Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007851
(1138 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014959.1| dnaJ homolog subfamily B member 5 [Bos tauru... 481 e-147
Alignment gi|NP_001039968.1| dnaJ homolog subfamily B member 4 [Bos tauru... 323 3e-96
Alignment gi|NP_001028935.1| dnaJ homolog subfamily B member 1 [Bos tauru... 315 2e-94
Alignment gi|NP_001029708.1| dnaJ homolog subfamily B member 13 [Bos taur... 210 3e-55
Alignment gi|NP_001035581.1| dnaJ homolog subfamily A member 2 [Bos tauru... 129 6e-30
Alignment gi|NP_001015637.1| dnaJ homolog subfamily A member 1 [Bos tauru... 126 2e-29
Alignment gi|NP_001095590.2| DnaJ (Hsp40) homolog, subfamily A, member 4 ... 120 2e-29
Alignment gi|XP_002700026.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily A... 125 4e-29
Alignment gi|XP_001252102.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily A... 123 1e-28
Alignment gi|NP_776957.2| dnaJ homolog subfamily B member 6 [Bos taurus]. 117 1e-26
>ref|NP_001014959.1| dnaJ homolog subfamily B member 5 [Bos taurus].
Length = 348
Score = 481 bits (1238), Expect(2) = e-147
Identities = 234/259 (90%), Positives = 234/259 (90%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK
Sbjct: 1 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 626
RGLYDQYGEEGLKT FHYTFHGDPHATFASFFGGSNPFDIFFASSRS RP
Sbjct: 61 RGLYDQYGEEGLKTGGGSSGGSSGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSARP 120
Query: 627 FSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 806
FSGF FGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE
Sbjct: 121 FSGFDPDDMDVDEDDDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 180
Query: 807 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 986
EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA
Sbjct: 181 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 240
Query: 987 DIVFVLKDKPHAHFRRDGT 1043
DIVFVLKDKPHAHFRRDGT
Sbjct: 241 DIVFVLKDKPHAHFRRDGT 259
Score = 62.0 bits (149), Expect(2) = e-147
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPLP 1138
+VLYSALIS +EALCGCTVNIPTIDGRVIPLP
Sbjct: 260 NVLYSALISLKEALCGCTVNIPTIDGRVIPLP 291
>ref|NP_001039968.1| dnaJ homolog subfamily B member 4 [Bos taurus].
Length = 337
Score = 323 bits (827), Expect(2) = 3e-96
Identities = 164/259 (63%), Positives = 188/259 (72%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY ILGI GA++++IKKAYRK AL++HPDKNK P AEE+FKE+AEAY+VLSDPKK
Sbjct: 1 MGKDYYCILGIEKGASDEDIKKAYRKQALRFHPDKNKSPQAEERFKEVAEAYEVLSDPKK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 626
R +YDQ+GEEGLK F YTFHGDPHATFA+FFGGSNPF+IFF
Sbjct: 61 REIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRR----- 115
Query: 627 FSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 806
G FGAFG F NG R + P R QDPPV+HELRVSLE
Sbjct: 116 -MGGGRDSDEMEVDGDPFGAFG-FSMNGYPRD----RNSVGPSRLKQDPPVIHELRVSLE 169
Query: 807 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 986
EIY G TKRMKI+R+RLNPDGR+ RTEDKIL I IK+GWKEGTKITFP+EGD TP +IPA
Sbjct: 170 EIYSGCTKRMKISRKRLNPDGRSYRTEDKILTIEIKKGWKEGTKITFPREGDETPTSIPA 229
Query: 987 DIVFVLKDKPHAHFRRDGT 1043
DIVFV+KDK H F+RDG+
Sbjct: 230 DIVFVIKDKDHPKFKRDGS 248
Score = 48.9 bits (115), Expect(2) = 3e-96
Identities = 18/31 (58%), Positives = 28/31 (90%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
+++Y+A IS +EALCGC++N+PT+DGR IP+
Sbjct: 249 NIIYTAKISLREALCGCSINVPTMDGRTIPM 279
>ref|NP_001028935.1| dnaJ homolog subfamily B member 1 [Bos taurus].
Length = 340
Score = 315 bits (807), Expect(2) = 2e-94
Identities = 161/269 (59%), Positives = 188/269 (69%), Gaps = 10/269 (3%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY+ LG+ GA+++EIK+AYR+ AL+YHPDKNKEP AEEKFKEIAEAYDVLSDP+K
Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 447 RGLYDQYGEEGLK----TXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSR 614
R ++D+YGEEGLK + F YTFHGDPHA FA FFGG NPFD FF
Sbjct: 61 REIFDRYGEEGLKGSGPSGGSSGGTNGTSFSYTFHGDPHAMFAEFFGGRNPFDNFFGQRN 120
Query: 615 STR------PFSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPP 776
PFSGF G GF ++ G R + P RK QDPP
Sbjct: 121 GEEGMDIDDPFSGFP---------------MGMGGFTNMNFGRSRPAQE--PTRKKQDPP 163
Query: 777 VVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKE 956
V H+LRVSLEEIY G TK+MKI+ +RLNPDG+++R EDKIL I +KRGWKEGTKITFPKE
Sbjct: 164 VTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKRGWKEGTKITFPKE 223
Query: 957 GDATPDNIPADIVFVLKDKPHAHFRRDGT 1043
GD T +NIPADIVFVLKDKPH F+RDG+
Sbjct: 224 GDQTSNNIPADIVFVLKDKPHNIFKRDGS 252
Score = 50.1 bits (118), Expect(2) = 2e-94
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 1046 VLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
V+Y A IS +EALCGCTVN+PT+DGR IP+
Sbjct: 254 VIYPARISLREALCGCTVNVPTLDGRTIPV 283
>ref|NP_001029708.1| dnaJ homolog subfamily B member 13 [Bos taurus].
Length = 316
Score = 210 bits (534), Expect(2) = 3e-55
Identities = 115/260 (44%), Positives = 155/260 (59%), Gaps = 3/260 (1%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MG+DYY +L I + + +IK AYRK+ALK HP ++ EP A E F++IAEAYDVLSDP K
Sbjct: 1 MGQDYYSVLQITRNSEDAQIKNAYRKLALKNHPLRSIEPGAVETFRQIAEAYDVLSDPVK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFH--YTFHGDPHATFASFFGGSNPFDIFFASSRST 620
RG+YD++GEEGLK + Y FHG+P F FFGG NPF+ FF +
Sbjct: 61 RGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPEKVFHEFFGGDNPFNEFFDAE--- 117
Query: 621 RPFSGFXXXXXXXXXXXXXFGAFGRFGFNGL-SRGPRRAPEPLYPRRKVQDPPVVHELRV 797
G F GL RG ++ QDPP+ +L +
Sbjct: 118 --------------------GNEADLKFGGLRGRGVKK-----------QDPPIERDLYL 146
Query: 798 SLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDN 977
SLE+++ G TK++KI+RR LN DG + +DKIL I +K GW++GT+ITF KEGD P+
Sbjct: 147 SLEDLFFGCTKKIKISRRVLNDDGYSSTIKDKILTIDVKPGWRQGTRITFEKEGDQGPNI 206
Query: 978 IPADIVFVLKDKPHAHFRRD 1037
IPADI+F++K+K H FRR+
Sbjct: 207 IPADIIFIVKEKLHPRFRRE 226
Score = 24.6 bits (52), Expect(2) = 3e-55
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 1076 EALCGCTVNIPTIDGRVIPLP 1138
+AL CTV + T+D R++ +P
Sbjct: 240 KALTCCTVEVKTLDDRLLNIP 260
>ref|NP_001035581.1| dnaJ homolog subfamily A member 2 [Bos taurus].
Length = 412
Score = 129 bits (323), Expect(2) = 6e-30
Identities = 97/314 (30%), Positives = 135/314 (42%), Gaps = 61/314 (19%)
Frame = +3
Query: 282 YKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYD 461
Y ILG+P GA+E+E+KKAYRK+A +YHPDKN PNA +KFKEI+ AY+VLS+P+KR LYD
Sbjct: 10 YDILGVPPGASENELKKAYRKLAKEYHPDKN--PNAGDKFKEISFAYEVLSNPEKRELYD 67
Query: 462 QYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFX 641
+YGE+GL+ GG DIF + F G
Sbjct: 68 RYGEQGLREGSG-------------------------GGGGMDDIF------SHIFGG-- 94
Query: 642 XXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHG 821
G F G SR RR E + +H L+VSLE++Y+G
Sbjct: 95 -------------GLFSFMGNQSRSRNGRRRGEDM-----------MHPLKVSLEDLYNG 130
Query: 822 STKRMKITRRRL-----------------------------------------------N 860
T ++++++ L N
Sbjct: 131 KTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCN 190
Query: 861 PDGRTVRTED--------------KILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVF 998
+G + +D KIL + + +G K G +ITF E D P P DIV
Sbjct: 191 GEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVL 250
Query: 999 VLKDKPHAHFRRDG 1040
+L++K H F+RDG
Sbjct: 251 LLQEKEHEVFQRDG 264
Score = 21.2 bits (43), Expect(2) = 6e-30
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVI 1129
H+ Y I EALCG +DGR I
Sbjct: 268 HMTYK--IGLVEALCGFQFTFKHLDGRQI 294
>ref|NP_001015637.1| dnaJ homolog subfamily A member 1 [Bos taurus].
Length = 397
Score = 126 bits (316), Expect(2) = 2e-29
Identities = 93/263 (35%), Positives = 126/263 (47%), Gaps = 9/263 (3%)
Frame = +3
Query: 279 YYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLY 458
YY +LG+ A ++E+KKAYRK+ALKYHPDKN PN EKFK+I++AY+VLSD KKR LY
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSDAKKRELY 64
Query: 459 DQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPF-------DIFFASSRS 617
D+ GE+ +K G P F FFGG ++ + +
Sbjct: 65 DKGGEQAIKEGGAGGG----------FGSPMDIFDMFFGGGGRMHRERRGKNVVHQLTVT 114
Query: 618 TRPFSGFXXXXXXXXXXXXXFGAFGRFGFNG-LSRGPRRAPEPLYPRRKVQDPPVVHELR 794
GR G G + P + R P +V +++
Sbjct: 115 LEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQ 174
Query: 795 -VSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATP 971
V +E HG +R+ R + +GR + E KIL + I +G K+G KITF EGD P
Sbjct: 175 SVCMECHCHG--ERITPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEP 232
Query: 972 DNIPADIVFVLKDKPHAHFRRDG 1040
P DI+ VL K HA F R G
Sbjct: 233 GLEPGDIIIVLDQKDHAVFTRRG 255
Score = 22.3 bits (46), Expect(2) = 2e-29
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 1076 EALCGCTVNIPTIDGRVI 1129
EALCG I T+D R I
Sbjct: 268 EALCGFQKPISTLDNRTI 285
>ref|NP_001095590.2| DnaJ (Hsp40) homolog, subfamily A, member 4 [Bos taurus].
Length = 426
Score = 120 bits (302), Expect(2) = 2e-29
Identities = 93/283 (32%), Positives = 130/283 (45%), Gaps = 20/283 (7%)
Frame = +3
Query: 252 GPVAVMGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVL 431
G V YY ILG+ A+ +EIKKAYRK+ALKYHPDKN P+ EKFK I++AY+VL
Sbjct: 27 GDKMVKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKN--PDEGEKFKLISQAYEVL 84
Query: 432 SDPKKRGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASS 611
SDPKKR +YDQ GE+ +K G P SF + FD+FF
Sbjct: 85 SDPKKRDIYDQGGEQAIKEGGS--------------GSP-----SFSSPMDIFDMFFGGG 125
Query: 612 -RSTRPFSGFXXXXXXXXXXXXXFGAFGRF-------------GFNGLSRGPRRAPEPLY 749
R R G + + G G + P +
Sbjct: 126 GRMARERRGKNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCP--VC 183
Query: 750 PRRKVQ------DPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVI 911
R +Q P +V +++ E G +R+ R + +G V E KI+ + +
Sbjct: 184 KGRGMQIHIQQIGPGMVQQIQTVCIEC-KGQGERINPKDRCESCNGAKVIREKKIIEVHV 242
Query: 912 KRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDG 1040
++G K+G KI F EGD P+ P D++ VL K H+ F+R G
Sbjct: 243 EKGMKDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRG 285
Score = 27.3 bits (59), Expect(2) = 2e-29
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 1034 RWHHVLYSALISPQEALCGCTVNIPTIDGRVI 1129
R H ++ I EALCG I T+D RV+
Sbjct: 284 RGHDLIMKMKIQLSEALCGFKKTIKTLDDRVL 315
>ref|XP_002700026.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily A, member 1-like [Bos
taurus].
Length = 397
Score = 125 bits (313), Expect(2) = 4e-29
Identities = 93/263 (35%), Positives = 123/263 (46%), Gaps = 9/263 (3%)
Frame = +3
Query: 279 YYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLY 458
YY +LG+ A ++E+KKAYRK+ALKYHPDKN PN EKFK+I++AY+VLSD KKR LY
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSDAKKRELY 64
Query: 459 DQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPF-------DIFFASSRS 617
D+ GE+ +K G P F FFGG ++ + +
Sbjct: 65 DKGGEQAIKEGGAGGG----------FGSPMDIFDMFFGGGGRMQRERRGKNVVHQLTVT 114
Query: 618 TRPFSGFXXXXXXXXXXXXXFGAFGRFGFNG-LSRGPRRAPEPLYPRRKVQDPPVVHELR 794
GR G G + P + R P +V +++
Sbjct: 115 LEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQ 174
Query: 795 -VSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATP 971
V +E HG K + N GR + E KIL + I +G K+G KITF EGD P
Sbjct: 175 SVCMECQGHGEQISPKDRCKSCN--GRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEP 232
Query: 972 DNIPADIVFVLKDKPHAHFRRDG 1040
P DI+ VL K HA F R G
Sbjct: 233 GLEPGDIIIVLDQKDHAVFTRRG 255
Score = 22.3 bits (46), Expect(2) = 4e-29
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 1076 EALCGCTVNIPTIDGRVI 1129
EALCG I T+D R I
Sbjct: 268 EALCGFQKPISTLDNRTI 285
>ref|XP_001252102.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily A, member 1 [Bos taurus].
Length = 397
Score = 123 bits (308), Expect(2) = 1e-28
Identities = 92/263 (34%), Positives = 123/263 (46%), Gaps = 9/263 (3%)
Frame = +3
Query: 279 YYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLY 458
YY +LG+ A ++E+KKAYRK+ALKYHPDKN PN EKFK+I++AY+VLS+ KKR LY
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSNAKKRELY 64
Query: 459 DQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPF-------DIFFASSRS 617
D+ GE+ +K G P F FFGG ++ + +
Sbjct: 65 DKGGEQAIKEGGAGGG----------FGSPMDIFDMFFGGGGRMQRERRGKNVVHQLTVT 114
Query: 618 TRPFSGFXXXXXXXXXXXXXFGAFGRFGFNG-LSRGPRRAPEPLYPRRKVQDPPVVHELR 794
GR G G + P + R P +V +++
Sbjct: 115 LEDLYNGATRKLAMQKSVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQ 174
Query: 795 -VSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATP 971
V +E HG K + N GR + E KIL + I +G K+G KITF EGD P
Sbjct: 175 SVCMECQGHGEQISPKDRCKSCN--GRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEP 232
Query: 972 DNIPADIVFVLKDKPHAHFRRDG 1040
P DI+ VL K HA F R G
Sbjct: 233 GLEPGDIIIVLDQKDHAVFTRRG 255
Score = 22.3 bits (46), Expect(2) = 1e-28
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 1076 EALCGCTVNIPTIDGRVI 1129
EALCG I T+D R I
Sbjct: 268 EALCGFQKPISTLDNRTI 285
>ref|NP_776957.2| dnaJ homolog subfamily B member 6 [Bos taurus].
Length = 242
Score = 117 bits (294), Expect = 1e-26
Identities = 69/171 (40%), Positives = 89/171 (52%), Gaps = 24/171 (14%)
Frame = +3
Query: 276 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKE--PNAEEKFKEIAEAYDVLSDPKKR 449
DYY++LG+ A+ ++IKKAYRK+ALK+HPDKN E AE KFK++AEAY+VLSD KKR
Sbjct: 3 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 62
Query: 450 GLYDQYGEEGLKTXXXXXXXXXXXFHYTF-HGDPHATFASFFGG---------SNPFDIF 599
+YD+YG+EGL F + F +P F FFGG +PF+ F
Sbjct: 63 DIYDRYGKEGLNGGGGGGSHFDSPFEFGFTFRNPEDVFREFFGGRDPFSFDFFEDPFEDF 122
Query: 600 FASSRSTR------------PFSGFXXXXXXXXXXXXXFGAFGRFGFNGLS 716
F R R FSGF F +FG G GL+
Sbjct: 123 FGHRRGPRGSRSRGTGSFFSTFSGFPSFGGAFPSFDAGFSSFGSLGHGGLT 173
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,887,835
Number of extensions: 1139754
Number of successful extensions: 5946
Number of sequences better than 1.0e-05: 54
Number of HSP's gapped: 5892
Number of HSP's successfully gapped: 68
Length of query: 379
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,240,222
Effective search space: 3916061050
Effective search space used: 3916061050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007851
(1138 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866030.1| PREDICTED: similar to DnaJ homolog subfamily B ... 602 0.0
Alignment gi|XP_531984.1| PREDICTED: similar to DnaJ homolog subfamily B ... 481 e-147
Alignment gi|XP_537106.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 321 6e-96
Alignment gi|XP_852900.1| PREDICTED: similar to DnaJ homolog subfamily B ... 313 1e-93
Alignment gi|XP_867677.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 308 5e-92
Alignment gi|XP_866492.1| PREDICTED: similar to DnaJ homolog subfamily B ... 308 7e-92
Alignment gi|XP_866013.1| PREDICTED: similar to DnaJ homolog subfamily B ... 254 9e-80
Alignment gi|XP_866478.1| PREDICTED: similar to DnaJ homolog subfamily B ... 264 7e-79
Alignment gi|XP_534013.1| PREDICTED: similar to testis spermatogenesis ap... 214 1e-56
Alignment gi|XP_533894.1| PREDICTED: similar to DnaJ homolog subfamily B ... 180 1e-53
>ref|XP_866030.1| PREDICTED: similar to DnaJ homolog subfamily B member 5 (Heat shock
protein Hsp40-3) (Heat shock protein cognate 40) (Hsc40)
(Hsp40-2) isoform 3 [Canis familiaris].
Length = 420
Score = 602 bits (1551), Expect(2) = 0.0
Identities = 293/318 (92%), Positives = 293/318 (92%)
Frame = +3
Query: 90 APPLQARGAFRSFPHFWGEDFLASLMFKIQLEPLKLRAWTLNGFVKFRNKETSAGPVAVM 269
APPLQARGAFRSFPHFWGEDFLASLMFKIQLEPLKLRAWTLNGFVKFRNKETSAGPVAVM
Sbjct: 14 APPLQARGAFRSFPHFWGEDFLASLMFKIQLEPLKLRAWTLNGFVKFRNKETSAGPVAVM 73
Query: 270 GKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKR 449
GKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKR
Sbjct: 74 GKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKR 133
Query: 450 GLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPF 629
GLYDQYGEEGLKT FHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPF
Sbjct: 134 GLYDQYGEEGLKTGGGSSGGSSGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPF 193
Query: 630 SGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEE 809
SGF FGAFGRFGFNGLSRGPRR PEPLYPRRKVQDPPVVHELRVSLEE
Sbjct: 194 SGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRPPEPLYPRRKVQDPPVVHELRVSLEE 253
Query: 810 IYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPAD 989
IYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPAD
Sbjct: 254 IYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPAD 313
Query: 990 IVFVLKDKPHAHFRRDGT 1043
IVFVLKDKPHAHFRRDGT
Sbjct: 314 IVFVLKDKPHAHFRRDGT 331
Score = 62.0 bits (149), Expect(2) = 0.0
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPLP 1138
+VLYSALIS +EALCGCTVNIPTIDGRVIPLP
Sbjct: 332 NVLYSALISLKEALCGCTVNIPTIDGRVIPLP 363
>ref|XP_531984.1| PREDICTED: similar to DnaJ homolog subfamily B member 5 (Heat shock
protein Hsp40-3) (Heat shock protein cognate 40) (Hsc40)
(Hsp40-2) isoform 1 [Canis familiaris].
Length = 348
Score = 481 bits (1238), Expect(2) = e-147
Identities = 234/259 (90%), Positives = 234/259 (90%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK
Sbjct: 1 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 626
RGLYDQYGEEGLKT FHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP
Sbjct: 61 RGLYDQYGEEGLKTGGGSSGGSSGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 120
Query: 627 FSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 806
FSGF FGAFGRFGFNGLSRGPRR PEPLYPRRKVQDPPVVHELRVSLE
Sbjct: 121 FSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRPPEPLYPRRKVQDPPVVHELRVSLE 180
Query: 807 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 986
EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA
Sbjct: 181 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 240
Query: 987 DIVFVLKDKPHAHFRRDGT 1043
DIVFVLKDKPHAHFRRDGT
Sbjct: 241 DIVFVLKDKPHAHFRRDGT 259
Score = 62.0 bits (149), Expect(2) = e-147
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPLP 1138
+VLYSALIS +EALCGCTVNIPTIDGRVIPLP
Sbjct: 260 NVLYSALISLKEALCGCTVNIPTIDGRVIPLP 291
>ref|XP_537106.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 4
isoform 1 [Canis familiaris].
Length = 337
Score = 321 bits (823), Expect(2) = 6e-96
Identities = 163/259 (62%), Positives = 188/259 (72%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY ILGI GA++++IKKAYRK ALK+HPDKNK P AEEKFKE+AEAY+VLSDPKK
Sbjct: 1 MGKDYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 626
R +YDQ+GEEGLK F YTFHGDPHATFA+FFGGSNPF+IFF
Sbjct: 61 REIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRR----- 115
Query: 627 FSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 806
G F AFG F NG R + P R QDPPV+HELRVSLE
Sbjct: 116 -MGGGRDSDEMEVDGDPFSAFG-FSMNGYPRD----RNSVGPSRIKQDPPVIHELRVSLE 169
Query: 807 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 986
EIY+G TKRMKI+R+RLNPDGR+ R+EDKIL I IK+GWKEGTKITFP+EGD TP +IPA
Sbjct: 170 EIYNGCTKRMKISRKRLNPDGRSYRSEDKILTIEIKKGWKEGTKITFPREGDETPTSIPA 229
Query: 987 DIVFVLKDKPHAHFRRDGT 1043
DIVF++KDK H F+RDG+
Sbjct: 230 DIVFIIKDKDHPKFKRDGS 248
Score = 49.3 bits (116), Expect(2) = 6e-96
Identities = 19/31 (61%), Positives = 28/31 (90%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
+++Y+A IS +EALCGC+VN+PT+DGR IP+
Sbjct: 249 NIIYTAKISLREALCGCSVNVPTMDGRTIPM 279
>ref|XP_852900.1| PREDICTED: similar to DnaJ homolog subfamily B member 1 (Heat shock
40 kDa protein 1) (Heat shock protein 40) (HSP40) (DnaJ
protein homolog 1) (HDJ-1) isoform 2 [Canis familiaris].
Length = 340
Score = 313 bits (803), Expect(2) = 1e-93
Identities = 160/269 (59%), Positives = 187/269 (69%), Gaps = 10/269 (3%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY+ LG+ GA+++EIK+AYR+ AL+YHPDKNKEP AEEKFKEIAEAYDVLSDP+K
Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 447 RGLYDQYGEEGLK----TXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSR 614
R ++D+YGEEGLK + F YTFHGDPHA FA FFGG NPFD FF
Sbjct: 61 REIFDRYGEEGLKGGGPSGGSSGGANGTSFSYTFHGDPHAMFAEFFGGRNPFDTFFGQRN 120
Query: 615 STR------PFSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPP 776
PFS F G GF ++ G R + P RK QDPP
Sbjct: 121 GEEGMDIDDPFSSFP---------------MGMGGFTNMNFGRSRPAQE--PTRKKQDPP 163
Query: 777 VVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKE 956
V H+LRVSLEEIY G TK+MKI+ +RLNPDG+++R EDKIL I +KRGWKEGTKITFPKE
Sbjct: 164 VTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKRGWKEGTKITFPKE 223
Query: 957 GDATPDNIPADIVFVLKDKPHAHFRRDGT 1043
GD T +NIPADIVFVLKDKPH F+RDG+
Sbjct: 224 GDQTSNNIPADIVFVLKDKPHNIFKRDGS 252
Score = 49.3 bits (116), Expect(2) = 1e-93
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 1046 VLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
V+Y A IS +EALCGCTVN+PT+DGR IP+
Sbjct: 254 VIYPARISLREALCGCTVNVPTLDGRSIPV 283
>ref|XP_867677.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 4
isoform 3 [Canis familiaris].
Length = 346
Score = 308 bits (789), Expect(2) = 5e-92
Identities = 160/268 (59%), Positives = 184/268 (68%), Gaps = 9/268 (3%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY ILGI GA++++IKKAYRK ALK+HPDKNK P AEEKFKE+AEAY+VLSDPKK
Sbjct: 1 MGKDYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKK 60
Query: 447 RGLYDQYGEE---------GLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIF 599
R +YDQ+GEE F YTFHGDPHATFA+FFGGSNPF+IF
Sbjct: 61 REIYDQFGEEVQVAQRFSSAFSPGSGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIF 120
Query: 600 FASSRSTRPFSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPV 779
F G F AFG F NG R P R QDPPV
Sbjct: 121 FGRRM------GGGRDSDEMEVDGDPFSAFG-FSMNGYPRDRNSVG----PSRIKQDPPV 169
Query: 780 VHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEG 959
+HELRVSLEEIY+G TKRMKI+R+RLNPDGR+ R+EDKIL I IK+GWKEGTKITFP+EG
Sbjct: 170 IHELRVSLEEIYNGCTKRMKISRKRLNPDGRSYRSEDKILTIEIKKGWKEGTKITFPREG 229
Query: 960 DATPDNIPADIVFVLKDKPHAHFRRDGT 1043
D TP +IPADIVF++KDK H F+RDG+
Sbjct: 230 DETPTSIPADIVFIIKDKDHPKFKRDGS 257
Score = 49.3 bits (116), Expect(2) = 5e-92
Identities = 19/31 (61%), Positives = 28/31 (90%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
+++Y+A IS +EALCGC+VN+PT+DGR IP+
Sbjct: 258 NIIYTAKISLREALCGCSVNVPTMDGRTIPM 288
>ref|XP_866492.1| PREDICTED: similar to DnaJ homolog subfamily B member 1 (Heat shock
40 kDa protein 1) (Heat shock protein 40) (HSP40) (DnaJ
protein homolog 1) (HDJ-1) isoform 5 [Canis familiaris].
Length = 339
Score = 308 bits (788), Expect(2) = 7e-92
Identities = 157/268 (58%), Positives = 185/268 (69%), Gaps = 9/268 (3%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY+ LG+ GA+++EIK+AYR+ AL+YHPDKNKEP AEEKFKEIAEAYDVLSDP+K
Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 447 RGLYDQYGEEGL---KTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRS 617
R ++D+YGEEG + +YTFHGDPHA FA FFGG NPFD FF
Sbjct: 61 REIFDRYGEEGAPGGRPGPGGRAAPDGGNYYTFHGDPHAMFAEFFGGRNPFDTFFGQRNG 120
Query: 618 TR------PFSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPV 779
PFS F G GF ++ G R + P RK QDPPV
Sbjct: 121 EEGMDIDDPFSSFP---------------MGMGGFTNMNFGRSRPAQE--PTRKKQDPPV 163
Query: 780 VHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEG 959
H+LRVSLEEIY G TK+MKI+ +RLNPDG+++R EDKIL I +KRGWKEGTKITFPKEG
Sbjct: 164 THDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKRGWKEGTKITFPKEG 223
Query: 960 DATPDNIPADIVFVLKDKPHAHFRRDGT 1043
D T +NIPADIVFVLKDKPH F+RDG+
Sbjct: 224 DQTSNNIPADIVFVLKDKPHNIFKRDGS 251
Score = 49.3 bits (116), Expect(2) = 7e-92
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 1046 VLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
V+Y A IS +EALCGCTVN+PT+DGR IP+
Sbjct: 253 VIYPARISLREALCGCTVNVPTLDGRSIPV 282
>ref|XP_866013.1| PREDICTED: similar to DnaJ homolog subfamily B member 5 (Heat shock
protein Hsp40-3) (Heat shock protein cognate 40) (Hsc40)
isoform 2 [Canis familiaris].
Length = 220
Score = 254 bits (650), Expect(2) = 9e-80
Identities = 121/122 (99%), Positives = 121/122 (99%)
Frame = +3
Query: 678 FGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRL 857
FGAFGRFGFNGLSRGPRR PEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRL
Sbjct: 10 FGAFGRFGFNGLSRGPRRPPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRL 69
Query: 858 NPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRD 1037
NPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRD
Sbjct: 70 NPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRD 129
Query: 1038 GT 1043
GT
Sbjct: 130 GT 131
Score = 62.0 bits (149), Expect(2) = 9e-80
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPLP 1138
+VLYSALIS +EALCGCTVNIPTIDGRVIPLP
Sbjct: 132 NVLYSALISLKEALCGCTVNIPTIDGRVIPLP 163
>ref|XP_866478.1| PREDICTED: similar to DnaJ homolog subfamily B member 1 (Heat shock
40 kDa protein 1) (Heat shock protein 40) (HSP40) (DnaJ
protein homolog 1) (HDJ-1) isoform 4 [Canis familiaris].
Length = 295
Score = 264 bits (675), Expect(2) = 7e-79
Identities = 142/259 (54%), Positives = 169/259 (65%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY+ LG+ GA+++EIK+AYR+ AL+YHPDKNKEP AEEKFKEIAEAYDVLSDP+K
Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 626
R ++D+YGEEGLK GG + DI P
Sbjct: 61 REIFDRYGEEGLKG----------------------------GGPSGMDI-------DDP 85
Query: 627 FSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 806
FS F G GF ++ G R + P RK QDPPV H+LRVSLE
Sbjct: 86 FSSFP---------------MGMGGFTNMNFGRSRPAQE--PTRKKQDPPVTHDLRVSLE 128
Query: 807 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 986
EIY G TK+MKI+ +RLNPDG+++R EDKIL I +KRGWKEGTKITFPKEGD T +NIPA
Sbjct: 129 EIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKRGWKEGTKITFPKEGDQTSNNIPA 188
Query: 987 DIVFVLKDKPHAHFRRDGT 1043
DIVFVLKDKPH F+RDG+
Sbjct: 189 DIVFVLKDKPHNIFKRDGS 207
Score = 49.3 bits (116), Expect(2) = 7e-79
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 1046 VLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
V+Y A IS +EALCGCTVN+PT+DGR IP+
Sbjct: 209 VIYPARISLREALCGCTVNVPTLDGRSIPV 238
>ref|XP_534013.1| PREDICTED: similar to testis spermatogenesis apoptosis-related
protein 6 isoform 1 [Canis familiaris].
Length = 316
Score = 214 bits (546), Expect(2) = 1e-56
Identities = 117/260 (45%), Positives = 157/260 (60%), Gaps = 3/260 (1%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MG+DYY +L I + + EIKKAYRK+ALK HP K+ EP++ E F++IAEAYDVLSDP K
Sbjct: 1 MGQDYYSVLQITRNSEDAEIKKAYRKLALKNHPLKSGEPSSAETFRQIAEAYDVLSDPVK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFH--YTFHGDPHATFASFFGGSNPFDIFFASSRST 620
RG+YD++GEEGLK + Y FHG+P F FFGG NPF FF + S
Sbjct: 61 RGIYDKFGEEGLKGGIPLEYGSQTPWTTGYVFHGNPEKVFHEFFGGDNPFGEFFDAEESE 120
Query: 621 RPFSGFXXXXXXXXXXXXXFGAFGRFGFNGL-SRGPRRAPEPLYPRRKVQDPPVVHELRV 797
+ F GL RG ++ QDPP+ +L +
Sbjct: 121 IDLN-----------------------FGGLRGRGVKK-----------QDPPIERDLYL 146
Query: 798 SLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDN 977
SLE+++ G TK++KI+RR LN DG + +DKIL I +K GW++GT+ITF KEGD P+
Sbjct: 147 SLEDLFFGCTKKIKISRRVLNEDGYSSTIKDKILTIDVKPGWRQGTRITFEKEGDQGPNI 206
Query: 978 IPADIVFVLKDKPHAHFRRD 1037
IPADI+F++K+K H FRR+
Sbjct: 207 IPADIIFIVKEKLHPRFRRE 226
Score = 24.6 bits (52), Expect(2) = 1e-56
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 1076 EALCGCTVNIPTIDGRVIPLP 1138
+AL CTV + T+D R++ +P
Sbjct: 240 KALTCCTVEVKTLDDRLLNIP 260
>ref|XP_533894.1| PREDICTED: similar to DnaJ homolog subfamily B member 1 (Heat shock
40 kDa protein 1) (Heat shock protein 40) (HSP40) (DnaJ
protein homolog 1) (HDJ-1) isoform 1 [Canis familiaris].
Length = 240
Score = 180 bits (456), Expect(2) = 1e-53
Identities = 95/168 (56%), Positives = 109/168 (64%), Gaps = 6/168 (3%)
Frame = +3
Query: 558 FASFFGGSNPFDIFFASSRSTR------PFSGFXXXXXXXXXXXXXFGAFGRFGFNGLSR 719
FA FFGG NPFD FF PFS F G GF ++
Sbjct: 2 FAEFFGGRNPFDTFFGQRNGEEGMDIDDPFSSFP---------------MGMGGFTNMNF 46
Query: 720 GPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKIL 899
G R + P RK QDPPV H+LRVSLEEIY G TK+MKI+ +RLNPDG+++R EDKIL
Sbjct: 47 GRSRPAQE--PTRKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKIL 104
Query: 900 HIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGT 1043
I +KRGWKEGTKITFPKEGD T +NIPADIVFVLKDKPH F+RDG+
Sbjct: 105 TIEVKRGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGS 152
Score = 49.3 bits (116), Expect(2) = 1e-53
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 1046 VLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
V+Y A IS +EALCGCTVN+PT+DGR IP+
Sbjct: 154 VIYPARISLREALCGCTVNVPTLDGRSIPV 183
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,920,662
Number of extensions: 1186129
Number of successful extensions: 6112
Number of sequences better than 1.0e-05: 89
Number of HSP's gapped: 6021
Number of HSP's successfully gapped: 125
Length of query: 379
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 275
Effective length of database: 15,407,560
Effective search space: 4237079000
Effective search space used: 4237079000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007851
(1138 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127964.1| PREDICTED: dnaJ homolog subfamily B member 4... 321 8e-96
Alignment gi|XP_003123416.1| PREDICTED: dnaJ homolog subfamily B member 1... 313 9e-94
Alignment gi|XP_003122027.2| PREDICTED: dnaJ homolog subfamily A member 3... 300 1e-81
Alignment gi|XP_003361902.1| PREDICTED: dnaJ homolog subfamily B member 1... 207 5e-59
Alignment gi|NP_001182050.1| dnaJ homolog subfamily B member 13 [Sus scro... 209 4e-55
Alignment gi|XP_003127042.1| PREDICTED: dnaJ homolog subfamily A member 2... 131 7e-31
Alignment gi|XP_003130730.1| PREDICTED: dnaJ homolog subfamily A member 1... 127 5e-30
Alignment gi|NP_999504.1| dnaJ homolog subfamily A member 4 [Sus scrofa]. 121 2e-29
Alignment gi|XP_001926476.1| PREDICTED: dnaJ homolog subfamily B member 1... 108 4e-24
Alignment gi|XP_001924354.1| PREDICTED: dnaJ homolog subfamily B member 1... 104 1e-22
>ref|XP_003127964.1| PREDICTED: dnaJ homolog subfamily B member 4-like [Sus scrofa].
Length = 337
Score = 321 bits (823), Expect(2) = 8e-96
Identities = 163/259 (62%), Positives = 187/259 (72%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY ILGI GA++++IKKAYRK AL++HPDKNK P AEEKFKE+AEAY+VLSDPKK
Sbjct: 1 MGKDYYCILGIEKGASDEDIKKAYRKQALRFHPDKNKSPQAEEKFKEVAEAYEVLSDPKK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 626
R +YDQ+GEEGLK F YTFHGDPHATFA+FFGGSNPF+IFF
Sbjct: 61 REIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRR----- 115
Query: 627 FSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 806
G F AFG F NG R + P R QDPPV+HELRVSLE
Sbjct: 116 -MGGGRDSEDMEVDGDPFSAFG-FNMNGYPRD----RNSVGPSRLKQDPPVIHELRVSLE 169
Query: 807 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 986
EIY G TKRMKI+R+RLNPDGR+ RTEDKIL I IK+GWKEGTKITFP+EGD TP +IPA
Sbjct: 170 EIYSGCTKRMKISRKRLNPDGRSYRTEDKILTIEIKKGWKEGTKITFPREGDETPTSIPA 229
Query: 987 DIVFVLKDKPHAHFRRDGT 1043
DIVF++KDK H F+RDG+
Sbjct: 230 DIVFIIKDKDHPKFKRDGS 248
Score = 48.1 bits (113), Expect(2) = 8e-96
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
+++Y A IS +EALCGC+VN+PT+DGR IP+
Sbjct: 249 NIIYIAKISLREALCGCSVNVPTMDGRTIPM 279
>ref|XP_003123416.1| PREDICTED: dnaJ homolog subfamily B member 1 isoform 1 [Sus scrofa].
Length = 339
Score = 313 bits (803), Expect(2) = 9e-94
Identities = 161/268 (60%), Positives = 186/268 (69%), Gaps = 9/268 (3%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY+ LG+ GA+++EIK+AYR+ AL+YHPDKNKEP AEEKFKEIAEAYDVLSDP+K
Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 447 RGLYDQYGEEGLK---TXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRS 617
R ++D+YGEEGLK F YTFHGDPHA FA FFGG NPFD FF
Sbjct: 61 REIFDRYGEEGLKGGGPSGGSSGANGTSFSYTFHGDPHAMFAEFFGGRNPFDTFFGQRNG 120
Query: 618 TR------PFSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPV 779
PFSGF G GF + G R + P RK QDPPV
Sbjct: 121 EEGMDIDDPFSGFP---------------MGMGGFTTANFGRSRPAQE--PTRKKQDPPV 163
Query: 780 VHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEG 959
H+LRVSLEEIY G TK+MKI+ +RLNPDG+++R EDKIL I +KRGWKEGTKITFPKEG
Sbjct: 164 THDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKRGWKEGTKITFPKEG 223
Query: 960 DATPDNIPADIVFVLKDKPHAHFRRDGT 1043
D T +NIPADIVFVLKDKPH F+RDG+
Sbjct: 224 DQTSNNIPADIVFVLKDKPHNIFKRDGS 251
Score = 48.9 bits (115), Expect(2) = 9e-94
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +2
Query: 1046 VLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
V+Y A I+ +EALCGCTVN+PT+DGR IP+
Sbjct: 253 VIYPARITLREALCGCTVNVPTLDGRTIPV 282
>ref|XP_003122027.2| PREDICTED: dnaJ homolog subfamily A member 3, mitochondrial-like
[Sus scrofa].
Length = 330
Score = 300 bits (768), Expect = 1e-81
Identities = 146/163 (89%), Positives = 147/163 (90%), Gaps = 1/163 (0%)
Frame = +3
Query: 3 CPEWXXXXXXXXXXXXXXDGPRWRPQLLTA-PPLQARGAFRSFPHFWGEDFLASLMFKIQ 179
CPEW DGPRWRPQLLTA PPLQARGAFRSFPHFWGEDFLASLMFKIQ
Sbjct: 26 CPEWRRRSRSRVRGQRLSDGPRWRPQLLTAAPPLQARGAFRSFPHFWGEDFLASLMFKIQ 85
Query: 180 LEPLKLRAWTLNGFVKFRNKETSAGPVAVMGKDYYKILGIPSGANEDEIKKAYRKMALKY 359
LEPLKLRAWTLNGFVKFRNKETSAGPVAVMGKDYYKILGIPSGANEDEIKKAYRKMALKY
Sbjct: 86 LEPLKLRAWTLNGFVKFRNKETSAGPVAVMGKDYYKILGIPSGANEDEIKKAYRKMALKY 145
Query: 360 HPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKT 488
HPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEG +T
Sbjct: 146 HPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGKRT 188
>ref|XP_003361902.1| PREDICTED: dnaJ homolog subfamily B member 1-like, partial [Sus
scrofa].
Length = 289
Score = 207 bits (528), Expect(2) = 5e-59
Identities = 121/256 (47%), Positives = 142/256 (55%), Gaps = 6/256 (2%)
Frame = +3
Query: 294 GIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGE 473
G+ GA+++EIK+AYR+ AL+ K P+ G
Sbjct: 1 GLARGASDEEIKRAYRRQALRL---KGGGPSGGSS-----------------------GA 34
Query: 474 EGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTR------PFSG 635
G F YTFHGDPHA FA FFGG NPFD FF PFSG
Sbjct: 35 NGTS------------FSYTFHGDPHAMFAEFFGGRNPFDTFFGQRNGEEGMDIDDPFSG 82
Query: 636 FXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIY 815
F G GF + G R + P RK QDPPV H+LRVSLEEIY
Sbjct: 83 FP---------------MGMGGFTTANFGRSRPAQE--PTRKKQDPPVTHDLRVSLEEIY 125
Query: 816 HGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIV 995
G TK+MKI+ +RLNPDG+++R EDKIL I +KRGWKEGTKITFPKEGD T +NIPADIV
Sbjct: 126 SGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKRGWKEGTKITFPKEGDQTSNNIPADIV 185
Query: 996 FVLKDKPHAHFRRDGT 1043
FVLKDKPH F+RDG+
Sbjct: 186 FVLKDKPHNIFKRDGS 201
Score = 38.9 bits (89), Expect(2) = 5e-59
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +2
Query: 1046 VLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
V+Y A I+ +E CTVN+PT+DGR IP+
Sbjct: 203 VIYPARITLREVXXXCTVNVPTLDGRTIPV 232
>ref|NP_001182050.1| dnaJ homolog subfamily B member 13 [Sus scrofa].
Length = 316
Score = 209 bits (531), Expect(2) = 4e-55
Identities = 114/260 (43%), Positives = 156/260 (60%), Gaps = 3/260 (1%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MG+DYY +L I + + +IK AYRK+ALK HP ++ EP++ E F++IAEAYDVLSDP K
Sbjct: 1 MGQDYYAVLQITRNSEDAQIKNAYRKLALKNHPLRSVEPSSAETFRQIAEAYDVLSDPVK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFH--YTFHGDPHATFASFFGGSNPFDIFFASSRST 620
RG+YD++GEEGLK + Y FHG+P F FFGG NPF+ FF +
Sbjct: 61 RGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPEKVFHEFFGGDNPFNEFFDAE--- 117
Query: 621 RPFSGFXXXXXXXXXXXXXFGAFGRFGFNGL-SRGPRRAPEPLYPRRKVQDPPVVHELRV 797
G F GL RG ++ QDPP+ +L +
Sbjct: 118 --------------------GNEVDLNFGGLRGRGVKK-----------QDPPIERDLYL 146
Query: 798 SLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDN 977
SLE+++ G TK++KI+RR LN DG + +DKIL I +K GW++GT+ITF KEGD P+
Sbjct: 147 SLEDLFFGCTKKIKISRRVLNEDGFSSTIKDKILTIDVKPGWRQGTRITFEKEGDQGPNI 206
Query: 978 IPADIVFVLKDKPHAHFRRD 1037
IPADI+F++K+K H FRR+
Sbjct: 207 IPADIIFIVKEKLHPRFRRE 226
Score = 24.6 bits (52), Expect(2) = 4e-55
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 1076 EALCGCTVNIPTIDGRVIPLP 1138
+AL CTV + T+D R++ +P
Sbjct: 240 KALTCCTVEVKTLDDRLLNIP 260
>ref|XP_003127042.1| PREDICTED: dnaJ homolog subfamily A member 2-like [Sus scrofa].
Length = 412
Score = 131 bits (329), Expect(2) = 7e-31
Identities = 98/314 (31%), Positives = 136/314 (43%), Gaps = 61/314 (19%)
Frame = +3
Query: 282 YKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYD 461
Y ILG+P GA+E+E+KKAYRK+A +YHPDKN PNA +KFKEI+ AY+VLS+P+KR LYD
Sbjct: 10 YDILGVPPGASENELKKAYRKLAKEYHPDKN--PNAGDKFKEISFAYEVLSNPEKRELYD 67
Query: 462 QYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFX 641
+YGE+GL+ GG DIF + F G
Sbjct: 68 RYGEQGLREGSG-------------------------GGGGMDDIF------SHIFGG-- 94
Query: 642 XXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHG 821
G FG G SR RR E + +H L+VSLE++Y+G
Sbjct: 95 -------------GLFGFMGNQSRSRNGRRKGEDM-----------MHPLKVSLEDLYNG 130
Query: 822 STKRMKITRRRL-----------------------------------------------N 860
T ++++++ L N
Sbjct: 131 KTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCN 190
Query: 861 PDGRTVRTED--------------KILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVF 998
+G + +D KIL + + +G K G +ITF E D P P DIV
Sbjct: 191 GEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVL 250
Query: 999 VLKDKPHAHFRRDG 1040
+L++K H F+RDG
Sbjct: 251 LLQEKEHEVFQRDG 264
Score = 21.2 bits (43), Expect(2) = 7e-31
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVI 1129
H+ Y I EALCG +DGR I
Sbjct: 268 HMTYK--IGLVEALCGFQFTFKHLDGRQI 294
>ref|XP_003130730.1| PREDICTED: dnaJ homolog subfamily A member 1 [Sus scrofa].
Length = 397
Score = 127 bits (319), Expect(2) = 5e-30
Identities = 94/263 (35%), Positives = 126/263 (47%), Gaps = 9/263 (3%)
Frame = +3
Query: 279 YYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLY 458
YY +LG+ A ++E+KKAYRK+ALKYHPDKN PN EKFK+I++AY+VLSD KKR LY
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSDAKKRELY 64
Query: 459 DQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPF-------DIFFASSRS 617
D+ GE+ +K G P F FFGG ++ S +
Sbjct: 65 DKGGEQAIKEGGAGGG----------FGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVT 114
Query: 618 TRPFSGFXXXXXXXXXXXXXFGAFGRFGFNG-LSRGPRRAPEPLYPRRKVQDPPVVHELR 794
GR G G + P + R P +V +++
Sbjct: 115 LEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQ 174
Query: 795 -VSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATP 971
V +E HG +R+ R + +GR + E KIL + I +G K+G KITF EGD P
Sbjct: 175 SVCMECQGHG--ERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEP 232
Query: 972 DNIPADIVFVLKDKPHAHFRRDG 1040
P DI+ VL K HA F R G
Sbjct: 233 GLEPGDIIIVLDQKDHAVFTRRG 255
Score = 22.3 bits (46), Expect(2) = 5e-30
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 1076 EALCGCTVNIPTIDGRVI 1129
EALCG I T+D R I
Sbjct: 268 EALCGFQKPISTLDNRTI 285
>ref|NP_999504.1| dnaJ homolog subfamily A member 4 [Sus scrofa].
Length = 397
Score = 121 bits (304), Expect(2) = 2e-29
Identities = 92/274 (33%), Positives = 127/274 (46%), Gaps = 20/274 (7%)
Frame = +3
Query: 279 YYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLY 458
YY ILG+ A+ +EIKKAYRK+ALKYHPDKN P+ EKFK I++AY+VLSDPKKR +Y
Sbjct: 7 YYDILGVKPSASPEEIKKAYRKLALKYHPDKN--PDEGEKFKLISQAYEVLSDPKKRDIY 64
Query: 459 DQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASS-RSTRPFSG 635
DQ GE+ +K G P SF + FD+FF R R G
Sbjct: 65 DQGGEQAIKEGGS--------------GSP-----SFSSPMDIFDMFFGGGGRMARERRG 105
Query: 636 FXXXXXXXXXXXXXFGAFGRF-------------GFNGLSRGPRRAPEPLYPRRKVQ--- 767
+ + G G + P + R +Q
Sbjct: 106 KNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCP--VCKGRGMQIHI 163
Query: 768 ---DPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTK 938
P +V +++ E G +R+ R N G V E KI+ + +++G K+G K
Sbjct: 164 QQIGPGMVQQIQTVCIEC-KGQGERINPKDRCENCSGAKVIREKKIIEVHVEKGMKDGQK 222
Query: 939 ITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDG 1040
I F EGD P+ P D++ VL K H+ F+R G
Sbjct: 223 ILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRG 256
Score = 26.2 bits (56), Expect(2) = 2e-29
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 1034 RWHHVLYSALISPQEALCGCTVNIPTIDGRVI 1129
R H ++ I EALCG I T+D RV+
Sbjct: 255 RGHDLIMKMKIQLCEALCGFKKTIKTLDDRVL 286
>ref|XP_001926476.1| PREDICTED: dnaJ homolog subfamily B member 11 [Sus scrofa].
Length = 358
Score = 108 bits (271), Expect = 4e-24
Identities = 88/295 (29%), Positives = 127/295 (43%), Gaps = 36/295 (12%)
Frame = +3
Query: 264 VMGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKN-KEPNAEEKFKEIAEAYDVLSDP 440
+ G+D+YKILG+P A+ +IKKAYRK+AL+ HPD+N +P A+EKF+++ AY+VLSD
Sbjct: 21 IAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPRAQEKFQDLGAAYEVLSDS 80
Query: 441 KKRGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRST 620
+KR YD YGEEGLK H + HGD + F
Sbjct: 81 EKRKQYDTYGEEGLKDG-----------HQSSHGDIFSHF-------------------- 109
Query: 621 RPFSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVS 800
FG FGF + G R + PR ++ +L V+
Sbjct: 110 ----------------------FGDFGF--MFGGTPRQQDRNIPR----GSDIIVDLEVT 141
Query: 801 LEEIYHGS--------------------TKRMKITRRRLNPDGRTVRT------------ 884
LEE+Y G+ R ++ +L P GR T
Sbjct: 142 LEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGP-GRFQMTQEVVCDECPNVK 200
Query: 885 ---EDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDG 1040
E++ L + I+ G ++G + F EG+ D P D+ F +K H F R G
Sbjct: 201 LVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRG 255
>ref|XP_001924354.1| PREDICTED: dnaJ homolog subfamily B member 12 [Sus scrofa].
Length = 376
Score = 104 bits (259), Expect = 1e-22
Identities = 53/107 (49%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Frame = +3
Query: 273 KDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRG 452
KDYY+ILG+ GA+++++KKAYRK+ALK+HPDKN P A E FK I AY VLS+P+KR
Sbjct: 110 KDYYEILGVSRGASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK 169
Query: 453 LYDQYGEEGLKTXXXXXXXXXXXFHYTFHGD--PHATFASFFGGSNP 587
YDQ+G++ K+ FH F D P F FFGG P
Sbjct: 170 QYDQFGDD--KSQAARQGHGHGDFHRGFEADISPEDLFNMFFGGGFP 214
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,006,843
Number of extensions: 731553
Number of successful extensions: 3582
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 3539
Number of HSP's successfully gapped: 50
Length of query: 379
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 278
Effective length of database: 8,829,335
Effective search space: 2454555130
Effective search space used: 2454555130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007851
(1138 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_063927.1| dnaJ homolog subfamily B member 5 [Mus musculus]. 481 e-147
Alignment gi|NP_080202.1| dnaJ homolog subfamily B member 4 [Mus musculus]. 320 9e-95
Alignment gi|NP_081563.2| dnaJ homolog subfamily B member 4 [Mus musculus]. 320 9e-95
Alignment gi|NP_061278.1| dnaJ homolog subfamily B member 1 [Mus musculus]. 312 1e-93
Alignment gi|NP_705755.2| dnaJ homolog subfamily B member 13 [Mus musculu... 207 2e-54
Alignment gi|NP_062768.1| dnaJ homolog subfamily A member 2 [Mus musculus]. 131 1e-30
Alignment gi|NP_001120839.1| dnaJ homolog subfamily B member 6 isoform d ... 115 8e-26
Alignment gi|NP_035977.2| dnaJ homolog subfamily B member 6 isoform c [Mu... 115 8e-26
Alignment gi|NP_001033029.1| dnaJ homolog subfamily B member 6 isoform a ... 115 8e-26
Alignment gi|NP_001177734.1| dnaJ homolog subfamily B member 11 precursor... 108 6e-24
>ref|NP_063927.1| dnaJ homolog subfamily B member 5 [Mus musculus].
Length = 348
Score = 481 bits (1237), Expect(2) = e-147
Identities = 234/259 (90%), Positives = 234/259 (90%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK
Sbjct: 1 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 626
R LYDQYGEEGLKT FHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP
Sbjct: 61 RSLYDQYGEEGLKTGGGSSGGSGGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 120
Query: 627 FSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 806
FSGF FGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE
Sbjct: 121 FSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 180
Query: 807 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 986
EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA
Sbjct: 181 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 240
Query: 987 DIVFVLKDKPHAHFRRDGT 1043
DIVFVLKDKPHAHFRRDGT
Sbjct: 241 DIVFVLKDKPHAHFRRDGT 259
Score = 62.0 bits (149), Expect(2) = e-147
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPLP 1138
+VLYSALIS +EALCGCTVNIPTIDGRVIPLP
Sbjct: 260 NVLYSALISLKEALCGCTVNIPTIDGRVIPLP 291
>ref|NP_080202.1| dnaJ homolog subfamily B member 4 [Mus musculus].
Length = 337
Score = 320 bits (821), Expect(2) = 9e-95
Identities = 161/259 (62%), Positives = 187/259 (72%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY ILGI GA ++++KKAYRK ALK+HPDKNK P AEEKFKE+AEAY+VLSDPKK
Sbjct: 1 MGKDYYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 626
R +YDQ+GEEGLK F YTFHGDPHATFA+FFGGSNPF+IFF
Sbjct: 61 REIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRR----- 115
Query: 627 FSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 806
G F AFG F NG R + P R QDPP++HEL+VSLE
Sbjct: 116 -MGGGRDSEEMEIDGDPFSAFG-FSMNGYPRD----RNSVGPSRLKQDPPIIHELKVSLE 169
Query: 807 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 986
EIY G TKRMKI+R+RLNPDGR+ R+EDKIL I IK+GWKEGTKITFP+EGD TP++IPA
Sbjct: 170 EIYSGCTKRMKISRKRLNPDGRSYRSEDKILTIEIKKGWKEGTKITFPREGDETPNSIPA 229
Query: 987 DIVFVLKDKPHAHFRRDGT 1043
DIVFV+KDK H F+RDG+
Sbjct: 230 DIVFVIKDKEHPKFKRDGS 248
Score = 45.8 bits (107), Expect(2) = 9e-95
Identities = 17/31 (54%), Positives = 28/31 (90%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
+++Y+A IS +EALCGC++N+PT+DGR +P+
Sbjct: 249 NIVYTAKISLREALCGCSLNVPTMDGRNLPM 279
>ref|NP_081563.2| dnaJ homolog subfamily B member 4 [Mus musculus].
Length = 337
Score = 320 bits (821), Expect(2) = 9e-95
Identities = 161/259 (62%), Positives = 187/259 (72%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY ILGI GA ++++KKAYRK ALK+HPDKNK P AEEKFKE+AEAY+VLSDPKK
Sbjct: 1 MGKDYYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 626
R +YDQ+GEEGLK F YTFHGDPHATFA+FFGGSNPF+IFF
Sbjct: 61 REIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRR----- 115
Query: 627 FSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 806
G F AFG F NG R + P R QDPP++HEL+VSLE
Sbjct: 116 -MGGGRDSEEMEIDGDPFSAFG-FSMNGYPRD----RNSVGPSRLKQDPPIIHELKVSLE 169
Query: 807 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 986
EIY G TKRMKI+R+RLNPDGR+ R+EDKIL I IK+GWKEGTKITFP+EGD TP++IPA
Sbjct: 170 EIYSGCTKRMKISRKRLNPDGRSYRSEDKILTIEIKKGWKEGTKITFPREGDETPNSIPA 229
Query: 987 DIVFVLKDKPHAHFRRDGT 1043
DIVFV+KDK H F+RDG+
Sbjct: 230 DIVFVIKDKEHPKFKRDGS 248
Score = 45.8 bits (107), Expect(2) = 9e-95
Identities = 17/31 (54%), Positives = 28/31 (90%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
+++Y+A IS +EALCGC++N+PT+DGR +P+
Sbjct: 249 NIVYTAKISLREALCGCSLNVPTMDGRNLPM 279
>ref|NP_061278.1| dnaJ homolog subfamily B member 1 [Mus musculus].
Length = 340
Score = 312 bits (800), Expect(2) = 1e-93
Identities = 159/265 (60%), Positives = 186/265 (70%), Gaps = 6/265 (2%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY+ LG+ GA++DEIK+AYR+ AL+YHPDKNKEP AEEKFKEIAEAYDVLSDP+K
Sbjct: 1 MGKDYYQTLGLARGASDDEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 447 RGLYDQYGEEGLK----TXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSR 614
R ++D+YGEEGLK + F YTFHGDPHA FA FFGG NPFD FF
Sbjct: 61 REIFDRYGEEGLKGGSPSGGSSGGANGTSFSYTFHGDPHAMFAEFFGGRNPFDTFFGQRN 120
Query: 615 STRPFSGFXXXXXXXXXXXXXFGAF--GRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHE 788
F +F G GF ++ G R + P RK QDPPV H+
Sbjct: 121 GEEGMD-----------IDDTFSSFPMGMGGFTNMNFGRSRPSQE--PTRKKQDPPVTHD 167
Query: 789 LRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDAT 968
LRVSLEEIY G TK+MKI+ +RLNPDG+++R EDKIL I +KRGWKEGTKITFPKEGD T
Sbjct: 168 LRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKRGWKEGTKITFPKEGDQT 227
Query: 969 PDNIPADIVFVLKDKPHAHFRRDGT 1043
+NIPADIVFVLKDKPH F+RDG+
Sbjct: 228 SNNIPADIVFVLKDKPHNIFKRDGS 252
Score = 50.1 bits (118), Expect(2) = 1e-93
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 1046 VLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
V+Y A IS +EALCGCTVN+PT+DGR IP+
Sbjct: 254 VIYPARISLREALCGCTVNVPTLDGRTIPV 283
>ref|NP_705755.2| dnaJ homolog subfamily B member 13 [Mus musculus].
Length = 316
Score = 207 bits (526), Expect(2) = 2e-54
Identities = 114/260 (43%), Positives = 154/260 (59%), Gaps = 3/260 (1%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MG DYY +L + + + +IKKAYRK+ALK HP K+ EP A E FK+IAEAYDVLSDP K
Sbjct: 1 MGLDYYAVLQVTRNSEDAQIKKAYRKLALKNHPLKSSEPGAPEIFKQIAEAYDVLSDPVK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFH--YTFHGDPHATFASFFGGSNPFDIFFASSRST 620
RG+YD++GEEGLK + Y FHG+P F FFGG NPF FF + +
Sbjct: 61 RGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGNPDKVFHEFFGGDNPFSEFFDAEGND 120
Query: 621 RPFSGFXXXXXXXXXXXXXFGAFGRFGFNGL-SRGPRRAPEPLYPRRKVQDPPVVHELRV 797
+ F GL RG ++ QDPP+ +L +
Sbjct: 121 IDLN-----------------------FGGLWGRGVQK-----------QDPPIERDLYL 146
Query: 798 SLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDN 977
SLE+++ G TK++KI+RR LN D + +DKIL I ++ GW++GT+ITF KEGD P+
Sbjct: 147 SLEDLFFGCTKKIKISRRVLNEDRYSSTIKDKILTIDVRPGWRQGTRITFEKEGDQGPNI 206
Query: 978 IPADIVFVLKDKPHAHFRRD 1037
IPADI+F++K+K H FRR+
Sbjct: 207 IPADIIFIVKEKLHPRFRRE 226
Score = 24.6 bits (52), Expect(2) = 2e-54
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 1076 EALCGCTVNIPTIDGRVIPLP 1138
+AL CTV + T+D R++ +P
Sbjct: 240 KALTCCTVEVKTLDDRLLNIP 260
>ref|NP_062768.1| dnaJ homolog subfamily A member 2 [Mus musculus].
Length = 412
Score = 131 bits (329), Expect = 1e-30
Identities = 98/314 (31%), Positives = 136/314 (43%), Gaps = 61/314 (19%)
Frame = +3
Query: 282 YKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYD 461
Y ILG+P GA+E+E+KKAYRK+A +YHPDKN PNA +KFKEI+ AY+VLS+P+KR LYD
Sbjct: 10 YDILGVPPGASENELKKAYRKLAKEYHPDKN--PNAGDKFKEISFAYEVLSNPEKRELYD 67
Query: 462 QYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFX 641
+YGE+GL+ GG DIF + F G
Sbjct: 68 RYGEQGLREGSG-------------------------GGGGMDDIF------SHIFGG-- 94
Query: 642 XXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHG 821
G FG G SR RR E + +H L+VSLE++Y+G
Sbjct: 95 -------------GLFGFMGNQSRSRNGRRRGEDM-----------MHPLKVSLEDLYNG 130
Query: 822 STKRMKITRRRL-----------------------------------------------N 860
T ++++++ L N
Sbjct: 131 KTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCN 190
Query: 861 PDGRTVRTED--------------KILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVF 998
+G + +D KIL + + +G K G +ITF E D P P DIV
Sbjct: 191 GEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVL 250
Query: 999 VLKDKPHAHFRRDG 1040
+L++K H F+RDG
Sbjct: 251 LLQEKEHEVFQRDG 264
>ref|NP_001120839.1| dnaJ homolog subfamily B member 6 isoform d [Mus musculus].
Length = 241
Score = 115 bits (287), Expect = 8e-26
Identities = 71/172 (41%), Positives = 89/172 (51%), Gaps = 25/172 (14%)
Frame = +3
Query: 276 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKE--PNAEEKFKEIAEAYDVLSDPKKR 449
DYY++LG+ A+ ++IKKAYRK ALK+HPDKN E AE KFK++AEAY+VLSD KKR
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 62
Query: 450 GLYDQYGEEGLK---TXXXXXXXXXXXFHYTFHGDPHATFASFFGGS--------NPFDI 596
+YD+YG+EGL F +TF +P F FFGG +PFD
Sbjct: 63 DIYDKYGKEGLNGGGGGGGIHFDSPFEFGFTFR-NPDDVFREFFGGRDPFSFDFFDPFDD 121
Query: 597 FFASSRSTR------------PFSGFXXXXXXXXXXXXXFGAFGRFGFNGLS 716
FF + R R FSGF F FG G GL+
Sbjct: 122 FFGNRRGPRGNRSRGAGSFFSTFSGFPSFGSGFPAFDTGFTPFGSLGHGGLT 173
>ref|NP_035977.2| dnaJ homolog subfamily B member 6 isoform c [Mus musculus].
Length = 242
Score = 115 bits (287), Expect = 8e-26
Identities = 71/173 (41%), Positives = 89/173 (51%), Gaps = 26/173 (15%)
Frame = +3
Query: 276 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKE--PNAEEKFKEIAEAYDVLSDPKKR 449
DYY++LG+ A+ ++IKKAYRK ALK+HPDKN E AE KFK++AEAY+VLSD KKR
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 62
Query: 450 GLYDQYGEEGLK---TXXXXXXXXXXXFHYTFHGDPHATFASFFGG---------SNPFD 593
+YD+YG+EGL F +TF +P F FFGG +PFD
Sbjct: 63 DIYDKYGKEGLNGGGGGGGIHFDSPFEFGFTFR-NPDDVFREFFGGRDPFSFDFFEDPFD 121
Query: 594 IFFASSRSTR------------PFSGFXXXXXXXXXXXXXFGAFGRFGFNGLS 716
FF + R R FSGF F FG G GL+
Sbjct: 122 DFFGNRRGPRGNRSRGAGSFFSTFSGFPSFGSGFPAFDTGFTPFGSLGHGGLT 174
>ref|NP_001033029.1| dnaJ homolog subfamily B member 6 isoform a [Mus musculus].
Length = 365
Score = 115 bits (287), Expect = 8e-26
Identities = 71/173 (41%), Positives = 89/173 (51%), Gaps = 26/173 (15%)
Frame = +3
Query: 276 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKE--PNAEEKFKEIAEAYDVLSDPKKR 449
DYY++LG+ A+ ++IKKAYRK ALK+HPDKN E AE KFK++AEAY+VLSD KKR
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 62
Query: 450 GLYDQYGEEGLK---TXXXXXXXXXXXFHYTFHGDPHATFASFFGG---------SNPFD 593
+YD+YG+EGL F +TF +P F FFGG +PFD
Sbjct: 63 DIYDKYGKEGLNGGGGGGGIHFDSPFEFGFTFR-NPDDVFREFFGGRDPFSFDFFEDPFD 121
Query: 594 IFFASSRSTR------------PFSGFXXXXXXXXXXXXXFGAFGRFGFNGLS 716
FF + R R FSGF F FG G GL+
Sbjct: 122 DFFGNRRGPRGNRSRGAGSFFSTFSGFPSFGSGFPAFDTGFTPFGSLGHGGLT 174
>ref|NP_001177734.1| dnaJ homolog subfamily B member 11 precursor [Mus musculus].
Length = 358
Score = 108 bits (271), Expect = 6e-24
Identities = 88/295 (29%), Positives = 127/295 (43%), Gaps = 36/295 (12%)
Frame = +3
Query: 264 VMGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKN-KEPNAEEKFKEIAEAYDVLSDP 440
+ G+D+YKILG+P A+ +IKKAYRK+AL+ HPD+N +P A+EKF+++ AY+VLSD
Sbjct: 21 IAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDS 80
Query: 441 KKRGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRST 620
+KR YD YGEEGLK H + HGD + F
Sbjct: 81 EKRKQYDTYGEEGLKDG-----------HQSSHGDIFSHF-------------------- 109
Query: 621 RPFSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVS 800
FG FGF + G R + PR ++ +L V+
Sbjct: 110 ----------------------FGDFGF--MFGGTPRQQDRNIPR----GSDIIVDLEVT 141
Query: 801 LEEIYHGS--------------------TKRMKITRRRLNPDGRTVRT------------ 884
LEE+Y G+ R ++ +L P GR T
Sbjct: 142 LEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGP-GRFQMTQEVVCDECPNVK 200
Query: 885 ---EDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDG 1040
E++ L + I+ G ++G + F EG+ D P D+ F +K H F R G
Sbjct: 201 LVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHRIFERRG 255
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,336,039
Number of extensions: 975859
Number of successful extensions: 5594
Number of sequences better than 1.0e-05: 57
Number of HSP's gapped: 5525
Number of HSP's successfully gapped: 71
Length of query: 379
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 276
Effective length of database: 12,523,851
Effective search space: 3456582876
Effective search space used: 3456582876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007851
(1138 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001128476.2| dnaJ homolog subfamily B member 5 isoform 2 ... 617 0.0
Alignment gi|NP_001128477.1| dnaJ homolog subfamily B member 5 isoform 1 ... 600 0.0
Alignment gi|NP_036398.3| dnaJ homolog subfamily B member 5 isoform 3 [Ho... 483 e-148
Alignment gi|NP_008965.2| dnaJ homolog subfamily B member 4 [Homo sapiens]. 318 8e-95
Alignment gi|NP_006136.1| dnaJ homolog subfamily B member 1 [Homo sapiens]. 315 2e-94
Alignment gi|NP_705842.2| dnaJ homolog subfamily B member 13 [Homo sapien... 213 6e-56
Alignment gi|NP_005871.1| dnaJ homolog subfamily A member 2 [Homo sapiens]. 131 1e-30
Alignment gi|NP_001530.1| dnaJ homolog subfamily A member 1 [Homo sapiens]. 127 8e-30
Alignment gi|NP_061072.3| dnaJ homolog subfamily A member 4 isoform 1 [Ho... 120 3e-29
Alignment gi|NP_001123654.1| dnaJ homolog subfamily A member 4 isoform 2 ... 120 3e-29
>ref|NP_001128476.2| dnaJ homolog subfamily B member 5 isoform 2 [Homo sapiens].
Length = 462
Score = 617 bits (1591), Expect(2) = 0.0
Identities = 305/348 (87%), Positives = 305/348 (87%), Gaps = 1/348 (0%)
Frame = +3
Query: 3 CPEWXXXXXXXXXXXXXXDGPRWRPQLLTA-PPLQARGAFRSFPHFWGEDFLASLMFKIQ 179
CP W GPR RPQLLTA PPLQARGAFRSFPH WGEDFLASLMFKIQ
Sbjct: 26 CPGWRRRSRSRGRGQRLSHGPRRRPQLLTAAPPLQARGAFRSFPHSWGEDFLASLMFKIQ 85
Query: 180 LEPLKLRAWTLNGFVKFRNKETSAGPVAVMGKDYYKILGIPSGANEDEIKKAYRKMALKY 359
LEPLKLRAWTLNGFVKFRNKETSAGPVAVMGKDYYKILGIPSGANEDEIKKAYRKMALKY
Sbjct: 86 LEPLKLRAWTLNGFVKFRNKETSAGPVAVMGKDYYKILGIPSGANEDEIKKAYRKMALKY 145
Query: 360 HPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKTXXXXXXXXXXXFHYTFH 539
HPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKT FHYTFH
Sbjct: 146 HPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKTGGGTSGGSSGSFHYTFH 205
Query: 540 GDPHATFASFFGGSNPFDIFFASSRSTRPFSGFXXXXXXXXXXXXXFGAFGRFGFNGLSR 719
GDPHATFASFFGGSNPFDIFFASSRSTRPFSGF FGAFGRFGFNGLSR
Sbjct: 206 GDPHATFASFFGGSNPFDIFFASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSR 265
Query: 720 GPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKIL 899
GPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKIL
Sbjct: 266 GPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKIL 325
Query: 900 HIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGT 1043
HIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGT
Sbjct: 326 HIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGT 373
Score = 62.0 bits (149), Expect(2) = 0.0
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPLP 1138
+VLYSALIS +EALCGCTVNIPTIDGRVIPLP
Sbjct: 374 NVLYSALISLKEALCGCTVNIPTIDGRVIPLP 405
>ref|NP_001128477.1| dnaJ homolog subfamily B member 5 isoform 1 [Homo sapiens].
Length = 420
Score = 600 bits (1548), Expect(2) = 0.0
Identities = 293/318 (92%), Positives = 293/318 (92%)
Frame = +3
Query: 90 APPLQARGAFRSFPHFWGEDFLASLMFKIQLEPLKLRAWTLNGFVKFRNKETSAGPVAVM 269
APPLQARGAFRSFPH WGEDFLASLMFKIQLEPLKLRAWTLNGFVKFRNKETSAGPVAVM
Sbjct: 14 APPLQARGAFRSFPHSWGEDFLASLMFKIQLEPLKLRAWTLNGFVKFRNKETSAGPVAVM 73
Query: 270 GKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKR 449
GKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKR
Sbjct: 74 GKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKR 133
Query: 450 GLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPF 629
GLYDQYGEEGLKT FHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPF
Sbjct: 134 GLYDQYGEEGLKTGGGTSGGSSGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPF 193
Query: 630 SGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEE 809
SGF FGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEE
Sbjct: 194 SGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEE 253
Query: 810 IYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPAD 989
IYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPAD
Sbjct: 254 IYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPAD 313
Query: 990 IVFVLKDKPHAHFRRDGT 1043
IVFVLKDKPHAHFRRDGT
Sbjct: 314 IVFVLKDKPHAHFRRDGT 331
Score = 62.0 bits (149), Expect(2) = 0.0
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPLP 1138
+VLYSALIS +EALCGCTVNIPTIDGRVIPLP
Sbjct: 332 NVLYSALISLKEALCGCTVNIPTIDGRVIPLP 363
>ref|NP_036398.3| dnaJ homolog subfamily B member 5 isoform 3 [Homo sapiens].
Length = 348
Score = 483 bits (1243), Expect(2) = e-148
Identities = 235/259 (90%), Positives = 235/259 (90%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK
Sbjct: 1 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 626
RGLYDQYGEEGLKT FHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP
Sbjct: 61 RGLYDQYGEEGLKTGGGTSGGSSGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 120
Query: 627 FSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 806
FSGF FGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE
Sbjct: 121 FSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 180
Query: 807 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 986
EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA
Sbjct: 181 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 240
Query: 987 DIVFVLKDKPHAHFRRDGT 1043
DIVFVLKDKPHAHFRRDGT
Sbjct: 241 DIVFVLKDKPHAHFRRDGT 259
Score = 62.0 bits (149), Expect(2) = e-148
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPLP 1138
+VLYSALIS +EALCGCTVNIPTIDGRVIPLP
Sbjct: 260 NVLYSALISLKEALCGCTVNIPTIDGRVIPLP 291
>ref|NP_008965.2| dnaJ homolog subfamily B member 4 [Homo sapiens].
Length = 337
Score = 318 bits (816), Expect(2) = 8e-95
Identities = 162/259 (62%), Positives = 187/259 (72%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY ILGI GA++++IKKAYRK ALK+HPDKNK P AEEKFKE+AEAY+VLSDPKK
Sbjct: 1 MGKDYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRP 626
R +YDQ+GEEGLK F YTFHGDPHATFA+FFGGSNPF+IFF
Sbjct: 61 REIYDQFGEEGLKGGAGGTDGQGGTFRYTFHGDPHATFAAFFGGSNPFEIFFGRR----- 115
Query: 627 FSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLE 806
G F AFG F NG R + P R QDPPV+HELRVSLE
Sbjct: 116 -MGGGRDSEEMEIDGDPFSAFG-FSMNGYPRD----RNSVGPSRLKQDPPVIHELRVSLE 169
Query: 807 EIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPA 986
EIY G TKRMKI+R+RLN DGR+ R+EDKIL I IK+GWKEGTKITFP+EGD TP++IPA
Sbjct: 170 EIYSGCTKRMKISRKRLNADGRSYRSEDKILTIEIKKGWKEGTKITFPREGDETPNSIPA 229
Query: 987 DIVFVLKDKPHAHFRRDGT 1043
DIVF++KDK H F+RDG+
Sbjct: 230 DIVFIIKDKDHPKFKRDGS 248
Score = 48.1 bits (113), Expect(2) = 8e-95
Identities = 18/31 (58%), Positives = 28/31 (90%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
+++Y+A IS +EALCGC++N+PT+DGR IP+
Sbjct: 249 NIIYTAKISLREALCGCSINVPTLDGRNIPM 279
>ref|NP_006136.1| dnaJ homolog subfamily B member 1 [Homo sapiens].
Length = 340
Score = 315 bits (807), Expect(2) = 2e-94
Identities = 160/269 (59%), Positives = 189/269 (70%), Gaps = 10/269 (3%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MGKDYY+ LG+ GA+++EIK+AYR+ AL+YHPDKNKEP AEEKFKEIAEAYDVLSDP+K
Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 447 RGLYDQYGEEGLK----TXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSR 614
R ++D+YGEEGLK + F YTFHGDPHA FA FFGG NPFD FF
Sbjct: 61 REIFDRYGEEGLKGSGPSGGSGGGANGTSFSYTFHGDPHAMFAEFFGGRNPFDTFFGQRN 120
Query: 615 STR------PFSGFXXXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPP 776
PFSGF G GF ++ G R+ + P RK QDPP
Sbjct: 121 GEEGMDIDDPFSGFP---------------MGMGGFTNVNFGRSRSAQE--PARKKQDPP 163
Query: 777 VVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKE 956
V H+LRVSLEEIY G TK+MKI+ +RLNPDG+++R EDKIL I +K+GWKEGTKITFPKE
Sbjct: 164 VTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKE 223
Query: 957 GDATPDNIPADIVFVLKDKPHAHFRRDGT 1043
GD T +NIPADIVFVLKDKPH F+RDG+
Sbjct: 224 GDQTSNNIPADIVFVLKDKPHNIFKRDGS 252
Score = 50.1 bits (118), Expect(2) = 2e-94
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +2
Query: 1046 VLYSALISPQEALCGCTVNIPTIDGRVIPL 1135
V+Y A IS +EALCGCTVN+PT+DGR IP+
Sbjct: 254 VIYPARISLREALCGCTVNVPTLDGRTIPV 283
>ref|NP_705842.2| dnaJ homolog subfamily B member 13 [Homo sapiens].
Length = 316
Score = 213 bits (541), Expect(2) = 6e-56
Identities = 115/260 (44%), Positives = 158/260 (60%), Gaps = 3/260 (1%)
Frame = +3
Query: 267 MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKK 446
MG+DYY +LGI + + +IK+AYR++ALK+HP K+ EP++ E F++IAEAYDVLSDP K
Sbjct: 1 MGQDYYSVLGITRNSEDAQIKQAYRRLALKHHPLKSNEPSSAEIFRQIAEAYDVLSDPMK 60
Query: 447 RGLYDQYGEEGLKTXXXXXXXXXXXFH--YTFHGDPHATFASFFGGSNPFDIFFASSRST 620
RG+YD++GEEGLK + Y FHG P F FFGG+NPF FF +
Sbjct: 61 RGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGKPEKVFHEFFGGNNPFSEFFDAE--- 117
Query: 621 RPFSGFXXXXXXXXXXXXXFGAFGRFGFNGLS-RGPRRAPEPLYPRRKVQDPPVVHELRV 797
G+ F GL RG ++ QDP V +L +
Sbjct: 118 --------------------GSEVDLNFGGLQGRGVKK-----------QDPQVERDLYL 146
Query: 798 SLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDN 977
SLE+++ G TK++KI+RR LN DG + +DKIL I +K GW++GT+ITF KEGD P+
Sbjct: 147 SLEDLFFGCTKKIKISRRVLNEDGYSSTIKDKILTIDVKPGWRQGTRITFEKEGDQGPNI 206
Query: 978 IPADIVFVLKDKPHAHFRRD 1037
IPADI+F++K+K H FRR+
Sbjct: 207 IPADIIFIVKEKLHPRFRRE 226
Score = 24.3 bits (51), Expect(2) = 6e-56
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 1076 EALCGCTVNIPTIDGRVIPLP 1138
+AL CTV + T+D R++ +P
Sbjct: 240 KALTCCTVEVRTLDDRLLNIP 260
>ref|NP_005871.1| dnaJ homolog subfamily A member 2 [Homo sapiens].
Length = 412
Score = 131 bits (329), Expect(2) = 1e-30
Identities = 98/314 (31%), Positives = 136/314 (43%), Gaps = 61/314 (19%)
Frame = +3
Query: 282 YKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYD 461
Y ILG+P GA+E+E+KKAYRK+A +YHPDKN PNA +KFKEI+ AY+VLS+P+KR LYD
Sbjct: 10 YDILGVPPGASENELKKAYRKLAKEYHPDKN--PNAGDKFKEISFAYEVLSNPEKRELYD 67
Query: 462 QYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFX 641
+YGE+GL+ GG DIF + F G
Sbjct: 68 RYGEQGLREGSG-------------------------GGGGMDDIF------SHIFGG-- 94
Query: 642 XXXXXXXXXXXXFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHG 821
G FG G SR RR E + +H L+VSLE++Y+G
Sbjct: 95 -------------GLFGFMGNQSRSRNGRRRGEDM-----------MHPLKVSLEDLYNG 130
Query: 822 STKRMKITRRRL-----------------------------------------------N 860
T ++++++ L N
Sbjct: 131 KTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCN 190
Query: 861 PDGRTVRTED--------------KILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVF 998
+G + +D KIL + + +G K G +ITF E D P P DIV
Sbjct: 191 GEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVL 250
Query: 999 VLKDKPHAHFRRDG 1040
+L++K H F+RDG
Sbjct: 251 LLQEKEHEVFQRDG 264
Score = 21.2 bits (43), Expect(2) = 1e-30
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 1043 HVLYSALISPQEALCGCTVNIPTIDGRVI 1129
H+ Y I EALCG +DGR I
Sbjct: 268 HMTYK--IGLVEALCGFQFTFKHLDGRQI 294
>ref|NP_001530.1| dnaJ homolog subfamily A member 1 [Homo sapiens].
Length = 397
Score = 127 bits (319), Expect(2) = 8e-30
Identities = 94/263 (35%), Positives = 126/263 (47%), Gaps = 9/263 (3%)
Frame = +3
Query: 279 YYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLY 458
YY +LG+ A ++E+KKAYRK+ALKYHPDKN PN EKFK+I++AY+VLSD KKR LY
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSDAKKRELY 64
Query: 459 DQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPF-------DIFFASSRS 617
D+ GE+ +K G P F FFGG ++ S +
Sbjct: 65 DKGGEQAIKEGGAGGG----------FGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVT 114
Query: 618 TRPFSGFXXXXXXXXXXXXXFGAFGRFGFNG-LSRGPRRAPEPLYPRRKVQDPPVVHELR 794
GR G G + P + R P +V +++
Sbjct: 115 LEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQ 174
Query: 795 -VSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATP 971
V +E HG +R+ R + +GR + E KIL + I +G K+G KITF EGD P
Sbjct: 175 SVCMECQGHG--ERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEP 232
Query: 972 DNIPADIVFVLKDKPHAHFRRDG 1040
P DI+ VL K HA F R G
Sbjct: 233 GLEPGDIIIVLDQKDHAVFTRRG 255
Score = 22.3 bits (46), Expect(2) = 8e-30
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 1076 EALCGCTVNIPTIDGRVI 1129
EALCG I T+D R I
Sbjct: 268 EALCGFQKPISTLDNRTI 285
>ref|NP_061072.3| dnaJ homolog subfamily A member 4 isoform 1 [Homo sapiens].
Length = 426
Score = 120 bits (301), Expect(2) = 3e-29
Identities = 92/274 (33%), Positives = 127/274 (46%), Gaps = 20/274 (7%)
Frame = +3
Query: 279 YYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLY 458
YY ILG+ A+ +EIKKAYRK+ALKYHPDKN P+ EKFK I++AY+VLSDPKKR +Y
Sbjct: 36 YYDILGVKPSASPEEIKKAYRKLALKYHPDKN--PDEGEKFKLISQAYEVLSDPKKRDVY 93
Query: 459 DQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASS-RSTRPFSG 635
DQ GE+ +K G P SF + FD+FF R R G
Sbjct: 94 DQGGEQAIKEGGS--------------GSP-----SFSSPMDIFDMFFGGGGRMARERRG 134
Query: 636 FXXXXXXXXXXXXXFGAFGRF-------------GFNGLSRGPRRAPEPLYPRRKVQ--- 767
+ + G G + P L R +Q
Sbjct: 135 KNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCP--LCKGRGMQIHI 192
Query: 768 ---DPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTK 938
P +V +++ E G +R+ R + G V E KI+ + +++G K+G K
Sbjct: 193 QQIGPGMVQQIQTVCIEC-KGQGERINPKDRCESCSGAKVIREKKIIEVHVEKGMKDGQK 251
Query: 939 ITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDG 1040
I F EGD P+ P D++ VL K H+ F+R G
Sbjct: 252 ILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRG 285
Score = 27.3 bits (59), Expect(2) = 3e-29
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 1034 RWHHVLYSALISPQEALCGCTVNIPTIDGRVI 1129
R H ++ I EALCG I T+D R++
Sbjct: 284 RGHDLIMKMKIQLSEALCGFKKTIKTLDNRIL 315
>ref|NP_001123654.1| dnaJ homolog subfamily A member 4 isoform 2 [Homo sapiens].
Length = 397
Score = 120 bits (301), Expect(2) = 3e-29
Identities = 92/274 (33%), Positives = 127/274 (46%), Gaps = 20/274 (7%)
Frame = +3
Query: 279 YYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLY 458
YY ILG+ A+ +EIKKAYRK+ALKYHPDKN P+ EKFK I++AY+VLSDPKKR +Y
Sbjct: 7 YYDILGVKPSASPEEIKKAYRKLALKYHPDKN--PDEGEKFKLISQAYEVLSDPKKRDVY 64
Query: 459 DQYGEEGLKTXXXXXXXXXXXFHYTFHGDPHATFASFFGGSNPFDIFFASS-RSTRPFSG 635
DQ GE+ +K G P SF + FD+FF R R G
Sbjct: 65 DQGGEQAIKEGGS--------------GSP-----SFSSPMDIFDMFFGGGGRMARERRG 105
Query: 636 FXXXXXXXXXXXXXFGAFGRF-------------GFNGLSRGPRRAPEPLYPRRKVQ--- 767
+ + G G + P L R +Q
Sbjct: 106 KNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCP--LCKGRGMQIHI 163
Query: 768 ---DPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEGTK 938
P +V +++ E G +R+ R + G V E KI+ + +++G K+G K
Sbjct: 164 QQIGPGMVQQIQTVCIEC-KGQGERINPKDRCESCSGAKVIREKKIIEVHVEKGMKDGQK 222
Query: 939 ITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDG 1040
I F EGD P+ P D++ VL K H+ F+R G
Sbjct: 223 ILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRG 256
Score = 27.3 bits (59), Expect(2) = 3e-29
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 1034 RWHHVLYSALISPQEALCGCTVNIPTIDGRVI 1129
R H ++ I EALCG I T+D R++
Sbjct: 255 RGHDLIMKMKIQLSEALCGFKKTIKTLDNRIL 286
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,997,181
Number of extensions: 1164910
Number of successful extensions: 6622
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 6568
Number of HSP's successfully gapped: 64
Length of query: 379
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,868,908
Effective search space: 4088949700
Effective search space used: 4088949700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007851
(1138 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1166 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1166 bits (588), Expect = 0.0
Identities = 595/596 (99%), Gaps = 1/596 (0%)
Strand = Plus / Plus
Query: 476 aggcctgaagaccggcggtggttcatcaggtggctccagtggctcctttcactacacctt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263322598 aggcctgaagaccggcggtggttcatcaggtggctccagtggctcctttcactacacctt 263322657
Query: 536 tcatggggacccccatgccacctttgcctccttctttggaggctccaaccccttcgatat 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263322658 tcatggggacccccatgccacctttgcctccttctttggaggctccaaccccttcgatat 263322717
Query: 596 cttctttgccagcagtcgttccactcgacctttcagtggctttgacccagatgacatgga 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263322718 cttctttgccagcagtcgttccactcgacctttcagtggctttgacccagatgacatgga 263322777
Query: 656 tgtggatgaagatgaggacccatttggcgcttttggccgctttggcttcaatgggctgag 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263322778 tgtggatgaagatgaggacccatttggcgcttttggccgctttggcttcaatgggctgag 263322837
Query: 716 tagaggtccgaggcgagccccagaaccactttaccctcggcgcaaggtgcaggacccacc 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263322838 tagaggtccgaggcgagccccagaaccactttaccctcggcgcaaggtgcaggacccacc 263322897
Query: 776 tgtggtgcatgagctgagggtatccctggaggaaatctaccacggctccaccaaacgcat 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263322898 tgtggtgcatgagctgagggtatccctggaggaaatctaccacggctccaccaaacgcat 263322957
Query: 836 gaagatcacaaggcggcgcctcaaccctgacgggagaactgtacgcaccgaggacaagat 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263322958 gaagatcacaaggcggcgcctcaaccctgacgggagaactgtacgcaccgaggacaagat 263323017
Query: 896 cctacacattgtcatcaagcgtggctggaaggaaggcaccaagatcaccttccccaaaga 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263323018 cctacacattgtcatcaagcgtggctggaaggaaggcaccaagatcaccttccccaaaga 263323077
Query: 956 gggcgatgccacacctgacaacatccctgccgacatcgtcttcgtgctcaaagacaagcc 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263323078 gggcgatgccacacctgacaacatccctgccgacatcgtcttcgtgctcaaagacaagcc 263323137
Query: 1016 ccatgcacacttccgccgagatggcacc-atgtgctctacagcgccctgatcagcc 1070
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 263323138 ccatgcacacttccgccgagatggcaccaatgtgctctacagcgccctgatcagcc 263323193
Score = 490 bits (247), Expect = e-136
Identities = 247/247 (100%)
Strand = Plus / Plus
Query: 232 gaaacaaggagaccagtgccggtccagtggctgtgatggggaaggattactacaagattc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263319561 gaaacaaggagaccagtgccggtccagtggctgtgatggggaaggattactacaagattc 263319620
Query: 292 ttggaattccgtcgggagccaacgaagatgagatcaagaaagcctatcgaaaaatggcat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263319621 ttggaattccgtcgggagccaacgaagatgagatcaagaaagcctatcgaaaaatggcat 263319680
Query: 352 tgaagtaccacccagacaagaacaaagaacccaatgctgaagagaagtttaaggagattg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263319681 tgaagtaccacccagacaagaacaaagaacccaatgctgaagagaagtttaaggagattg 263319740
Query: 412 ctgaggcctatgatgtgctgagtgaccctaagaaacggggcctgtatgaccaatatgggg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263319741 ctgaggcctatgatgtgctgagtgaccctaagaaacggggcctgtatgaccaatatgggg 263319800
Query: 472 aggaagg 478
|||||||
Sbjct: 263319801 aggaagg 263319807
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 90 gcacccccactacaggcccgaggagctttccggagcttcccacacttctggggagaagac 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263317046 gcacccccactacaggcccgaggagctttccggagcttcccacacttctggggagaagac 263317105
Query: 150 ttcttagccagcttgatgtttaaaattcagctggagcccttaaaacttcgagcgtggacg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263317106 ttcttagccagcttgatgtttaaaattcagctggagcccttaaaacttcgagcgtggacg 263317165
Query: 210 ctgaatgggtttgtaaagtttcg 232
|||||||||||||||||||||||
Sbjct: 263317166 ctgaatgggtttgtaaagtttcg 263317188
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 2 ctgtcccgagtggaggcggcggagccggagccgggtgagggggcagcggctgtctgacgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263316134 ctgtcccgagtggaggcggcggagccggagccgggtgagggggcagcggctgtctgacgg 263316193
Query: 62 accgcggtggcgcccgcagctcctcaccg 90
|||||||||||||||||||||||||||||
Sbjct: 263316194 accgcggtggcgcccgcagctcctcaccg 263316222
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1077 aggcactgtgtggctgcaccgtgaacattcccaccattgatggccgagtgatccctttgc 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263323336 aggcactgtgtggctgcaccgtgaacattcccaccattgatggccgagtgatccctttgc 263323395
Query: 1137 cc 1138
||
Sbjct: 263323396 cc 263323397
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,498,373
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 5
Length of query: 1138
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1117
Effective length of database: 2,808,413,156
Effective search space: 3136997495252
Effective search space used: 3136997495252
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)