Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007854
(1939 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002694661.1| PREDICTED: KIAA1671 protein-like [Bos taurus]. 365 e-118
Alignment gi|XP_613438.3| PREDICTED: KIAA1671 protein-like [Bos taurus]. 363 e-117
Alignment gi|XP_002693759.1| PREDICTED: tankyrase 1 binding protein 1, 18... 64 6e-13
Alignment gi|XP_002701466.1| PREDICTED: tankyrase 1 binding protein 1, 18... 64 6e-13
Alignment gi|XP_001253000.2| PREDICTED: KIAA1671 protein-like [Bos taurus]. 55 3e-07
>ref|XP_002694661.1| PREDICTED: KIAA1671 protein-like [Bos taurus].
Length = 1800
Score = 365 bits (936), Expect(2) = e-118
Identities = 187/250 (74%), Positives = 194/250 (77%)
Frame = +3
Query: 222 DQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAPESPSPDSSATSTRKQAP 401
DQLKQCFSRRTPEAKDTDTLVQE DSQYGTWPDQRQSGESLAPESPSPDSSA S KQ P
Sbjct: 1505 DQLKQCFSRRTPEAKDTDTLVQETDSQYGTWPDQRQSGESLAPESPSPDSSAASAWKQPP 1564
Query: 402 XXXXXXXXXQTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDGTEGPLPPDISPSKRVDD 581
QTE TS GDQHDCSR+QRSTSVDRSSTDLESTDG EGP PPD P+K+VDD
Sbjct: 1565 SSRLSSLSSQTEVTSAGDQHDCSREQRSTSVDRSSTDLESTDGMEGPPPPDACPAKKVDD 1624
Query: 582 FSFIDQTSVLDSSALKTRVQLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADSAWMFR 761
F FIDQTSVLDSSALKTRVQLSK ADSAWMFR
Sbjct: 1625 FPFIDQTSVLDSSALKTRVQLSKRSRRRAPTAHSLRRSRTSEPDGRSAWEEEADSAWMFR 1684
Query: 762 DSTEEKSPRKEESDEEEKPFRAERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGET 941
DSTEEKSPRKEESDEEE+ RAERTP+SRPQRMPVFPG+DPAALKAQL+KRP D P ET
Sbjct: 1685 DSTEEKSPRKEESDEEERTPRAERTPVSRPQRMPVFPGVDPAALKAQLYKRP--DSPNET 1742
Query: 942 PGWAPQPKTP 971
PGWAPQPKTP
Sbjct: 1743 PGWAPQPKTP 1752
Score = 79.3 bits (194), Expect(2) = e-118
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +1
Query: 991 VLGSRVLPSSVEKDERSEEPSPQWLKELKSKKRQSLCENQA 1113
VLGSRVLPSS+EKDERSEEPSPQWLKELKSKKRQSL ENQA
Sbjct: 1760 VLGSRVLPSSMEKDERSEEPSPQWLKELKSKKRQSLYENQA 1800
>ref|XP_613438.3| PREDICTED: KIAA1671 protein-like [Bos taurus].
Length = 339
Score = 363 bits (933), Expect(2) = e-117
Identities = 186/250 (74%), Positives = 194/250 (77%)
Frame = +3
Query: 222 DQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAPESPSPDSSATSTRKQAP 401
DQLKQCFSRRTPEAKDTDTLVQE DSQYGTWPDQRQSGESLAPESPSPDSSA S KQ P
Sbjct: 44 DQLKQCFSRRTPEAKDTDTLVQETDSQYGTWPDQRQSGESLAPESPSPDSSAASAWKQPP 103
Query: 402 XXXXXXXXXQTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDGTEGPLPPDISPSKRVDD 581
QTE TS GDQHDCSR+QRSTSVDRSSTDLESTDG EGP PPD P+K+VDD
Sbjct: 104 SSRLSSLSSQTEVTSAGDQHDCSREQRSTSVDRSSTDLESTDGMEGPPPPDACPAKKVDD 163
Query: 582 FSFIDQTSVLDSSALKTRVQLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADSAWMFR 761
F FIDQTSVLDSSALKTRVQLSK ADSAWMFR
Sbjct: 164 FPFIDQTSVLDSSALKTRVQLSKRSRRRAPTAHSLRRSRTSEPDGRSAWEEEADSAWMFR 223
Query: 762 DSTEEKSPRKEESDEEEKPFRAERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGET 941
DSTEEKSPRKEESDEEE+ RAERTP++RPQRMPVFPG+DPAALKAQL+KRP D P ET
Sbjct: 224 DSTEEKSPRKEESDEEERTPRAERTPVNRPQRMPVFPGVDPAALKAQLYKRP--DSPNET 281
Query: 942 PGWAPQPKTP 971
PGWAPQPKTP
Sbjct: 282 PGWAPQPKTP 291
Score = 79.3 bits (194), Expect(2) = e-117
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +1
Query: 991 VLGSRVLPSSVEKDERSEEPSPQWLKELKSKKRQSLCENQA 1113
VLGSRVLPSS+EKDERSEEPSPQWLKELKSKKRQSL ENQA
Sbjct: 299 VLGSRVLPSSMEKDERSEEPSPQWLKELKSKKRQSLYENQA 339
>ref|XP_002693759.1| PREDICTED: tankyrase 1 binding protein 1, 182kDa [Bos taurus].
Length = 1653
Score = 63.9 bits (154), Expect(2) = 6e-13
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 11/217 (5%)
Frame = +3
Query: 321 QRQSGESLAPESPSP----DSSATSTRKQAPXXXXXXXXXQTEATSIGDQHDCS----RD 476
Q Q GE LA SP +S++ +R + E G S D
Sbjct: 1389 QGQPGERLAAHSPEATAPRESASLGSRAPLEEEGAAAGADRVEPREPGQDPLPSWRPQPD 1448
Query: 477 QRSTSVDRSSTDLESTDGTEGPLPPDISP-SKRVDDFSFIDQTSVLDSSALKTRVQLSKX 653
++ D + ++T ++G P P S DFSFI+ T +LDS+ ++R L +
Sbjct: 1449 GEASWTDAVHSTRDATGASQGEQTPQGPPTSTPSQDFSFIEDTEILDSAMYRSRANLGRK 1508
Query: 654 XXXXXXXXXXXXXXXXXXXXXXXXXXXXADSAWMFRDSTEEKSPRKEESDEE--EKPFRA 827
A A +F+DSTE ++ + SDEE E+P +
Sbjct: 1509 RGHRAPAIRPGGTLGLSEAA--------ASDARLFQDSTEPRASQTPSSDEEVVEEP-QN 1559
Query: 828 ERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGE 938
RT +++ ++ +FPG+ P+ALKA+L R + GE
Sbjct: 1560 RRTRVTKGLKVSLFPGLSPSALKAKLRSRNRSADEGE 1596
Score = 29.6 bits (65), Expect(2) = 6e-13
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 1009 LPSSVEKDERSEEPSPQWLKELKSKKRQ 1092
LP +K SE SP WL+ LK KK++
Sbjct: 1625 LPPKPDKSSGSEGSSPNWLQALKLKKKK 1652
>ref|XP_002701466.1| PREDICTED: tankyrase 1 binding protein 1, 182kDa [Bos taurus].
Length = 1653
Score = 63.9 bits (154), Expect(2) = 6e-13
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 11/217 (5%)
Frame = +3
Query: 321 QRQSGESLAPESPSP----DSSATSTRKQAPXXXXXXXXXQTEATSIGDQHDCS----RD 476
Q Q GE LA SP +S++ +R + E G S D
Sbjct: 1389 QGQPGERLAAHSPEATAPRESASLGSRAPLEEEGAAAGADRVEPREPGQDPLPSWRPQPD 1448
Query: 477 QRSTSVDRSSTDLESTDGTEGPLPPDISP-SKRVDDFSFIDQTSVLDSSALKTRVQLSKX 653
++ D + ++T ++G P P S DFSFI+ T +LDS+ ++R L +
Sbjct: 1449 GEASWTDAVHSTRDATGASQGEQTPQGPPTSTPSQDFSFIEDTEILDSAMYRSRANLGRK 1508
Query: 654 XXXXXXXXXXXXXXXXXXXXXXXXXXXXADSAWMFRDSTEEKSPRKEESDEE--EKPFRA 827
A A +F+DSTE ++ + SDEE E+P +
Sbjct: 1509 RGHRAPAIRPGGTLGLSEAA--------ASDARLFQDSTEPRASQTPSSDEEVVEEP-QN 1559
Query: 828 ERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGE 938
RT +++ ++ +FPG+ P+ALKA+L R + GE
Sbjct: 1560 RRTRVTKGLKVSLFPGLSPSALKAKLRSRNRSADEGE 1596
Score = 29.6 bits (65), Expect(2) = 6e-13
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 1009 LPSSVEKDERSEEPSPQWLKELKSKKRQ 1092
LP +K SE SP WL+ LK KK++
Sbjct: 1625 LPPKPDKSSGSEGSSPNWLQALKLKKKK 1652
>ref|XP_001253000.2| PREDICTED: KIAA1671 protein-like [Bos taurus].
Length = 1687
Score = 54.7 bits (130), Expect = 3e-07
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = +3
Query: 15 GHLAGPLATSRPLNDSCRLELDSCVTSR 98
GH A PLA SRPLNDSCRLELDSCVTSR
Sbjct: 1642 GHPASPLAASRPLNDSCRLELDSCVTSR 1669
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 83,673,498
Number of extensions: 2845511
Number of successful extensions: 17791
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 17319
Number of HSP's successfully gapped: 11
Length of query: 646
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 537
Effective length of database: 14,074,782
Effective search space: 7558157934
Effective search space used: 7558157934
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007854
(1939 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854551.1| PREDICTED: similar to tankyrase 1-binding prote... 357 e-115
Alignment gi|XP_540615.2| PREDICTED: similar to 182 kDa tankyrase 1-bindi... 59 1e-08
>ref|XP_854551.1| PREDICTED: similar to tankyrase 1-binding protein of 182 kDa [Canis
familiaris].
Length = 391
Score = 357 bits (916), Expect(2) = e-115
Identities = 185/251 (73%), Positives = 192/251 (76%), Gaps = 1/251 (0%)
Frame = +3
Query: 222 DQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAPESPSPDSSATSTRKQAP 401
DQLKQCFSRR PEAKDTDTLVQEADSQYGTW DQRQSGESLAPESPSPDSSATS RKQ P
Sbjct: 96 DQLKQCFSRRPPEAKDTDTLVQEADSQYGTWTDQRQSGESLAPESPSPDSSATSARKQLP 155
Query: 402 XXXXXXXXXQTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDGTEGPLPPDISPSKRVDD 581
QTEATS G+Q CSRDQRSTS+DRSSTDLESTDG EG PPD P+KRVDD
Sbjct: 156 SSRLSSLSSQTEATSAGEQLSCSRDQRSTSIDRSSTDLESTDGMEGLPPPDACPAKRVDD 215
Query: 582 FSFIDQTSVLDSSALKTRVQLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADSAWMFR 761
FSFIDQTSVLDSSALKTRVQLSK AD+AWMF+
Sbjct: 216 FSFIDQTSVLDSSALKTRVQLSKRSRRRAPISHSLRRSRVSESESRSPLEEEADNAWMFK 275
Query: 762 DSTEEKSPRKEESD-EEEKPFRAERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGE 938
DSTEEKSPR+EESD EEEKP RAERTP S QRMPVFPGMDPA LKAQLHKRPE D P +
Sbjct: 276 DSTEEKSPRREESDEEEEKPSRAERTPSSHLQRMPVFPGMDPAVLKAQLHKRPEVDSPSD 335
Query: 939 TPGWAPQPKTP 971
TPGWAPQPKTP
Sbjct: 336 TPGWAPQPKTP 346
Score = 77.8 bits (190), Expect(2) = e-115
Identities = 38/40 (95%), Positives = 39/40 (97%)
Frame = +1
Query: 994 LGSRVLPSSVEKDERSEEPSPQWLKELKSKKRQSLCENQA 1113
LGSRVLPSS+EKDERSEEPSPQWLKELKSKKRQSL ENQA
Sbjct: 352 LGSRVLPSSMEKDERSEEPSPQWLKELKSKKRQSLYENQA 391
>ref|XP_540615.2| PREDICTED: similar to 182 kDa tankyrase 1-binding protein [Canis
familiaris].
Length = 1748
Score = 59.3 bits (142), Expect = 1e-08
Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 6/204 (2%)
Frame = +3
Query: 546 PPDISPSKRVDDFSFIDQTSVLDSSALKTRVQLSKXXXXXXXXXXXXXXXXXXXXXXXXX 725
PP SPS+ DFSFI+ T +LDS+ ++R L +
Sbjct: 1567 PPPRSPSQ---DFSFIEDTEILDSAMYRSRANLGRKRGHRAPAIRPGGTLGLSEA----- 1618
Query: 726 XXXXADS-AWMFRDSTEEKSPRKEESDEE--EKPFRAERTPIS---RPQRMPVFPGMDPA 887
ADS A +F+DSTE ++ R SDEE E+P + RT +S + ++ +FPG+ P+
Sbjct: 1619 ----ADSDARLFQDSTEPRASRVPSSDEEVVEEP-QNRRTRMSLGTKGLKVNLFPGLSPS 1673
Query: 888 ALKAQLHKRPEADGPGETPGWAPQPKTPVPLPAWGAGQPRAAVQCGEGREIGGAFSPVAK 1067
ALKA+L R + GE+ P Q +AVQ + ++ G P+A
Sbjct: 1674 ALKAKLRPRNRSAEEGESAENKP-------------SQKESAVQRSKSCKVPGLGKPLA- 1719
Query: 1068 GAEIQEEAKPV*ESSLSRQGTLPH 1139
P E S +G+ P+
Sbjct: 1720 -------LPPKPEKSSGSEGSSPN 1736
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 87,406,623
Number of extensions: 2938172
Number of successful extensions: 18240
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 17771
Number of HSP's successfully gapped: 4
Length of query: 646
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 537
Effective length of database: 15,240,880
Effective search space: 8184352560
Effective search space used: 8184352560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007854
(1939 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359189.1| PREDICTED: uncharacterized protein KIAA1671 ... 416 e-135
Alignment gi|XP_003353914.1| PREDICTED: 182 kDa tankyrase-1-binding prote... 62 2e-13
>ref|XP_003359189.1| PREDICTED: uncharacterized protein KIAA1671 [Sus scrofa].
Length = 1820
Score = 416 bits (1069), Expect(2) = e-135
Identities = 211/249 (84%), Positives = 211/249 (84%)
Frame = +3
Query: 222 DQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAPESPSPDSSATSTRKQAP 401
DQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAPESPSPDSSATSTRKQAP
Sbjct: 1523 DQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAPESPSPDSSATSTRKQAP 1582
Query: 402 XXXXXXXXXQTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDGTEGPLPPDISPSKRVDD 581
QTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDGTEGPLPPDISPSKRVDD
Sbjct: 1583 SSRLSSLSSQTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDGTEGPLPPDISPSKRVDD 1642
Query: 582 FSFIDQTSVLDSSALKTRVQLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADSAWMFR 761
FSFIDQTSVLDSSALKTRVQLSK ADSAWMFR
Sbjct: 1643 FSFIDQTSVLDSSALKTRVQLSKRSRRRAPLSHPRRRSRVSESESRSPLEEEADSAWMFR 1702
Query: 762 DSTEEKSPRKEESDEEEKPFRAERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGET 941
DSTEEKSPRKEESDEEEKPFRAERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGET
Sbjct: 1703 DSTEEKSPRKEESDEEEKPFRAERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGET 1762
Query: 942 PGWAPQPKT 968
PGWAPQPKT
Sbjct: 1763 PGWAPQPKT 1771
Score = 84.7 bits (208), Expect(2) = e-135
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +1
Query: 991 VLGSRVLPSSVEKDERSEEPSPQWLKELKSKKRQSLCENQA 1113
VLGSRVLPSSVEKDERSEEPSPQWLKELKSKKRQSLCENQA
Sbjct: 1780 VLGSRVLPSSVEKDERSEEPSPQWLKELKSKKRQSLCENQA 1820
>ref|XP_003353914.1| PREDICTED: 182 kDa tankyrase-1-binding protein [Sus scrofa].
Length = 1723
Score = 62.4 bits (150), Expect(2) = 2e-13
Identities = 68/257 (26%), Positives = 105/257 (40%), Gaps = 35/257 (13%)
Frame = +3
Query: 273 DTLVQEADSQYGTWPDQRQS-GESLAPESPS-----------PDSSATSTRKQAPXXXXX 416
+T ++ + G P R S G A SPS SS + R+++
Sbjct: 1421 ETCPEDHEMDVGESPGFRASLGGCPARSSPSGSQALLEAMLAASSSKAAARRESAGSGPR 1480
Query: 417 XXXXQTEATSIGDQHDCSRDQRST------SVDRSSTDLESTDGTEGPL----------- 545
+ AT+ DQ + R D ++ E DGT P
Sbjct: 1481 DLLEEEGATAGADQGESLEPGRDPLPSWRPQPDGEASRTEEVDGTWAPAGAGQSEQGSRR 1540
Query: 546 ----PPDISPSKRVDDFSFIDQTSVLDSSALKTRVQLSKXXXXXXXXXXXXXXXXXXXXX 713
PP SPS+ DFSFI+ T +LDS+ ++R L +
Sbjct: 1541 LPQGPPASSPSQ---DFSFIEDTEILDSAMYRSRANLGRKRGHRAPAIRPGGTLGLSEAA 1597
Query: 714 XXXXXXXXADSAWMFRDSTEEKSPRKEESDEE--EKPFRAERTPISRPQRMPVFPGMDPA 887
+DS +F+DSTE ++ R SDEE E+P + RT +++ ++ +FPG+ P+
Sbjct: 1598 E-------SDSR-LFQDSTEPRASRVPSSDEEVVEEP-QNRRTRMTKGLKVNLFPGLSPS 1648
Query: 888 ALKAQLHKRPEADGPGE 938
ALKA+L R + GE
Sbjct: 1649 ALKAKLRSRNRSADEGE 1665
Score = 32.3 bits (72), Expect(2) = 2e-13
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 1006 VLPSSVEKDERSEEPSPQWLKELKSKKRQ 1092
VLP EK SE SP WL+ LK KK++
Sbjct: 1694 VLPPKPEKSSGSEGSSPNWLQALKLKKKK 1722
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 54,151,077
Number of extensions: 1849067
Number of successful extensions: 11644
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11305
Number of HSP's successfully gapped: 5
Length of query: 646
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 541
Effective length of database: 8,729,747
Effective search space: 4722793127
Effective search space used: 4722793127
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007854
(1939 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766472.1| hypothetical protein LOC243219 [Mus musculus]. 328 e-104
Alignment gi|NP_001074729.1| 182 kDa tankyrase-1-binding protein [Mus mus... 56 4e-11
>ref|NP_766472.1| hypothetical protein LOC243219 [Mus musculus].
Length = 308
Score = 328 bits (841), Expect(2) = e-104
Identities = 172/267 (64%), Positives = 193/267 (72%)
Frame = +3
Query: 171 MEYYYCPSLLKLLRYLWDQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAP 350
M+YYYCPSLLKLLRYLW+QLKQCFSRR PEAKDTDTLVQEADSQYGTW DQ Q+G S P
Sbjct: 1 MDYYYCPSLLKLLRYLWNQLKQCFSRRAPEAKDTDTLVQEADSQYGTWADQHQNGGSFGP 60
Query: 351 ESPSPDSSATSTRKQAPXXXXXXXXXQTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDG 530
ESPSPDSSA S KQ P TE+TS+ +Q D SRD+RS+SVDRSS++LESTDG
Sbjct: 61 ESPSPDSSAASVGKQPP---GSHLSSYTESTSV-EQRDSSRDRRSSSVDRSSSELESTDG 116
Query: 531 TEGPLPPDISPSKRVDDFSFIDQTSVLDSSALKTRVQLSKXXXXXXXXXXXXXXXXXXXX 710
EGP P D+ P++ DDFSFI QTSVLDSSALKTRVQLSK
Sbjct: 117 PEGPPPSDVCPAQE-DDFSFIHQTSVLDSSALKTRVQLSKRSRRRAPISHSLRRSQFSES 175
Query: 711 XXXXXXXXXADSAWMFRDSTEEKSPRKEESDEEEKPFRAERTPISRPQRMPVFPGMDPAA 890
+ S WMF+DSTEEKSPR++ESDEE P R ERTP+S PQRMPVFPGMDPA
Sbjct: 176 ESRSPLEEESHSTWMFKDSTEEKSPRRDESDEE--PPRVERTPVSHPQRMPVFPGMDPAV 233
Query: 891 LKAQLHKRPEADGPGETPGWAPQPKTP 971
LKAQL KR E D PG++ W PQPK+P
Sbjct: 234 LKAQLPKRSEVDSPGDSLSWTPQPKSP 260
Score = 71.6 bits (174), Expect(2) = e-104
Identities = 36/41 (87%), Positives = 37/41 (90%)
Frame = +1
Query: 991 VLGSRVLPSSVEKDERSEEPSPQWLKELKSKKRQSLCENQA 1113
VLGSRVLP S EK+ERSEE SPQWLKELKSKKRQSL ENQA
Sbjct: 268 VLGSRVLPPSTEKEERSEECSPQWLKELKSKKRQSLYENQA 308
>ref|NP_001074729.1| 182 kDa tankyrase-1-binding protein [Mus musculus].
Length = 1720
Score = 56.2 bits (134), Expect(2) = 4e-11
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Frame = +3
Query: 546 PPDISPSKRVDDFSFIDQTSVLDSSALKTRVQLSKXXXXXXXXXXXXXXXXXXXXXXXXX 725
P + PS +DFSFI+ T +LDS+ ++R L +
Sbjct: 1536 PRGLLPSCPSEDFSFIEDTEILDSAMYRSRANLGRKRGHRAPAIRPGGTLGLSET----- 1590
Query: 726 XXXXADS-AWMFRDSTEEKSPRKEESDEE--EKPFRAERTPIS---RPQRMPVFPGMDPA 887
ADS +F+DSTE ++ R SDEE E+P ++ RT +S + ++ +FPG+ P+
Sbjct: 1591 ----ADSDTRLFQDSTEPRASRVPSSDEEVVEEP-QSRRTRMSLGTKGLKVNLFPGLSPS 1645
Query: 888 ALKAQLHKRPEADGPGE 938
ALKA+L R + GE
Sbjct: 1646 ALKAKLRSRNRSAEEGE 1662
Score = 30.8 bits (68), Expect(2) = 4e-11
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 1009 LPSSVEKDERSEEPSPQWLKELKSKKRQ 1092
LP EK SE SP WL+ LK KK++
Sbjct: 1692 LPPKPEKSSGSEGSSPNWLQALKLKKKK 1719
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 71,744,187
Number of extensions: 2334005
Number of successful extensions: 13357
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 12981
Number of HSP's successfully gapped: 5
Length of query: 646
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 538
Effective length of database: 12,373,671
Effective search space: 6657034998
Effective search space used: 6657034998
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007854
(1939 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138678.1| hypothetical protein LOC85379 [Homo sapiens]. 337 e-108
Alignment gi|NP_203754.2| 182 kDa tankyrase-1-binding protein [Homo sapie... 58 1e-11
>ref|NP_001138678.1| hypothetical protein LOC85379 [Homo sapiens].
Length = 1806
Score = 337 bits (863), Expect(2) = e-108
Identities = 174/250 (69%), Positives = 182/250 (72%)
Frame = +3
Query: 222 DQLKQCFSRRTPEAKDTDTLVQEADSQYGTWPDQRQSGESLAPESPSPDSSATSTRKQAP 401
DQLKQCFSR+ E KDTDTLV EA SQYGTW +Q QSGESLA ESP DSSATSTRKQ P
Sbjct: 1511 DQLKQCFSRQPTEPKDTDTLVHEAGSQYGTWTEQCQSGESLATESP--DSSATSTRKQPP 1568
Query: 402 XXXXXXXXXQTEATSIGDQHDCSRDQRSTSVDRSSTDLESTDGTEGPLPPDISPSKRVDD 581
QTE TS GDQ+DCSRDQRSTSVD SSTDLESTDG EGP PPD P KRVDD
Sbjct: 1569 SSRLSSLSSQTEPTSAGDQYDCSRDQRSTSVDHSSTDLESTDGMEGPPPPDACPEKRVDD 1628
Query: 582 FSFIDQTSVLDSSALKTRVQLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADSAWMFR 761
FSFIDQTSVLDSSALKTRVQLSK D+ WMF+
Sbjct: 1629 FSFIDQTSVLDSSALKTRVQLSKRSRRRAPISHSLRRSRFSESESRSPLEDETDNTWMFK 1688
Query: 762 DSTEEKSPRKEESDEEEKPFRAERTPISRPQRMPVFPGMDPAALKAQLHKRPEADGPGET 941
DSTEEKSPRKEESDEEE +AERTP+S PQRMP FPGMDPA LKAQLHKRPE D PGET
Sbjct: 1689 DSTEEKSPRKEESDEEETASKAERTPVSHPQRMPAFPGMDPAVLKAQLHKRPEVDSPGET 1748
Query: 942 PGWAPQPKTP 971
P WAPQPK+P
Sbjct: 1749 PSWAPQPKSP 1758
Score = 75.5 bits (184), Expect(2) = e-108
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = +1
Query: 991 VLGSRVLPSSVEKDERSEEPSPQWLKELKSKKRQSLCENQ 1110
VLGSRVLPSS++KDERS+EPSPQWLKELKSKKRQSL ENQ
Sbjct: 1766 VLGSRVLPSSMDKDERSDEPSPQWLKELKSKKRQSLYENQ 1805
>ref|NP_203754.2| 182 kDa tankyrase-1-binding protein [Homo sapiens].
Length = 1729
Score = 58.2 bits (139), Expect(2) = 1e-11
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Frame = +3
Query: 546 PPDISPSKRVDDFSFIDQTSVLDSSALKTRVQLSKXXXXXXXXXXXXXXXXXXXXXXXXX 725
PP SPS+ DFSFI+ T +LDS+ ++R L +
Sbjct: 1548 PPARSPSQ---DFSFIEDTEILDSAMYRSRANLGRKRGHRAPVIRPGGTLGLSEA----- 1599
Query: 726 XXXXADS-AWMFRDSTEEKSPRKEESDEE--EKPFRAERTPIS---RPQRMPVFPGMDPA 887
ADS A +F+DSTE ++ R SDEE E+P ++ RT +S + ++ +FPG+ P+
Sbjct: 1600 ----ADSDAHLFQDSTEPRASRVPSSDEEVVEEP-QSRRTRMSLGTKGLKVNLFPGLSPS 1654
Query: 888 ALKAQLHKRPEADGPGE 938
ALKA+L R + GE
Sbjct: 1655 ALKAKLRPRNRSAEEGE 1671
Score = 30.8 bits (68), Expect(2) = 1e-11
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 1009 LPSSVEKDERSEEPSPQWLKELKSKKRQ 1092
LP EK SE SP WL+ LK KK++
Sbjct: 1701 LPPKPEKSSGSEGSSPNWLQALKLKKKK 1728
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 85,402,392
Number of extensions: 2840994
Number of successful extensions: 16924
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 16466
Number of HSP's successfully gapped: 5
Length of query: 646
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 537
Effective length of database: 14,704,088
Effective search space: 7896095256
Effective search space used: 7896095256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007854
(1939 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1515 0.0
gb|GL892516.2| Sus scrofa unplaced genomic scaffold ChrUScaf403 392 e-106
>Sscrofa_Chr14
|| Length = 153851969
Score = 1515 bits (764), Expect = 0.0
Identities = 791/799 (98%), Gaps = 1/799 (0%)
Strand = Plus / Plus
Query: 1118 cagacaggggacactgccacatctaatgaacaagccttaactgtcagaacccgaagccga 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45896030 cagacaggggacactgccacatctaatgaacaagccttaactgtcagaacccgaagccga 45896089
Query: 1178 ggccatgccgctgcgtcccttcctgcacatgcctgggcccttctggtcggtggcagggag 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45896090 ggccatgccgctgcgtcccttcctgcacatgcctgggcccttctggtcggtggcagggag 45896149
Query: 1238 aacactgcccagcgcctacccctcagcaggctctcctgaatggatggggcaggaaggctt 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45896150 aacactgcccagcgcctacccctcagcaggctctcctgaatggatggggcaggaaggctt 45896209
Query: 1298 atcctccacaggcactgtcaccgcctcccagacagcacctccggctgggaaagaatccag 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45896210 atcctccacaggcactgtcaccgcctcccagacagcacctccggctgggaaagaatccag 45896269
Query: 1358 gcggcccagaaa-atccacgctggcaggggtttggttttggttttacgtaaaaatgtgct 1416
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45896270 gcggcccagaaacatccacgctggcaggggtttggttttggttttacgtaaaaatgtgct 45896329
Query: 1417 tttctccccatttttgacccctgcagtagcaccatgaatggggatgtaaggctggcccat 1476
||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 45896330 tttcttcccatttttgacccctgcagtagcaccatgaatggggatgtgaggctgacccat 45896389
Query: 1477 ctctcctgggtcctgagtctgaaaacatcccttttcctccaaccccaggtctggtctttt 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45896390 ctctcctgggtcctgagtctgaaaacatcccttttcctccaaccccaggtctggtctttt 45896449
Query: 1537 tcaaaaggacgttttcaaggaagatgaaaccatgcatttcctgctgtaactgtggtccaa 1596
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45896450 ttaaaaggacgttttcaaggaagatgaaaccatgcatttcctgctgtaactgtggtccaa 45896509
Query: 1597 agcagcattgctgggttgggggttttgattcctcctttgcgggggtacttctccctcttg 1656
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 45896510 agcagcattgctgggttgggggttttgattcctcctttgcaggggtacttctccctcttg 45896569
Query: 1657 aagaatcagaagttccgatctttaaacacccaccctcattctttcaagagtatttatcct 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45896570 aagaatcagaagttccgatctttaaacacccaccctcattctttcaagagtatttatcct 45896629
Query: 1717 ccccacggggctggtgcagagctggcctgttccattgtacgtcatcgtgtttgctttcga 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45896630 ccccacggggctggtgcagagctggcctgttccattgtacgtcatcgtgtttgctttcga 45896689
Query: 1777 aggtgataaagcaataatgcagccaactttctttgaaatttgatatgtatatacgttttg 1836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45896690 aggtgataaagcaataatgcagccaactttctttgaaatttgatatgtatatacgttttg 45896749
Query: 1837 acgcgaaagaacagggggagaggcgtgcgaacagtttgcttgaaagtatctgatcatctc 1896
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45896750 acgtgaaagaacagggggagaggcgtgcgaacagtttgcttgaaagtatctgatcatctc 45896809
Query: 1897 angttatcttatccctacc 1915
| |||||||||||||||||
Sbjct: 45896810 aggttatcttatccctacc 45896828
Score = 511 bits (258), Expect = e-142
Identities = 258/258 (100%)
Strand = Plus / Plus
Query: 339 agcttagcccctgagtccccatcgcctgatagcagtgccacatcgactcggaagcaggcc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45885296 agcttagcccctgagtccccatcgcctgatagcagtgccacatcgactcggaagcaggcc 45885355
Query: 399 cccagcagccgcttgtcctcactgtcctcccaaacggaggccacctcgatcggggatcag 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45885356 cccagcagccgcttgtcctcactgtcctcccaaacggaggccacctcgatcggggatcag 45885415
Query: 459 catgactgttccagggaccagcggagcaccagtgtggaccgatccagcaccgacctggaa 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45885416 catgactgttccagggaccagcggagcaccagtgtggaccgatccagcaccgacctggaa 45885475
Query: 519 tccactgacgggacagaagggccactcccaccagacatcagcccctcaaaaagggtggat 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45885476 tccactgacgggacagaagggccactcccaccagacatcagcccctcaaaaagggtggat 45885535
Query: 579 gacttctcctttatcgat 596
||||||||||||||||||
Sbjct: 45885536 gacttctcctttatcgat 45885553
Score = 432 bits (218), Expect = e-118
Identities = 221/222 (99%)
Strand = Plus / Plus
Query: 1 agtgctggttagcggggcatctggccggtcccctggccaccagccggcccctgaatgatt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45733872 agtgttggttagcggggcatctggccggtcccctggccaccagccggcccctgaatgatt 45733931
Query: 61 catgccgccttgaacttgactcctgcgtgacaagccgcaggcagagccgccccctccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45733932 catgccgccttgaacttgactcctgcgtgacaagccgcaggcagagccgccccctccaga 45733991
Query: 121 gggagactggaagctgcatgatgcaggcagcataacccagggcgccagaaatggagtatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45733992 gggagactggaagctgcatgatgcaggcagcataacccagggcgccagaaatggagtatt 45734051
Query: 181 attactgccccagcctgttgaagctcttgcggtacctctggg 222
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45734052 attactgccccagcctgttgaagctcttgcggtacctctggg 45734093
Score = 432 bits (218), Expect = e-118
Identities = 221/222 (99%)
Strand = Plus / Minus
Query: 1 agtgctggttagcggggcatctggccggtcccctggccaccagccggcccctgaatgatt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45969985 agtgttggttagcggggcatctggccggtcccctggccaccagccggcccctgaatgatt 45969926
Query: 61 catgccgccttgaacttgactcctgcgtgacaagccgcaggcagagccgccccctccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45969925 catgccgccttgaacttgactcctgcgtgacaagccgcaggcagagccgccccctccaga 45969866
Query: 121 gggagactggaagctgcatgatgcaggcagcataacccagggcgccagaaatggagtatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45969865 gggagactggaagctgcatgatgcaggcagcataacccagggcgccagaaatggagtatt 45969806
Query: 181 attactgccccagcctgttgaagctcttgcggtacctctggg 222
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45969805 attactgccccagcctgttgaagctcttgcggtacctctggg 45969764
Score = 347 bits (175), Expect = 1e-92
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 597 caaacctcagtcctcgactcaagtgccctcaagacccgcgtgcagctcagcaagagaagc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45888278 caaacctcagtcctcgactcaagtgccctcaagacccgcgtgcagctcagcaagagaagc 45888337
Query: 657 cgccgccgggcgcccctctcccatccccgccggcgaagccgagtcagcgagtcggagagc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45888338 cgccgccgggcgcccctctcccatccccgccggcgaagccgagtcagcgagtcggagagc 45888397
Query: 717 aggtcccccctggaggaggaggccgacagcgcgtggatgttcagggactccacag 771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45888398 aggtcccccctggaggaggaggccgacagcgcgtggatgttcagggactccacag 45888452
Score = 258 bits (130), Expect = 1e-65
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 768 acagaggagaaatcccccaggaaggaagagtcagatgaggaggagaagccattcagggct 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45888692 acagaggagaaatcccccaggaaggaagagtcagatgaggaggagaagccattcagggct 45888751
Query: 828 gagaggacgcccatcagccgaccccagaggatgcctgtgtttccaggcatggaccccgca 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45888752 gagaggacgcccatcagccgaccccagaggatgcctgtgtttccaggcatggaccccgca 45888811
Query: 888 gcactgaagg 897
||||||||||
Sbjct: 45888812 gcactgaagg 45888821
Score = 238 bits (120), Expect = 9e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 221 ggatcagctgaagcagtgtttctccaggcggacccccgaggccaaggacactgacaccct 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45762230 ggatcagctgaagcagtgtttctccaggcggacccccgaggccaaggacactgacaccct 45762289
Query: 281 cgtgcaggaagccgacagccagtatgggacgtggccagaccagcgccaaagtggggagag 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45762290 cgtgcaggaagccgacagccagtatgggacgtggccagaccagcgccaaagtggggagag 45762349
Score = 238 bits (120), Expect = 9e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 221 ggatcagctgaagcagtgtttctccaggcggacccccgaggccaaggacactgacaccct 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45880162 ggatcagctgaagcagtgtttctccaggcggacccccgaggccaaggacactgacaccct 45880221
Query: 281 cgtgcaggaagccgacagccagtatgggacgtggccagaccagcgccaaagtggggagag 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45880222 cgtgcaggaagccgacagccagtatgggacgtggccagaccagcgccaaagtggggagag 45880281
Score = 168 bits (85), Expect = 7e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1036 agatcggaggagccttctccccagtggctaaaggagctgaaatccaagaagaggcaaagc 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45895267 agatcggaggagccttctccccagtggctaaaggagctgaaatccaagaagaggcaaagc 45895326
Query: 1096 ctgtgtgagaatcaagcttgagcag 1120
|||||||||||||||||||||||||
Sbjct: 45895327 ctgtgtgagaatcaagcttgagcag 45895351
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 979 ttccagcctggggtgctgggcagccgcgtgctgccgtccagtgtggagaaggacgagag 1037
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45890817 ttccagcctggggtgctgggcagccgcgtgctgccgtccagtgtggagaaggacgagag 45890875
Score = 89.7 bits (45), Expect = 5e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 895 aggcccagctgcacaagaggccagaggcggacggacccggtgaga 939
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45890731 aggcccagctgcacaagaggccagaggcggacggacccggtgaga 45890775
>gb|GL892516.2| Sus scrofa unplaced genomic scaffold ChrUScaf403
Length = 66633
Score = 392 bits (198), Expect = e-106
Identities = 201/202 (99%)
Strand = Plus / Minus
Query: 10 tagcggggcatctggccggtcccctggccaccagccggcccctgaatgattcatgccgcc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60505 tagcggggcatctggccggtcccctggccaccagccggcccctgaatgattcatgccgcc 60446
Query: 70 ttgaacttgactcctgcgtgacaagccgcaggcagagccgccccctccagagggagactg 129
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60445 ttgaacttgactcctgcatgacaagccgcaggcagagccgccccctccagagggagactg 60386
Query: 130 gaagctgcatgatgcaggcagcataacccagggcgccagaaatggagtattattactgcc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60385 gaagctgcatgatgcaggcagcataacccagggcgccagaaatggagtattattactgcc 60326
Query: 190 ccagcctgttgaagctcttgcg 211
||||||||||||||||||||||
Sbjct: 60325 ccagcctgttgaagctcttgcg 60304
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,610,753
Number of extensions: 387
Number of successful extensions: 387
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 12
Length of query: 1939
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1917
Effective length of database: 2,808,408,574
Effective search space: 5383719236358
Effective search space used: 5383719236358
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)