ||| |||||||| || || |||||||| |||||
Sbjct: 87619 tcatagatacggagatggtgggtccagttttcagagcaccacggggcactgtgtccacat 87678

                                                                         
Query: 952   gcggggattaccttacagagctactgagaatgacatttataannnnnnnncaccactcaa 1011
             | ||||||||||||||||||| ||||| ||||| ||||| ||        |||| |||||
Sbjct: 87679 gaggggattaccttacagagccactgaaaatgatatttacaattttttctcacctctcaa 87738

                                                                         
Query: 1012  ccctgtgagagtacatattgaaattggtcctgatggcagagtaactggtgaagcagatgt 1071
             |||  |||||||||| |||||||| || || |||||| |||| |||||||| ||||||||
Sbjct: 87739 ccccatgagagtacacattgaaatcggacccgatggccgagttactggtgaggcagatgt 87798

                                                                         
Query: 1072  ggagtttgcaactcatgaagatgcagtggcagctatgtcaaaagacaaagcaaatatgca 1131
              || ||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct: 87799 tgaatttgctactcatgaagatgccgtggcagctatggcaaaagacaaagctaatatgca 87858

                                                                         
Query: 1132  acacagatatgtagaactcttcttgaattctacagcaggagcaagcggtggtgcttacga 1191
             ||||||||| || || ||||||||||||||||| |||||  |||| || || ||||| ||
Sbjct: 87859 acacagatacgtggagctcttcttgaattctaccgcaggcacaagtgggggcgcttatga 87918

                                                                         
Query: 1192  acacagatatgtagaactcttcttgaattctacagcaggagcaagcggtggtgcttatgg 1251
              ||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| || ||
Sbjct: 87919 tcacagctatgtagaactctttttgaattctacagcaggggcaagtggtggtgcctacgg 87978

                                                                         
Query: 1252  tagccaaatgatgggaggcatgggcttgtcaaaccagtccagttatggtggcccagctag 1311
             |||||||||||||||||| |||||| | || |||||||| ||||| || || || |||||
Sbjct: 87979 tagccaaatgatgggagggatgggcatatccaaccagtctagttacggaggtcctgctag 88038

                                                                         
Query: 1312  ccagcagctgagtggtggttatggaggcggttatggtggccagagcagcatgagtggata 1371
             ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 88039 ccagcagctgagtggtggttatggaggcggttatggtggtcagagcagtatgaggggata 88098

                                                                         
Query: 1372  tgaccaagttttacaggaaaactccagtgattttcaatcaaacattgcataggcagccaa 1431
             |||||||||| | ||||||||||||||||| | |||||||||| | || |||||||  ||
Sbjct: 88099 tgaccaagttctgcaggaaaactccagtgactatcaatcaaacctcgcttaggcagagaa 88158

                          
Query: 1432  ggagcagtgaaca 1444
             | |||| ||||||
Sbjct: 88159 gaagcactgaaca 88171



 Score =  422 bits (213), Expect = e-115
 Identities = 368/422 (87%)
 Strand = Plus / Plus

                                                                         
Query: 74    atgatgttgggcaccgaaggcggagagggattcgtggtgaaggtccggggcttgccctgg 133
             |||||| || |||| |||||| | ||||| ||||||||||||||| ||||| | ||||||
Sbjct: 86736 atgatgctgagcacagaaggcagggaggggttcgtggtgaaggtcaggggcctaccctgg 86795

                                                                         
Query: 134   tcctgctcggcggacgaagtgcagcggnnnnnnnctgactgcaaaattcaaaatggggct 193
             || ||||| || || ||||||  |||        |||| |||||||| ||||||||  | 
Sbjct: 86796 tcgtgctcagctgatgaagtgatgcgtttcttctctgattgcaaaatccaaaatggcaca 86855

                                                                         
Query: 194   caaggtattcgtttcatctacaccagagaaggcagaccgagtggcgaggcttttgttgaa 253
               |||||||||||||||||||||||||||||| ||||| |||||||| || ||||| |||
Sbjct: 86856 tcaggtattcgtttcatctacaccagagaagggagaccaagtggcgaagcatttgtcgaa 86915

                                                                         
Query: 254   cttgaatcagaagatgaagtcaaattggccctgaaaaaagacagagaaactatgggacac 313
             |||||||| ||||||||||| ||||||||  |||| |||||||||||||| |||||||||
Sbjct: 86916 cttgaatccgaagatgaagtgaaattggctttgaagaaagacagagaaaccatgggacac 86975

                                                                         
Query: 314   agatatgttgaagtattcaagtcaaacaacgttgaaatggattgggtgttgaagcatact 373
             ||||| ||||||||||||||||| ||||  ||||||||||||||||||||||||||||| 
Sbjct: 86976 agatacgttgaagtattcaagtccaacagtgttgaaatggattgggtgttgaagcataca 87035

                                                                         
Query: 374   ggtccaaatagtcctgacacggccaatgatggctttgtacggcttagaggactccccttt 433
             |||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||
Sbjct: 87036 ggtccaaatagtcctgacactgccaatgatggcttcgtccggcttagaggactcccattt 87095

                                                                         
Query: 434   ggatgtagcaaggaagaaattgttcagttcttctcagggttggaaatcgtgccaaatggg 493
             || |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 87096 ggctgtagcaaggaagagattgttcagttcttttcagggttggaaattgtgccaaatggg 87155

               
Query: 494   at 495
             ||
Sbjct: 87156 at 87157



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                      
Query: 1598  tttaacagttttgcaatacaagcttgtgatttatgcttact 1638
             ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 88363 tttaacagttttgcattacaggcttgtgatttatgcttact 88403


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  416 bits (210), Expect = e-113
 Identities = 217/218 (99%), Gaps = 1/218 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1422     aggcagccaaggagcagtgaacagcagctactacagtagtggaagccgagcatctatggg 1481
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80537651 aggcagccaaggagcagtgaacagcagctactacagtagtggaagccgagcatctatggg 80537710

                                                                            
Query: 1482     agtgaacggaatgggagggatgtctagcatgtccagtatgagtggtggatggggaatgta 1541
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80537711 agtgaacggaatgggagggatgtctagcatgtccagtatgagtggtggatggggaatgta 80537770

                                                                            
Query: 1542     attggtcctgatcactgactcttagtcgacatttttaaaaag-aaaacaacttaagtttt 1600
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80537771 attggtcctgatcactgactcttagtcgacatttttaaaaagaaaaacaacttaagtttt 80537830

                                                      
Query: 1601     aacagttttgcaatacaagcttgtgatttatgcttact 1638
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 80537831 aacagttttgcaatacaagcttgtgatttatgcttact 80537868



 Score =  361 bits (182), Expect = 8e-97
 Identities = 182/182 (100%)
 Strand = Plus / Plus

                                                                            
Query: 608      aggtatatcgaaatctttaagagcagtcgtgctgaagttagaactcactatgatcctcca 667
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80534075 aggtatatcgaaatctttaagagcagtcgtgctgaagttagaactcactatgatcctcca 80534134

                                                                            
Query: 668      cgaaaacttatggccatgcagcgaccaggtccctatgacagacctggggctggcagaggg 727
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80534135 cgaaaacttatggccatgcagcgaccaggtccctatgacagacctggggctggcagaggg 80534194

                                                                            
Query: 728      tataacagcattggcaggggagctggctttgaaaggatgaggcgtggtgcttatggtgga 787
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80534195 tataacagcattggcaggggagctggctttgaaaggatgaggcgtggtgcttatggtgga 80534254

                  
Query: 788      gg 789
                ||
Sbjct: 80534255 gg 80534256



 Score =  311 bits (157), Expect = 7e-82
 Identities = 157/157 (100%)
 Strand = Plus / Plus

                                                                            
Query: 170      gactgcaaaattcaaaatggggctcaaggtattcgtttcatctacaccagagaaggcaga 229
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80530966 gactgcaaaattcaaaatggggctcaaggtattcgtttcatctacaccagagaaggcaga 80531025

                                                                            
Query: 230      ccgagtggcgaggcttttgttgaacttgaatcagaagatgaagtcaaattggccctgaaa 289
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80531026 ccgagtggcgaggcttttgttgaacttgaatcagaagatgaagtcaaattggccctgaaa 80531085

                                                     
Query: 290      aaagacagagaaactatgggacacagatatgttgaag 326
                |||||||||||||||||||||||||||||||||||||
Sbjct: 80531086 aaagacagagaaactatgggacacagatatgttgaag 80531122



 Score =  291 bits (147), Expect = 6e-76
 Identities = 147/147 (100%)
 Strand = Plus / Plus

                                                                            
Query: 325      agtattcaagtcaaacaacgttgaaatggattgggtgttgaagcatactggtccaaatag 384
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80531330 agtattcaagtcaaacaacgttgaaatggattgggtgttgaagcatactggtccaaatag 80531389

                                                                            
Query: 385      tcctgacacggccaatgatggctttgtacggcttagaggactcccctttggatgtagcaa 444
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80531390 tcctgacacggccaatgatggctttgtacggcttagaggactcccctttggatgtagcaa 80531449

                                           
Query: 445      ggaagaaattgttcagttcttctcagg 471
                |||||||||||||||||||||||||||
Sbjct: 80531450 ggaagaaattgttcagttcttctcagg 80531476



 Score =  283 bits (143), Expect = 1e-73
 Identities = 143/143 (100%)
 Strand = Plus / Plus

                                                                            
Query: 469      agggttggaaatcgtgccaaatgggataacattgccggtggacttccaggggaggagtac 528
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80532987 agggttggaaatcgtgccaaatgggataacattgccggtggacttccaggggaggagtac 80533046

                                                                            
Query: 529      gggggaggccttcgtgcagtttgcttcacaggaaatagctgaaaaggctctaaagaaaca 588
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80533047 gggggaggccttcgtgcagtttgcttcacaggaaatagctgaaaaggctctaaagaaaca 80533106

                                       
Query: 589      caaggaaagaatagggcacaggt 611
                |||||||||||||||||||||||
Sbjct: 80533107 caaggaaagaatagggcacaggt 80533129



 Score =  268 bits (135), Expect = 9e-69
 Identities = 135/135 (100%)
 Strand = Plus / Plus

                                                                            
Query: 859      agacctcaattactgtttttcaggaatgtcagatcacagatacggggatggtggctctac 918
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80534468 agacctcaattactgtttttcaggaatgtcagatcacagatacggggatggtggctctac 80534527

                                                                            
Query: 919      tttccagagcacaacaggacactgtgtacacatgcggggattaccttacagagctactga 978
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80534528 tttccagagcacaacaggacactgtgtacacatgcggggattaccttacagagctactga 80534587

                               
Query: 979      gaatgacatttataa 993
                |||||||||||||||
Sbjct: 80534588 gaatgacatttataa 80534602



 Score =  256 bits (129), Expect = 3e-65
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1002     caccactcaaccctgtgagagtacatattgaaattggtcctgatggcagagtaactggtg 1061
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80534750 caccactcaaccctgtgagagtacatattgaaattggtcctgatggcagagtaactggtg 80534809

                                                                            
Query: 1062     aagcagatgtggagtttgcaactcatgaagatgcagtggcagctatgtcaaaagacaaag 1121
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80534810 aagcagatgtggagtttgcaactcatgaagatgcagtggcagctatgtcaaaagacaaag 80534869

                         
Query: 1122     caaatatgc 1130
                |||||||||
Sbjct: 80534870 caaatatgc 80534878



 Score =  240 bits (121), Expect = 2e-60
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                            
Query: 40       agtctttttcgacgcccgaacgcactaagagacgatgatgttgggcaccgaaggcggaga 99
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80529534 agtctttttcgacgcccgaacgcactaagagacgatgatgttgggcaccgaaggcggaga 80529593

                                                                            
Query: 100      gggattcgtggtgaaggtccggggcttgccctggtcctgctcggcggacgaagtgcagcg 159
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80529594 gggattcgtggtgaaggtccggggcttgccctggtcctgctcggcggacgaagtgcagcg 80529653

                 
Query: 160      g 160
                |
Sbjct: 80529654 g 80529654



 Score =  184 bits (93), Expect = 1e-43
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1281     caaaccagtccagttatggtggcccagctagccagcagctgagtggtggttatggaggcg 1340
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80536431 caaaccagtccagttatggtggcccagctagccagcagctgagtggtggttatggaggcg 80536490

                                                 
Query: 1341     gttatggtggccagagcagcatgagtggatatg 1373
                |||||||||||||||||||||||||||||||||
Sbjct: 80536491 gttatggtggccagagcagcatgagtggatatg 80536523



 Score =  180 bits (91), Expect = 2e-42
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1190     gaacacagatatgtagaactcttcttgaattctacagcaggagcaagcggtggtgcttat 1249
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80535672 gaacacagatatgtagaactcttcttgaattctacagcaggagcaagcggtggtgcttat 80535731

                                               
Query: 1250     ggtagccaaatgatgggaggcatgggcttgt 1280
                |||||||||||||||||||||||||||||||
Sbjct: 80535732 ggtagccaaatgatgggaggcatgggcttgt 80535762



 Score =  149 bits (75), Expect = 6e-33
 Identities = 87/91 (95%)
 Strand = Plus / Plus

                                                                            
Query: 1190     gaacacagatatgtagaactcttcttgaattctacagcaggagcaagcggtggtgcttat 1249
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 80535520 gaacacagatatgtagaactcttcttgaattctacagcaggagcaagcggtggtgcttac 80535579

                                               
Query: 1250     ggtagccaaatgatgggaggcatgggcttgt 1280
                |||||||||||| | ||||||||||| ||||
Sbjct: 80535580 ggtagccaaatgctaggaggcatgggtttgt 80535610



 Score =  147 bits (74), Expect = 2e-32
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                            
Query: 787      aggctatggaggctatgatgattataatggctataatgatggctatggatttggatcaga 846
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80534340 aggctatggaggctatgatgattataatggctataatgatggctatggatttggatcaga 80534399

                              
Query: 847      tagatttggaagag 860
                ||||||||||||||
Sbjct: 80534400 tagatttggaagag 80534413



 Score =  119 bits (60), Expect = 5e-24
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1131     aacacagatatgtagaactcttcttgaattctacagcaggagcaagcggtggtgcttacg 1190
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80535521 aacacagatatgtagaactcttcttgaattctacagcaggagcaagcggtggtgcttacg 80535580



 Score =  115 bits (58), Expect = 8e-23
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                          
Query: 1131     aacacagatatgtagaactcttcttgaattctacagcaggagcaagcggtggtgctta 1188
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80535673 aacacagatatgtagaactcttcttgaattctacagcaggagcaagcggtggtgctta 80535730



 Score =  103 bits (52), Expect = 3e-19
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                                    
Query: 1373     gaccaagttttacaggaaaactccagtgattttcaatcaaacattgcatagg 1424
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80537013 gaccaagttttacaggaaaactccagtgattttcaatcaaacattgcatagg 80537064



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                               
Query: 11       cttctcagccacgccgaagttgttcgtgtag 41
                |||||||||||||||||||||||||||||||
Sbjct: 80529013 cttctcagccacgccgaagttgttcgtgtag 80529043


>Sscrofa_Chr14 
||          Length = 153851969

 Score =  341 bits (172), Expect = 7e-91
 Identities = 358/420 (85%)
 Strand = Plus / Minus

                                                                            
Query: 196      aggtattcgtttcatctacaccagagaaggcagaccgagtggcgaggcttttgttgaact 255
                |||| ||| ||| |||||||| ||||||||||| | |||||| |||||||||||||||||
Sbjct: 66480103 aggtgttcattttatctacactagagaaggcaggcagagtggtgaggcttttgttgaact 66480044

                                                                            
Query: 256      tgaatcagaagatgaagtcaaattggccctgaaaaaagacagagaaactatgggacacag 315
                ||||||||||||||| || ||| ||||||| ||||||||||| ||||  ||||||||| |
Sbjct: 66480043 tgaatcagaagatgatgtaaaaatggcccttaaaaaagacagggaaagcatgggacaccg 66479984

                                                                            
Query: 316      atatgttgaagtattcaagtcaaacaacgttgaaatggattgggtgttgaagcatactgg 375
                 ||  |||| || ||||||||  |||     || |||||||||||||||||||| | |||
Sbjct: 66479983 gtacattgaggtgttcaagtcccacagaaccgagatggattgggtgttgaagcacagtgg 66479924

                                                                            
Query: 376      tccaaatagtcctgacacggccaatgatggctttgtacggcttagaggactcccctttgg 435
                |||||||||| | ||||| ||||||||||| || || |||||| |||||||||| |||||
Sbjct: 66479923 tccaaatagtgcagacactgccaatgatggtttcgtgcggcttcgaggactcccatttgg 66479864

                                                                            
Query: 436      atgtagcaaggaagaaattgttcagttcttctcagggttggaaatcgtgccaaatgggat 495
                ||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 66479863 atgcaccaaggaagaaatcgttcagttcttctcagggttggaaatcgtgccaaatgggat 66479804

                                                                            
Query: 496      aacattgccggtggacttccaggggaggagtacgggggaggccttcgtgcagtttgcttc 555
                 ||| |||| ||||||  | |||| | || ||| ||||| ||||| ||||||||||| ||
Sbjct: 66479803 cacactgcctgtggaccccgagggcaagattacaggggaagcctttgtgcagtttgcctc 66479744

                                                                            
Query: 556      acaggaaatagctgaaaaggctctaaagaaacacaaggaaagaatagggcacaggtatat 615
                ||||||  ||||||| ||||| |||  ||| |||||||| ||||||||||||||||||||
Sbjct: 66479743 acaggagttagctgagaaggcgctagggaagcacaaggagagaatagggcacaggtatat 66479684



 Score =  180 bits (91), Expect = 2e-42
 Identities = 130/143 (90%)
 Strand = Plus / Minus

                                                                            
Query: 469      agggttggaaatcgtgccaaatgggataacattgccggtggacttccaggggaggagtac 528
                |||||||||||||||||||||||||||||||||| || |||||| ||||||||| || ||
Sbjct: 77542029 agggttggaaatcgtgccaaatgggataacattgacgatggactaccaggggagaagcac 77541970

                                                                            
Query: 529      gggggaggccttcgtgcagtttgcttcacaggaaatagctgaaaaggctctaaagaaaca 588
                 ||||||||||||||||||||||||||| |||| ||||| ||||| |||||   ||||||
Sbjct: 77541969 aggggaggccttcgtgcagtttgcttcaaaggagatagcagaaaatgctctggggaaaca 77541910

                                       
Query: 589      caaggaaagaatagggcacaggt 611
                |||||||||||||||||||||||
Sbjct: 77541909 caaggaaagaatagggcacaggt 77541887



 Score =  137 bits (69), Expect = 2e-29
 Identities = 256/321 (79%)
 Strand = Plus / Minus

                                                                            
Query: 850      atttggaagagacctcaattactgtttttcaggaatgtcagatcacagatacggggatgg 909
                ||||||||||||||||| ||| ||| | || || ||||  || ||||| || || |||||
Sbjct: 66479449 atttggaagagacctcagttattgtctctctgggatgtatgaccacaggtatggagatgg 66479390

                                                                            
Query: 910      tggctctactttccagagcacaacaggacactgtgtacacatgcggggattaccttacag 969
                 |  | |||| |||||||||| || ||||||||||| |||||| ||||  | || |||| 
Sbjct: 66479389 cgagtttactgtccagagcaccactggacactgtgtccacatgagggggctgccatacaa 66479330

                                                                            
Query: 970      agctactgagaatgacatttataannnnnnnncaccactcaaccctgtgagagtacatat 1029
                ||| |||||||| |||||||| ||        | ||||||||||| |||||||| |||||
Sbjct: 66479329 agccactgagaacgacatttacaacttcttctctccactcaaccccgtgagagtccatat 66479270

                                                                            
Query: 1030     tgaaattggtcctgatggcagagtaactggtgaagcagatgtggagtttgcaactcatga 1089
                ||| ||||| |||||||| ||||| || || ||||| ||||| |||||||| || || ||
Sbjct: 66479269 tgagattggccctgatggaagagtgacgggcgaagctgatgttgagtttgccacccacga 66479210

                                                                            
Query: 1090     agatgcagtggcagctatgtcaaaagacaaagcaaatatgcaacacagatatgtagaact 1149
                 || || |||||||| ||||| |||||||  || || ||||||||||||||  |||||||
Sbjct: 66479209 tgaagctgtggcagccatgtccaaagacagggccaacatgcaacacagatacatagaact 66479150

                                     
Query: 1150     cttcttgaattctacagcagg 1170
                 ||||||||||| ||| ||||
Sbjct: 66479149 tttcttgaattccacaacagg 66479129



 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 136/167 (81%)
 Strand = Plus / Minus

                                                                             
Query: 1004      ccactcaaccctgtgagagtacatattgaaattggtcctgatggcagagtaactggtgaa 1063
                 ||||||||| | |||||||| |||||||| | ||| |||||||| ||||| || || |||
Sbjct: 119945201 ccactcaactccgtgagagtccatattgagactggccctgatggaagagtgacgggcgaa 119945142

                                                                             
Query: 1064      gcagatgtggagtttgcaactcatgaagatgcagtggcagctatgtcaaaagacaaagca 1123
                 || ||||| |||||||| || || || || || |||||||| ||||| |||||||  || 
Sbjct: 119945141 gctgatgtagagtttgccacccacgatgaagctgtggcagccatgtccaaagacagggcc 119945082

                                                                
Query: 1124      aatatgcaacacagatatgtagaactcttcttgaattctacagcagg 1170
                 || | ||||||||||||  ||||||| ||||||| ||| ||| ||||
Sbjct: 119945081 aacacgcaacacagatacatagaacttttcttgagttccacaacagg 119945035



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                            
Query: 1020     gagtacatattgaaattggtcctgatggcagagtaactggtgaagcagatgtggagtttg 1079
                |||| |||||||| |||||  | |||||||||| ||| || ||||||||||| |||||||
Sbjct: 77556530 gagtgcatattgatattggagcagatggcagagcaacaggagaagcagatgtagagtttg 77556589

                                   
Query: 1080     caactcatgaagatgcagt 1098
                  || ||||||||||||||
Sbjct: 77556590 tgacacatgaagatgcagt 77556608


>Sscrofa_ChrX 
||          Length = 144288218

 Score =  135 bits (68), Expect = 9e-29
 Identities = 296/372 (79%)
 Strand = Plus / Minus

                                                                            
Query: 244      ttttgttgaacttgaatcagaagatgaagtcaaattggccctgaaaaaagacagagaaac 303
                |||||||||||||| |||||||||||| || ||| ||||||| |||||||| || | || 
Sbjct: 97195163 ttttgttgaacttggatcagaagatgatgtaaaaatggcccttaaaaaagagaggggaag 97195104

                                                                            
Query: 304      tatgggacacagatatgttgaagtattcaagtcaaacaacgttgaaatggattgggtgtt 363
                 |||||||||   ||    || || ||||||||  |||    ||| ||||||||| ||||
Sbjct: 97195103 catgggacaccagtacacggaggtgttcaagtcccacagaactgagatggattggatgtt 97195044

                                                                            
Query: 364      gaagcatactggtccaaatagtcctgacacggccaatgatggctttgtacggcttagagg 423
                |||||| | | ||||||| ||| | ||||  ||||||||||| |||||  |||||  |||
Sbjct: 97195043 gaagcacagttgtccaaagagtgcagacaatgccaatgatggttttgtgtggcttcaagg 97194984

                                                                            
Query: 424      actcccctttggatgtagcaaggaagaaattgttcagttcttctcagggttggaaatcgt 483
                |||||  |||||||| | ||||||| ||||  |||||||||||||||||||||||||| |
Sbjct: 97194983 actcctatttggatgcaccaaggaaaaaatcattcagttcttctcagggttggaaatcat 97194924

                                                                            
Query: 484      gccaaatgggataacattgccggtggacttccaggggaggagtacgggggaggccttcgt 543
                ||||| | |||| ||||||||  ||||  |  |||| | || ||| ||||| ||||| ||
Sbjct: 97194923 gccaatttggatcacattgcctatggatctagagggcaagattacaggggaagcctttgt 97194864

                                                                            
Query: 544      gcagtttgcttcacaggaaatagctgaaaaggctctaaagaaacacaaggaaagaatagg 603
                ||||||| | || |||||  ||||||| || ||||||  | | | |||||| ||||||||
Sbjct: 97194863 gcagtttacctctcaggagttagctgagaaagctctaggggaccgcaaggagagaatagg 97194804

                            
Query: 604      gcacaggtatat 615
                ||||||||||||
Sbjct: 97194803 gcacaggtatat 97194792


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,216,506
Number of extensions: 464
Number of successful extensions: 464
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 28
Length of query: 1638
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1616
Effective length of database: 2,808,408,574
Effective search space: 4538388255584
Effective search space used: 4538388255584
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)