Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007843
(1237 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002690311.1| PREDICTED: Abelson helper integration site 1... 256 4e-68
Alignment gi|XP_001788246.1| PREDICTED: Abelson helper integration site 1... 256 4e-68
>ref|XP_002690311.1| PREDICTED: Abelson helper integration site 1 [Bos taurus].
Length = 1172
Score = 256 bits (653), Expect = 4e-68
Identities = 152/281 (54%), Positives = 175/281 (62%), Gaps = 3/281 (1%)
Frame = +1
Query: 382 MPTVESEATVETKVRVEELLKAHNDXXXXXXXXXXXXXXXXXXXXXXTLRSNLQKIKETK 561
MPTVESEA V+TKVR EELLKAHND + SNLQKI+ETK
Sbjct: 1 MPTVESEAKVKTKVRFEELLKAHNDLRRERKKLKKKIAQPGEKISLDAVTSNLQKIRETK 60
Query: 562 SDAVSAANTNNPEKNMRVTKNKPRDPRSAHXXXXXXXXXXXXKQEKANK--IQTALQVTA 735
SD ++AANT NPEKNMRV KNKPRDP+SA KQEKANK ++TALQVTA
Sbjct: 61 SDDITAANTKNPEKNMRVIKNKPRDPQSATEDPENDVIVEEDKQEKANKKVMKTALQVTA 120
Query: 736 PQEELETPEKEDATLQKARTKPQPGGTQXXXXXXXXXXXXXSVDEEEELMRVYQLQVXXX 915
+ E E PEK DA QK RTKPQPG T ++D EE+LM+VYQLQV
Sbjct: 121 QEMEPEAPEKGDAAPQKRRTKPQPGVTHDKSEKAKEEGEKNTLD-EEQLMQVYQLQVAEE 179
Query: 916 XXXXXXXXXXXXXXXQLTYFPSDTSLHADKLSGEXXXXXXXXVPILSQSETSTLIISDDP 1095
QL+YFP D+SLH DKLSGE VP LS+SETST IISDDP
Sbjct: 180 MAKEIKKKIRKKLKEQLSYFPLDSSLHDDKLSGEKRKKKKKKVPTLSKSETSTSIISDDP 239
Query: 1096 TEGEQKK-SLVGTVTSESRQDDEVNSVEPNVDDHLQEDPKS 1215
EGEQKK S VG VTS++ QDDEV+S E NV+D++Q+D KS
Sbjct: 240 VEGEQKKESPVGAVTSDTHQDDEVSSKEQNVEDNMQDDSKS 280
>ref|XP_001788246.1| PREDICTED: Abelson helper integration site 1 [Bos taurus].
Length = 1172
Score = 256 bits (653), Expect = 4e-68
Identities = 152/281 (54%), Positives = 175/281 (62%), Gaps = 3/281 (1%)
Frame = +1
Query: 382 MPTVESEATVETKVRVEELLKAHNDXXXXXXXXXXXXXXXXXXXXXXTLRSNLQKIKETK 561
MPTVESEA V+TKVR EELLKAHND + SNLQKI+ETK
Sbjct: 1 MPTVESEAKVKTKVRFEELLKAHNDLRRERKKLKKKIAQPGEKISLDAVTSNLQKIRETK 60
Query: 562 SDAVSAANTNNPEKNMRVTKNKPRDPRSAHXXXXXXXXXXXXKQEKANK--IQTALQVTA 735
SD ++AANT NPEKNMRV KNKPRDP+SA KQEKANK ++TALQVTA
Sbjct: 61 SDDITAANTKNPEKNMRVIKNKPRDPQSATEDPENDVIVEEDKQEKANKKVMKTALQVTA 120
Query: 736 PQEELETPEKEDATLQKARTKPQPGGTQXXXXXXXXXXXXXSVDEEEELMRVYQLQVXXX 915
+ E E PEK DA QK RTKPQPG T ++D EE+LM+VYQLQV
Sbjct: 121 QEMEPEAPEKGDAAPQKRRTKPQPGVTHDKSEKAKEEGEKNTLD-EEQLMQVYQLQVAEE 179
Query: 916 XXXXXXXXXXXXXXXQLTYFPSDTSLHADKLSGEXXXXXXXXVPILSQSETSTLIISDDP 1095
QL+YFP D+SLH DKLSGE VP LS+SETST IISDDP
Sbjct: 180 MAKEIKKKIRKKLKEQLSYFPLDSSLHDDKLSGEKRKKKKKKVPTLSKSETSTSIISDDP 239
Query: 1096 TEGEQKK-SLVGTVTSESRQDDEVNSVEPNVDDHLQEDPKS 1215
EGEQKK S VG VTS++ QDDEV+S E NV+D++Q+D KS
Sbjct: 240 VEGEQKKESPVGAVTSDTHQDDEVSSKEQNVEDNMQDDSKS 280
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,067,994
Number of extensions: 814435
Number of successful extensions: 3216
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3198
Number of HSP's successfully gapped: 2
Length of query: 412
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,207,134
Effective search space: 4361590138
Effective search space used: 4361590138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007843
(1237 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533417.2| PREDICTED: similar to jouberin [Canis familiari... 182 8e-46
>ref|XP_533417.2| PREDICTED: similar to jouberin [Canis familiaris].
Length = 1331
Score = 182 bits (461), Expect = 8e-46
Identities = 130/298 (43%), Positives = 160/298 (53%), Gaps = 24/298 (8%)
Frame = +1
Query: 391 VESEATVETKVRVEELLKAHNDXXXXXXXXXXXXXXXXXXXXXXT--------------- 525
+ESEA V+T+VR EELLK H+D T
Sbjct: 139 LESEAKVKTRVRFEELLKTHHDLIQERKKLKKKIGKSGEKIAVSTFRYLVIFLLENLSSP 198
Query: 526 ---LRSNLQKIKETKSDAVSAANTNNPEKNMRVTKNKPRDPRSAHXXXXXXXXXXXXKQE 696
+RSNLQK KETKSD VS++NT N EKNM TK+K R+ +S +Q
Sbjct: 199 LDTVRSNLQKSKETKSDDVSSSNTTNLEKNMPGTKSKLRNSQST-PENPDDVTVEEDRQW 257
Query: 697 KANK--IQTALQVTAPQEELETP-EKEDATLQKARTKPQPGGTQXXXXXXXXXXXXXSVD 867
KA+K I+T LQ+TA ELETP +K D+T QKARTK QPG +VD
Sbjct: 258 KASKKVIKTVLQMTAQGMELETPMKKVDSTHQKARTKSQPGVAHQKSEKADEERENNNVD 317
Query: 868 EEEELMRVYQLQVXXXXXXXXXXXXXXXXXXQLTYFPSDT--SLHADKLSGEXXXXXXXX 1041
EEEELM+VYQLQV QLTYFP DT SLH KL+ E
Sbjct: 318 EEEELMQVYQLQVAEEMAKEIKKKIRKKLKEQLTYFPLDTTSSLHDGKLNSEKKIKKKKK 377
Query: 1042 VPILSQSETSTLIISDDPTEGEQKK-SLVGTVTSESRQDDEVNSVEPNVDDHLQEDPK 1212
VPI S++ETS IS+D EGEQKK S V TVTS+S QD +++S+E NV+D +Q+D K
Sbjct: 378 VPISSKAETSISNISNDTVEGEQKKGSPVRTVTSDSHQDGKISSMEDNVEDSMQDDTK 435
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,562,480
Number of extensions: 838156
Number of successful extensions: 3200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3182
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 307
Effective length of database: 15,374,224
Effective search space: 4719886768
Effective search space used: 4719886768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007843
(1237 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121231.2| PREDICTED: jouberin [Sus scrofa]. 363 e-101
>ref|XP_003121231.2| PREDICTED: jouberin [Sus scrofa].
Length = 1047
Score = 363 bits (933), Expect = e-101
Identities = 200/280 (71%), Positives = 204/280 (72%)
Frame = +1
Query: 382 MPTVESEATVETKVRVEELLKAHNDXXXXXXXXXXXXXXXXXXXXXXTLRSNLQKIKETK 561
MPTVESEATVETKVRVEELLKAHND TLRSNLQKIKETK
Sbjct: 1 MPTVESEATVETKVRVEELLKAHNDLIRERKKLKKKIGKSGEKISLGTLRSNLQKIKETK 60
Query: 562 SDAVSAANTNNPEKNMRVTKNKPRDPRSAHXXXXXXXXXXXXKQEKANKIQTALQVTAPQ 741
SDAVSAANTNNPEKNMRVTKNKPRDPRSAH KQEKANKIQTALQVTAPQ
Sbjct: 61 SDAVSAANTNNPEKNMRVTKNKPRDPRSAHSEPDDDVSVEEDKQEKANKIQTALQVTAPQ 120
Query: 742 EELETPEKEDATLQKARTKPQPGGTQXXXXXXXXXXXXXSVDEEEELMRVYQLQVXXXXX 921
EELETPEKEDATLQKARTKPQPGGTQ SVDEEEELMRVYQLQV
Sbjct: 121 EELETPEKEDATLQKARTKPQPGGTQEKSEKDEEERENKSVDEEEELMRVYQLQVAEEMA 180
Query: 922 XXXXXXXXXXXXXQLTYFPSDTSLHADKLSGEXXXXXXXXVPILSQSETSTLIISDDPTE 1101
QLTYFPSDTSLHADKLSGE VPILSQSETSTLIISDDPTE
Sbjct: 181 KEIKKKIRKKLKEQLTYFPSDTSLHADKLSGEKRKKKKKKVPILSQSETSTLIISDDPTE 240
Query: 1102 GEQKKSLVGTVTSESRQDDEVNSVEPNVDDHLQEDPKSNP 1221
GEQKKSLVGTVTSESRQDDE+NSVE NVD+++QED KS P
Sbjct: 241 GEQKKSLVGTVTSESRQDDEINSVEQNVDNNMQEDTKSKP 280
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,203,361
Number of extensions: 523674
Number of successful extensions: 2045
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2040
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,829,335
Effective search space: 2745923185
Effective search space used: 2745923185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007843
(1237 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080479.2| jouberin isoform 1 [Mus musculus]. 72 7e-13
>ref|NP_080479.2| jouberin isoform 1 [Mus musculus].
Length = 1047
Score = 72.4 bits (176), Expect = 7e-13
Identities = 53/159 (33%), Positives = 71/159 (44%)
Frame = +1
Query: 745 ELETPEKEDATLQKARTKPQPGGTQXXXXXXXXXXXXXSVDEEEELMRVYQLQVXXXXXX 924
E ETPEK D+ +K R K ++E+ EL YQLQV
Sbjct: 2 EPETPEKVDSAQEKVRGKTPTADDSDDSREKT------GIEEKGELTDAYQLQVAEEMAK 55
Query: 925 XXXXXXXXXXXXQLTYFPSDTSLHADKLSGEXXXXXXXXVPILSQSETSTLIISDDPTEG 1104
QLTYFP DT LH DKL+ E VP+ ++ E+S + D EG
Sbjct: 56 EIKKKIRKKLKEQLTYFPPDTLLHDDKLASEKRKKKKKKVPVPTKPESSPSDVCDSAVEG 115
Query: 1105 EQKKSLVGTVTSESRQDDEVNSVEPNVDDHLQEDPKSNP 1221
EQKK GT +S+ + + S E +VD + E+ K P
Sbjct: 116 EQKKE--GT-PEDSQHMEGICSREQDVDATVPENAKPKP 151
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,325,238
Number of extensions: 694134
Number of successful extensions: 2525
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2522
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 308
Effective length of database: 12,493,815
Effective search space: 3848095020
Effective search space used: 3848095020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007843
(1237 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001128304.1| jouberin isoform b [Homo sapiens]. 187 1e-47
Alignment gi|NP_001128303.1| jouberin isoform a [Homo sapiens]. 187 1e-47
Alignment gi|NP_001128302.1| jouberin isoform a [Homo sapiens]. 187 1e-47
Alignment gi|NP_060121.3| jouberin isoform a [Homo sapiens]. 187 1e-47
>ref|NP_001128304.1| jouberin isoform b [Homo sapiens].
Length = 1053
Score = 187 bits (476), Expect = 1e-47
Identities = 127/302 (42%), Positives = 155/302 (51%), Gaps = 22/302 (7%)
Frame = +1
Query: 382 MPTVESEATVETKVRVEELLKAHNDXXXXXXXXXXXXXXXXXXXXXXTLRSNLQ------ 543
MPT ESEA V+TKVR EELLK H+D T+RSNL
Sbjct: 1 MPTAESEAKVKTKVRFEELLKTHSDLMREKKKLKKKLVRSEENISPDTIRSNLHYMKETT 60
Query: 544 ------------KIKETKSDAVSAANTNNPEKNMRVTKNKPRDPRSAHXXXXXXXXXXXX 687
IKET SD VSAANTNN +K+ RVTKNK R+ + A
Sbjct: 61 SDDPDTIRSNLPHIKETTSDDVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEED 120
Query: 688 KQEKANK--IQTALQVTAPQEELETPE-KEDATLQKARTKPQPGGTQXXXXXXXXXXXXX 858
KQ K NK I+T Q+T + ETPE K D+T QK TKPQPG
Sbjct: 121 KQGKPNKKVIKTVPQLTTQDLKPETPENKVDSTHQKTHTKPQPGVDHQKSEKANEGREET 180
Query: 859 SVDEEEELMRVYQLQVXXXXXXXXXXXXXXXXXXQLTYFPSDTSLHADKLSGEXXXXXXX 1038
++E+EELM+ YQ V QLTYFPSDT H DKLS E
Sbjct: 181 DLEEDEELMQAYQCHVTEEMAKEIKRKIRKKLKEQLTYFPSDTLFHDDKLSSE-KRKKKK 239
Query: 1039 XVPILSQSETSTLIISDDPTEGEQKK-SLVGTVTSESRQDDEVNSVEPNVDDHLQEDPKS 1215
VP+ S++ETSTL IS D EGEQKK S V +V+S+S QDDE++S+E + +D +Q+D K
Sbjct: 240 EVPVFSKAETSTLTISGDTVEGEQKKESSVRSVSSDSHQDDEISSMEQSTEDSMQDDTKP 299
Query: 1216 NP 1221
P
Sbjct: 300 KP 301
>ref|NP_001128303.1| jouberin isoform a [Homo sapiens].
Length = 1196
Score = 187 bits (476), Expect = 1e-47
Identities = 127/302 (42%), Positives = 155/302 (51%), Gaps = 22/302 (7%)
Frame = +1
Query: 382 MPTVESEATVETKVRVEELLKAHNDXXXXXXXXXXXXXXXXXXXXXXTLRSNLQ------ 543
MPT ESEA V+TKVR EELLK H+D T+RSNL
Sbjct: 1 MPTAESEAKVKTKVRFEELLKTHSDLMREKKKLKKKLVRSEENISPDTIRSNLHYMKETT 60
Query: 544 ------------KIKETKSDAVSAANTNNPEKNMRVTKNKPRDPRSAHXXXXXXXXXXXX 687
IKET SD VSAANTNN +K+ RVTKNK R+ + A
Sbjct: 61 SDDPDTIRSNLPHIKETTSDDVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEED 120
Query: 688 KQEKANK--IQTALQVTAPQEELETPE-KEDATLQKARTKPQPGGTQXXXXXXXXXXXXX 858
KQ K NK I+T Q+T + ETPE K D+T QK TKPQPG
Sbjct: 121 KQGKPNKKVIKTVPQLTTQDLKPETPENKVDSTHQKTHTKPQPGVDHQKSEKANEGREET 180
Query: 859 SVDEEEELMRVYQLQVXXXXXXXXXXXXXXXXXXQLTYFPSDTSLHADKLSGEXXXXXXX 1038
++E+EELM+ YQ V QLTYFPSDT H DKLS E
Sbjct: 181 DLEEDEELMQAYQCHVTEEMAKEIKRKIRKKLKEQLTYFPSDTLFHDDKLSSE-KRKKKK 239
Query: 1039 XVPILSQSETSTLIISDDPTEGEQKK-SLVGTVTSESRQDDEVNSVEPNVDDHLQEDPKS 1215
VP+ S++ETSTL IS D EGEQKK S V +V+S+S QDDE++S+E + +D +Q+D K
Sbjct: 240 EVPVFSKAETSTLTISGDTVEGEQKKESSVRSVSSDSHQDDEISSMEQSTEDSMQDDTKP 299
Query: 1216 NP 1221
P
Sbjct: 300 KP 301
>ref|NP_001128302.1| jouberin isoform a [Homo sapiens].
Length = 1196
Score = 187 bits (476), Expect = 1e-47
Identities = 127/302 (42%), Positives = 155/302 (51%), Gaps = 22/302 (7%)
Frame = +1
Query: 382 MPTVESEATVETKVRVEELLKAHNDXXXXXXXXXXXXXXXXXXXXXXTLRSNLQ------ 543
MPT ESEA V+TKVR EELLK H+D T+RSNL
Sbjct: 1 MPTAESEAKVKTKVRFEELLKTHSDLMREKKKLKKKLVRSEENISPDTIRSNLHYMKETT 60
Query: 544 ------------KIKETKSDAVSAANTNNPEKNMRVTKNKPRDPRSAHXXXXXXXXXXXX 687
IKET SD VSAANTNN +K+ RVTKNK R+ + A
Sbjct: 61 SDDPDTIRSNLPHIKETTSDDVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEED 120
Query: 688 KQEKANK--IQTALQVTAPQEELETPE-KEDATLQKARTKPQPGGTQXXXXXXXXXXXXX 858
KQ K NK I+T Q+T + ETPE K D+T QK TKPQPG
Sbjct: 121 KQGKPNKKVIKTVPQLTTQDLKPETPENKVDSTHQKTHTKPQPGVDHQKSEKANEGREET 180
Query: 859 SVDEEEELMRVYQLQVXXXXXXXXXXXXXXXXXXQLTYFPSDTSLHADKLSGEXXXXXXX 1038
++E+EELM+ YQ V QLTYFPSDT H DKLS E
Sbjct: 181 DLEEDEELMQAYQCHVTEEMAKEIKRKIRKKLKEQLTYFPSDTLFHDDKLSSE-KRKKKK 239
Query: 1039 XVPILSQSETSTLIISDDPTEGEQKK-SLVGTVTSESRQDDEVNSVEPNVDDHLQEDPKS 1215
VP+ S++ETSTL IS D EGEQKK S V +V+S+S QDDE++S+E + +D +Q+D K
Sbjct: 240 EVPVFSKAETSTLTISGDTVEGEQKKESSVRSVSSDSHQDDEISSMEQSTEDSMQDDTKP 299
Query: 1216 NP 1221
P
Sbjct: 300 KP 301
>ref|NP_060121.3| jouberin isoform a [Homo sapiens].
Length = 1196
Score = 187 bits (476), Expect = 1e-47
Identities = 127/302 (42%), Positives = 155/302 (51%), Gaps = 22/302 (7%)
Frame = +1
Query: 382 MPTVESEATVETKVRVEELLKAHNDXXXXXXXXXXXXXXXXXXXXXXTLRSNLQ------ 543
MPT ESEA V+TKVR EELLK H+D T+RSNL
Sbjct: 1 MPTAESEAKVKTKVRFEELLKTHSDLMREKKKLKKKLVRSEENISPDTIRSNLHYMKETT 60
Query: 544 ------------KIKETKSDAVSAANTNNPEKNMRVTKNKPRDPRSAHXXXXXXXXXXXX 687
IKET SD VSAANTNN +K+ RVTKNK R+ + A
Sbjct: 61 SDDPDTIRSNLPHIKETTSDDVSAANTNNLKKSTRVTKNKLRNTQLATENPNGDASVEED 120
Query: 688 KQEKANK--IQTALQVTAPQEELETPE-KEDATLQKARTKPQPGGTQXXXXXXXXXXXXX 858
KQ K NK I+T Q+T + ETPE K D+T QK TKPQPG
Sbjct: 121 KQGKPNKKVIKTVPQLTTQDLKPETPENKVDSTHQKTHTKPQPGVDHQKSEKANEGREET 180
Query: 859 SVDEEEELMRVYQLQVXXXXXXXXXXXXXXXXXXQLTYFPSDTSLHADKLSGEXXXXXXX 1038
++E+EELM+ YQ V QLTYFPSDT H DKLS E
Sbjct: 181 DLEEDEELMQAYQCHVTEEMAKEIKRKIRKKLKEQLTYFPSDTLFHDDKLSSE-KRKKKK 239
Query: 1039 XVPILSQSETSTLIISDDPTEGEQKK-SLVGTVTSESRQDDEVNSVEPNVDDHLQEDPKS 1215
VP+ S++ETSTL IS D EGEQKK S V +V+S+S QDDE++S+E + +D +Q+D K
Sbjct: 240 EVPVFSKAETSTLTISGDTVEGEQKKESSVRSVSSDSHQDDEISSMEQSTEDSMQDDTKP 299
Query: 1216 NP 1221
P
Sbjct: 300 KP 301
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,855,023
Number of extensions: 822794
Number of successful extensions: 3104
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3067
Number of HSP's successfully gapped: 4
Length of query: 412
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,835,944
Effective search space: 4554634808
Effective search space used: 4554634808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007843
(1237 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 987 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 987 bits (498), Expect = 0.0
Identities = 498/498 (100%)
Strand = Plus / Plus
Query: 517 cttggcacccttagaagcaatcttcagaaaatcaaggaaacgaaaagtgatgccgtaagt 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32069210 cttggcacccttagaagcaatcttcagaaaatcaaggaaacgaaaagtgatgccgtaagt 32069269
Query: 577 gctgctaacaccaataacccagagaagaacatgcgagtcactaaaaacaaaccaagggat 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32069270 gctgctaacaccaataacccagagaagaacatgcgagtcactaaaaacaaaccaagggat 32069329
Query: 637 ccacggtcagcacattcagagccagatgatgatgttagtgtggaggaagacaagcaagaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32069330 ccacggtcagcacattcagagccagatgatgatgttagtgtggaggaagacaagcaagaa 32069389
Query: 697 aaggcaaataaaatacaaacagccctccaggtgactgcgccgcaagaggaactggaaacg 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32069390 aaggcaaataaaatacaaacagccctccaggtgactgcgccgcaagaggaactggaaacg 32069449
Query: 757 ccggagaaggaggatgccacacttcagaaagcgcggaccaagccacagccaggcggcact 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32069450 ccggagaaggaggatgccacacttcagaaagcgcggaccaagccacagccaggcggcact 32069509
Query: 817 caggagaaaagtgagaaggacgaggaagaaagagaaaataagagtgtagatgaggaggaa 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32069510 caggagaaaagtgagaaggacgaggaagaaagagaaaataagagtgtagatgaggaggaa 32069569
Query: 877 gaactgatgcgagtataccagctccaggtagctgaagaaatggcaaaggagattaagaag 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32069570 gaactgatgcgagtataccagctccaggtagctgaagaaatggcaaaggagattaagaag 32069629
Query: 937 aaaatcagaaagaaactcaaggagcagctaacttactttccctcagatacttcattgcat 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32069630 aaaatcagaaagaaactcaaggagcagctaacttactttccctcagatacttcattgcat 32069689
Query: 997 gctgacaaattgagcggt 1014
||||||||||||||||||
Sbjct: 32069690 gctgacaaattgagcggt 32069707
Score = 502 bits (253), Expect = e-139
Identities = 259/261 (99%)
Strand = Plus / Plus
Query: 1 ccaggcatggccgcggtccaggcagcaagcgatggccgcttcggttgccatggggacggc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32048940 ccaggcagggccgcggtccaggcagcaagcgatggccgcttcggttgccatggggacggc 32048999
Query: 61 ggcgtaggcaggggctgacgtcagagggtggctagctgcccgcactgcggcacccagcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32049000 ggcgtaggcaggggctgacgtcagagggtggctagctgcccgcactgcggcacccagcgg 32049059
Query: 121 gttctcagagcccgggtggctggcggctggggcggctgcgcggccgcctcactccccgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32049060 gttctcagagcccgggtggctggcggctggggcggctgcgcggccgcctcactccccgcc 32049119
Query: 181 cgccccgcctgggctctttttccgatcccggggttggcttcggcgggaccggcagttggc 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 32049120 cgccccgcctgggctctttttccgatcccgggtttggcttcggcgggaccggcagttggc 32049179
Query: 241 tgctctgcgcccttttctccg 261
|||||||||||||||||||||
Sbjct: 32049180 tgctctgcgcccttttctccg 32049200
Score = 232 bits (117), Expect = 4e-58
Identities = 141/149 (94%)
Strand = Plus / Plus
Query: 1069 agtacattgatcatctctgatgacccaactgaaggcgaacaaaagaaatctctagttgga 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32072393 agtacattgatcatctctgatgacccaactgaaggcgaacaaaagaaatctctagttgga 32072452
Query: 1129 acagttacttcagagtctcgtcaagatgatgaagttaactcagtggaaccaaatgtagat 1188
||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct: 32072453 acagttacttcagagtctcgtcaagatgatgaaataaactcagtggaacaaaatgtagat 32072512
Query: 1189 gaccacttgcaagaagacccaaaatccaa 1217
|| || ||||||| ||| ||||||||||
Sbjct: 32072513 aacaacatgcaagaggacacaaaatccaa 32072541
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 391 gttgaaagtgaagccacagtggagaccaaagttcgtgttgaggagttgcttaaggcccac 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32056602 gttgaaagtgaagccacagtggagaccaaagttcgtgttgaggagttgcttaaggcccac 32056661
Query: 451 aatgatctaatacgt 465
|||||||||||||||
Sbjct: 32056662 aatgatctaatacgt 32056676
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 322 aggatcctgtttgagtcaatactttaccctataactcaatgttctccataaagctgagat 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32054760 aggatcctgtttgagtcaatactttaccctataactcaatgttctccataaagctgagat 32054819
Query: 382 atgcccacgg 391
||||||||||
Sbjct: 32054820 atgcccacgg 32054829
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 261 ggtgacaacctggtgctgaatcttgaacctgtgaaatgccttcttaattacatctgagaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32049577 ggtgacaacctggtgctgaatcttgaacctgtgaaatgccttcttaattacatctgagaa 32049636
Query: 321 aagg 324
||||
Sbjct: 32049637 aagg 32049640
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,131,464
Number of extensions: 318
Number of successful extensions: 318
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 6
Length of query: 1237
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1216
Effective length of database: 2,808,413,156
Effective search space: 3415030397696
Effective search space used: 3415030397696
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)