Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007845
(1516 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_976234.1| neuromodulin [Bos taurus]. 255 6e-68
Alignment gi|XP_002702458.1| PREDICTED: hypothetical protein [Bos taurus]. 124 5e-33
Alignment gi|XP_002684803.1| PREDICTED: hypothetical protein [Bos taurus]. 124 5e-33
>ref|NP_976234.1| neuromodulin [Bos taurus].
Length = 242
Score = 255 bits (652), Expect = 6e-68
Identities = 150/244 (61%), Positives = 153/244 (62%), Gaps = 1/244 (0%)
Frame = +2
Query: 161 MLCCMRRTKQVEKNDEDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLXXXXXXXXX 340
MLCCMRRTKQVEKNDEDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKL
Sbjct: 1 MLCCMRRTKQVEKNDEDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLKGEKKGDAP 60
Query: 341 XXXXXXXXXXXXXVADGPXXXXXXXXXXXXXXXXXXXXXXXXX-KAGDTPSEEKKXXXXX 517
VA+G KAG+TPSEEKK
Sbjct: 61 AAEAEANEKDEAAVAEGTEKKEGEGSTPAEAAPGAGPKPEEKTGKAGETPSEEKKGEGAP 120
Query: 518 XXXXXXXXXXXXXXSEEKPGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVXXXXXX 697
SEEK GSAETESATKASTDNSPSSKAEDAPAKEEPKQADV
Sbjct: 121 DAATEQAAPQAPALSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTA 180
Query: 698 XXXXXXXXXXXXXXXKATAQPPTETAESSQAEEKIEAVDETKPKESARQDEGKGEEREAD 877
ATAQPPTETAESSQAEEKIEAVDETKPK+SARQDEGKGEEREAD
Sbjct: 181 AAATAPAAEDAAAM--ATAQPPTETAESSQAEEKIEAVDETKPKDSARQDEGKGEEREAD 238
Query: 878 QEHA 889
QEHA
Sbjct: 239 QEHA 242
>ref|XP_002702458.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 347
Score = 124 bits (312), Expect(2) = 5e-33
Identities = 67/93 (72%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
Frame = -1
Query: 505 PLLLLGRS-VXXXXXXXXXXXXGWGRFSGSGTFALLLLRAISDGRFILLIGLRLSGWGIT 329
PLLLLGRS WGRF SG F+LLLLRA DG FIL I LRL GWGIT
Sbjct: 190 PLLLLGRSFAGFAGLLLRLGAGAWGRFRRSGAFSLLLLRAFRDGGFILFICLRLGGWGIT 249
Query: 328 LLLSFELFPRYVSTEASLNFGCGLMSFIFWFDA 230
LLLSFELFPRYVSTEASLNFG GLMSFIFWFDA
Sbjct: 250 LLLSFELFPRYVSTEASLNFGRGLMSFIFWFDA 282
Score = 36.2 bits (82), Expect(2) = 5e-33
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -3
Query: 191 PVWFFSYSTAWLYR 150
PVWFF+YSTAWLYR
Sbjct: 299 PVWFFAYSTAWLYR 312
>ref|XP_002684803.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 265
Score = 124 bits (312), Expect(2) = 5e-33
Identities = 67/93 (72%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
Frame = -1
Query: 505 PLLLLGRS-VXXXXXXXXXXXXGWGRFSGSGTFALLLLRAISDGRFILLIGLRLSGWGIT 329
PLLLLGRS WGRF SG F+LLLLRA DG FIL I LRL GWGIT
Sbjct: 108 PLLLLGRSFAGFAGLLLRLGAGAWGRFRRSGAFSLLLLRAFRDGGFILFICLRLGGWGIT 167
Query: 328 LLLSFELFPRYVSTEASLNFGCGLMSFIFWFDA 230
LLLSFELFPRYVSTEASLNFG GLMSFIFWFDA
Sbjct: 168 LLLSFELFPRYVSTEASLNFGRGLMSFIFWFDA 200
Score = 36.2 bits (82), Expect(2) = 5e-33
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -3
Query: 191 PVWFFSYSTAWLYR 150
PVWFF+YSTAWLYR
Sbjct: 217 PVWFFAYSTAWLYR 230
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,307,294
Number of extensions: 920903
Number of successful extensions: 3275
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3243
Number of HSP's successfully gapped: 6
Length of query: 505
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 398
Effective length of database: 14,140,958
Effective search space: 5628101284
Effective search space used: 5628101284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007845
(1516 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535747.1| PREDICTED: similar to Neuromodulin (Axonal memb... 265 7e-71
>ref|XP_535747.1| PREDICTED: similar to Neuromodulin (Axonal membrane protein GAP-43)
(Growth associated protein 43) (PP46) (Neural
phosphoprotein B-50) [Canis familiaris].
Length = 243
Score = 265 bits (678), Expect = 7e-71
Identities = 151/243 (62%), Positives = 153/243 (62%)
Frame = +2
Query: 161 MLCCMRRTKQVEKNDEDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLXXXXXXXXX 340
MLCCMRRTKQVEKNDEDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKL
Sbjct: 1 MLCCMRRTKQVEKNDEDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLKGEKKGDAQ 60
Query: 341 XXXXXXXXXXXXXVADGPXXXXXXXXXXXXXXXXXXXXXXXXXKAGDTPSEEKKXXXXXX 520
VADG KAG+TPSEEKK
Sbjct: 61 AAEAEAKEKDEAPVADGLEKKEGEGATPSEAAPASGPKPEEPGKAGETPSEEKKGEGAPD 120
Query: 521 XXXXXXXXXXXXXSEEKPGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVXXXXXXX 700
SEEK GSAETESATKASTDNSPSSKAEDAPAKEEPKQADV
Sbjct: 121 AATEQGAPQAPAPSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAA 180
Query: 701 XXXXXXXXXXXXXXKATAQPPTETAESSQAEEKIEAVDETKPKESARQDEGKGEEREADQ 880
KATAQPPT+ AESSQAEEKIEAVDETKPKESARQDEGKGEEREADQ
Sbjct: 181 AAAATTPAAEDAAAKATAQPPTDAAESSQAEEKIEAVDETKPKESARQDEGKGEEREADQ 240
Query: 881 EHA 889
EHA
Sbjct: 241 EHA 243
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,326,865
Number of extensions: 836384
Number of successful extensions: 3287
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3273
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 398
Effective length of database: 15,307,552
Effective search space: 6092405696
Effective search space used: 6092405696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007845
(1516 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358849.1| PREDICTED: neuromodulin-like [Sus scrofa]. 277 1e-74
>ref|XP_003358849.1| PREDICTED: neuromodulin-like [Sus scrofa].
Length = 243
Score = 277 bits (708), Expect = 1e-74
Identities = 156/243 (64%), Positives = 156/243 (64%)
Frame = +2
Query: 161 MLCCMRRTKQVEKNDEDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLXXXXXXXXX 340
MLCCMRRTKQVEKNDEDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKL
Sbjct: 1 MLCCMRRTKQVEKNDEDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLKGEKKGDAP 60
Query: 341 XXXXXXXXXXXXXVADGPXXXXXXXXXXXXXXXXXXXXXXXXXKAGDTPSEEKKXXXXXX 520
VADGP KAGDTPSEEKK
Sbjct: 61 AAEAEANEKDEAPVADGPEKKEGEGATPAEAAPATGPKAEEAGKAGDTPSEEKKGEGAPD 120
Query: 521 XXXXXXXXXXXXXSEEKPGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVXXXXXXX 700
SEEKPGSAETESATKASTDNSPSSKAEDAPAKEEPKQADV
Sbjct: 121 AAAEQAAPQAPAPSEEKPGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAA 180
Query: 701 XXXXXXXXXXXXXXKATAQPPTETAESSQAEEKIEAVDETKPKESARQDEGKGEEREADQ 880
KATAQPPTETAESSQAEEKIEAVDETKPKESARQDEGKGEEREADQ
Sbjct: 181 AAAATTPAAEDAAAKATAQPPTETAESSQAEEKIEAVDETKPKESARQDEGKGEEREADQ 240
Query: 881 EHA 889
EHA
Sbjct: 241 EHA 243
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,087,222
Number of extensions: 752608
Number of successful extensions: 2085
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2070
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 402
Effective length of database: 8,779,541
Effective search space: 3529375482
Effective search space used: 3529375482
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007845
(1516 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032109.1| neuromodulin [Mus musculus]. 231 1e-60
>ref|NP_032109.1| neuromodulin [Mus musculus].
Length = 227
Score = 231 bits (588), Expect = 1e-60
Identities = 139/243 (57%), Positives = 144/243 (59%)
Frame = +2
Query: 161 MLCCMRRTKQVEKNDEDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLXXXXXXXXX 340
MLCCMRRTKQVEKNDEDQKIEQDG+KPEDKAHKAATKIQASFRGHITRKKL
Sbjct: 1 MLCCMRRTKQVEKNDEDQKIEQDGVKPEDKAHKAATKIQASFRGHITRKKLKGEKKGDAP 60
Query: 341 XXXXXXXXXXXXXVADGPXXXXXXXXXXXXXXXXXXXXXXXXXKAGDTPSEEKKXXXXXX 520
VADG KAGD PSEEKK
Sbjct: 61 AAEAEAKEKDDAPVADGVEKKEGDGSATTDAAPATSPKAEEPSKAGDAPSEEKK------ 114
Query: 521 XXXXXXXXXXXXXSEEKPGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVXXXXXXX 700
SEEK GSAETESA KA+TDNSPSSKAED PAKEEPKQADV
Sbjct: 115 ------GEGDAAPSEEKAGSAETESAAKATTDNSPSSKAEDGPAKEEPKQADV---PAAV 165
Query: 701 XXXXXXXXXXXXXXKATAQPPTETAESSQAEEKIEAVDETKPKESARQDEGKGEEREADQ 880
AQPPTETAESSQAEE+ +AVDE KPKESARQDEGK E+ EADQ
Sbjct: 166 TDAAATTPAAEDAATKAAQPPTETAESSQAEEEKDAVDEAKPKESARQDEGK-EDPEADQ 224
Query: 881 EHA 889
EHA
Sbjct: 225 EHA 227
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,114,088
Number of extensions: 695747
Number of successful extensions: 2854
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2826
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 399
Effective length of database: 12,433,743
Effective search space: 4961063457
Effective search space used: 4961063457
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007845
(1516 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002036.1| neuromodulin isoform 2 [Homo sapiens]. 246 4e-65
Alignment gi|NP_001123536.1| neuromodulin isoform 1 [Homo sapiens]. 224 1e-58
>ref|NP_002036.1| neuromodulin isoform 2 [Homo sapiens].
Length = 238
Score = 246 bits (628), Expect = 4e-65
Identities = 148/243 (60%), Positives = 150/243 (61%)
Frame = +2
Query: 161 MLCCMRRTKQVEKNDEDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLXXXXXXXXX 340
MLCCMRRTKQVEKND+DQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKL
Sbjct: 1 MLCCMRRTKQVEKNDDDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLKGEKKDDVQ 60
Query: 341 XXXXXXXXXXXXXVADGPXXXXXXXXXXXXXXXXXXXXXXXXXKAGDTPSEEKKXXXXXX 520
VADG KAG+TPSEEKK
Sbjct: 61 AAEAEANKKDEAPVADG-VEKKGEGTTTAEAAPATGSKPDEPGKAGETPSEEKKGEGDAA 119
Query: 521 XXXXXXXXXXXXXSEEKPGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVXXXXXXX 700
SEEK GSAETESATKASTDNSPSSKAEDAPAKEEPKQADV
Sbjct: 120 TEQAAPQAPAS--SEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAA 177
Query: 701 XXXXXXXXXXXXXXKATAQPPTETAESSQAEEKIEAVDETKPKESARQDEGKGEEREADQ 880
KATAQPPTET ESSQAEE IEAVDETKPKESARQDEGK EE EADQ
Sbjct: 178 AATTPAAEDAAA--KATAQPPTETGESSQAEENIEAVDETKPKESARQDEGKEEEPEADQ 235
Query: 881 EHA 889
EHA
Sbjct: 236 EHA 238
>ref|NP_001123536.1| neuromodulin isoform 1 [Homo sapiens].
Length = 274
Score = 224 bits (572), Expect = 1e-58
Identities = 138/234 (58%), Positives = 141/234 (60%)
Frame = +2
Query: 188 QVEKNDEDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLXXXXXXXXXXXXXXXXXX 367
+VEKND+DQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKL
Sbjct: 46 RVEKNDDDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLKGEKKDDVQAAEAEANKK 105
Query: 368 XXXXVADGPXXXXXXXXXXXXXXXXXXXXXXXXXKAGDTPSEEKKXXXXXXXXXXXXXXX 547
VADG KAG+TPSEEKK
Sbjct: 106 DEAPVADG-VEKKGEGTTTAEAAPATGSKPDEPGKAGETPSEEKKGEGDAATEQAAPQAP 164
Query: 548 XXXXSEEKPGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVXXXXXXXXXXXXXXXX 727
SEEK GSAETESATKASTDNSPSSKAEDAPAKEEPKQADV
Sbjct: 165 AS--SEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAATTPAAED 222
Query: 728 XXXXXKATAQPPTETAESSQAEEKIEAVDETKPKESARQDEGKGEEREADQEHA 889
KATAQPPTET ESSQAEE IEAVDETKPKESARQDEGK EE EADQEHA
Sbjct: 223 AAA--KATAQPPTETGESSQAEENIEAVDETKPKESARQDEGKEEEPEADQEHA 274
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,641,486
Number of extensions: 814899
Number of successful extensions: 3316
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3301
Number of HSP's successfully gapped: 4
Length of query: 505
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 398
Effective length of database: 14,770,016
Effective search space: 5878466368
Effective search space used: 5878466368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007845
(1516 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 969 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 969 bits (489), Expect = 0.0
Identities = 533/555 (96%)
Strand = Plus / Minus
Query: 802 agaagctgtagacgaaaccaaacctaaggaaagtgcccggcaggatgagggtaaaggaga 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153843529 agaagctgtagacgaaaccaaacctaaggaaagtgcccggcaggatgagggtaaaggaga 153843470
Query: 862 agaacgcgaggcggaccaagaacatgcctgaactttaagaaatggctttccacgtcccac 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153843469 agaacgcgaggcggaccaagaacatgcctgaactttaagaaatggctttccacgtcccac 153843410
Query: 922 tctcccctctcctgagccctgtctctccccgccctcttctcaactccactctgaagtttc 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153843409 tctcccctctcctgagccctgtctctccccgccctcttctcaactccactctgaagtttc 153843350
Query: 982 cctccctgtcctgctcacatctgtgagtctgtcctctcccacccactagccctctttctc 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153843349 cctccctgtcctgctcacatctgtgagtctgtcctctcccacccactagccctctttctc 153843290
Query: 1042 tctgtgtggcaaacnnnnnnnnnnnnnnnnnnnnnncaggaaagatcccaagtcaaacag 1101
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 153843289 tctgtgtggcaaacatttaaaaaaaaaaaaaaaaagcaggaaagatcccaagtcaaacag 153843230
Query: 1102 tgtggcttaaacattttttgtttcttggtgttgttatggcgagtttttggtaatgatgat 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153843229 tgtggcttaaacattttttgtttcttggtgttgttatggcgagtttttggtaatgatgat 153843170
Query: 1162 ccaatcattttgggaaattcttgcactgtatccaagttttttgatctggtgcgtgtggcc 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153843169 ccaatcattttgggaaattcttgcactgtatccaagttttttgatctggtgcgtgtggcc 153843110
Query: 1222 ctgtgggagtccactttcctatctctctctgttccaagtgtgtgtgcaatgttccgttca 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153843109 ctgtgggagtccactttcctatctctctctgttccaagtgtgtgtgcaatgttccgttca 153843050
Query: 1282 tccgaggagtccaaaatagcaagtgaattcaaaaaccacttttcttttcctccttttcaa 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153843049 tccgaggagtccaaaatagcaagtgaattcaaaaaccacttttcttttcctccttttcaa 153842990
Query: 1342 tgtgatggaatgaac 1356
|||||||||||||||
Sbjct: 153842989 tgtgatggaatgaac 153842975
Score = 950 bits (479), Expect = 0.0
Identities = 479/479 (100%)
Strand = Plus / Minus
Query: 202 tgatgaggaccaaaagattgaacaagatggcatcaaaccagaagataaagctcataaggc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153883655 tgatgaggaccaaaagattgaacaagatggcatcaaaccagaagataaagctcataaggc 153883596
Query: 262 cgcaaccaaaattcaggctagcttccgtggacacataacgaggaaaaagctcaaaggaga 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153883595 cgcaaccaaaattcaggctagcttccgtggacacataacgaggaaaaagctcaaaggaga 153883536
Query: 322 gaagaagggtgatgccccagccgctgaggcggaggccaatgagaaggatgaagcgcccgt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153883535 gaagaagggtgatgccccagccgctgaggcggaggccaatgagaaggatgaagcgcccgt 153883476
Query: 382 cgctgatggccctgagaagaaggagggcgaaggtgccactcccgctgaagcggccccagc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153883475 cgctgatggccctgagaagaaggagggcgaaggtgccactcccgctgaagcggccccagc 153883416
Query: 442 cactggccccaaggctgaggaggccggcaaagctggcgacactccttccgaggagaagaa 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153883415 cactggccccaaggctgaggaggccggcaaagctggcgacactccttccgaggagaagaa 153883356
Query: 502 gggggagggcgcccccgacgctgccgctgagcaggcagccccccaggctcctgccccctc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153883355 gggggagggcgcccccgacgctgccgctgagcaggcagccccccaggctcctgccccctc 153883296
Query: 562 cgaggagaagccaggctctgctgagacagaaagtgccactaaagcttccactgacaactc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153883295 cgaggagaagccaggctctgctgagacagaaagtgccactaaagcttccactgacaactc 153883236
Query: 622 gccgtcctccaaggccgaagacgcgccagccaaggaggagcctaaacaagccgacgtgc 680
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153883235 gccgtcctccaaggccgaagacgcgccagccaaggaggagcctaaacaagccgacgtgc 153883177
Score = 145 bits (73), Expect = 8e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 1415 gtgccaattagcgtaacttgcggctctaaggctcctttttcaatctgaatatgaataaac 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153842916 gtgccaattagcgtaacttgcggctctaaggctcctttttcaatctgaatatgaataaac 153842857
Query: 1475 catgagagtaatc 1487
|||||||||||||
Sbjct: 153842856 catgagagtaatc 153842844
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 742 caaggcgacagcccagcctccaacggagactgcggagagcagccaagccgaggagaagat 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153883115 caaggcgacagcccagcctccaacggagactgcggagagcagccaagccgaggagaagat 153883056
Query: 802 ag 803
||
Sbjct: 153883055 ag 153883054
Score = 83.8 bits (42), Expect = 3e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 151 cgatacaaccatgctgtgctgtatgagaagaaccaaacaggt 192
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153937327 cgatacaaccatgctgtgctgtatgagaagaaccaaacaggt 153937286
Score = 69.9 bits (35), Expect = 4e-09
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 42 cacgctagcgcgagagagcgagtgagcaagcgagc 76
|||||||||||||||||||||||||||||||||||
Sbjct: 153937436 cacgctagcgcgagagagcgagtgagcaagcgagc 153937402
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,051,021
Number of extensions: 362
Number of successful extensions: 362
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 7
Length of query: 1516
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1495
Effective length of database: 2,808,413,156
Effective search space: 4198577668220
Effective search space used: 4198577668220
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)