Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007863
(1021 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095979.1| surfeit locus protein 4 [Bos taurus]. 480 e-136
>ref|NP_001095979.1| surfeit locus protein 4 [Bos taurus].
Length = 269
Score = 480 bits (1236), Expect = e-136
Identities = 241/269 (89%), Positives = 241/269 (89%)
Frame = +3
Query: 153 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN 332
MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
Sbjct: 1 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN 60
Query: 333 CGYLLASSFVFLNLLGQLTGCILVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN 512
CGYLLASSFVFLNLLGQLTGCILVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
Sbjct: 61 CGYLLASSFVFLNLLGQLTGCILVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN 120
Query: 513 XXXXXXXXXXXXESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF 692
ESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
Sbjct: 121 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF 180
Query: 693 SILQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF 872
SILQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
Sbjct: 181 SILQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF 240
Query: 873 QTMSXXXXXXXXXXXXXXXXSMDEKKKEW 959
QTMS SMDEKKKEW
Sbjct: 241 QTMSVIGGLLLVVALGPGGVSMDEKKKEW 269
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,273,504
Number of extensions: 728534
Number of successful extensions: 2918
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2909
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007863
(1021 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548390.2| PREDICTED: similar to Surfeit locus protein 4 [... 438 e-123
>ref|XP_548390.2| PREDICTED: similar to Surfeit locus protein 4 [Canis familiaris].
Length = 273
Score = 438 bits (1127), Expect = e-123
Identities = 219/253 (86%), Positives = 221/253 (87%)
Frame = +3
Query: 201 FLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWNCGYLLASSFVFLNLLG 380
FLRVTKQYLPHVARLCLISTFLEDG+RMWFQW EQRDYIDTTW CGY LAS+FV LNLLG
Sbjct: 21 FLRVTKQYLPHVARLCLISTFLEDGVRMWFQWGEQRDYIDTTWGCGYALASAFVLLNLLG 80
Query: 381 QLTGCILVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNXXXXXXXXXXXXESRS 560
QLTGCILVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN ESRS
Sbjct: 81 QLTGCILVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAESRS 140
Query: 561 EGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSILQNIVGTALMILVA 740
EGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSILQNIVGTALMILVA
Sbjct: 141 EGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSILQNIVGTALMILVA 200
Query: 741 IGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSXXXXXXXXXXXX 920
IGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMS
Sbjct: 201 IGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVVALG 260
Query: 921 XXXXSMDEKKKEW 959
SMDEKKKEW
Sbjct: 261 PGGVSMDEKKKEW 273
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,558,578
Number of extensions: 737487
Number of successful extensions: 2877
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2852
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007863
(1021 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362028.1| PREDICTED: surfeit locus protein 4-like, par... 223 1e-58
>ref|XP_003362028.1| PREDICTED: surfeit locus protein 4-like, partial [Sus scrofa].
Length = 296
Score = 223 bits (569), Expect = 1e-58
Identities = 120/160 (75%), Positives = 120/160 (75%)
Frame = +3
Query: 390 GCILVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNXXXXXXXXXXXXESRSEGK 569
GCILVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN ESRSEGK
Sbjct: 154 GCILVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAESRSEGK 213
Query: 570 SMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSILQNIVGTALMILVAIGF 749
SMFAGVPTMRESSPKQYMQLG LHFDASFFSILQNI
Sbjct: 214 SMFAGVPTMRESSPKQYMQLG---XXXXXXXXXLHFDASFFSILQNI------------- 257
Query: 750 KTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDF 869
LAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDF
Sbjct: 258 -XMLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDF 296
Score = 94.7 bits (234), Expect = 7e-20
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +3
Query: 198 QFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTT 326
QFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTT
Sbjct: 23 QFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTT 65
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,342,897
Number of extensions: 491290
Number of successful extensions: 1789
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1782
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007863
(1021 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035642.1| surfeit locus protein 4 [Mus musculus]. 477 e-135
>ref|NP_035642.1| surfeit locus protein 4 [Mus musculus].
Length = 269
Score = 477 bits (1228), Expect = e-135
Identities = 238/269 (88%), Positives = 241/269 (89%)
Frame = +3
Query: 153 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN 332
MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTW+
Sbjct: 1 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWS 60
Query: 333 CGYLLASSFVFLNLLGQLTGCILVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN 512
CGYLLASSFVFLNLLGQLTGC+LVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
Sbjct: 61 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN 120
Query: 513 XXXXXXXXXXXXESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF 692
ESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
Sbjct: 121 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF 180
Query: 693 SILQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF 872
SI+QNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
Sbjct: 181 SIIQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF 240
Query: 873 QTMSXXXXXXXXXXXXXXXXSMDEKKKEW 959
QTMS SMDEKKKEW
Sbjct: 241 QTMSVIGGLLLVVALGPGGVSMDEKKKEW 269
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,926,582
Number of extensions: 601813
Number of successful extensions: 2238
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2234
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007863
(1021 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_149351.1| surfeit locus protein 4 [Homo sapiens]. 479 e-135
>ref|NP_149351.1| surfeit locus protein 4 [Homo sapiens].
Length = 269
Score = 479 bits (1232), Expect = e-135
Identities = 239/269 (88%), Positives = 241/269 (89%)
Frame = +3
Query: 153 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN 332
MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN
Sbjct: 1 MGQNDLMGTAEDFADQFLRVTKQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWN 60
Query: 333 CGYLLASSFVFLNLLGQLTGCILVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN 512
CGYLLASSFVFLNLLGQLTGC+LVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN
Sbjct: 61 CGYLLASSFVFLNLLGQLTGCVLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRN 120
Query: 513 XXXXXXXXXXXXESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF 692
ESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF
Sbjct: 121 LALGGGLLLLLAESRSEGKSMFAGVPTMRESSPKQYMQLGGRVLLVLMFMTLLHFDASFF 180
Query: 693 SILQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF 872
SI+QNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF
Sbjct: 181 SIVQNIVGTALMILVAIGFKTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFF 240
Query: 873 QTMSXXXXXXXXXXXXXXXXSMDEKKKEW 959
QTMS SMDEKKKEW
Sbjct: 241 QTMSVIGGLLLVVALGPGGVSMDEKKKEW 269
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,874,334
Number of extensions: 717903
Number of successful extensions: 2605
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2602
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007863
(1021 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896220.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 258 5e-66
Sscrofa_Chr01 60 2e-06
>gb|GL896220.1| Sus scrofa unplaced genomic scaffold chrU_scaffold582
Length = 5464
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 507 aggaacctggccctgggaggcggcttgctgctgctcctggcggagtcgcgttccgaaggg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2875 aggaacctggccctgggaggcggcttgctgctgctcctggcggagtcgcgttccgaaggg 2816
Query: 567 aagagcatgttcgcgggcgtgcccaccatgcgcgagagctcccccaagcagtacatgcag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2815 aagagcatgttcgcgggcgtgcccaccatgcgcgagagctcccccaagcagtacatgcag 2756
Query: 627 ctggggggca 636
||||||||||
Sbjct: 2755 ctggggggca 2746
Score = 252 bits (127), Expect = 3e-64
Identities = 130/131 (99%)
Strand = Plus / Minus
Query: 198 cagttcctgcgcgtcaccaagcagtacctgccgcacgtggctcgcctgtgcctgatcagc 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4716 cagttcctgcgcgtcaccaagcagtacctgccgcacgtggctcgcctgtgcctgatcagc 4657
Query: 258 actttcctggaggacggcatccgcatgtggttccagtggagcgagcagcgcgactacatc 317
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4656 actttcctggaggatggcatccgcatgtggttccagtggagcgagcagcgcgactacatc 4597
Query: 318 gacaccacctg 328
|||||||||||
Sbjct: 4596 gacaccacctg 4586
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 758 gctggctgctttgactcttgtggtctggctgttcgcgatcaacgtgtacttcaacgcctt 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1687 gctggctgctttgactcttgtggtctggctgttcgcgatcaacgtgtacttcaacgcctt 1628
Query: 818 ctggaccattcctgtctacaagcccatgcacgacttcctgaagtacgacttc 869
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1627 ctggaccattcctgtctacaagcccatgcacgacttcctgaagtacgacttc 1576
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 933 tccatggacgagaagaagaaggagtggtaacagaccccctccctgcctggctgggacccg 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1475 tccatggacgagaagaagaaggagtggtaacagaccccctccctgcctggctgggacccg 1416
Query: 993 tggccgtcggactggtccagggtggat 1019
|||||||||||||||||||||||||||
Sbjct: 1415 tggccgtcggactggtccagggtggat 1389
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 388 ctggctgcatcctggtgctgagcaggaacttcgtgcagtacgcctgctttggcctcttcg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4198 ctggctgcatcctggtgctgagcaggaacttcgtgcagtacgcctgctttggcctcttcg 4139
Query: 448 ggatcatagcgctgcag 464
|||||||||||||||||
Sbjct: 4138 ggatcatagcgctgcag 4122
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 461 gcagacgattgcctacagcattttgtgggacttgaagtttctgatgagg 509
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3433 gcagacgattgcctacagcattttgtgggacttgaagtttctgatgagg 3385
>Sscrofa_Chr01
|| Length = 315321322
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 134 cgagcctcccgccgccgccatgggccagaa--cgacctgatgggcacggccgaggacttc 191
|||||||||||| ||| ||| ||||||||| |||||||||||| |||| ||||||||
Sbjct: 184047634 cgagcctcccgcagccaccaagggccagaaaacgacctgatgggtttggccaaggacttc 184047575
Query: 192 gccgaccag 200
|||||||||
Sbjct: 184047574 gccgaccag 184047566
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,555,551
Number of extensions: 137
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 7
Length of query: 1021
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1000
Effective length of database: 2,808,413,156
Effective search space: 2808413156000
Effective search space used: 2808413156000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)