Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007839
(1581 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098797.1| insulin-like growth factor-binding protein 5... 530 e-150
Alignment gi|NP_776981.1| insulin-like growth factor-binding protein 3 pr... 229 5e-60
Alignment gi|NP_776982.1| insulin-like growth factor-binding protein 4 pr... 177 3e-44
Alignment gi|NP_776980.1| insulin-like growth factor-binding protein 2 pr... 149 9e-36
Alignment gi|NP_776979.2| insulin-like growth factor-binding protein 1 pr... 133 4e-31
Alignment gi|NP_001035585.1| insulin-like growth factor-binding protein 6... 128 1e-29
Alignment gi|NP_001068968.1| testican-1 [Bos taurus]. 51 3e-06
Alignment gi|NP_001095770.1| insulin-like growth factor-binding protein 7... 50 7e-06
Alignment gi|NP_001094585.1| testican-2 [Bos taurus]. 49 1e-05
>ref|NP_001098797.1| insulin-like growth factor-binding protein 5 precursor [Bos taurus].
Length = 271
Score = 530 bits (1365), Expect = e-150
Identities = 248/250 (99%), Positives = 250/250 (100%)
Frame = +1
Query: 592 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP 771
SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP
Sbjct: 22 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP 81
Query: 772 RQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHT 951
RQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHT
Sbjct: 82 RQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHT 141
Query: 952 RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQE 1131
RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQ+SEQGPCRRHMEASLQE
Sbjct: 142 RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQKSEQGPCRRHMEASLQE 201
Query: 1132 LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ 1311
LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ
Sbjct: 202 LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ 261
Query: 1312 CHSFDSSNVE 1341
CH+FDSSNVE
Sbjct: 262 CHTFDSSNVE 271
>ref|NP_776981.1| insulin-like growth factor-binding protein 3 precursor [Bos taurus].
Length = 291
Score = 229 bits (584), Expect = 5e-60
Identities = 116/260 (44%), Positives = 149/260 (57%), Gaps = 16/260 (6%)
Frame = +1
Query: 598 VHCEPCDEKALSMC---PPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCL 768
V CEPCD +A++ C PPSP ELV+EPGCGCC+TCAL EGQ CGVYTERC GLRC
Sbjct: 38 VRCEPCDARAVAQCAPPPPSPPCAELVREPGCGCCLTCALREGQPCGVYTERCGSGLRCQ 97
Query: 769 PRQDEEKPLHALLHGRGVCLNEKSYREQA-----KIERDSREHEEPTTSEMAEETYSPKI 933
P + +PL ALL GRG+C N + + E EE + E P
Sbjct: 98 PPPGDPRPLQALLDGRGLCANASAVGRLRPYLLPSASGNGSESEEDHSMGSTENQAGPST 157
Query: 934 -------FRPKHTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQ 1092
F P HT++ +K K +R K+ +N + E ++E+E
Sbjct: 158 HRVPVSKFHPIHTKMDVIKKGHAKDSQRYKVDYESQSTDTQNFSS-------ESKRETEY 210
Query: 1093 GPCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGM 1272
GPCRR ME +L LK + PR +++PNCD+KGFYK+KQC+PS+GRKRG CWCVDKYG
Sbjct: 211 GPCRREMEDTLNHLKFLNMLSPRGIHIPNCDKKGFYKKKQCRPSKGRKRGFCWCVDKYGQ 270
Query: 1273 KLPGMEYV-DGDFQCHSFDS 1329
LPG + GD C+S +S
Sbjct: 271 PLPGFDVKGKGDVHCYSMES 290
>ref|NP_776982.1| insulin-like growth factor-binding protein 4 precursor [Bos taurus].
Length = 258
Score = 177 bits (448), Expect = 3e-44
Identities = 101/252 (40%), Positives = 133/252 (52%), Gaps = 7/252 (2%)
Frame = +1
Query: 598 VHCEPCDEKALSMCPPSPLGCE-LVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPR 774
+HC PC E+ L+ C P P+GCE LV+EPGCGCC TCAL +G CGVYT RC GLRC P
Sbjct: 25 IHCPPCSEEKLARCRP-PVGCEELVREPGCGCCATCALGKGMPCGVYTPRCGSGLRCYPP 83
Query: 775 QDEEKPLHALLHGRGVCLNEKSYREQAKIE--RDSREHEEPTTSEMAEETYSPKIFRPKH 948
+ EKPLH L+HG+GVC+ E A+IE ++S + + + ++SP H
Sbjct: 84 RGVEKPLHTLVHGQGVCM------ELAEIEAIQESLQPSDKDEGDHPNNSFSP---CSAH 134
Query: 949 TRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQ 1128
R K A +DR + K +G A P QG C+ + +L+
Sbjct: 135 DRKCLQKHLAKIRDRSTSGGKMKVIGAPREEARP-----------VPQGSCQSELHRALE 183
Query: 1129 ELKASPRMVPRAVY---LPNCDRKGFYKRKQCKPSRGRKRGICWCVD-KYGMKLPGMEYV 1296
L AS +Y +PNCDR G + KQC P+ +RG CWCVD K G+KLPG
Sbjct: 184 RLAASQSRTHEDLYIIPIPNCDRNGNFHPKQCHPALDGQRGKCWCVDRKTGVKLPGGLEP 243
Query: 1297 DGDFQCHSFDSS 1332
G+ CH S
Sbjct: 244 KGELDCHQLADS 255
>ref|NP_776980.1| insulin-like growth factor-binding protein 2 precursor [Bos taurus].
Length = 317
Score = 149 bits (375), Expect = 9e-36
Identities = 86/269 (31%), Positives = 125/269 (46%), Gaps = 29/269 (10%)
Frame = +1
Query: 604 CEPCDEKALSMCPPSP-----------LGCELVKEPGCGCCMTCALAEGQSCGVYTERCA 750
C PC ++L+ C P P + CELV+EPGCGCC CA EG+ CGVYT RC
Sbjct: 39 CPPCTPESLAACKPPPGAAAGPAGDARVPCELVREPGCGCCSVCARLEGERCGVYTPRCG 98
Query: 751 QGLRCLPRQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPK 930
QGLRC P E PL AL+HG G C A E+ + EE + + E
Sbjct: 99 QGLRCYPNPGSELPLRALVHGEGTCEKHGDAEYSASPEQVADNGEEHSEGGLVENHVDGN 158
Query: 931 I----------FRPKHTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQ 1080
+ +P + + EL R+K+T+ G H + ++R
Sbjct: 159 VNLMGGGGGAGRKPLKSGMKELAV------FREKVTEQHRQMGKGGKHHLGLEEPKKLRP 212
Query: 1081 ESEQGPCRRHMEASLQEL-------KASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKR 1239
+ PC++ ++ L+ + + P ++++PNCD+ G Y KQCK S +R
Sbjct: 213 PPARTPCQQELDQVLERISTMRLPDERGPLEHLYSLHIPNCDKHGLYNLKQCKMSLNGQR 272
Query: 1240 GICWCVD-KYGMKLPGMEYVDGDFQCHSF 1323
G CWCV+ G + G + GD +CH F
Sbjct: 273 GECWCVNPNTGKLIQGAPTIRGDPECHLF 301
>ref|NP_776979.2| insulin-like growth factor-binding protein 1 precursor [Bos taurus].
Length = 263
Score = 133 bits (335), Expect = 4e-31
Identities = 81/247 (32%), Positives = 117/247 (47%), Gaps = 7/247 (2%)
Frame = +1
Query: 604 CEPCDEKALSMCPPSPLGC-ELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPRQD 780
C PC + +++CPP P C EL + GCGCC CAL G +CGV T RCA+GL C
Sbjct: 32 CAPCSAERMALCPPVPASCPELTRSAGCGCCPMCALPLGAACGVATARCARGLSCRALPG 91
Query: 781 EEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHTRIS 960
E +PLHAL G+G C+ S + S E+ P +SE+ +E
Sbjct: 92 EPRPLHALTRGQGACMTTPSDEATDTKDTTSPENVSPESSEITQEQLLDNF--------- 142
Query: 961 ELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQEL-- 1134
L AE+ + N R + ++++ E PC+R + L L
Sbjct: 143 HLMAESSED-------LPILWNAISNYESLRALEISDVKKWKE--PCQRELYKVLDRLAR 193
Query: 1135 ---KASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKY-GMKLPGMEYVDG 1302
KA ++ YLPNC++ GFY KQC+ S + G+CWCV + G ++ G V G
Sbjct: 194 EQQKAGDKLYK--FYLPNCNKNGFYHSKQCETSLEGEPGLCWCVYPWSGKRILGSVAVRG 251
Query: 1303 DFQCHSF 1323
D +C +
Sbjct: 252 DPKCQQY 258
>ref|NP_001035585.1| insulin-like growth factor-binding protein 6 precursor [Bos taurus].
Length = 237
Score = 128 bits (322), Expect = 1e-29
Identities = 79/247 (31%), Positives = 116/247 (46%), Gaps = 6/247 (2%)
Frame = +1
Query: 592 SFVHCEPCDEKALSMCPPSPLGCELVKE-----PGCGCCMTCALAEGQSCGVYTERCAQG 756
+ C C + + CP GC ++ GC C EGQ CGVYT CA G
Sbjct: 23 ALARCPGCGQGVSAGCPG---GCAEEEDGGPAAEGCAEAGGCLRREGQQCGVYTPNCAPG 79
Query: 757 LRCLPRQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIF 936
L+C P + E+ PL ALL GRG C ++ P
Sbjct: 80 LQCQPPEKEDLPLRALLQGRGRCGRART----------------------------PSGE 111
Query: 937 RPKHTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHME 1116
PK ++ A + +RR + S +T R S Q++E GPCR+H++
Sbjct: 112 NPKESKPQAGTARSQDVNRRDQQRNS-----GTSTTPSRSNSGGV--QDTEMGPCRKHLD 164
Query: 1117 ASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPG-MEY 1293
+ LQ+L+ +Y+PNCD++GFY+++QC+ S+G++RG CWCV++ G LPG E
Sbjct: 165 SVLQQLQTEVFRGAHTLYVPNCDQRGFYRKRQCRSSQGQRRGPCWCVERMGQPLPGSSEG 224
Query: 1294 VDGDFQC 1314
DG C
Sbjct: 225 GDGSSLC 231
>ref|NP_001068968.1| testican-1 [Bos taurus].
Length = 442
Score = 51.2 bits (121), Expect = 3e-06
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +1
Query: 1096 PCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMK 1275
PC+ M +Q+L ++ ++P C+ +G+YK QC S G+ CWCVDKYG +
Sbjct: 315 PCQNEMNR-IQKLSKGKSLL--GAFIPRCNEEGYYKATQCHGSTGQ----CWCVDKYGNE 367
Query: 1276 LPG 1284
L G
Sbjct: 368 LAG 370
>ref|NP_001095770.1| insulin-like growth factor-binding protein 7 [Bos taurus].
Length = 282
Score = 49.7 bits (117), Expect = 7e-06
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Frame = +1
Query: 604 CEPCDEKALSMCPP-SPLGCELVK-EPGCGCCMTCALAEGQSC---GVYTERCAQGLRCL 768
C PC+ A CPP P GC+L + CGCC CA EG+ C G CA G+ C+
Sbjct: 32 CGPCEPAA---CPPLPPRGCQLGETRDACGCCPVCARGEGEPCGGGGAGRGHCAPGMECV 88
Query: 769 PRQDEEKPLHALLHG----RGVCLNEKSY 843
+ + G GVC+ + Y
Sbjct: 89 KSRKRRRGKAGAAAGGPVVSGVCVCKSRY 117
>ref|NP_001094585.1| testican-2 [Bos taurus].
Length = 424
Score = 49.3 bits (116), Expect = 1e-05
Identities = 22/66 (33%), Positives = 39/66 (59%)
Frame = +1
Query: 1087 EQGPCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKY 1266
E+ PC +E +++ + + P +++P+CD G+Y++ QC S G CWCVD+
Sbjct: 309 EKPPCLAELERI--QIQEAAKKKP-GIFIPSCDEDGYYRKMQCDQSSGD----CWCVDQL 361
Query: 1267 GMKLPG 1284
G++L G
Sbjct: 362 GLELTG 367
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,380,034
Number of extensions: 1881813
Number of successful extensions: 9275
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 9192
Number of HSP's successfully gapped: 10
Length of query: 527
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 420
Effective length of database: 14,140,958
Effective search space: 5939202360
Effective search space used: 5939202360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007839
(1581 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852885.1| PREDICTED: similar to insulin-like growth facto... 531 e-151
Alignment gi|XP_548740.2| PREDICTED: similar to Insulin-like growth facto... 218 1e-56
Alignment gi|XP_850184.1| PREDICTED: similar to Insulin-like growth facto... 173 5e-43
Alignment gi|XP_537927.2| PREDICTED: similar to insulin-like growth facto... 139 8e-33
Alignment gi|XP_849343.1| PREDICTED: similar to insulin-like growth facto... 139 1e-32
Alignment gi|XP_858473.1| PREDICTED: similar to insulin-like growth facto... 137 3e-32
Alignment gi|XP_545637.2| PREDICTED: similar to Insulin-like growth facto... 125 1e-28
Alignment gi|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPO... 51 3e-06
>ref|XP_852885.1| PREDICTED: similar to insulin-like growth factor binding protein 5
[Canis familiaris].
Length = 271
Score = 531 bits (1369), Expect = e-151
Identities = 249/250 (99%), Positives = 250/250 (100%)
Frame = +1
Query: 592 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP 771
SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP
Sbjct: 22 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP 81
Query: 772 RQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHT 951
RQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHT
Sbjct: 82 RQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHT 141
Query: 952 RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQE 1131
RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQE
Sbjct: 142 RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQE 201
Query: 1132 LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ 1311
LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ
Sbjct: 202 LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ 261
Query: 1312 CHSFDSSNVE 1341
CH+FDSSNVE
Sbjct: 262 CHTFDSSNVE 271
>ref|XP_548740.2| PREDICTED: similar to Insulin-like growth factor binding protein 3
precursor (IGFBP-3) (IBP-3) (IGF-binding protein 3)
[Canis familiaris].
Length = 563
Score = 218 bits (556), Expect = 1e-56
Identities = 115/260 (44%), Positives = 152/260 (58%), Gaps = 16/260 (6%)
Frame = +1
Query: 598 VHCEPCDEKALSMCPP---SPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCL 768
V C+PCD +AL+ C P +P ELV+EPGCGCC+TCAL EGQ CGVYTERC GL C
Sbjct: 310 VRCDPCDARALAQCAPPSAAPACPELVREPGCGCCLTCALREGQPCGVYTERCGAGLSCQ 369
Query: 769 PRQDEEKPLHALLHGRGVCLNEKSY-REQAKI------ERDSREHEEPTTSEMAE----- 912
P E +PL A+L GRG+C N + R +A + +S E EE + A+
Sbjct: 370 PPPGEPRPLQAMLDGRGLCANASAAGRLRAYLLPAPPAPGNSSESEEDHGAGGAQALPGT 429
Query: 913 ETYSPKIFRPKHTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQ 1092
+P HT++ +K K +R K+ +N + E ++E+E
Sbjct: 430 HRVPDAKLQPLHTKMDVIKKGHAKDSQRYKVDYESQSTDTQNFSS-------EYKRETEY 482
Query: 1093 GPCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGM 1272
GPCRR +E +L LK + PR +++PNCDRKGFYK+KQC+PS+GRKRG CWCVDKYG
Sbjct: 483 GPCRREVEDTLNRLKFLDMLSPRGIHIPNCDRKGFYKKKQCRPSKGRKRGFCWCVDKYGQ 542
Query: 1273 KLPGME-YVDGDFQCHSFDS 1329
LPG + GD C+S DS
Sbjct: 543 PLPGFDARGKGDIHCYSMDS 562
>ref|XP_850184.1| PREDICTED: similar to Insulin-like growth factor binding protein 4
precursor (IGFBP-4) (IBP-4) (IGF-binding protein 4)
[Canis familiaris].
Length = 451
Score = 173 bits (438), Expect = 5e-43
Identities = 107/299 (35%), Positives = 141/299 (47%), Gaps = 7/299 (2%)
Frame = +1
Query: 457 LPGPFLLALSISCPAPGKGGDSEKMVXXXXXXXXXXXXXXXXXXXSFVHCEPCDEKALSM 636
LP P S PAP S + +HC C E+ L+
Sbjct: 171 LPRPAPAPAPASAPAPAPRPSSVMLPLCLVAALLLAAGPGPSLGDEAIHCPSCSEEKLAR 230
Query: 637 CPPSPLGCE-LVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPRQDEEKPLHALLHG 813
C P P+GCE LV+EPGCGCC TCAL +G CGVYT RC GLRC P + EKPLH L+HG
Sbjct: 231 CRP-PVGCEELVREPGCGCCATCALGKGMPCGVYTPRCGSGLRCYPPRGVEKPLHTLMHG 289
Query: 814 RGVCLNEKSYREQAKIE--RDSREHEEPTTSEMAEETYSPKIFRPKHTRISELKAEAVKK 987
+GVC+ E ++IE ++S + + + ++SP H R K A +
Sbjct: 290 QGVCM------ELSEIEAIQESLQPSDKDEGDHPNNSFSP---CSAHDRRCLQKHFAKIR 340
Query: 988 DRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQELKASPRMVPRAV 1167
DR + K +G A P QG C+ + +L+ L AS +
Sbjct: 341 DRSTSGGKMKVIGVPREEARP-----------VPQGSCQSELHRALERLAASQSRTHEDL 389
Query: 1168 Y---LPNCDRKGFYKRKQCKPSRGRKRGICWCVD-KYGMKLPGMEYVDGDFQCHSFDSS 1332
Y +PNCDR G + KQC P+ +RG CWCVD K G+KLPG G+ CH S
Sbjct: 390 YIIPIPNCDRNGNFHPKQCHPALDGQRGKCWCVDRKTGVKLPGGLEPKGELDCHQLADS 448
>ref|XP_537927.2| PREDICTED: similar to insulin-like growth factor binding protein 1
[Canis familiaris].
Length = 249
Score = 139 bits (350), Expect = 8e-33
Identities = 87/249 (34%), Positives = 119/249 (47%), Gaps = 8/249 (3%)
Frame = +1
Query: 601 HCEPCDEKALSMCPPSPLGC-ELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPRQ 777
HC PC + L++CPP P C E GCGCC CAL + CGV T RCA GL C
Sbjct: 31 HCAPCTPEKLALCPPVPASCAETALPAGCGCCPMCALPQDAPCGVATARCATGLSCRAAP 90
Query: 778 DEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHTRI 957
EE+PLHAL+ GRGVC+ + A ++S E E T E E + + + T I
Sbjct: 91 GEERPLHALIRGRGVCVP----TDPAADAKESSESSE-ITQEQLLENFHLMVPSEEDTPI 145
Query: 958 ---SELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHME---A 1119
+ + V+ D KL + PCRR + A
Sbjct: 146 LWNAVRNYKTVRSDDSDKLKE----------------------------PCRRELHEVLA 177
Query: 1120 SLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKY-GMKLPGMEYV 1296
L E +AS ++ + YLPNC++ GFY +QCK + +RG+CWCV + G ++PG V
Sbjct: 178 RLAEEQASRQLY--SFYLPNCNKNGFYHSRQCKTAMDGQRGLCWCVYPWNGERIPGSVEV 235
Query: 1297 DGDFQCHSF 1323
GD C +
Sbjct: 236 RGDPNCGQY 244
>ref|XP_849343.1| PREDICTED: similar to insulin-like growth factor binding protein 6
isoform 2 [Canis familiaris].
Length = 240
Score = 139 bits (349), Expect = 1e-32
Identities = 80/243 (32%), Positives = 116/243 (47%), Gaps = 2/243 (0%)
Frame = +1
Query: 592 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMT--CALAEGQSCGVYTERCAQGLRC 765
+ C C + A + CP + + E P GC C EGQ CGVYT C GL+C
Sbjct: 24 ALARCPGCGQGAQAGCPGACVQEEDGGPPAEGCAEKRGCLRREGQLCGVYTPNCLPGLQC 83
Query: 766 LPRQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPK 945
P +++E PL ALL GRG C + + E P S+ T P+
Sbjct: 84 QPPEEDEAPLRALLLGRGRCRRARG---------PAPARENPKESKPQAGTTRPQ----- 129
Query: 946 HTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASL 1125
+ ++D+++ S G N P Q++E GPCRRH+++ L
Sbjct: 130 ---------DVNRRDQQRNPGASTTTSGRPN---------PGGVQDAEMGPCRRHLDSVL 171
Query: 1126 QELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGD 1305
Q+L+ +Y+PNCD KGFY+++QC+ S+G++RG CWCVD+ G L G DG
Sbjct: 172 QQLQTEVYRGVHTLYVPNCDHKGFYRKRQCRSSQGQRRGPCWCVDRMGQPLSGSPDGDGS 231
Query: 1306 FQC 1314
C
Sbjct: 232 SSC 234
>ref|XP_858473.1| PREDICTED: similar to insulin-like growth factor binding protein 6
isoform 3 [Canis familiaris].
Length = 238
Score = 137 bits (345), Expect = 3e-32
Identities = 80/243 (32%), Positives = 115/243 (47%), Gaps = 2/243 (0%)
Frame = +1
Query: 592 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMT--CALAEGQSCGVYTERCAQGLRC 765
+ C C + A + CP + + E P GC C EGQ CGVYT C GL+C
Sbjct: 24 ALARCPGCGQGAQAGCPGACVQEEDGGPPAEGCAEKRGCLRREGQLCGVYTPNCLPGLQC 83
Query: 766 LPRQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPK 945
P +++E PL ALL GRG C + E P S+ T P+
Sbjct: 84 QPPEEDEAPLRALLLGRGRCRRARG-----------PPGENPKESKPQAGTTRPQ----- 127
Query: 946 HTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASL 1125
+ ++D+++ S G N P Q++E GPCRRH+++ L
Sbjct: 128 ---------DVNRRDQQRNPGASTTTSGRPN---------PGGVQDAEMGPCRRHLDSVL 169
Query: 1126 QELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGD 1305
Q+L+ +Y+PNCD KGFY+++QC+ S+G++RG CWCVD+ G L G DG
Sbjct: 170 QQLQTEVYRGVHTLYVPNCDHKGFYRKRQCRSSQGQRRGPCWCVDRMGQPLSGSPDGDGS 229
Query: 1306 FQC 1314
C
Sbjct: 230 SSC 232
>ref|XP_545637.2| PREDICTED: similar to Insulin-like growth factor binding protein 2
precursor (IGFBP-2) (IBP-2) (IGF-binding protein 2)
[Canis familiaris].
Length = 271
Score = 125 bits (314), Expect = 1e-28
Identities = 74/240 (30%), Positives = 112/240 (46%), Gaps = 18/240 (7%)
Frame = +1
Query: 676 PGCGCCMTCALAEGQSCGVYTERCAQGLRCLPRQDEEKPLHALLHGRGVCLNEKSYREQA 855
PGCGCC CA EG++CGVYT RCAQGLRC P E PL AL+ G G C + A
Sbjct: 28 PGCGCCSVCARLEGEACGVYTPRCAQGLRCYPHPGSELPLQALVLGEGTCEKRRDAEYGA 87
Query: 856 KIERDSREHEEPTTSEMAEETYSPKI----------FRPKHTRISELKAEAVKKDRRKKL 1005
E+ + +E + + E + +P + + EL R+K+
Sbjct: 88 SPEQVADNGDEHSEGGLVENHVDGTVNLLGGGGGAGRKPLKSGMKELAV------FREKV 141
Query: 1006 TQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQEL-------KASPRMVPRA 1164
T+ G H + ++R + PC++ ++ L+ + + P +
Sbjct: 142 TEQHRQMGKGGKHHLGLDEPKKLRPPPARTPCQQELDQVLERISTMHLPDERGPLEHLYS 201
Query: 1165 VYLPNCDRKGFYKRKQCKPSRGRKRGICWCVD-KYGMKLPGMEYVDGDFQCHSFDSSNVE 1341
+++PNCD+ G Y KQCK S +RG CWCV+ G + G + GD +CH F + E
Sbjct: 202 LHIPNCDKHGLYNLKQCKMSLNGQRGECWCVNPNTGKLIQGAPTIRGDPECHLFYNEQQE 261
>ref|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPOCK protein) [Canis
familiaris].
Length = 418
Score = 51.2 bits (121), Expect = 3e-06
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +1
Query: 1096 PCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMK 1275
PC+ M +Q+L ++ ++P C+ +G+YK QC S G+ CWCVDKYG +
Sbjct: 291 PCQNEMNR-IQKLSKGKSLL--GAFIPRCNEEGYYKATQCHGSTGQ----CWCVDKYGNE 343
Query: 1276 LPG 1284
L G
Sbjct: 344 LAG 346
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,020,768
Number of extensions: 1934688
Number of successful extensions: 9305
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9204
Number of HSP's successfully gapped: 9
Length of query: 527
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 420
Effective length of database: 15,307,552
Effective search space: 6429171840
Effective search space used: 6429171840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007839
(1581 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999264.1| insulin-like growth factor-binding protein 5 pr... 530 e-151
Alignment gi|XP_003360941.1| PREDICTED: insulin-like growth factor-bindin... 420 e-117
Alignment gi|NP_001005156.1| insulin-like growth factor-binding protein 3... 228 6e-60
Alignment gi|NP_001116601.1| insulin-like growth factor-binding protein 4... 177 1e-44
Alignment gi|NP_001182034.1| insulin-like growth factor-binding protein 1... 143 2e-34
Alignment gi|NP_999168.1| insulin-like growth factor-binding protein 2 pr... 139 4e-33
Alignment gi|NP_001093660.1| insulin-like growth factor-binding protein 6... 133 3e-31
Alignment gi|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa]. 52 7e-07
Alignment gi|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa]. 52 7e-07
Alignment gi|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa]. 52 7e-07
>ref|NP_999264.1| insulin-like growth factor-binding protein 5 precursor [Sus scrofa].
Length = 271
Score = 530 bits (1366), Expect = e-151
Identities = 249/250 (99%), Positives = 249/250 (99%)
Frame = +1
Query: 592 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP 771
SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP
Sbjct: 22 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP 81
Query: 772 RQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHT 951
RQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHT
Sbjct: 82 RQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHT 141
Query: 952 RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQE 1131
RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVI APEMRQESEQGPCRRHMEASLQE
Sbjct: 142 RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVILAPEMRQESEQGPCRRHMEASLQE 201
Query: 1132 LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ 1311
LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ
Sbjct: 202 LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ 261
Query: 1312 CHSFDSSNVE 1341
CHSFDSSNVE
Sbjct: 262 CHSFDSSNVE 271
>ref|XP_003360941.1| PREDICTED: insulin-like growth factor-binding protein 5-like [Sus
scrofa].
Length = 325
Score = 420 bits (1079), Expect = e-117
Identities = 205/238 (86%), Positives = 205/238 (86%)
Frame = +1
Query: 598 VHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPRQ 777
VHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPR
Sbjct: 24 VHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPR- 82
Query: 778 DEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHTRI 957
CLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHTRI
Sbjct: 83 ---------------CLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHTRI 127
Query: 958 SELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQELK 1137
SELKAEAVKKDRRKKLTQSKFVGGAENT GPCRRHMEASLQELK
Sbjct: 128 SELKAEAVKKDRRKKLTQSKFVGGAENT-----------------GPCRRHMEASLQELK 170
Query: 1138 ASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ 1311
ASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ
Sbjct: 171 ASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ 228
>ref|NP_001005156.1| insulin-like growth factor-binding protein 3 precursor [Sus scrofa].
Length = 293
Score = 228 bits (582), Expect = 6e-60
Identities = 117/257 (45%), Positives = 155/257 (60%), Gaps = 13/257 (5%)
Frame = +1
Query: 598 VHCEPCDEKALSMCPPSPLG---CELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCL 768
V CEPCD +AL+ C P P ELV+EPGCGCC+TCAL EGQ+CGVYTERC GLRC
Sbjct: 38 VRCEPCDARALAQCAPPPAAPPCAELVREPGCGCCLTCALREGQACGVYTERCGAGLRCQ 97
Query: 769 PRQDEEKPLHALLHGRGVCLNEKSY-REQAKI------ERDSREHEEPTTSEMAEETYSP 927
P E +PL ALL GRG+C N + R +A + + E EE + + E P
Sbjct: 98 PPPGEPRPLQALLDGRGICANASAAGRLRAYLLPAPPAPGNGSESEEDRSVDSMENQALP 157
Query: 928 KIFRPKHTRISEL--KAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPC 1101
R +++ + K + +KK K + K +++T S E ++E+E GPC
Sbjct: 158 STHRVPDSKLHSIHTKMDVIKKGHAKDSQRYKVDYESQSTDTQNFSS--ESKRETEYGPC 215
Query: 1102 RRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLP 1281
RR ME +L LK + PR +++PNCD+KGFYK+KQC+PS+GRKRG CWCVDKYG LP
Sbjct: 216 RREMEDTLNHLKFLNMLSPRGIHIPNCDKKGFYKKKQCRPSKGRKRGFCWCVDKYGQPLP 275
Query: 1282 GMEYV-DGDFQCHSFDS 1329
G + GD C+S +S
Sbjct: 276 GFDVKGKGDVHCYSMES 292
>ref|NP_001116601.1| insulin-like growth factor-binding protein 4 precursor [Sus scrofa].
Length = 259
Score = 177 bits (450), Expect = 1e-44
Identities = 101/252 (40%), Positives = 136/252 (53%), Gaps = 7/252 (2%)
Frame = +1
Query: 598 VHCEPCDEKALSMCPPSPLGCE-LVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPR 774
+HC PC E+ L+ C P P+GCE LV+EPGCGCC TCAL +G CGVYT RC GLRC P
Sbjct: 26 IHCPPCSEEKLARCRP-PVGCEELVREPGCGCCATCALGKGMPCGVYTPRCGSGLRCYPP 84
Query: 775 QDEEKPLHALLHGRGVCLNEKSYREQAKIE--RDSREHEEPTTSEMAEETYSPKIFRPKH 948
+ EKPLH L+HG+G+C+ E A+IE ++S + + + ++SP P+
Sbjct: 85 RGVEKPLHTLMHGQGLCM------ELAEIEAIQESLQPSDKDEGDHPNNSFSP--CSPQD 136
Query: 949 TRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQ 1128
R + K A +DR + K +G A P QG C+ + +L+
Sbjct: 137 RRCLQ-KHLAKIRDRSTSGGKMKVIGAPREEARP-----------VPQGSCQSELHRALE 184
Query: 1129 ELKASPRMVPRAVY---LPNCDRKGFYKRKQCKPSRGRKRGICWCVD-KYGMKLPGMEYV 1296
L AS R +Y +PNCDR G + KQC P+ +RG CWCVD K G+KLPG
Sbjct: 185 RLAASQRRTHEDLYIIPIPNCDRNGNFHPKQCHPALDGQRGKCWCVDRKTGVKLPGGLEP 244
Query: 1297 DGDFQCHSFDSS 1332
G+ CH S
Sbjct: 245 KGELDCHQLADS 256
>ref|NP_001182034.1| insulin-like growth factor-binding protein 1 [Sus scrofa].
Length = 263
Score = 143 bits (361), Expect = 2e-34
Identities = 89/255 (34%), Positives = 127/255 (49%), Gaps = 11/255 (4%)
Frame = +1
Query: 601 HCEPCDEKALSMCPPSPLGC-ELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPRQ 777
HC PC + L++CPP P C E + GCGCC TCAL G +CGV T RCA+GL C
Sbjct: 31 HCAPCSAERLALCPPVPASCPEATRPAGCGCCPTCALPLGAACGVATARCARGLSCRALP 90
Query: 778 DEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHTRI 957
E +PLHAL G+G C+ S ++ E ++P A ET SP+
Sbjct: 91 GEPRPLHALTRGQGACMPAPS--------AEATETKDPA----APETTSPES-------- 130
Query: 958 SELKAEAVKKDRRKKLTQSKFV----GGAENTAHPRVISAPEMRQESEQGPCRRHMEASL 1125
+E+ E + T S+ + N + + A ++++ E PC+R + L
Sbjct: 131 TEMTQEQLLDSFHLMATSSEDLPILWNAINNYESMKALEATDIKKWKE--PCQRELYKVL 188
Query: 1126 QEL-----KASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKY-GMKLPGM 1287
L KA R+ YLPNC++ GFY KQC+ S + G+CWCV + G K+ G
Sbjct: 189 DRLAREQQKAGDRLYK--FYLPNCNKNGFYHSKQCETSLEGEPGLCWCVYPWSGKKILGS 246
Query: 1288 EYVDGDFQCHSFDSS 1332
V GD +CH + +S
Sbjct: 247 TAVRGDPKCHQYFNS 261
>ref|NP_999168.1| insulin-like growth factor-binding protein 2 precursor [Sus scrofa].
Length = 316
Score = 139 bits (350), Expect = 4e-33
Identities = 84/273 (30%), Positives = 125/273 (45%), Gaps = 33/273 (12%)
Frame = +1
Query: 604 CEPCDEKALSMCPPSPLG---------------CELVKEPGCGCCMTCALAEGQSCGVYT 738
C PC ++L+ C P P CELV+EPGCGCC CA EG+ CGVYT
Sbjct: 35 CPPCTPESLAACRPPPAAPPSAGAGPAGDSRAPCELVREPGCGCCSVCARLEGERCGVYT 94
Query: 739 ERCAQGLRCLPRQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEET 918
RCAQGLRC P E PL AL+ G G C + A E+ + ++ + + E
Sbjct: 95 PRCAQGLRCYPHPGSELPLQALVLGEGTCEKRRDAEYGASPEQVA-DNGDDAEGGLVENH 153
Query: 919 YSPKI----------FRPKHTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAP 1068
+ +P + + EL R+K+T+ G H +
Sbjct: 154 VDGNVNLLGGTGGAGRKPLKSGMKELAV------FREKVTEQHRQMGKGGKHHLGLEEPK 207
Query: 1069 EMRQESEQGPCRRHMEASLQEL-------KASPRMVPRAVYLPNCDRKGFYKRKQCKPSR 1227
++R + PC++ ++ L+ + + P ++++PNCD+ G Y KQCK S
Sbjct: 208 KLRPPPARTPCQQELDQVLERISTMRLPDERGPLEHLYSLHIPNCDKHGLYNLKQCKMSL 267
Query: 1228 GRKRGICWCVD-KYGMKLPGMEYVDGDFQCHSF 1323
+RG CWCV+ G + G + GD +CH F
Sbjct: 268 NGQRGECWCVNPNTGKLIQGAPTIRGDPECHLF 300
>ref|NP_001093660.1| insulin-like growth factor-binding protein 6 [Sus scrofa].
Length = 236
Score = 133 bits (334), Expect = 3e-31
Identities = 79/251 (31%), Positives = 116/251 (46%), Gaps = 5/251 (1%)
Frame = +1
Query: 592 SFVHCEPCDEKALSMCPPSPLGCELVKE-----PGCGCCMTCALAEGQSCGVYTERCAQG 756
+ C C + + CP GC ++ GC C EGQ CGVYT CA G
Sbjct: 23 ALAQCPGCGQGVQTGCPG---GCAEEEDGGPPTEGCAEAGGCLRREGQQCGVYTPNCAPG 79
Query: 757 LRCLPRQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIF 936
L+C P ++++ PL ALL GRG C ++ P
Sbjct: 80 LQCQPPEEDQAPLRALLLGRGRCRRART----------------------------PSGE 111
Query: 937 RPKHTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHME 1116
PK S+ +A + + K G + + P P Q++E GPCRRH++
Sbjct: 112 NPKE---SKPQAGTTRSQDVNRRDPQKSPGTSTTPSRPN----PGGVQDTEMGPCRRHLD 164
Query: 1117 ASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYV 1296
+ LQ+L+ +Y+PNCD +GFY+++QC+ S+G++RG CWCVD+ G L G
Sbjct: 165 SVLQQLQTEVFRGAHTLYVPNCDHRGFYRKRQCRSSQGQRRGPCWCVDRMGQPLAGSPDG 224
Query: 1297 DGDFQCHSFDS 1329
DG+ C S S
Sbjct: 225 DGNAPCPSGSS 235
>ref|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa].
Length = 427
Score = 52.4 bits (124), Expect = 7e-07
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Frame = +1
Query: 988 DRRKKLTQSKFVGGAENTAHPRVISAPEMR---QESEQGPCRRHMEASLQELKASPRMVP 1158
D+ ++ T++ F + +T R IS E Q + PC+ + +S+Q+ +++
Sbjct: 273 DKNEQCTEAFF--NSCDTYRDRSISNNEWCYCFQRQQDPPCQTEL-SSIQKRLGVKKLLG 329
Query: 1159 RAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQC 1314
+ Y+P CD G+YK QC S G+ CWCVD+YG ++ G DG C
Sbjct: 330 Q--YIPQCDEDGYYKPMQCHGSAGQ----CWCVDRYGNEVVGSR-TDGVADC 374
>ref|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa].
Length = 424
Score = 52.4 bits (124), Expect = 7e-07
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Frame = +1
Query: 988 DRRKKLTQSKFVGGAENTAHPRVISAPEMR---QESEQGPCRRHMEASLQELKASPRMVP 1158
D+ ++ T++ F + +T R IS E Q + PC+ + +S+Q+ +++
Sbjct: 270 DKNEQCTEAFF--NSCDTYRDRSISNNEWCYCFQRQQDPPCQTEL-SSIQKRLGVKKLLG 326
Query: 1159 RAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQC 1314
+ Y+P CD G+YK QC S G+ CWCVD+YG ++ G DG C
Sbjct: 327 Q--YIPQCDEDGYYKPMQCHGSAGQ----CWCVDRYGNEVVGSR-TDGVADC 371
>ref|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa].
Length = 424
Score = 52.4 bits (124), Expect = 7e-07
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Frame = +1
Query: 988 DRRKKLTQSKFVGGAENTAHPRVISAPEMR---QESEQGPCRRHMEASLQELKASPRMVP 1158
D+ ++ T++ F + +T R IS E Q + PC+ + +S+Q+ +++
Sbjct: 270 DKNEQCTEAFF--NSCDTYRDRSISNNEWCYCFQRQQDPPCQTEL-SSIQKRLGVKKLLG 326
Query: 1159 RAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQC 1314
+ Y+P CD G+YK QC S G+ CWCVD+YG ++ G DG C
Sbjct: 327 Q--YIPQCDEDGYYKPMQCHGSAGQ----CWCVDRYGNEVVGSR-TDGVADC 371
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,727,754
Number of extensions: 1217186
Number of successful extensions: 6014
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 5936
Number of HSP's successfully gapped: 16
Length of query: 527
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 423
Effective length of database: 8,754,644
Effective search space: 3703214412
Effective search space used: 3703214412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007839
(1581 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034648.2| insulin-like growth factor-binding protein 5 pr... 523 e-148
Alignment gi|NP_032369.2| insulin-like growth factor-binding protein 3 [M... 222 7e-58
Alignment gi|NP_034647.1| insulin-like growth factor-binding protein 4 pr... 165 8e-41
Alignment gi|NP_032367.3| insulin-like growth factor-binding protein 1 pr... 147 2e-35
Alignment gi|NP_032368.2| insulin-like growth factor-binding protein 2 pr... 134 2e-31
Alignment gi|NP_032370.2| insulin-like growth factor-binding protein 6 pr... 133 3e-31
Alignment gi|NP_443720.1| testican-2 precursor [Mus musculus]. 53 6e-07
Alignment gi|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus]. 51 2e-06
Alignment gi|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus]. 51 2e-06
Alignment gi|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus]. 51 2e-06
>ref|NP_034648.2| insulin-like growth factor-binding protein 5 precursor [Mus
musculus].
Length = 271
Score = 523 bits (1348), Expect = e-148
Identities = 244/250 (97%), Positives = 246/250 (98%)
Frame = +1
Query: 592 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP 771
SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP
Sbjct: 22 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP 81
Query: 772 RQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHT 951
RQDEEKPLHALLHGRGVCLNEKSY EQ KIERDSREHEEPTTSEMAEETYSPK+FRPKHT
Sbjct: 82 RQDEEKPLHALLHGRGVCLNEKSYGEQTKIERDSREHEEPTTSEMAEETYSPKVFRPKHT 141
Query: 952 RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQE 1131
RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVI APEMRQESEQGPCRRHMEASLQE
Sbjct: 142 RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVIPAPEMRQESEQGPCRRHMEASLQE 201
Query: 1132 LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ 1311
KASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ
Sbjct: 202 FKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ 261
Query: 1312 CHSFDSSNVE 1341
CH+FDSSNVE
Sbjct: 262 CHAFDSSNVE 271
>ref|NP_032369.2| insulin-like growth factor-binding protein 3 [Mus musculus].
Length = 292
Score = 222 bits (565), Expect = 7e-58
Identities = 113/242 (46%), Positives = 143/242 (59%), Gaps = 11/242 (4%)
Frame = +1
Query: 598 VHCEPCDEKALSMCPPSPLG---CELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCL 768
V CEPCD +ALS C P P ELV+EPGCGCC+TCAL EG +CGVYTERC GLRC
Sbjct: 38 VRCEPCDARALSQCAPPPTAPACTELVREPGCGCCLTCALREGDACGVYTERCGTGLRCQ 97
Query: 769 PRQDEEKPLHALLHGRGVCLNEKS------YREQAKIERDSREHEEPTTSEMAEETYSPK 930
PR E+ PL ALL+GRG C N + Y + E EE + E P
Sbjct: 98 PRPAEQYPLRALLNGRGFCANASAAGSLSTYLPSQPAPGNISESEEEHNAGSVESQVVPS 157
Query: 931 IFRPKHTRISEL--KAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCR 1104
R ++ L K + +KK + + K +++T S E ++E+E GPCR
Sbjct: 158 THRVTDSKFHPLHAKMDVIKKGHARDSQRYKVDYESQSTDTQNFSS--ESKRETEYGPCR 215
Query: 1105 RHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPG 1284
R ME +L LK + PR V++PNCD+KGFYK+KQC+PS+GRKRG CWCVDKYG LPG
Sbjct: 216 REMEDTLNHLKFLNVLSPRGVHIPNCDKKGFYKKKQCRPSKGRKRGFCWCVDKYGQPLPG 275
Query: 1285 ME 1290
+
Sbjct: 276 YD 277
>ref|NP_034647.1| insulin-like growth factor-binding protein 4 precursor [Mus
musculus].
Length = 254
Score = 165 bits (418), Expect = 8e-41
Identities = 100/254 (39%), Positives = 126/254 (49%), Gaps = 9/254 (3%)
Frame = +1
Query: 598 VHCEPCDEKALSMCPPSPLGCE-LVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPR 774
+HC PC E+ L+ C P P+GCE LV+EPGCGCC TCAL G CGVYT RC G+RC P
Sbjct: 25 IHCPPCSEEKLARCRP-PVGCEELVREPGCGCCATCALGLGMPCGVYTPRCGSGMRCYPP 83
Query: 775 QDEEKPLHALLHGRGVC--LNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRP-- 942
+ EKPL L+HG+GVC L+E +++ D E E P S F P
Sbjct: 84 RGVEKPLRTLMHGQGVCTELSEIEAIQESLQTSDKDESEHPNNS-----------FNPCS 132
Query: 943 KHTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEAS 1122
H K A +DR K K VG P QG C+ + +
Sbjct: 133 AHDHRCLQKHMAKIRDRSK----MKIVGTPREEPRP-----------VPQGSCQSELHRA 177
Query: 1123 LQELKASPRMVPRAVY---LPNCDRKGFYKRKQCKPSRGRKRGICWCVD-KYGMKLPGME 1290
L+ L AS ++ +PNCDR G + KQC P+ +RG CWCVD K G+KLPG
Sbjct: 178 LERLAASQSRTHEDLFIIPIPNCDRNGNFHPKQCHPALDGQRGKCWCVDRKTGVKLPGGL 237
Query: 1291 YVDGDFQCHSFDSS 1332
G+ CH S
Sbjct: 238 EPKGELDCHQLADS 251
>ref|NP_032367.3| insulin-like growth factor-binding protein 1 precursor [Mus
musculus].
Length = 272
Score = 147 bits (372), Expect = 2e-35
Identities = 86/246 (34%), Positives = 122/246 (49%), Gaps = 5/246 (2%)
Frame = +1
Query: 601 HCEPCDEKALSMCPPSPLGCELVKEP-GCGCCMTCALAEGQSCGVYTERCAQGLRCLPRQ 777
HC PC + L +CPP P C + P GCGCC TCAL G +CGV T RCAQGL C
Sbjct: 31 HCAPCTAERLGLCPPVPASCPEISRPAGCGCCPTCALPMGAACGVATARCAQGLSCRALP 90
Query: 778 DEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHTRI 957
E +PLHAL G+G C+ E + A S +HEE + ++ + S P+ T
Sbjct: 91 GEPRPLHALTRGQGACVPEPA--APATSTLFSSQHEEAKAAVVSADELSES---PEMTEE 145
Query: 958 SELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQELK 1137
L + + R+ Q + R ++++ E PC+R + L+ L
Sbjct: 146 QLLDSFHLMAPSRE--DQPILWNAISTYSSMRAREIADLKKWKE--PCQRELYKVLERLA 201
Query: 1138 ASPRMVPRAV---YLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKY-GMKLPGMEYVDGD 1305
A+ + + YLPNC++ GFY KQC+ S + G+CWCV + G K+PG GD
Sbjct: 202 AAQQKAGDEIYKFYLPNCNKNGFYHSKQCETSLDGEAGLCWCVYPWSGKKIPGSLETRGD 261
Query: 1306 FQCHSF 1323
CH +
Sbjct: 262 PNCHQY 267
>ref|NP_032368.2| insulin-like growth factor-binding protein 2 precursor [Mus
musculus].
Length = 305
Score = 134 bits (337), Expect = 2e-31
Identities = 81/258 (31%), Positives = 120/258 (46%), Gaps = 12/258 (4%)
Frame = +1
Query: 604 CEPCDEKALSMCPPSPLG--CELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPRQ 777
C PC + L+ C P P ELV+EPGCGCC CA EG++CGVY RCAQ LRC P
Sbjct: 40 CPPCTPERLAACGPPPDAPCAELVREPGCGCCSVCARQEGEACGVYIPRCAQTLRCYPNP 99
Query: 778 DEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHTRI 957
E PL AL+ G G C + ++ +H E E + +
Sbjct: 100 GSELPLKALVTGAGTCEKRRVGTTPQQVADSDDDHSEGGLVENHVDGTMNMLGGGSSAGR 159
Query: 958 SELKA--EAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQE 1131
LK+ + + R K Q + +G + H + ++R + PC++ ++ L+
Sbjct: 160 KPLKSGMKELAVFREKVNEQHRQMG--KGAKHLSLEEPKKLRPPPARTPCQQELDQVLER 217
Query: 1132 LKA-------SPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVD-KYGMKLPGM 1287
+ P ++++PNCD+ G Y KQCK S +RG CWCV+ G + G
Sbjct: 218 ISTMRLPDDRGPLEHLYSLHIPNCDKHGRYNLKQCKMSLNGQRGECWCVNPNTGKPIQGA 277
Query: 1288 EYVDGDFQCHSFDSSNVE 1341
+ GD +CH F + E
Sbjct: 278 PTIRGDPECHLFYNEQQE 295
>ref|NP_032370.2| insulin-like growth factor-binding protein 6 precursor [Mus
musculus].
Length = 238
Score = 133 bits (335), Expect = 3e-31
Identities = 87/252 (34%), Positives = 120/252 (47%), Gaps = 17/252 (6%)
Frame = +1
Query: 625 ALSMCPPSPLGCELVKEPGC-----------GCCMT--CALAEGQSCGVYTERCAQGLRC 765
AL+ CP G + GC GC C EGQ CGVY+ +CA GL+C
Sbjct: 26 ALAGCPGCGAGMQTGCRGGCVEEEDAGSPADGCTEAGGCLRREGQPCGVYSPKCAPGLQC 85
Query: 766 LPRQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPK 945
PR++EE PL ALL G+G C + +R E TT E + + +
Sbjct: 86 QPRENEEAPLRALLIGQGRC-------------QRARGPSEETTKESKPQGGASRSRDTN 132
Query: 946 HTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAP---EMRQESEQGPCRRHME 1116
H +DR+K +PR +AP Q+SE GPCRRH++
Sbjct: 133 H------------RDRQK---------------NPRTSAAPIRPNPVQDSEMGPCRRHLD 165
Query: 1117 ASLQELKASP-RMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEY 1293
+ LQ+L+ R R +Y+PNCD +GFY+++QC+ S+G +RG CWCVD G LP
Sbjct: 166 SVLQQLQTEVFRGGARGLYVPNCDLRGFYRKQQCRSSQGNRRGPCWCVDPMGQPLPVSPD 225
Query: 1294 VDGDFQCHSFDS 1329
G QC + S
Sbjct: 226 GQGSTQCSARSS 237
>ref|NP_443720.1| testican-2 precursor [Mus musculus].
Length = 423
Score = 53.1 bits (126), Expect = 6e-07
Identities = 24/66 (36%), Positives = 41/66 (62%)
Frame = +1
Query: 1087 EQGPCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKY 1266
E+ PC +E + +++ + + P V++P+CD G+Y++ QC SRG CWCVD+
Sbjct: 308 EKPPCLAELERT--QIQEAAKKKP-GVFIPSCDEDGYYRKMQCDQSRGD----CWCVDQL 360
Query: 1267 GMKLPG 1284
G++L G
Sbjct: 361 GLELTG 366
>ref|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus].
Length = 441
Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +1
Query: 1096 PCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMK 1275
PC+ M +Q+L ++ ++P C+ +G+YK QC S G+ CWCVDKYG +
Sbjct: 314 PCQNEMNR-IQKLSKGKSLL--GAFIPRCNEEGYYKATQCHGSTGQ----CWCVDKYGNE 366
Query: 1276 LPG 1284
L G
Sbjct: 367 LAG 369
>ref|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus].
Length = 439
Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +1
Query: 1096 PCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMK 1275
PC+ M +Q+L ++ ++P C+ +G+YK QC S G+ CWCVDKYG +
Sbjct: 312 PCQNEMNR-IQKLSKGKSLL--GAFIPRCNEEGYYKATQCHGSTGQ----CWCVDKYGNE 364
Query: 1276 LPG 1284
L G
Sbjct: 365 LAG 367
>ref|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus].
Length = 442
Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +1
Query: 1096 PCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMK 1275
PC+ M +Q+L ++ ++P C+ +G+YK QC S G+ CWCVDKYG +
Sbjct: 315 PCQNEMNR-IQKLSKGKSLL--GAFIPRCNEEGYYKATQCHGSTGQ----CWCVDKYGNE 367
Query: 1276 LPG 1284
L G
Sbjct: 368 LAG 370
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,562,294
Number of extensions: 1558955
Number of successful extensions: 7509
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7404
Number of HSP's successfully gapped: 10
Length of query: 527
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 421
Effective length of database: 12,433,743
Effective search space: 5234605803
Effective search space used: 5234605803
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007839
(1581 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000590.1| insulin-like growth factor-binding protein 5 pr... 530 e-150
Alignment gi|NP_000589.2| insulin-like growth factor-binding protein 3 is... 230 2e-60
Alignment gi|NP_001013416.1| insulin-like growth factor-binding protein 3... 228 1e-59
Alignment gi|NP_001543.2| insulin-like growth factor-binding protein 4 pr... 173 4e-43
Alignment gi|NP_002169.1| insulin-like growth factor-binding protein 6 pr... 141 2e-33
Alignment gi|NP_000588.2| insulin-like growth factor-binding protein 2 pr... 138 2e-32
Alignment gi|NP_000587.1| insulin-like growth factor-binding protein 1 pr... 129 6e-30
Alignment gi|NP_004589.1| testican-1 precursor [Homo sapiens]. 51 3e-06
>ref|NP_000590.1| insulin-like growth factor-binding protein 5 precursor [Homo
sapiens].
Length = 272
Score = 530 bits (1364), Expect = e-150
Identities = 247/250 (98%), Positives = 249/250 (99%)
Frame = +1
Query: 592 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP 771
SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP
Sbjct: 23 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLP 82
Query: 772 RQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHT 951
RQDEEKPLHALLHGRGVCLNEKSYREQ KIERDSREHEEPTTSEMAEETYSPKIFRPKHT
Sbjct: 83 RQDEEKPLHALLHGRGVCLNEKSYREQVKIERDSREHEEPTTSEMAEETYSPKIFRPKHT 142
Query: 952 RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQE 1131
RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPR+ISAPEMRQESEQGPCRRHMEASLQE
Sbjct: 143 RISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRIISAPEMRQESEQGPCRRHMEASLQE 202
Query: 1132 LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ 1311
LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ
Sbjct: 203 LKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQ 262
Query: 1312 CHSFDSSNVE 1341
CH+FDSSNVE
Sbjct: 263 CHTFDSSNVE 272
>ref|NP_000589.2| insulin-like growth factor-binding protein 3 isoform b precursor
[Homo sapiens].
Length = 291
Score = 230 bits (587), Expect = 2e-60
Identities = 118/262 (45%), Positives = 153/262 (58%), Gaps = 18/262 (6%)
Frame = +1
Query: 598 VHCEPCDEKALSMCPPSPLGC-ELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPR 774
V CEPCD +AL+ C P P C ELV+EPGCGCC+TCAL+EGQ CG+YTERC GLRC P
Sbjct: 38 VRCEPCDARALAQCAPPPAVCAELVREPGCGCCLTCALSEGQPCGIYTERCGSGLRCQPS 97
Query: 775 QDEEKPLHALLHGRGVCLNEKSYRE----------------QAKIERDSREHEEPTTSEM 906
DE +PL ALL GRG+C+N + +++ +R + E P+ S
Sbjct: 98 PDEARPLQALLDGRGLCVNASAVSRLRAYLLPAPPAPGNASESEEDRSAGSVESPSVSS- 156
Query: 907 AEETYSPKIFRPKHTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQES 1086
PK F P H++I +K K +R K+ +N + E ++E+
Sbjct: 157 THRVSDPK-FHPLHSKIIIIKKGHAKDSQRYKVDYESQSTDTQNFSS-------ESKRET 208
Query: 1087 EQGPCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKY 1266
E GPCRR ME +L LK + PR V++PNCD+KGFYK+KQC+PS+GRKRG CWCVDKY
Sbjct: 209 EYGPCRREMEDTLNHLKFLNVLSPRGVHIPNCDKKGFYKKKQCRPSKGRKRGFCWCVDKY 268
Query: 1267 GMKLPGMEYV-DGDFQCHSFDS 1329
G LPG D C+S S
Sbjct: 269 GQPLPGYTTKGKEDVHCYSMQS 290
>ref|NP_001013416.1| insulin-like growth factor-binding protein 3 isoform a precursor
[Homo sapiens].
Length = 297
Score = 228 bits (581), Expect = 1e-59
Identities = 118/268 (44%), Positives = 153/268 (57%), Gaps = 24/268 (8%)
Frame = +1
Query: 598 VHCEPCDEKALSMCPPSPLGC-ELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPR 774
V CEPCD +AL+ C P P C ELV+EPGCGCC+TCAL+EGQ CG+YTERC GLRC P
Sbjct: 38 VRCEPCDARALAQCAPPPAVCAELVREPGCGCCLTCALSEGQPCGIYTERCGSGLRCQPS 97
Query: 775 QDEEKPLHALLHGRGVCLNEKSYRE----------------------QAKIERDSREHEE 888
DE +PL ALL GRG+C+N + +++ +R + E
Sbjct: 98 PDEARPLQALLDGRGLCVNASAVSRLRAYLLPAPPAPGEPPAPGNASESEEDRSAGSVES 157
Query: 889 PTTSEMAEETYSPKIFRPKHTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAP 1068
P+ S PK F P H++I +K K +R K+ +N +
Sbjct: 158 PSVSS-THRVSDPK-FHPLHSKIIIIKKGHAKDSQRYKVDYESQSTDTQNFSS------- 208
Query: 1069 EMRQESEQGPCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGIC 1248
E ++E+E GPCRR ME +L LK + PR V++PNCD+KGFYK+KQC+PS+GRKRG C
Sbjct: 209 ESKRETEYGPCRREMEDTLNHLKFLNVLSPRGVHIPNCDKKGFYKKKQCRPSKGRKRGFC 268
Query: 1249 WCVDKYGMKLPGMEYV-DGDFQCHSFDS 1329
WCVDKYG LPG D C+S S
Sbjct: 269 WCVDKYGQPLPGYTTKGKEDVHCYSMQS 296
>ref|NP_001543.2| insulin-like growth factor-binding protein 4 precursor [Homo
sapiens].
Length = 258
Score = 173 bits (439), Expect = 4e-43
Identities = 101/252 (40%), Positives = 131/252 (51%), Gaps = 7/252 (2%)
Frame = +1
Query: 598 VHCEPCDEKALSMCPPSPLGCE-LVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPR 774
+HC PC E+ L+ C P P+GCE LV+EPGCGCC TCAL G CGVYT RC GLRC P
Sbjct: 25 IHCPPCSEEKLARCRP-PVGCEELVREPGCGCCATCALGLGMPCGVYTPRCGSGLRCYPP 83
Query: 775 QDEEKPLHALLHGRGVCLNEKSYREQAKIE--RDSREHEEPTTSEMAEETYSPKIFRPKH 948
+ EKPLH L+HG+GVC+ E A+IE ++S + + + ++SP H
Sbjct: 84 RGVEKPLHTLMHGQGVCM------ELAEIEAIQESLQPSDKDEGDHPNNSFSP---CSAH 134
Query: 949 TRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQ 1128
R K A +DR + K G A P QG C+ + +L+
Sbjct: 135 DRRCLQKHFAKIRDRSTSGGKMKVNGAPREDARP-----------VPQGSCQSELHRALE 183
Query: 1129 ELKASPRMVPRAVY---LPNCDRKGFYKRKQCKPSRGRKRGICWCVD-KYGMKLPGMEYV 1296
L AS +Y +PNCDR G + KQC P+ +RG CWCVD K G+KLPG
Sbjct: 184 RLAASQSRTHEDLYIIPIPNCDRNGNFHPKQCHPALDGQRGKCWCVDRKTGVKLPGGLEP 243
Query: 1297 DGDFQCHSFDSS 1332
G+ CH S
Sbjct: 244 KGELDCHQLADS 255
>ref|NP_002169.1| insulin-like growth factor-binding protein 6 precursor [Homo
sapiens].
Length = 240
Score = 141 bits (355), Expect = 2e-33
Identities = 81/243 (33%), Positives = 119/243 (48%), Gaps = 2/243 (0%)
Frame = +1
Query: 592 SFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMT--CALAEGQSCGVYTERCAQGLRC 765
+ C C + + CP + E P GC C EGQ CGVYT CA GL+C
Sbjct: 25 ALARCPGCGQGVQAGCPGGCVEEEDGGSPAEGCAEAEGCLRREGQECGVYTPNCAPGLQC 84
Query: 766 LPRQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPK 945
P +D+E PL ALL GRG CL ++ +AEE +PK +P
Sbjct: 85 HPPKDDEAPLRALLLGRGRCLPARA-------------------PAVAEE--NPKESKP- 122
Query: 946 HTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASL 1125
+A + + Q + G + + P Q++E GPCRRH+++ L
Sbjct: 123 -------QAGTARPQDVNRRDQQRNPGTSTTPSQPNSAGV----QDTEMGPCRRHLDSVL 171
Query: 1126 QELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGD 1305
Q+L+ + +Y+PNCD +GFY+++QC+ S+G++RG CWCVD+ G LPG +G
Sbjct: 172 QQLQTEVYRGAQTLYVPNCDHRGFYRKRQCRSSQGQRRGPCWCVDRMGKSLPGSPDGNGS 231
Query: 1306 FQC 1314
C
Sbjct: 232 SSC 234
>ref|NP_000588.2| insulin-like growth factor-binding protein 2 precursor [Homo
sapiens].
Length = 328
Score = 138 bits (347), Expect = 2e-32
Identities = 83/280 (29%), Positives = 126/280 (45%), Gaps = 34/280 (12%)
Frame = +1
Query: 604 CEPCDEKALSMCPPSPLG----------------CELVKEPGCGCCMTCALAEGQSCGVY 735
C PC + L+ C P P+ ELV+EPGCGCC CA EG++CGVY
Sbjct: 45 CPPCTPERLAACGPPPVAPPAAVAAVAGGARMPCAELVREPGCGCCSVCARLEGEACGVY 104
Query: 736 TERCAQGLRCLPRQDEEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEE 915
T RC QGLRC P E PL AL+ G G C + A E+ + ++ + + E
Sbjct: 105 TPRCGQGLRCYPHPGSELPLQALVMGEGTCEKRRDAEYGASPEQVADNGDDHSEGGLVEN 164
Query: 916 TYSPKI----------FRPKHTRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISA 1065
+ +P + + EL R+K+T+ G H +
Sbjct: 165 HVDSTMNMLGGGGSAGRKPLKSGMKELAV------FREKVTEQHRQMGKGGKHHLGLEEP 218
Query: 1066 PEMRQESEQGPCRRHMEASLQEL-------KASPRMVPRAVYLPNCDRKGFYKRKQCKPS 1224
++R + PC++ ++ L+ + + P ++++PNCD+ G Y KQCK S
Sbjct: 219 KKLRPPPARTPCQQELDQVLERISTMRLPDERGPLEHLYSLHIPNCDKHGLYNLKQCKMS 278
Query: 1225 RGRKRGICWCVD-KYGMKLPGMEYVDGDFQCHSFDSSNVE 1341
+RG CWCV+ G + G + GD +CH F + E
Sbjct: 279 LNGQRGECWCVNPNTGKLIQGAPTIRGDPECHLFYNEQQE 318
>ref|NP_000587.1| insulin-like growth factor-binding protein 1 precursor [Homo
sapiens].
Length = 259
Score = 129 bits (325), Expect = 6e-30
Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 5/245 (2%)
Frame = +1
Query: 604 CEPCDEKALSMCPPSPLGC-ELVKEPGCGCCMTCALAEGQSCGVYTERCAQGLRCLPRQD 780
C PC + L++CPP C E+ + GCGCC CAL G +CGV T RCA+GL C
Sbjct: 30 CAPCSAEKLALCPPVSASCSEVTRSAGCGCCPMCALPLGAACGVATARCARGLSCRALPG 89
Query: 781 EEKPLHALLHGRGVCLNEKSYREQAKIERDSREHEEPTTSEMAEETYSPKIFRPKHTRIS 960
E++PLHAL G+G C+ E A ++ E P ++E+ EE ++ H
Sbjct: 90 EQQPLHALTRGQGACVQESD--ASAPHAAEAGSPESPESTEITEE----ELLDNFHLMAP 143
Query: 961 ELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVISAPEMRQESEQGPCRRHMEASLQELKA 1140
+ ++ D SK + +++ E PCR + ++ L
Sbjct: 144 SEEDHSILWDAISTYDGSK------------ALHVTNIKKWKE--PCRIELYRVVESLAK 189
Query: 1141 SPRMVPRAV---YLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKY-GMKLPGMEYVDGDF 1308
+ + YLPNC++ GFY +QC+ S + G+CWCV + G ++PG + GD
Sbjct: 190 AQETSGEEISKFYLPNCNKNGFYHSRQCETSMDGEAGLCWCVYPWNGKRIPGSPEIRGDP 249
Query: 1309 QCHSF 1323
C +
Sbjct: 250 NCQIY 254
>ref|NP_004589.1| testican-1 precursor [Homo sapiens].
Length = 439
Score = 51.2 bits (121), Expect = 3e-06
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +1
Query: 1096 PCRRHMEASLQELKASPRMVPRAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMK 1275
PC+ M +Q+L ++ ++P C+ +G+YK QC S G+ CWCVDKYG +
Sbjct: 312 PCQNEMNR-IQKLSKGKSLL--GAFIPRCNEEGYYKATQCHGSTGQ----CWCVDKYGNE 364
Query: 1276 LPG 1284
L G
Sbjct: 365 LAG 367
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,514,676
Number of extensions: 1886618
Number of successful extensions: 8937
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8846
Number of HSP's successfully gapped: 9
Length of query: 527
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 420
Effective length of database: 14,770,016
Effective search space: 6203406720
Effective search space used: 6203406720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007839
(1581 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1570 0.0
gb|JH118558.1| Sus scrofa unplaced genomic scaffold ChrUScaf1007 1090 0.0
>Sscrofa_Chr15
|| Length = 157681621
Score = 1570 bits (792), Expect = 0.0
Identities = 839/862 (97%)
Strand = Plus / Minus
Query: 1 cccccaccgtcgcggctgcagccgccgcctcatacctgttccgcggcagccgtgcgccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131634650 cccccaccgtcgcggctgcagccgccgcctcatacctgttccgcggcagccgtgcgccgc 131634591
Query: 61 tggcggctgagggttagaaaggagaagggtgtagtttgagattttaaacaaaaatttcga 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131634590 tggcggctgagggttaaaaaggagaagggtgtagtttgagattttaaacaaaaatttcga 131634531
Query: 121 agaaaaatctatttttatccctcccccctccactgcctccgagctcattattctggttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131634530 agaaaaatctatttttatccctcccccctccactgcctccgagctcattattctggttgt 131634471
Query: 181 tgtttgannnnnnnnacaattttttgctccctcccagcccctgcaattctgaccaggcca 240
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131634470 tgtttgaggggggggacaattttttgctccctcccagcccctgcaattctgaccaggcca 131634411
Query: 241 ggcttgggggtttgtttctctgacctccaattcctctgcgtgcacctggcgctgctcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131634410 ggcttgggggtttgtttctctgacctccaattcctctgcgtgcacctggcgctgctcttt 131634351
Query: 301 ttccccctacctgttgcaagtctgtaatctttgcaattgggacttgcttgcaggcactcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131634350 ttccccctacctgttgcaagtctgtaatctttgcaattgggacttgcttgcaggcactcc 131634291
Query: 361 agccctccatcgctccctgcattttgcaattgtctgggggagggcacctgctctacctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131634290 agccctccatcgctccctgcattttgcaattgtctgggggagggcacctgctctacctgc 131634231
Query: 421 cagaaattttaaaaagaaaagaatttctccgcgcgccttcctggcccctttctccttgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131634230 cagaaattttaaaaagaaaagaatttctccgcgcgccttcctggcccctttctccttgca 131634171
Query: 481 ctctcgatctcctgccccgccccaggtaaagggggagactcggagaagatggtgctcacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131634170 ctctcgatctcctgccccgccccaggtaaagggggagactcggagaagatggtgctcacc 131634111
Query: 541 gcggtcctcctgctgctggccgcctgtgccggaccggcccagggcctgggctccttcgtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131634110 gcggtcctcctgctgctggccgcctgtgccggaccggcccagggcctgggctccttcgtg 131634051
Query: 601 cactgcgagccctgcgacgagaaagccctctccatgtgnnnnnnnnnnnnnnttggctgt 660
|||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 131634050 cactgcgagccctgcgacgagaaagccctctccatgtgcccccccagcccccttggctgt 131633991
Query: 661 gagctggtcaaggagcctggctgcggctgctgcatgacctgcgccctggcggaggggcag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131633990 gagctggtcaaggagcctggctgcggctgctgcatgacctgcgccctggcggaggggcag 131633931
Query: 721 tcgtgcggcgtctacactgagcgctgcgcccaggggctgcgctgcctcccccggcaggac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131633930 tcgtgcggcgtctacactgagcgctgcgcccaggggctgcgctgcctcccccggcaggac 131633871
Query: 781 gaggagaagccgctgcacgccctgctgcacggccgcggggtttgcctcaacgaaaagagc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131633870 gaggagaagccgctgcacgccctgctgcacggccgcggggtttgcctcaacgaaaagagc 131633811
Query: 841 taccgcgagcaagccaagatcg 862
||||||||||||||||||||||
Sbjct: 131633810 taccgcgagcaagccaagatcg 131633789
Score = 452 bits (228), Expect = e-124
Identities = 329/360 (91%), Gaps = 5/360 (1%)
Strand = Plus / Minus
Query: 1210 cagtgcaagccttcccgtggccgcaaacgtggcatctgctggtgcgtggacaagtacggg 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131682552 cagtgcaagccttcccgtggccgcaaacgtggcatctgctggtgcgtggacaagtacggg 131682493
Query: 1270 atgaagctgccaggcatggagtacgtggacggggacttccagtgccacagcttcgacagc 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131682492 atgaagctgccaggcatggagtacgtggacggggacttccagtgccacagcttcgacagc 131682433
Query: 1330 agcaacgttgagtgatgcgtcccctccccatcctttcctcctcgncccanntccgcccca 1389
||||||||||||||||||||||||||||||||||| | ||||| |||| | |||||
Sbjct: 131682432 agcaacgttgagtgatgcgtcccctccccatccttcctccctcgccccatcccgccccca 131682373
Query: 1390 gccccaact-cagccagcgcctcccctcaccccaggacgccactcatttcatctcattna 1448
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 131682372 gccccaactccagccagcgcctccctccaccccaggacgccactcatttcatctcattta 131682313
Query: 1449 aggggnnnnnnntacatatatctatctatttgagggaactgaggacctcggaatctcctg 1508
||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 131682312 aggggaaaaaaatacatatatctatctatttgagggaactgaggacctcggaatct-ctg 131682254
Query: 1509 gc-aggtctcancttttgaaacggc-accacagagatgcaaaagcctaa-gagaccccca 1565
|| |||||||| |||| ||| ||| || |||||||||||||| |||| ||||||||||
Sbjct: 131682253 gcaaggtctcaactttgaaaatggcaacaacagagatgcaaaaagctaaggagaccccca 131682194
Score = 452 bits (228), Expect = e-124
Identities = 231/232 (99%)
Strand = Plus / Minus
Query: 862 gagagagactcccgcgagcacgaggagccgaccacttccgagatggcggaggagacctac 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131684608 gagagagactcccgcgagcacgaggagccgaccacttccgagatggcggaggagacctac 131684549
Query: 922 tcgcccaagatcttccgacccaagcacacccgcatctccgagctgaaggcagaggccgtg 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131684548 tcgcccaagatcttccgacccaagcacacccgcatctccgagctgaaggcagaggccgtg 131684489
Query: 982 aagaaggaccgcagaaagaagctgacccagtccaagttcgtggggggagctgagaacacc 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131684488 aagaaggaccgcagaaagaagctgacccagtccaagttcgtggggggagctgagaacacc 131684429
Query: 1042 gcccaccctcgagtcatctcggcgcctgagatgagacaggaatctgagcagg 1093
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 131684428 gcccaccctcgagtcatctcagcgcctgagatgagacaggaatctgagcagg 131684377
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 1090 cagggtccctgccgcaggcacatggaggcttccctgcaggagctcaaagccagcccgcgc 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131684087 cagggtccctgccgcaggcacatggaggcttccctgcaggagctcaaagccagcccgcgc 131684028
Query: 1150 atggtgccccgcgcggtgtacctgcccaactgtgaccgcaagggattctacaagagaaag 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131684027 atggtgccccgcgcggtgtacctgcccaactgtgaccgcaagggattctacaagagaaag 131683968
Query: 1210 cag 1212
|||
Sbjct: 131683967 cag 131683965
Score = 186 bits (94), Expect = 3e-44
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 996 aaagaagctgacccagtccaagttcgtggggggagctgagaacaccgcccaccctcgagt 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131631642 aaagaagctgacccagtccaagttcgtggggggagctgagaacaccgcccaccctcgagt 131631701
Query: 1056 catctcggcgcctgagatgagacaggaatctgagcagg 1093
|||||| |||||||||||||||||||||||||||||||
Sbjct: 131631702 catctcagcgcctgagatgagacaggaatctgagcagg 131631739
>gb|JH118558.1| Sus scrofa unplaced genomic scaffold ChrUScaf1007
Length = 94933
Score = 1090 bits (550), Expect = 0.0
Identities = 569/578 (98%)
Strand = Plus / Plus
Query: 1 cccccaccgtcgcggctgcagccgccgcctcatacctgttccgcggcagccgtgcgccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22415 cccccaccgtcgcggctgcagccgccgcctcatacctgttccgcggcagccgtgcgccgc 22474
Query: 61 tggcggctgagggttagaaaggagaagggtgtagtttgagattttaaacaaaaatttcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22475 tggcggctgagggttagaaaggagaagggtgtagtttgagattttaaacaaaaatttcga 22534
Query: 121 agaaaaatctatttttatccctcccccctccactgcctccgagctcattattctggttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22535 agaaaaatctatttttatccctcccccctccactgcctccgagctcattattctggttgt 22594
Query: 181 tgtttgannnnnnnnacaattttttgctccctcccagcccctgcaattctgaccaggcca 240
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22595 tgtttgaggggggggacaattttttgctccctcccagcccctgcaattctgaccaggcca 22654
Query: 241 ggcttgggggtttgtttctctgacctccaattcctctgcgtgcacctggcgctgctcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22655 ggcttgggggtttgtttctctgacctccaattcctctgcgtgcacctggcgctgctcttt 22714
Query: 301 ttccccctacctgttgcaagtctgtaatctttgcaattgggacttgcttgcaggcactcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22715 ttccccctacctgttgcaagtctgtaatctttgcaattgggacttgcttgcaggcactcc 22774
Query: 361 agccctccatcgctccctgcattttgcaattgtctgggggagggcacctgctctacctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22775 agccctccatcgctccctgcattttgcaattgtctgggggagggcacctgctctacctgc 22834
Query: 421 cagaaattttaaaaagaaaagaatttctccgcgcgccttcctggcccctttctccttgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22835 cagaaattttaaaaagaaaagaatttctccgcgcgccttcctggcccctttctccttgca 22894
Query: 481 ctctcgatctcctgccccgccccaggtaaagggggagactcggagaagatggtgctcacc 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22895 ctctcgatctcctgcccagccccaggtaaagggggagactcggagaagatggtgctcacc 22954
Query: 541 gcggtcctcctgctgctggccgcctgtgccggaccggc 578
||||||||||||||||||||||||||||||||||||||
Sbjct: 22955 gcggtcctcctgctgctggccgcctgtgccggaccggc 22992
Score = 377 bits (190), Expect = e-101
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 862 gagagagactcccgcgagcacgaggagccgaccacttccgagatggcggaggagacctac 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31749 gagagagactcccgcgagcacgaggagccgaccacttccgagatggcggaggagacctac 31808
Query: 922 tcgcccaagatcttccgacccaagcacacccgcatctccgagctgaaggcagaggccgtg 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31809 tcgcccaagatcttccgacccaagcacacccgcatctccgagctgaaggcagaggccgtg 31868
Query: 982 aagaaggaccgcagaaagaagctgacccagtccaagttcgtggggggagctgagaacacc 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31869 aagaaggaccgcagaaagaagctgacccagtccaagttcgtggggggagctgagaacacc 31928
Query: 1042 gcccaccctc 1051
||||||||||
Sbjct: 31929 gcccaccctc 31938
Score = 274 bits (138), Expect = 1e-70
Identities = 166/180 (92%)
Strand = Plus / Plus
Query: 598 gtgcactgcgagccctgcgacgagaaagccctctccatgtgnnnnnnnnnnnnnnttggc 657
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 23093 gtgcactgcgagccctgcgacgagaaagccctctccatgtgcccccccagcccccttggc 23152
Query: 658 tgtgagctggtcaaggagcctggctgcggctgctgcatgacctgcgccctggcggagggg 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23153 tgtgagctggtcaaggagcctggctgcggctgctgcatgacctgcgccctggcggagggg 23212
Query: 718 cagtcgtgcggcgtctacactgagcgctgcgcccaggggctgcgctgcctcccccggcag 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23213 cagtcgtgcggcgtctacactgagcgctgcgcccaggggctgcgctgcctcccccggcag 23272
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1090 cagggtccctgccgcaggcacatggaggcttccctgcaggagctcaaagccagcccgcgc 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32476 cagggtccctgccgcaggcacatggaggcttccctgcaggagctcaaagccagcccgcgc 32535
Query: 1150 atggtgccccgcgcggtgtacctgcccaactgtgaccgcaagggattctacaagagaaag 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32536 atggtgccccgcgcggtgtacctgcccaactgtgaccgcaagggattctacaagagaaag 32595
Query: 1210 cag 1212
|||
Sbjct: 32596 cag 32598
Score = 212 bits (107), Expect = 4e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1210 cagtgcaagccttcccgtggccgcaaacgtggcatctgctggtgcgtggacaagtacggg 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34090 cagtgcaagccttcccgtggccgcaaacgtggcatctgctggtgcgtggacaagtacggg 34149
Query: 1270 atgaagctgccaggcatggagtacgtggacggggacttccagtgcca 1316
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34150 atgaagctgccaggcatggagtacgtggacggggacttccagtgcca 34196
Score = 190 bits (96), Expect = 2e-45
Identities = 197/228 (86%), Gaps = 5/228 (2%)
Strand = Plus / Plus
Query: 1342 tgatgcgtcccctccccatcctttcctcctcgncccanntccgccccagccccaactc-a 1400
||||||||||||||||||||||| | ||||| |||| | ||||||||||||||| |
Sbjct: 34297 tgatgcgtcccctccccatccttcctccctcgccccatcccgcccccagccccaactcca 34356
Query: 1401 gccagcgcctcccctcaccccaggacgccactcatttcatctcattnaaggggnnnnnnn 1460
||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 34357 gccagcgcctccctccaccccaggacgccactcatttcatctcatttaaggggaaaaaaa 34416
Query: 1461 tacatatatctatctatttgagggaactgaggacctcggaatctcctggc-aggtctcan 1519
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 34417 tacatatatctatctatttgagggaactgaggacctcggaatct-ctggcaaggtctcaa 34475
Query: 1520 cttttgaaacggc-accacagagatgcaaaagcctaa-gagaccccca 1565
|||| ||| ||| || |||||||||||||| |||| ||||||||||
Sbjct: 34476 ctttgaaaatggcaacaacagagatgcaaaaagctaaggagaccccca 34523
Score = 83.8 bits (42), Expect = 3e-13
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 821 tttgcctcaacgaaaagagctaccgcgagcaagccaagatcg 862
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23373 tttgcctcaacgaaaagagctaccgcgagcaagccaagatcg 23414
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,777,516
Number of extensions: 542
Number of successful extensions: 542
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 16
Length of query: 1581
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1559
Effective length of database: 2,808,408,574
Effective search space: 4378308966866
Effective search space used: 4378308966866
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)