Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007864
(938 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029541.1| proteasome subunit beta type-6 precursor [Bo... 405 e-113
Alignment gi|NP_001029560.1| proteasome subunit beta type-9 precursor [Bo... 220 2e-57
Alignment gi|NP_001033616.1| proteasome subunit beta type-7 precursor [Bo... 84 2e-16
Alignment gi|NP_001032701.1| proteasome subunit beta type-5 precursor [Bo... 79 4e-15
Alignment gi|NP_001029212.1| proteasome subunit beta type-10 precursor [B... 79 4e-15
Alignment gi|NP_001092856.1| proteasome subunit beta type-11 [Bos taurus]. 76 4e-14
Alignment gi|NP_001035570.1| proteasome subunit beta type-8 precursor [Bo... 68 1e-11
>ref|NP_001029541.1| proteasome subunit beta type-6 precursor [Bos taurus].
Length = 239
Score = 405 bits (1042), Expect = e-113
Identities = 206/238 (86%), Positives = 207/238 (86%)
Frame = +2
Query: 122 MAATLVAARGAGLAPAWGHEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI 301
MAATLVAARG APAWG EAI PDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
Sbjct: 1 MAATLVAARGTRPAPAWGPEAIAPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI 60
Query: 302 ANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEM 481
ANRVTDKLTPIHDRIFCCRSGS YQLGFHSIELNEPPLVHTAASLFKEM
Sbjct: 61 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM 120
Query: 482 CYRYREDLMAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREG 661
CYRYREDLMAGII+AGWDPQEGGQVYSVPMGGMMVRQ FA VDATYREG
Sbjct: 121 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREG 180
Query: 662 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFTIATLPP 835
MTKEECLQFTANALALAMERDGSSGGVIRLAAIAE GVERQVLLGDQIPKFTIATLPP
Sbjct: 181 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAEPGVERQVLLGDQIPKFTIATLPP 238
>ref|NP_001029560.1| proteasome subunit beta type-9 precursor [Bos taurus].
Length = 219
Score = 220 bits (560), Expect = 2e-57
Identities = 109/202 (53%), Positives = 140/202 (69%)
Frame = +2
Query: 209 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXX 388
EV TGTTIMAV+FDGGVV+G+DSR + G + NRV DKL+P+H I+C SGS
Sbjct: 16 EVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQHIYCALSGSAADAQAI 75
Query: 389 XXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVP 568
YQL H +EL EPPLV AA++ + + Y+YREDL A ++VAGWD +EGGQVY
Sbjct: 76 ADMAAYQLELHGMELEEPPLVLAAANVVRNITYKYREDLSAHLMVAGWDQREGGQVYGT- 134
Query: 569 MGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 748
M GM++RQ FA VDA Y+ GM+ EEC +FT NA+ALAM+RDGSSGGVI
Sbjct: 135 MSGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMKRDGSSGGVIY 194
Query: 749 LAAIAESGVERQVLLGDQIPKF 814
LA I +GV+ +V+LGD++P+F
Sbjct: 195 LATITGAGVDHRVILGDELPRF 216
>ref|NP_001033616.1| proteasome subunit beta type-7 precursor [Bos taurus].
Length = 277
Score = 84.0 bits (206), Expect = 2e-16
Identities = 53/187 (28%), Positives = 87/187 (46%)
Frame = +2
Query: 218 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXX 397
TGTTI V + G+VLGAD+R T G +A++ K+ I I+CC +G+
Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQL 101
Query: 398 XXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVPMGG 577
L HS+ P V TA + K+M +RY+ + A +++ G D G +YS+ G
Sbjct: 102 ISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHG 160
Query: 578 MMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 757
+ + + +R M +EE + + A+A + D SG I L
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 758 IAESGVE 778
I++S ++
Sbjct: 221 ISKSKLD 227
>ref|NP_001032701.1| proteasome subunit beta type-5 precursor [Bos taurus].
Length = 263
Score = 79.3 bits (194), Expect = 4e-15
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Frame = +2
Query: 161 APAWGHEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHD 340
AP+WG P+ E+ GTT +A +F GV++ ADSR T G+YIA++ K+ I+
Sbjct: 43 APSWG----VPEEPRIEILHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINP 98
Query: 341 RIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGI 517
+ +G Q + + E V A+ L M Y+Y+ L G
Sbjct: 99 YLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGT 158
Query: 518 IVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTAN 697
++ GWD + G +Y V G + A +D Y + EE
Sbjct: 159 MICGWD-KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEEAYDLARR 217
Query: 698 ALALAMERDGSSGGVIRLAAIAESG 772
A+ A RD SGG + L + E G
Sbjct: 218 AIYQATYRDAYSGGSVSLYHVREDG 242
>ref|NP_001029212.1| proteasome subunit beta type-10 precursor [Bos taurus].
Length = 273
Score = 79.3 bits (194), Expect = 4e-15
Identities = 50/187 (26%), Positives = 83/187 (44%)
Frame = +2
Query: 218 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXX 397
TGTTI + F GV+LGAD+R T S +A+++ +K+ I +I+CC +G
Sbjct: 38 TGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRM 97
Query: 398 XXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVPMGG 577
+ H++ V T + ++ +RY+ + A +IV G D G Q+YSV G
Sbjct: 98 AASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVD-FTGPQLYSVHPHG 156
Query: 578 MMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 757
R F ++ ++ MT E + A+ + D SGG +
Sbjct: 157 SYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGNVDACV 216
Query: 758 IAESGVE 778
I +G +
Sbjct: 217 ITAAGAK 223
>ref|NP_001092856.1| proteasome subunit beta type-11 [Bos taurus].
Length = 289
Score = 76.3 bits (186), Expect = 4e-14
Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 9/214 (4%)
Frame = +2
Query: 164 PAWGHEAITPDWENR--------EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTD 319
P G A+ W+ + ++ GTT +A +F GV+ AD+R++ G+Y+ +
Sbjct: 22 PQAGSWAVPRGWDPQAFLQTHGPRLAHGTTTLAFRFRHGVIAAADTRSSCGNYVECPASR 81
Query: 320 KLTPIHDRIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE 499
K+ P+H + SG+ +L ++ + P V AA L M RYR
Sbjct: 82 KVIPVHQHLLGTTSGTSADCVTWYRVLQRELRLRALREGQLPSVAGAAKLLSVMMSRYRG 141
Query: 500 -DLMAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEE 676
DL + GWD + G ++ V G ++ +D YR M+ +E
Sbjct: 142 LDLCVATALCGWD-RSGPALFYVYSDGTCLQGNIFSVGSGSPYAYGVLDRGYRYDMSTQE 200
Query: 677 CLQFTANALALAMERDGSSGGVIRLAAIAESGVE 778
A+A A RD SGG + L + ESG E
Sbjct: 201 AYALARCAVAHATRRDAYSGGSVDLFHVRESGWE 234
>ref|NP_001035570.1| proteasome subunit beta type-8 precursor [Bos taurus].
Length = 276
Score = 67.8 bits (164), Expect = 1e-11
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 1/189 (0%)
Frame = +2
Query: 209 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXX 388
E++ GTT +A +F GV++ DSR + G+YI +K+ I+ + SG
Sbjct: 68 EMAHGTTTLAFKFQHGVIVAVDSRASAGNYIDTLKVNKVIEINPYLLGTMSGCAADCQYW 127
Query: 389 XXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIVAGWDPQEGGQVYSV 565
+ + + E V A+ L M +YR L G ++ GWD ++G +Y V
Sbjct: 128 ERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWD-KKGPGLYYV 186
Query: 566 PMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVI 745
G + +D+ YR ++ EE A+ A RD SGGV+
Sbjct: 187 NDSGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDSYSGGVV 246
Query: 746 RLAAIAESG 772
+ + E G
Sbjct: 247 NMYHMKEDG 255
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,492,677
Number of extensions: 1039952
Number of successful extensions: 3168
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3162
Number of HSP's successfully gapped: 7
Length of query: 312
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,306,398
Effective search space: 3004343580
Effective search space used: 3004343580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007864
(938 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849241.1| PREDICTED: similar to Proteasome subunit beta t... 409 e-114
Alignment gi|NP_001041551.1| proteasome subunit beta type-9 [Canis lupus ... 215 5e-56
Alignment gi|NP_001041550.1| proteasome subunit beta type-8 precursor [Ca... 80 4e-15
Alignment gi|XP_537370.2| PREDICTED: similar to proteasome beta 5 subunit... 77 3e-14
Alignment gi|XP_546869.2| PREDICTED: similar to proteasome beta 10 subuni... 73 4e-13
Alignment gi|XP_547726.1| PREDICTED: similar to proteasome beta 5 subunit... 71 1e-12
>ref|XP_849241.1| PREDICTED: similar to Proteasome subunit beta type 6 precursor
(Proteasome delta chain) (Macropain delta chain)
(Multicatalytic endopeptidase complex delta chain)
(Proteasome subunit Y) [Canis familiaris].
Length = 239
Score = 409 bits (1050), Expect = e-114
Identities = 206/239 (86%), Positives = 211/239 (88%)
Frame = +2
Query: 122 MAATLVAARGAGLAPAWGHEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI 301
MAATL+ ARGA APAWG EAITPDWE+REVSTGTTIMAVQF+GGVVLGADSRTTTGSYI
Sbjct: 1 MAATLLTARGAESAPAWGAEAITPDWESREVSTGTTIMAVQFEGGVVLGADSRTTTGSYI 60
Query: 302 ANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEM 481
ANRVTDKLTPIHDRIFCCRSGS YQLGFHSIELNEPPLVHTAASLFKEM
Sbjct: 61 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM 120
Query: 482 CYRYREDLMAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREG 661
CYRYREDLMAGII+AGWDPQEGGQVYSVPMGGMMVRQ+FA VDATYREG
Sbjct: 121 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG 180
Query: 662 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFTIATLPPP 838
MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFTIATLPPP
Sbjct: 181 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFTIATLPPP 239
>ref|NP_001041551.1| proteasome subunit beta type-9 [Canis lupus familiaris].
Length = 209
Score = 215 bits (547), Expect = 5e-56
Identities = 106/202 (52%), Positives = 136/202 (67%)
Frame = +2
Query: 209 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXX 388
EV TGTTIMAV+FDGGVV+G+DSR + G + NR +KL+P+H I+C SGS
Sbjct: 6 EVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRAFNKLSPLHQHIYCALSGSAADAQAM 65
Query: 389 XXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVP 568
YQL H +EL EPPLV AA++ + + Y+YREDL A +++AGWD ++GGQVY
Sbjct: 66 ADMAAYQLELHGLELEEPPLVLAAANVVRNISYKYREDLSAHLMIAGWDRRDGGQVYGT- 124
Query: 569 MGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 748
MGGM+ RQ FA VDA Y+ GM+ EEC FT NA+ALAM RDGSSGGVI
Sbjct: 125 MGGMLTRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRSFTTNAIALAMNRDGSSGGVIH 184
Query: 749 LAAIAESGVERQVLLGDQIPKF 814
L I +GV+ QV+LG+++PKF
Sbjct: 185 LVTITAAGVDYQVILGNELPKF 206
>ref|NP_001041550.1| proteasome subunit beta type-8 precursor [Canis lupus familiaris].
Length = 276
Score = 79.7 bits (195), Expect = 4e-15
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 1/190 (0%)
Frame = +2
Query: 206 REVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXX 385
+E+ GTT +A +F GV++ DSR T G+YI++ +K+ I+ + SG
Sbjct: 67 KEMVHGTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQY 126
Query: 386 XXXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIVAGWDPQEGGQVYS 562
+ + + E V A+ L M Y+YR DL G ++ GWD ++G +Y
Sbjct: 127 WERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWD-KKGPGLYY 185
Query: 563 VPMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGV 742
V G + +D+ Y+ ++ EE + A+ A RD SGG+
Sbjct: 186 VDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDSYSGGI 245
Query: 743 IRLAAIAESG 772
I + + E G
Sbjct: 246 INMYHMKEDG 255
>ref|XP_537370.2| PREDICTED: similar to proteasome beta 5 subunit [Canis familiaris].
Length = 263
Score = 76.6 bits (187), Expect = 3e-14
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 6/210 (2%)
Frame = +2
Query: 161 APAWGHEAITPDW-----ENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKL 325
+P+ G + P+W E+ GTT +A +F GV++ ADSR T G+YIA++ K+
Sbjct: 34 SPSDGLSLVAPNWGVAEEPGIEMLHGTTTLAFKFQHGVIVAADSRATAGAYIASQTVKKV 93
Query: 326 TPIHDRIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-ED 502
I+ + +G Q + + E V A+ L M Y+Y+
Sbjct: 94 IEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMG 153
Query: 503 LMAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECL 682
L G ++ GWD + G +Y V G + A +D Y + E+
Sbjct: 154 LSMGTMICGWD-KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAY 212
Query: 683 QFTANALALAMERDGSSGGVIRLAAIAESG 772
A+ A RD SGG + L + E G
Sbjct: 213 DLARRAIYQATYRDAYSGGAVNLYHVREDG 242
>ref|XP_546869.2| PREDICTED: similar to proteasome beta 10 subunit proprotein [Canis
familiaris].
Length = 305
Score = 72.8 bits (177), Expect = 4e-13
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 5/196 (2%)
Frame = +2
Query: 206 REVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDR-----IFCCRSGSX 370
R TGTTI + F GV+LGAD+R T S + ++ +K+ I + CC +G
Sbjct: 61 RAHKTGTTIAGLVFRDGVILGADTRATNDSVVMDKNCEKIHFIAPNEPPLVLSCCGAGVA 120
Query: 371 XXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGG 550
+ HS+ P V T L ++ +RYR + A ++V G D G
Sbjct: 121 ADAEMTTRMAASNMELHSLSTGREPRVTTVTRLLRQTLFRYRGHVGASLLVGGVD-FSGP 179
Query: 551 QVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGS 730
Q+YSV G R F ++ ++ MT E + A+ + D
Sbjct: 180 QLYSVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQELLVEAITAGILGDLG 239
Query: 731 SGGVIRLAAIAESGVE 778
SGG + I +G +
Sbjct: 240 SGGSVDACVITGTGAK 255
>ref|XP_547726.1| PREDICTED: similar to proteasome beta 5 subunit [Canis familiaris].
Length = 282
Score = 71.2 bits (173), Expect = 1e-12
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 1/187 (0%)
Frame = +2
Query: 221 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXXX 400
GTT +A +F GV+ AD+R++ G+Y+A + K+ P+H + SG+
Sbjct: 49 GTTTLAFRFRHGVIAAADTRSSCGNYVACPASRKIIPVHQHLLGTTSGTSADCAAWYRVL 108
Query: 401 XYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIVAGWDPQEGGQVYSVPMGG 577
+L ++ P V AA L M YR DL + GWD + G ++ V G
Sbjct: 109 RRELRLRALREGRLPSVAGAARLLSAMMSCYRGLDLCVATALCGWD-RSGPALFYVCSDG 167
Query: 578 MMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 757
+ +D YR ++ +E A+A A RD SGG + L
Sbjct: 168 TRLPGNVFSVGSGSPYAYGVLDRGYRYDLSPQEAYALARRAVAHATHRDAYSGGSVDLFH 227
Query: 758 IAESGVE 778
+ E G E
Sbjct: 228 VREDGWE 234
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,043,305
Number of extensions: 1060565
Number of successful extensions: 3224
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3219
Number of HSP's successfully gapped: 6
Length of query: 312
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 209
Effective length of database: 15,440,896
Effective search space: 3227147264
Effective search space used: 3227147264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007864
(938 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138398.1| proteasome subunit beta type-6 [Sus scrofa]. 426 e-119
Alignment gi|XP_003128374.1| PREDICTED: proteasome subunit beta type-9-li... 221 3e-58
Alignment gi|NP_001033050.1| proteasome subunit beta type-9 [Sus scrofa]. 221 3e-58
Alignment gi|NP_001090945.1| proteasome subunit beta type-7 precursor [Su... 85 5e-17
Alignment gi|NP_001038030.1| proteasome subunit beta type-10 [Sus scrofa]. 80 1e-15
Alignment gi|XP_001925798.1| PREDICTED: proteasome subunit beta type-11-l... 80 2e-15
Alignment gi|XP_001924480.2| PREDICTED: proteasome subunit beta type-5 [S... 77 1e-14
Alignment gi|XP_001924154.2| PREDICTED: proteasome subunit beta type-8 [S... 74 2e-13
Alignment gi|NP_999100.1| proteasome subunit beta type-8 [Sus scrofa]. 73 3e-13
>ref|NP_001138398.1| proteasome subunit beta type-6 [Sus scrofa].
Length = 241
Score = 426 bits (1094), Expect = e-119
Identities = 216/241 (89%), Positives = 216/241 (89%)
Frame = +2
Query: 116 MKMAATLVAARGAGLAPAWGHEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGS 295
MKMAATLVAARGAGLAPAWG EAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGS
Sbjct: 1 MKMAATLVAARGAGLAPAWGPEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGS 60
Query: 296 YIANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFK 475
YIANRVTDKLTPIHDRIFCCRSGS YQLGFHSIELNEPPLVHTAASLFK
Sbjct: 61 YIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFK 120
Query: 476 EMCYRYREDLMAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYR 655
EMCYRYREDLMAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFA VDATYR
Sbjct: 121 EMCYRYREDLMAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFAIGGSGSSYIYGYVDATYR 180
Query: 656 EGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFTIATLPP 835
EGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFTIATLPP
Sbjct: 181 EGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFTIATLPP 240
Query: 836 P 838
P
Sbjct: 241 P 241
>ref|XP_003128374.1| PREDICTED: proteasome subunit beta type-9-like [Sus scrofa].
Length = 219
Score = 221 bits (564), Expect = 3e-58
Identities = 110/202 (54%), Positives = 140/202 (69%)
Frame = +2
Query: 209 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXX 388
EV TGTTIMAV+FDGGVV+G+DSR + G + NRV DKL+P+H RI+C SGS
Sbjct: 16 EVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHHRIYCALSGSAADAQAI 75
Query: 389 XXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVP 568
YQL H +EL EPPLV AA++ + + Y+YREDL A ++VAGWD +EGGQVY
Sbjct: 76 ADMAAYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT- 134
Query: 569 MGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 748
MGGM++RQ FA VDA Y+ GM+ EEC +FT NA+ALAM RDGSSGGVI
Sbjct: 135 MGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVIY 194
Query: 749 LAAIAESGVERQVLLGDQIPKF 814
L I +GV+ +V+LG+++PKF
Sbjct: 195 LVTITAAGVDHRVILGNELPKF 216
>ref|NP_001033050.1| proteasome subunit beta type-9 [Sus scrofa].
Length = 219
Score = 221 bits (564), Expect = 3e-58
Identities = 110/202 (54%), Positives = 140/202 (69%)
Frame = +2
Query: 209 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXX 388
EV TGTTIMAV+FDGGVV+G+DSR + G + NRV DKL+P+H RI+C SGS
Sbjct: 16 EVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHHRIYCALSGSAADAQAI 75
Query: 389 XXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVP 568
YQL H +EL EPPLV AA++ + + Y+YREDL A ++VAGWD +EGGQVY
Sbjct: 76 ADMAAYQLELHGMELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT- 134
Query: 569 MGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 748
MGGM++RQ FA VDA Y+ GM+ EEC +FT NA+ALAM RDGSSGGVI
Sbjct: 135 MGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMSPEECRRFTTNAIALAMNRDGSSGGVIY 194
Query: 749 LAAIAESGVERQVLLGDQIPKF 814
L I +GV+ +V+LG+++PKF
Sbjct: 195 LVTITAAGVDHRVILGNELPKF 216
>ref|NP_001090945.1| proteasome subunit beta type-7 precursor [Sus scrofa].
Length = 277
Score = 85.1 bits (209), Expect = 5e-17
Identities = 54/187 (28%), Positives = 87/187 (46%)
Frame = +2
Query: 218 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXX 397
TGTTI V + G+VLGAD+R T G +A++ K+ I I+CC +G+
Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQL 101
Query: 398 XXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVPMGG 577
L HS+ P V TA + K+M +RY+ + A +++ G D G +YS+ G
Sbjct: 102 ISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHG 160
Query: 578 MMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 757
+ + + +R M +EE Q + A+A + D SG I L
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 758 IAESGVE 778
I++S ++
Sbjct: 221 ISKSKLD 227
>ref|NP_001038030.1| proteasome subunit beta type-10 [Sus scrofa].
Length = 273
Score = 80.5 bits (197), Expect = 1e-15
Identities = 51/189 (26%), Positives = 83/189 (43%)
Frame = +2
Query: 212 VSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXXX 391
+ TGTTI + F GV+LGAD+R T S +A++ +K+ I +I+CC +G
Sbjct: 36 LKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTT 95
Query: 392 XXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVPM 571
+ H++ P V T + ++ +RY+ + A +IV G D G Q+YSV
Sbjct: 96 RMAASNIELHALSTGREPRVATVTRMLRQKLFRYQGHVGASLIVGGID-FTGPQLYSVHP 154
Query: 572 GGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 751
G R F ++ ++ MT E A+ + D SGG +
Sbjct: 155 HGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAITAGILSDLGSGGNVDA 214
Query: 752 AAIAESGVE 778
I +G +
Sbjct: 215 CVIMGTGAK 223
>ref|XP_001925798.1| PREDICTED: proteasome subunit beta type-11-like [Sus scrofa].
Length = 291
Score = 79.7 bits (195), Expect = 2e-15
Identities = 60/230 (26%), Positives = 94/230 (40%), Gaps = 1/230 (0%)
Frame = +2
Query: 92 VALWQ*RRMKMAATLVAARGAGLAPAWGHEAITPDWENREVSTGTTIMAVQFDGGVVLGA 271
V WQ + A+ + GA P ++ GTT +A +F GV+ A
Sbjct: 6 VCQWQALDPQGASPYLPQAGAWAVPRGWDPQTFLQTHGPRLAHGTTTLAFRFRDGVIAAA 65
Query: 272 DSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLV 451
D+R++ G+Y+ + K+ P+H + SG+ +L + + P V
Sbjct: 66 DTRSSCGNYVECPASRKVIPVHQHLLGTTSGTSADCTTWYRVLRRELRLRELREGQLPSV 125
Query: 452 HTAASLFKEMCYRYRE-DLMAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXX 628
AA L M RYR DL + GWD + G ++ V G +++
Sbjct: 126 AGAAKLLSGMMSRYRGLDLCVATALCGWD-RSGPALFYVYSDGTLLQGDIFSVGSGSPYA 184
Query: 629 XXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVE 778
+D YR M+ +E A+A A RD SGG + L + ESG E
Sbjct: 185 YGVLDRGYRYDMSTQEAYALACRAVAHATHRDAYSGGSVDLFHVRESGWE 234
>ref|XP_001924480.2| PREDICTED: proteasome subunit beta type-5 [Sus scrofa].
Length = 275
Score = 77.4 bits (189), Expect = 1e-14
Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 1/206 (0%)
Frame = +2
Query: 158 LAPAWGHEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIH 337
+AP+WG P+ E+ GTT +A +F GV++ ADSR T G+YIA++ K+ I+
Sbjct: 54 VAPSWG----VPEEPRIEMLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEIN 109
Query: 338 DRIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAG 514
+ +G Q + + E V A+ L M Y+Y+ L G
Sbjct: 110 PYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMG 169
Query: 515 IIVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTA 694
++ GWD + G +Y V G + A +D Y + E+
Sbjct: 170 TMICGWD-KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLAR 228
Query: 695 NALALAMERDGSSGGVIRLAAIAESG 772
A+ A RD SGG + L + E G
Sbjct: 229 RAIYQATYRDAYSGGSVNLYHVREDG 254
>ref|XP_001924154.2| PREDICTED: proteasome subunit beta type-8 [Sus scrofa].
Length = 276
Score = 73.6 bits (179), Expect = 2e-13
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 1/189 (0%)
Frame = +2
Query: 209 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXX 388
E++ GTT +A +F GV++ DSR + GSYIA +K+ I+ + SGS
Sbjct: 68 EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGSAADCQYW 127
Query: 389 XXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIVAGWDPQEGGQVYSV 565
+ + + + V A+ L M Y+YR L G ++ GWD ++G +Y V
Sbjct: 128 ERLLAKECRLYYLRNGDRISVSAASKLLSNMMYQYRGMGLSMGSMICGWD-KKGPGLYYV 186
Query: 566 PMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVI 745
G + +D+ +R ++ EE A+ A RD SGGV+
Sbjct: 187 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 246
Query: 746 RLAAIAESG 772
+ + E G
Sbjct: 247 NMYHMKEDG 255
>ref|NP_999100.1| proteasome subunit beta type-8 [Sus scrofa].
Length = 260
Score = 72.8 bits (177), Expect = 3e-13
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 1/189 (0%)
Frame = +2
Query: 209 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXX 388
E++ GTT +A +F GV++ DSR + GSYIA +K+ I+ + SG
Sbjct: 52 EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 111
Query: 389 XXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIVAGWDPQEGGQVYSV 565
+ + + E V A+ L M Y+YR L G ++ GWD ++G +Y V
Sbjct: 112 ERLLAKECRLYYLRNGERISVSAASKLLSNMMYQYRGMGLSMGSMICGWD-KKGPGLYYV 170
Query: 566 PMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVI 745
G + +D+ +R ++ EE A+ A RD SGGV+
Sbjct: 171 DENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVV 230
Query: 746 RLAAIAESG 772
+ + E G
Sbjct: 231 NMYHMKEDG 239
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,748,479
Number of extensions: 696254
Number of successful extensions: 2035
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2031
Number of HSP's successfully gapped: 9
Length of query: 312
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 213
Effective length of database: 8,879,129
Effective search space: 1891254477
Effective search space used: 1891254477
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007864
(938 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032972.3| proteasome subunit beta type-6 precursor [Mus m... 394 e-110
Alignment gi|NP_038613.1| proteasome subunit beta type-9 [Mus musculus]. 223 2e-58
Alignment gi|NP_035317.1| proteasome subunit beta type-7 precursor [Mus m... 84 2e-16
Alignment gi|NP_038668.2| proteasome subunit beta type-10 precursor [Mus ... 82 8e-16
Alignment gi|NP_035316.1| proteasome subunit beta type-5 [Mus musculus]. 79 7e-15
Alignment gi|NP_034854.2| proteasome subunit beta type-8 precursor [Mus m... 77 1e-14
Alignment gi|NP_780413.1| proteasome subunit beta type-11 precursor [Mus ... 74 1e-13
>ref|NP_032972.3| proteasome subunit beta type-6 precursor [Mus musculus].
Length = 238
Score = 394 bits (1011), Expect = e-110
Identities = 201/239 (84%), Positives = 207/239 (86%)
Frame = +2
Query: 122 MAATLVAARGAGLAPAWGHEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI 301
MAA L A R AG APA+G EA+TPDWENREVSTGTTIMAVQF+GGVVLGADSRTTTGSYI
Sbjct: 1 MAAAL-AVRRAGSAPAFGPEALTPDWENREVSTGTTIMAVQFNGGVVLGADSRTTTGSYI 59
Query: 302 ANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEM 481
ANRVTDKLTPIHD IFCCRSGS YQLGFHSIELNEPPLVHTAASLFKEM
Sbjct: 60 ANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM 119
Query: 482 CYRYREDLMAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREG 661
CYRYREDLMAGII+AGWDPQEGGQVYSVPMGGMMVRQ+FA VDATYREG
Sbjct: 120 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG 179
Query: 662 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFTIATLPPP 838
MTK+ECLQFTANALALAMERDGSSGGVIRLAAI ESGVERQVLLGDQIPKFTIATLPPP
Sbjct: 180 MTKDECLQFTANALALAMERDGSSGGVIRLAAIQESGVERQVLLGDQIPKFTIATLPPP 238
>ref|NP_038613.1| proteasome subunit beta type-9 [Mus musculus].
Length = 219
Score = 223 bits (567), Expect = 2e-58
Identities = 111/206 (53%), Positives = 139/206 (67%)
Frame = +2
Query: 197 WENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXX 376
+ EV TGTTIMAV+FDGGVV+G+DSR + G+ + NRV DKL+P+H IFC SGS
Sbjct: 12 FRTEEVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQHIFCALSGSAAD 71
Query: 377 XXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQV 556
YQL H +EL EPPLV AA++ K + Y+YREDL+A +IVAGWD EGGQV
Sbjct: 72 AQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQCEGGQV 131
Query: 557 YSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSG 736
Y MGGM++RQ F VDA Y+ GMT EEC +FT +A+ LAM RDGSSG
Sbjct: 132 YGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSG 190
Query: 737 GVIRLAAIAESGVERQVLLGDQIPKF 814
GVI L I +GV+ +V+LGD++PKF
Sbjct: 191 GVIYLVTITAAGVDHRVILGDELPKF 216
>ref|NP_035317.1| proteasome subunit beta type-7 precursor [Mus musculus].
Length = 277
Score = 83.6 bits (205), Expect = 2e-16
Identities = 53/187 (28%), Positives = 87/187 (46%)
Frame = +2
Query: 218 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXX 397
TGTTI V + G+VLGAD+R T G +A++ K+ I I+CC +G+
Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQL 101
Query: 398 XXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVPMGG 577
L HS+ P V TA + K+M +RY+ + A +++ G D G +YS+ G
Sbjct: 102 ISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHG 160
Query: 578 MMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 757
+ + + +R M +EE + + A+A + D SG I L
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 758 IAESGVE 778
I++S ++
Sbjct: 221 ISKSKLD 227
>ref|NP_038668.2| proteasome subunit beta type-10 precursor [Mus musculus].
Length = 273
Score = 81.6 bits (200), Expect = 8e-16
Identities = 50/189 (26%), Positives = 83/189 (43%)
Frame = +2
Query: 218 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXX 397
TGTTI + F GV+LGAD+R T S +A++ +K+ I +I+CC +G
Sbjct: 38 TGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRM 97
Query: 398 XXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVPMGG 577
++ H++ P V T + ++ +RY+ + A ++V G D G Q+Y V G
Sbjct: 98 AASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYEVHPHG 156
Query: 578 MMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 757
R F ++ ++ MT E + A+ + D SGG +
Sbjct: 157 SYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACV 216
Query: 758 IAESGVERQ 784
I G + Q
Sbjct: 217 ITAGGAKLQ 225
>ref|NP_035316.1| proteasome subunit beta type-5 [Mus musculus].
Length = 264
Score = 78.6 bits (192), Expect = 7e-15
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 1/205 (0%)
Frame = +2
Query: 161 APAWGHEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHD 340
AP+WG P+ E+ GTT +A +F GV++ ADSR T G+YIA++ K+ I+
Sbjct: 43 APSWG----VPEEPRIEMLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINP 98
Query: 341 RIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGI 517
+ +G Q + + E V A+ L M Y+Y+ L G
Sbjct: 99 YLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGT 158
Query: 518 IVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTAN 697
++ GWD + G Y G + AF+ +D Y + EE
Sbjct: 159 MICGWDKRGPGLYYVDSEGNRISGTAFS-VGSGSVYAYGVMDRGYSYDLKVEEAYDLARR 217
Query: 698 ALALAMERDGSSGGVIRLAAIAESG 772
A+ A RD SGG + L + E G
Sbjct: 218 AIYQATYRDAYSGGAVNLYHVREDG 242
>ref|NP_034854.2| proteasome subunit beta type-8 precursor [Mus musculus].
Length = 276
Score = 77.4 bits (189), Expect = 1e-14
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 1/189 (0%)
Frame = +2
Query: 209 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXX 388
E++ GTT +A +F GV++ DSR T GSYI++ +K+ I+ + SG
Sbjct: 68 EMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYW 127
Query: 389 XXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIVAGWDPQEGGQVYSV 565
+ + + E V A+ L M +YR L G ++ GWD + G Y
Sbjct: 128 ERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVD 187
Query: 566 PMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVI 745
G + Q F+ +D+ YR+ ++ EE A+A A RD SGGV+
Sbjct: 188 DNGTRLSGQMFS-TGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVV 246
Query: 746 RLAAIAESG 772
+ + E G
Sbjct: 247 NMYHMKEDG 255
>ref|NP_780413.1| proteasome subunit beta type-11 precursor [Mus musculus].
Length = 302
Score = 74.3 bits (181), Expect = 1e-13
Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 1/187 (0%)
Frame = +2
Query: 221 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXXX 400
GTT +A +F GV+ AD+R++ GSY+A + K+ P+H R+ SG+
Sbjct: 49 GTTTLAFRFRHGVIAAADTRSSCGSYVACPASRKVIPVHQRLLGTTSGTSADCATWYRVL 108
Query: 401 XYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIVAGWDPQEGGQVYSVPMGG 577
+L + + P V A L M YR DL + GWD G ++ V G
Sbjct: 109 RRELRLRELREGQLPSVAGTAKLLAAMMSCYRGLDLCVATALCGWD-HSGPALFYVYSDG 167
Query: 578 MMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 757
++ +D Y MT +E A+A A RD SGG + L
Sbjct: 168 TCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQEAYTLARCAVAHATHRDAYSGGSVDLFH 227
Query: 758 IAESGVE 778
+ ESG E
Sbjct: 228 VRESGWE 234
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,417,593
Number of extensions: 860300
Number of successful extensions: 2401
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2392
Number of HSP's successfully gapped: 7
Length of query: 312
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 211
Effective length of database: 12,583,923
Effective search space: 2655207753
Effective search space used: 2655207753
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007864
(938 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002789.1| proteasome subunit beta type-6 precursor [Homo ... 408 e-114
Alignment gi|NP_002791.1| proteasome subunit beta type-9 proprotein [Homo... 220 2e-57
Alignment gi|NP_002790.1| proteasome subunit beta type-7 proprotein [Homo... 82 5e-16
Alignment gi|NP_002792.1| proteasome subunit beta type-10 precursor [Homo... 80 3e-15
Alignment gi|NP_001093250.1| proteasome subunit beta type-11 precursor [H... 79 5e-15
Alignment gi|NP_002788.1| proteasome subunit beta type-5 isoform 1 [Homo ... 78 1e-14
Alignment gi|NP_004150.1| proteasome subunit beta type-8 isoform E1 propr... 74 1e-13
Alignment gi|NP_683720.2| proteasome subunit beta type-8 isoform E2 propr... 73 4e-13
Alignment gi|NP_001138404.1| proteasome subunit beta type-5 isoform 3 [Ho... 62 1e-09
>ref|NP_002789.1| proteasome subunit beta type-6 precursor [Homo sapiens].
Length = 239
Score = 408 bits (1048), Expect = e-114
Identities = 205/238 (86%), Positives = 210/238 (88%)
Frame = +2
Query: 122 MAATLVAARGAGLAPAWGHEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI 301
MAATL+AARGAG APAWG EA TPDWE+REVSTGTTIMAVQFDGGVVLGADSRTTTGSYI
Sbjct: 1 MAATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYI 60
Query: 302 ANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEM 481
ANRVTDKLTPIHDRIFCCRSGS YQLGFHSIELNEPPLVHTAASLFKEM
Sbjct: 61 ANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEM 120
Query: 482 CYRYREDLMAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREG 661
CYRYREDLMAGII+AGWDPQEGGQVYSVPMGGMMVRQ+FA VDATYREG
Sbjct: 121 CYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREG 180
Query: 662 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFTIATLPP 835
MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKF +ATLPP
Sbjct: 181 MTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPP 238
>ref|NP_002791.1| proteasome subunit beta type-9 proprotein [Homo sapiens].
Length = 219
Score = 220 bits (560), Expect = 2e-57
Identities = 109/202 (53%), Positives = 140/202 (69%)
Frame = +2
Query: 209 EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXX 388
EV TGTTIMAV+FDGGVV+G+DSR + G + NRV DKL+P+H+RI+C SGS
Sbjct: 16 EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAV 75
Query: 389 XXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVP 568
YQL H IEL EPPLV AA++ + + Y+YREDL A ++VAGWD +EGGQVY
Sbjct: 76 ADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGT- 134
Query: 569 MGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIR 748
+GGM+ RQ FA VDA Y+ GM+ EEC +FT +A+ALAM RDGSSGGVI
Sbjct: 135 LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIY 194
Query: 749 LAAIAESGVERQVLLGDQIPKF 814
L I +GV+ +V+LG+++PKF
Sbjct: 195 LVTITAAGVDHRVILGNELPKF 216
>ref|NP_002790.1| proteasome subunit beta type-7 proprotein [Homo sapiens].
Length = 277
Score = 82.4 bits (202), Expect = 5e-16
Identities = 52/187 (27%), Positives = 86/187 (45%)
Frame = +2
Query: 218 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXX 397
TGTTI V + G+VLGAD+R T G +A++ K+ I I+CC +G+
Sbjct: 42 TGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQL 101
Query: 398 XXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVPMGG 577
L HS+ P V TA + K+M +RY+ + A +++ G D G +YS+ G
Sbjct: 102 ISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHG 160
Query: 578 MMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 757
+ + + +R M +EE + A+A + D SG I L
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 758 IAESGVE 778
I+++ ++
Sbjct: 221 ISKNKLD 227
>ref|NP_002792.1| proteasome subunit beta type-10 precursor [Homo sapiens].
Length = 273
Score = 80.1 bits (196), Expect = 3e-15
Identities = 50/187 (26%), Positives = 83/187 (44%)
Frame = +2
Query: 218 TGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXX 397
TGTTI + F GV+LGAD+R T S +A++ +K+ I +I+CC +G
Sbjct: 38 TGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRM 97
Query: 398 XXYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIVAGWDPQEGGQVYSVPMGG 577
++ H++ P V T + ++ +RY+ + A +IV G D G Q+Y V G
Sbjct: 98 VASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LTGPQLYGVHPHG 156
Query: 578 MMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 757
R F ++ ++ MT E A+ + D SGG +
Sbjct: 157 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACV 216
Query: 758 IAESGVE 778
I ++G +
Sbjct: 217 ITKTGAK 223
>ref|NP_001093250.1| proteasome subunit beta type-11 precursor [Homo sapiens].
Length = 300
Score = 79.3 bits (194), Expect = 5e-15
Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 1/187 (0%)
Frame = +2
Query: 221 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXXX 400
GTT +A +F GV+ AD+R++ GSY+A + K+ P+H + SG+
Sbjct: 49 GTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVL 108
Query: 401 XYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIVAGWDPQEGGQVYSVPMGG 577
+L + + P V +AA L M +YR DL + GWD + G +++ V G
Sbjct: 109 QRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWD-RSGPELFYVYSDG 167
Query: 578 MMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 757
++ +D YR M+ +E A+A A RD SGG + L
Sbjct: 168 TRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFH 227
Query: 758 IAESGVE 778
+ ESG E
Sbjct: 228 VRESGWE 234
>ref|NP_002788.1| proteasome subunit beta type-5 isoform 1 [Homo sapiens].
Length = 263
Score = 78.2 bits (191), Expect = 1e-14
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 1/205 (0%)
Frame = +2
Query: 161 APAWGHEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHD 340
AP WG P+ E+ GTT +A +F GV++ ADSR T G+YIA++ K+ I+
Sbjct: 43 APGWG----VPEEPGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINP 98
Query: 341 RIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGI 517
+ +G Q + + E V A+ L M Y+Y+ L G
Sbjct: 99 YLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGT 158
Query: 518 IVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECLQFTAN 697
++ GWD + G +Y V G + A +D Y + E+
Sbjct: 159 MICGWD-KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARR 217
Query: 698 ALALAMERDGSSGGVIRLAAIAESG 772
A+ A RD SGG + L + E G
Sbjct: 218 AIYQATYRDAYSGGAVNLYHVREDG 242
>ref|NP_004150.1| proteasome subunit beta type-8 isoform E1 proprotein [Homo
sapiens].
Length = 272
Score = 74.3 bits (181), Expect = 1e-13
Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 4/218 (1%)
Frame = +2
Query: 131 TLVAARGAGLAPAWGHEAITPDWENR---EVSTGTTIMAVQFDGGVVLGADSRTTTGSYI 301
T V++ GL P +++ D E E++ GTT +A +F GV+ DSR + GSYI
Sbjct: 35 TPVSSGCPGLEPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYI 94
Query: 302 ANRVTDKLTPIHDRIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEM 481
+ +K+ I+ + SG + + + E V A+ L M
Sbjct: 95 SALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNM 154
Query: 482 CYRYR-EDLMAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYRE 658
+YR L G ++ GWD ++G +Y V G + +D+ YR
Sbjct: 155 MCQYRGMGLSMGSMICGWD-KKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRP 213
Query: 659 GMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESG 772
++ EE A+A A RD SGGV+ + + E G
Sbjct: 214 NLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDG 251
>ref|NP_683720.2| proteasome subunit beta type-8 isoform E2 proprotein [Homo
sapiens].
Length = 276
Score = 72.8 bits (177), Expect = 4e-13
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 4/210 (1%)
Frame = +2
Query: 155 GLAPAWGHEAITPDWENR---EVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKL 325
G+ P +++ D E E++ GTT +A +F GV+ DSR + GSYI+ +K+
Sbjct: 47 GMQPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKV 106
Query: 326 TPIHDRIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-ED 502
I+ + SG + + + E V A+ L M +YR
Sbjct: 107 IEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMG 166
Query: 503 LMAGIIVAGWDPQEGGQVYSVPMGGMMVRQAFAXXXXXXXXXXXXVDATYREGMTKEECL 682
L G ++ GWD ++G +Y V G + +D+ YR ++ EE
Sbjct: 167 LSMGSMICGWD-KKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAY 225
Query: 683 QFTANALALAMERDGSSGGVIRLAAIAESG 772
A+A A RD SGGV+ + + E G
Sbjct: 226 DLGRRAIAYATHRDSYSGGVVNMYHMKEDG 255
>ref|NP_001138404.1| proteasome subunit beta type-5 isoform 3 [Homo sapiens].
Length = 203
Score = 61.6 bits (148), Expect = 1e-09
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Frame = +2
Query: 161 APAWGHEAITPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHD 340
AP WG P+ E+ GTT +A +F GV++ ADSR T G+YIA++ K+ I+
Sbjct: 43 APGWG----VPEEPGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINP 98
Query: 341 RIFCCRSGSXXXXXXXXXXXXYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGI 517
+ +G Q + + E V A+ L M Y+Y+ L G
Sbjct: 99 YLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGT 158
Query: 518 IVAGWD 535
++ GWD
Sbjct: 159 MICGWD 164
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,225,511
Number of extensions: 1034881
Number of successful extensions: 3134
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3124
Number of HSP's successfully gapped: 9
Length of query: 312
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,934,836
Effective search space: 3136315560
Effective search space used: 3136315560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007864
(938 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 442 e-121
Sscrofa_Chr09 198 4e-48
>Sscrofa_Chr12
|| Length = 63588571
Score = 442 bits (223), Expect = e-121
Identities = 223/223 (100%)
Strand = Plus / Minus
Query: 1 ccttttcccttctgccgtcaaccgaggcgtagcttcgttcccagaaggcctcagagcgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54319129 ccttttcccttctgccgtcaaccgaggcgtagcttcgttcccagaaggcctcagagcgcg 54319070
Query: 61 actaaagagcgtgacggagcgctttacgacagttgctttgtggcagtaacggaggatgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54319069 actaaagagcgtgacggagcgctttacgacagttgctttgtggcagtaacggaggatgaa 54319010
Query: 121 gatggcggccaccttagtagctgctcggggagccgggctggcaccagcctgggggcatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54319009 gatggcggccaccttagtagctgctcggggagccgggctggcaccagcctgggggcatga 54318950
Query: 181 ggccattacccccgactgggaaaaccgggaagtctccaccggg 223
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54318949 ggccattacccccgactgggaaaaccgggaagtctccaccggg 54318907
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Minus
Query: 698 gctcttgctttggccatggagcgggacggctccagcggaggggtgatccgcttagcagcc 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54317274 gctcttgctttggccatggagcgggacggctccagcggaggggtgatccgcttagcagcc 54317215
Query: 758 attgcagaatcaggggtcgagcgacaggtacttttgggagaccagattcccaaattcacc 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54317214 attgcagaatcaggggtcgagcgacaggtacttttgggagaccagattcccaaattcacc 54317155
Query: 818 attgccactttacctcctccctgaatcttgggattctaagctacaataagagacaccccc 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54317154 attgccactttacctcctccctgaatcttgggattctaagctacaataagagacaccccc 54317095
Query: 878 tactaatgcaaaattcaataaacagtttgtcagtga 913
||||||||||||||||||||||||||||||||||||
Sbjct: 54317094 tactaatgcaaaattcaataaacagtttgtcagtga 54317059
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 549 ggcaggtgtactcagtgcccatgggaggtatgatggtgagacaggcctttgccattggcg 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54317544 ggcaggtgtactcagtgcccatgggaggtatgatggtgagacaggcctttgccattggcg 54317485
Query: 609 gctctgggagctcctatatctacggctatgtggatgctacctaccgggaaggcatgacca 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54317484 gctctgggagctcctatatctacggctatgtggatgctacctaccgggaaggcatgacca 54317425
Query: 669 aggaagagtgtctgcagttcactgccaatg 698
||||||||||||||||||||||||||||||
Sbjct: 54317424 aggaagagtgtctgcagttcactgccaatg 54317395
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 422 agcattgagctgaatgaacctccgctggtgcacacggcagccagcctctttaaggagatg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54317873 agcattgagctgaatgaacctccgctggtgcacacggcagccagcctctttaaggagatg 54317814
Query: 482 tgttaccgataccgggaagacttgatggcaggaatcatcgttgcgggctgggacccccaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54317813 tgttaccgataccgggaagacttgatggcaggaatcatcgttgcgggctgggacccccaa 54317754
Query: 542 gaaggggggcaggt 555
||||||||||||||
Sbjct: 54317753 gaaggggggcaggt 54317740
Score = 264 bits (133), Expect = 8e-68
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 291 ggtcctacatcgccaatcgagtgactgacaagctgactcctattcacgaccgtattttct 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54318116 ggtcctacatcgccaatcgagtgactgacaagctgactcctattcacgaccgtattttct 54318057
Query: 351 gctgccgctcaggctcagcagctgatacccaggcagtagctgatgcagtcacatatcagc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54318056 gctgccgctcaggctcagcagctgatacccaggcagtagctgatgcagtcacatatcagc 54317997
Query: 411 ttggtttccacag 423
|||||||||||||
Sbjct: 54317996 ttggtttccacag 54317984
Score = 141 bits (71), Expect = 8e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 223 gaccactatcatggccgtgcaattcgatgggggcgtggttctaggagccgactccagaac 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54318505 gaccactatcatggccgtgcaattcgatgggggcgtggttctaggagccgactccagaac 54318446
Query: 283 aaccactgggt 293
|||||||||||
Sbjct: 54318445 aaccactgggt 54318435
>Sscrofa_Chr09
|| Length = 153670197
Score = 198 bits (100), Expect = 4e-48
Identities = 252/299 (84%), Gaps = 4/299 (1%)
Strand = Plus / Plus
Query: 611 tctgggagctcctatatctacggctatgtggatgctacctaccgggaaggcatgaccaag 670
||||||||||||| | ||| | |||||||||||||| |||| |||||||||||||||||
Sbjct: 71566399 tctgggagctcctgtgtctgtgactatgtggatgctatctactgggaaggcatgaccaag 71566458
Query: 671 gaagagtgtctgcagttcactgccaatgctcttgctttggccatggagcgggacggctcc 730
||||||||||||| | |||||||| | || || |||| |||||| |||| ||| |
Sbjct: 71566459 gaagagtgtctgccatccactgccagggttcacactatggctatggagtgggatggc--c 71566516
Query: 731 agcggaggggtgatccgcttagcagccattgcagaatcaggggtcgagcgacaggtactt 790
| ||||||| ||||| || ||||||| ||||||||||||||| ||| | |||||||||
Sbjct: 71566517 tgtggagggg-gatcccctg-gcagccactgcagaatcaggggtagagtggcaggtactt 71566574
Query: 791 ttgggagaccagattcccaaattcaccattgccactttacctcctccctgaatcttggga 850
|||||||||||| |||||||||||||||| ||||||| ||| |||||| |||| ||||
Sbjct: 71566575 ttgggagaccaggttcccaaattcaccatggccacttcaccacctcccgaaatcctgggg 71566634
Query: 851 ttctaagctacaataagagacaccccctactaatgcaaaattcaataaacagtttgtca 909
||||||| | ||||| ||||||||| |||| ||||||||| |||||||||||||||||
Sbjct: 71566635 ttctaagacataataacagacaccccatactgatgcaaaatgcaataaacagtttgtca 71566693
Score = 89.7 bits (45), Expect = 3e-15
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 364 ctcagcagctgatacccaggcagtagctgatgcagtcacatatcagcttggtttccacag 423
|||||||||| |||||||||| |||||||||||||||| |||||||| | |||||||||
Sbjct: 71566145 ctcagcagctattacccaggcaatagctgatgcagtcacttatcagctcgttttccacag 71566204
Query: 424 cattgagct 432
|||||||||
Sbjct: 71566205 cattgagct 71566213
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,725,800
Number of extensions: 120
Number of successful extensions: 120
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 9
Length of query: 938
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 917
Effective length of database: 2,808,413,156
Effective search space: 2575314864052
Effective search space used: 2575314864052
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)