Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007865
(937 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068838.1| kynurenine--oxoglutarate transaminase 3 [Bos... 454 e-128
Alignment gi|XP_001790564.1| PREDICTED: kynurenine aminotransferase I-lik... 276 8e-80
Alignment gi|NP_001071446.1| kynurenine--oxoglutarate transaminase 1 [Bos... 275 1e-79
Alignment gi|XP_002706546.1| PREDICTED: kynurenine aminotransferase I-lik... 267 4e-77
Alignment gi|XP_001250330.1| PREDICTED: kynurenine aminotransferase I-lik... 267 4e-77
Alignment gi|XP_002706547.1| PREDICTED: kynurenine aminotransferase I-lik... 267 4e-77
Alignment gi|NP_001029762.1| tyrosine aminotransferase [Bos taurus]. 57 2e-09
Alignment gi|NP_001015526.1| 1-aminocyclopropane-1-carboxylate synthase-l... 54 1e-07
>ref|NP_001068838.1| kynurenine--oxoglutarate transaminase 3 [Bos taurus].
Length = 455
Score = 454 bits (1168), Expect = e-128
Identities = 224/280 (80%), Positives = 246/280 (87%), Gaps = 2/280 (0%)
Frame = +3
Query: 72 MFLAQRSLCNLGS--KVLRTVSASKILGLSTSTEMSSKFKNAKRIEGLDSNVWVEFTQLA 245
MFLA LC L K L+TV ASKILGLSTS +MS +FKNAKRIEGLDSN+W+EFT+LA
Sbjct: 1 MFLAWERLCTLSCRPKFLKTVWASKILGLSTSAKMSLRFKNAKRIEGLDSNIWIEFTKLA 60
Query: 246 ADPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFYQK 425
ADP+VVNLGQGLPDISPP YVKE+LSKIAA+D++NQYTRGFGH SLVKALSCLY KFY
Sbjct: 61 ADPSVVNLGQGLPDISPPVYVKEELSKIAAIDNLNQYTRGFGHPSLVKALSCLYEKFYHN 120
Query: 426 QINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFVPLRS 605
+INP EEI+VTVGAYGSLFNAIQG I+EGDEVIV+VPF+DCY MV MAG TPVFVPLR
Sbjct: 121 KINPNEEILVTVGAYGSLFNAIQGLIDEGDEVIVIVPFFDCYESMVRMAGATPVFVPLRC 180
Query: 606 KPVDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLCIKHD 785
KPVDGK+ SSDWTLDPQELASKFNSKTKAIILNTPHNPLGKV+T+EELQVIADLCIK+D
Sbjct: 181 KPVDGKKCSSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVYTKEELQVIADLCIKYD 240
Query: 786 TLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP*EVLGK 905
TLCISDEVYEW+VYTG KHFKI FPGMWE+TI GK
Sbjct: 241 TLCISDEVYEWLVYTGNKHFKIATFPGMWERTITIGSAGK 280
>ref|XP_001790564.1| PREDICTED: kynurenine aminotransferase I-like isoform 1 [Bos
taurus].
Length = 425
Score = 276 bits (705), Expect(2) = 8e-80
Identities = 133/247 (53%), Positives = 176/247 (71%), Gaps = 3/247 (1%)
Frame = +3
Query: 174 SKFKNAKRIEGLDSNVWVEFTQLAADPT-VVNLGQGLPDISPPEYVKEKLSKIAAVDSM- 347
+K A+R++G+D N WVEF QLA++ VVNLGQG PD SPPE+ E + D M
Sbjct: 2 AKRLQARRLDGIDHNPWVEFVQLASEEADVVNLGQGFPDFSPPEFAVEAFQHAVSGDFML 61
Query: 348 NQYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIV 527
NQYT+ FG+ L K L+ +GK ++I+P + ++VTVGAYG+LF A Q ++EGDEVI+
Sbjct: 62 NQYTKAFGYPPLTKILASFFGKLLGQEIDPLKNVLVTVGAYGALFTAFQALVDEGDEVII 121
Query: 528 MVPFYDCYGPMVSMAGGTPVFVPLRSKPVD-GKRWCSSDWTLDPQELASKFNSKTKAIIL 704
+ PF+DCY PM MAGG PVFV L+ P G+ SS+W LDP ELASKF S+TKA IL
Sbjct: 122 IEPFFDCYEPMTLMAGGRPVFVSLKPSPTQKGEPDSSSNWQLDPTELASKFTSRTKAFIL 181
Query: 705 NTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTI 884
NTP+NPLGKVF++EEL+++A LC +HD +CISDEVY+W+V+ G +H I PGMWE+T+
Sbjct: 182 NTPNNPLGKVFSKEELELVASLCQQHDVVCISDEVYQWMVFDGFQHISIASLPGMWERTL 241
Query: 885 P*EVLGK 905
GK
Sbjct: 242 TIGSAGK 248
Score = 40.4 bits (93), Expect(2) = 8e-80
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGKTF+VTGWK+GW
Sbjct: 242 TIGSAGKTFSVTGWKVGW 259
>ref|NP_001071446.1| kynurenine--oxoglutarate transaminase 1 [Bos taurus].
Length = 425
Score = 275 bits (703), Expect(2) = 1e-79
Identities = 133/247 (53%), Positives = 176/247 (71%), Gaps = 3/247 (1%)
Frame = +3
Query: 174 SKFKNAKRIEGLDSNVWVEFTQLAADPT-VVNLGQGLPDISPPEYVKEKLSKIAAVDSM- 347
+K A+R++G+D N WVEF QLA++ VVNLGQG PD SPPE+ E + D M
Sbjct: 2 AKRLQARRLDGIDHNPWVEFVQLASEEADVVNLGQGFPDFSPPEFAVEAFQHAVSGDFML 61
Query: 348 NQYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIV 527
NQYT+ FG+ L K L+ +GK ++I+P + ++VTVGAYG+LF A Q ++EGDEVI+
Sbjct: 62 NQYTKAFGYPPLTKILANFFGKLLGQEIDPLKNVLVTVGAYGALFTAFQALVDEGDEVII 121
Query: 528 MVPFYDCYGPMVSMAGGTPVFVPLRSKPVD-GKRWCSSDWTLDPQELASKFNSKTKAIIL 704
+ PF+DCY PM MAGG PVFV L+ P G+ SS+W LDP ELASKF S+TKA IL
Sbjct: 122 IEPFFDCYEPMTLMAGGRPVFVSLKPSPTQKGEPDSSSNWQLDPTELASKFTSRTKAFIL 181
Query: 705 NTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTI 884
NTP+NPLGKVF++EEL+++A LC +HD +CISDEVY+W+V+ G +H I PGMWE+T+
Sbjct: 182 NTPNNPLGKVFSKEELELVASLCQQHDVVCISDEVYQWMVFDGFQHISIASLPGMWERTL 241
Query: 885 P*EVLGK 905
GK
Sbjct: 242 TIGSAGK 248
Score = 40.4 bits (93), Expect(2) = 1e-79
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGKTF+VTGWK+GW
Sbjct: 242 TIGSAGKTFSVTGWKVGW 259
>ref|XP_002706546.1| PREDICTED: kynurenine aminotransferase I-like isoform 1 [Bos
taurus].
Length = 425
Score = 267 bits (682), Expect(2) = 4e-77
Identities = 131/247 (53%), Positives = 175/247 (70%), Gaps = 3/247 (1%)
Frame = +3
Query: 174 SKFKNAKRIEGLDSNVWVEFTQLAADPT-VVNLGQGLPDISPPEYVKEKLSKIAAVDSM- 347
+K A+R++G+D + VEF QLA++ VVNLGQG PD SPPE+ E + D M
Sbjct: 2 AKRLQAQRLDGIDYSPRVEFVQLASEEADVVNLGQGFPDFSPPEFAVEAFQHAVSGDFML 61
Query: 348 NQYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIV 527
NQYT+ FG+ L K L+ +GK ++I+P + ++VTVGAYG+LF A Q ++EGDEVI+
Sbjct: 62 NQYTKAFGYPPLTKILANFFGKLLGQEIDPLKNVLVTVGAYGALFTAFQALVDEGDEVII 121
Query: 528 MVPFYDCYGPMVSMAGGTPVFVPLRSKPVD-GKRWCSSDWTLDPQELASKFNSKTKAIIL 704
+ PF+DCY PM MAGG PVFV L+ P G+ SS+W LDP ELASKF S+TKA IL
Sbjct: 122 IEPFFDCYEPMTLMAGGRPVFVSLKPSPTQKGEPDSSSNWQLDPTELASKFTSRTKAFIL 181
Query: 705 NTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTI 884
NTP+NPLGKVF++EEL+++A LC +HD +CISDEVY+W+V+ G +H I PGMWE+T+
Sbjct: 182 NTPNNPLGKVFSKEELELVASLCQQHDVVCISDEVYQWMVFDGFQHISIASLPGMWERTL 241
Query: 885 P*EVLGK 905
GK
Sbjct: 242 TIGSAGK 248
Score = 40.4 bits (93), Expect(2) = 4e-77
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGKTF+VTGWK+GW
Sbjct: 242 TIGSAGKTFSVTGWKVGW 259
>ref|XP_001250330.1| PREDICTED: kynurenine aminotransferase I-like [Bos taurus].
Length = 425
Score = 267 bits (682), Expect(2) = 4e-77
Identities = 131/247 (53%), Positives = 175/247 (70%), Gaps = 3/247 (1%)
Frame = +3
Query: 174 SKFKNAKRIEGLDSNVWVEFTQLAADPT-VVNLGQGLPDISPPEYVKEKLSKIAAVDSM- 347
+K A+R++G+D + VEF QLA++ VVNLGQG PD SPPE+ E + D M
Sbjct: 2 AKRLQAQRLDGIDYSPRVEFVQLASEEADVVNLGQGFPDFSPPEFAVEAFQHAVSGDFML 61
Query: 348 NQYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIV 527
NQYT+ FG+ L K L+ +GK ++I+P + ++VTVGAYG+LF A Q ++EGDEVI+
Sbjct: 62 NQYTKAFGYPPLTKILANFFGKLLGQEIDPLKNVLVTVGAYGALFTAFQALVDEGDEVII 121
Query: 528 MVPFYDCYGPMVSMAGGTPVFVPLRSKPVD-GKRWCSSDWTLDPQELASKFNSKTKAIIL 704
+ PF+DCY PM MAGG PVFV L+ P G+ SS+W LDP ELASKF S+TKA IL
Sbjct: 122 IEPFFDCYEPMTLMAGGRPVFVSLKPSPTQKGEPDSSSNWQLDPTELASKFTSRTKAFIL 181
Query: 705 NTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTI 884
NTP+NPLGKVF++EEL+++A LC +HD +CISDEVY+W+V+ G +H I PGMWE+T+
Sbjct: 182 NTPNNPLGKVFSKEELELVASLCQQHDVVCISDEVYQWMVFDGFQHISIASLPGMWERTL 241
Query: 885 P*EVLGK 905
GK
Sbjct: 242 TIGSAGK 248
Score = 40.4 bits (93), Expect(2) = 4e-77
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGKTF+VTGWK+GW
Sbjct: 242 TIGSAGKTFSVTGWKVGW 259
>ref|XP_002706547.1| PREDICTED: kynurenine aminotransferase I-like isoform 2 [Bos
taurus].
Length = 402
Score = 267 bits (682), Expect(2) = 4e-77
Identities = 131/247 (53%), Positives = 175/247 (70%), Gaps = 3/247 (1%)
Frame = +3
Query: 174 SKFKNAKRIEGLDSNVWVEFTQLAADPT-VVNLGQGLPDISPPEYVKEKLSKIAAVDSM- 347
+K A+R++G+D + VEF QLA++ VVNLGQG PD SPPE+ E + D M
Sbjct: 2 AKRLQAQRLDGIDYSPRVEFVQLASEEADVVNLGQGFPDFSPPEFAVEAFQHAVSGDFML 61
Query: 348 NQYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIV 527
NQYT+ FG+ L K L+ +GK ++I+P + ++VTVGAYG+LF A Q ++EGDEVI+
Sbjct: 62 NQYTKAFGYPPLTKILANFFGKLLGQEIDPLKNVLVTVGAYGALFTAFQALVDEGDEVII 121
Query: 528 MVPFYDCYGPMVSMAGGTPVFVPLRSKPVD-GKRWCSSDWTLDPQELASKFNSKTKAIIL 704
+ PF+DCY PM MAGG PVFV L+ P G+ SS+W LDP ELASKF S+TKA IL
Sbjct: 122 IEPFFDCYEPMTLMAGGRPVFVSLKPSPTQKGEPDSSSNWQLDPTELASKFTSRTKAFIL 181
Query: 705 NTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTI 884
NTP+NPLGKVF++EEL+++A LC +HD +CISDEVY+W+V+ G +H I PGMWE+T+
Sbjct: 182 NTPNNPLGKVFSKEELELVASLCQQHDVVCISDEVYQWMVFDGFQHISIASLPGMWERTL 241
Query: 885 P*EVLGK 905
GK
Sbjct: 242 TIGSAGK 248
Score = 40.4 bits (93), Expect(2) = 4e-77
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGKTF+VTGWK+GW
Sbjct: 242 TIGSAGKTFSVTGWKVGW 259
>ref|NP_001029762.1| tyrosine aminotransferase [Bos taurus].
Length = 447
Score = 57.0 bits (136), Expect(2) = 2e-09
Identities = 60/251 (23%), Positives = 104/251 (41%), Gaps = 7/251 (2%)
Frame = +3
Query: 108 SKVLRTVSASKILGLSTSTEMSSKFKNAKR--IEGLDSNVWVEFTQLA---ADPTVVNLG 272
S VL V + K ++MS+K N R ++ + T +A DPTV
Sbjct: 21 SSVLGKVKSRKARWSVRPSDMSNKTFNPIRAIVDNMKVKPNPNKTMIALSIGDPTVFG-- 78
Query: 273 QGLPDISPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFYQKQINPTE--E 446
LP + PE V + + N Y G+LS + ++ +Y P E +
Sbjct: 79 -NLP--TDPE-VTQAMKDALDSGKFNGYVPSIGYLSSREEVA----SYYHCPEAPLEAKD 130
Query: 447 IVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFVPLRSKPVDGKR 626
+++T G ++ + G ++V P + Y + G L +
Sbjct: 131 VILTSGCSQAIELCLAVLANPGQNILVPRPGFSLYRTLAESMGIEVKLYNLLPE------ 184
Query: 627 WCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLCIKHDTLCISDE 806
+W +D ++L S + KT +I+N P NP G VF+R LQ I + + ++DE
Sbjct: 185 ---KNWEIDLKQLESLIDEKTVCLIVNNPSNPCGSVFSRRHLQKILAVAARQCVPILADE 241
Query: 807 VYEWIVYTGKK 839
+Y +V++ K
Sbjct: 242 IYGDMVFSDSK 252
Score = 23.1 bits (48), Expect(2) = 2e-09
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +2
Query: 890 GSAGKTFNVTGWKLGW 937
G K + V GW++GW
Sbjct: 269 GGLAKRWLVPGWRMGW 284
>ref|NP_001015526.1| 1-aminocyclopropane-1-carboxylate synthase-like protein 1 [Bos
taurus].
Length = 502
Score = 54.3 bits (129), Expect = 1e-07
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Frame = +3
Query: 351 QYTRGFGHLSLVKALSCLYGKFYQKQINPTE-EIVVTVGAYGSLFNAIQGFI-EEGDEVI 524
QY GHL L + ++ + FY + P + E VV + SLF+A+ + E G+ +
Sbjct: 132 QYPDWRGHLFLREEVA-RFLSFYCRSPAPLKPENVVVLNGCASLFSALATVLCEAGEAFL 190
Query: 525 VMVPFYDCYGPMVSMAGGTPVFVPLRSKPVDGKRWCSSDWTLDPQELASK-FNS---KTK 692
+ P+Y V + G + V G T++ E+A + NS K K
Sbjct: 191 IPAPYYGAITQHVYLYGNVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANSEGVKVK 250
Query: 693 AIILNTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVY 827
+IL P NPLG +++ ELQ + +H+ + DEVY V+
Sbjct: 251 GLILINPQNPLGDIYSPGELQEYLEFAKRHELHVMVDEVYMLSVF 295
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,615,352
Number of extensions: 916187
Number of successful extensions: 2477
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2456
Number of HSP's successfully gapped: 14
Length of query: 312
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,306,398
Effective search space: 3004343580
Effective search space used: 3004343580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007865
(937 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537084.1| PREDICTED: similar to kynurenine aminotransfera... 462 e-130
Alignment gi|XP_548431.2| PREDICTED: similar to Kynurenine--oxoglutarate ... 268 1e-76
Alignment gi|XP_867236.1| PREDICTED: similar to kynurenine aminotransfera... 209 2e-54
Alignment gi|XP_536796.2| PREDICTED: similar to Tyrosine aminotransferase... 56 2e-09
Alignment gi|XP_854150.1| PREDICTED: similar to 1-aminocyclopropane-1-car... 55 7e-08
>ref|XP_537084.1| PREDICTED: similar to kynurenine aminotransferase III isoform 1
isoform 1 [Canis familiaris].
Length = 455
Score = 462 bits (1190), Expect = e-130
Identities = 224/280 (80%), Positives = 249/280 (88%), Gaps = 2/280 (0%)
Frame = +3
Query: 72 MFLAQRSLCNLGS--KVLRTVSASKILGLSTSTEMSSKFKNAKRIEGLDSNVWVEFTQLA 245
MFLAQR C+L S K L+T+ +SKILGL TS +MS K NAKRIEGLDSNVW+EFT+LA
Sbjct: 1 MFLAQRRFCSLESRAKFLKTIYSSKILGLPTSAKMSLKITNAKRIEGLDSNVWIEFTKLA 60
Query: 246 ADPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFYQK 425
ADP+VVNLGQGLPDISPP YVKE+LSKIAA+DS+NQYTRGFGH SLVKALSCLY KFYQ
Sbjct: 61 ADPSVVNLGQGLPDISPPIYVKEELSKIAAIDSLNQYTRGFGHPSLVKALSCLYEKFYQN 120
Query: 426 QINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFVPLRS 605
INP +EI+VT+GAYGSLFNAIQG I+EGDEVI++VPFYDCY PMV MAGGTPVF+PLRS
Sbjct: 121 PINPNKEILVTIGAYGSLFNAIQGLIDEGDEVIIIVPFYDCYEPMVRMAGGTPVFIPLRS 180
Query: 606 KPVDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLCIKHD 785
KPVDGK+W SSDWTLDPQELASKFNSKTKAIILNTPHNP+GKV+T+EELQVIADLCIK+D
Sbjct: 181 KPVDGKKWSSSDWTLDPQELASKFNSKTKAIILNTPHNPIGKVYTKEELQVIADLCIKYD 240
Query: 786 TLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP*EVLGK 905
TLCISDEVYEW+VYTG KH KI FPGMWE+TI GK
Sbjct: 241 TLCISDEVYEWLVYTGNKHLKIATFPGMWERTITIGSAGK 280
>ref|XP_548431.2| PREDICTED: similar to Kynurenine--oxoglutarate transaminase I
(Kynurenine aminotransferase I) (KATI)
(Glutamine--phenylpyruvate transaminase) (Glutamine
transaminase K) (GTK) (Cysteine-S-conjugate beta-lyase)
[Canis familiaris].
Length = 424
Score = 268 bits (686), Expect(2) = 1e-76
Identities = 124/241 (51%), Positives = 174/241 (72%), Gaps = 2/241 (0%)
Frame = +3
Query: 189 AKRIEGLDSNVWVEFTQLAADPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSM-NQYTRG 365
A+R++G+D N WVE T++A++ VNLGQG PD PP++ + + D M NQYT+
Sbjct: 7 ARRLDGIDHNPWVECTKMASEYDAVNLGQGFPDFPPPDFALQAFQLALSSDFMLNQYTKA 66
Query: 366 FGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYD 545
FG+ L K L+ +GK ++I+P + ++VTVGAYG+LF A Q ++EGDEVI++ PF+D
Sbjct: 67 FGYPPLTKILASFFGKLLGQEIDPLKNVLVTVGAYGALFTAFQALVDEGDEVIIIEPFFD 126
Query: 546 CYGPMVSMAGGTPVFVPLRSKPV-DGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNP 722
CY PM MAGG PVFV L+ P DG+ +S+W LDP ELASKF S+TKA+ILNTP+NP
Sbjct: 127 CYEPMTLMAGGHPVFVTLKPSPTQDGELDSASNWQLDPTELASKFTSRTKALILNTPNNP 186
Query: 723 LGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP*EVLG 902
+GKVF++ EL+++A+LC +HD +CI+DEVY+W+VY G +H I PGMWE+T+ G
Sbjct: 187 VGKVFSKAELELVANLCQQHDVICITDEVYQWLVYDGYQHTSIASLPGMWERTLTIGSAG 246
Query: 903 K 905
K
Sbjct: 247 K 247
Score = 37.4 bits (85), Expect(2) = 1e-76
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGK+F+ TGWK+GW
Sbjct: 241 TIGSAGKSFSATGWKVGW 258
>ref|XP_867236.1| PREDICTED: similar to kynurenine aminotransferase III isoform 1
isoform 2 [Canis familiaris].
Length = 291
Score = 209 bits (533), Expect = 2e-54
Identities = 97/116 (83%), Positives = 105/116 (90%)
Frame = +3
Query: 558 MVSMAGGTPVFVPLRSKPVDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVF 737
MV MAGGTPVF+PLRSKPVDGK+W SSDWTLDPQELASKFNSKTKAIILNTPHNP+GKV+
Sbjct: 1 MVRMAGGTPVFIPLRSKPVDGKKWSSSDWTLDPQELASKFNSKTKAIILNTPHNPIGKVY 60
Query: 738 TREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP*EVLGK 905
T+EELQVIADLCIK+DTLCISDEVYEW+VYTG KH KI FPGMWE+TI GK
Sbjct: 61 TKEELQVIADLCIKYDTLCISDEVYEWLVYTGNKHLKIATFPGMWERTITIGSAGK 116
>ref|XP_536796.2| PREDICTED: similar to Tyrosine aminotransferase
(L-tyrosine:2-oxoglutarate aminotransferase) (TAT)
[Canis familiaris].
Length = 454
Score = 56.2 bits (134), Expect(2) = 2e-09
Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 2/199 (1%)
Frame = +3
Query: 249 DPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFYQKQ 428
DPTV LP + PE V + + N Y G+LS + ++ +Y +
Sbjct: 80 DPTVFG---NLP--TDPE-VTQAMKDALDSGKYNGYAPSIGYLSSREEIA----SYYHRP 129
Query: 429 INPTE--EIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFVPLR 602
P E ++++T G ++ + G ++V P + Y + G L
Sbjct: 130 EAPLEAKDVILTSGCSQAIELCLAVLANPGQNILVPRPGFSLYRTLAESMGIEVKLYNLL 189
Query: 603 SKPVDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLCIKH 782
+ W +D ++L S + KT +I+N P NP G VF++ LQ I + +
Sbjct: 190 PE---------KSWEIDLKQLESLIDEKTACLIVNNPSNPCGSVFSKSHLQKILAVAARQ 240
Query: 783 DTLCISDEVYEWIVYTGKK 839
++DE+Y +V++ K
Sbjct: 241 CVPILADEIYGDMVFSDSK 259
Score = 23.9 bits (50), Expect(2) = 2e-09
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 890 GSAGKTFNVTGWKLGW 937
G K + V GW+LGW
Sbjct: 276 GGLAKRWLVPGWRLGW 291
>ref|XP_854150.1| PREDICTED: similar to 1-aminocyclopropane-1-carboxylate synthase
[Canis familiaris].
Length = 603
Score = 55.5 bits (132), Expect = 7e-08
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 6/168 (3%)
Frame = +3
Query: 342 SMNQYTRGFGHLSLVKALSCLYGKFYQKQINPTE-EIVVTVGAYGSLFNAIQGFI-EEGD 515
S+ QY GHL L + ++ + FY K P + E VV + SLF+A+ + E G+
Sbjct: 127 SLLQYPDWRGHLFLREEVA-RFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEVGE 185
Query: 516 EVIVMVPFYDCYGPMVSMAGGTPVFVPLRSKPVDGKRWCSSDWTLDPQELASKF----NS 683
++ P+Y V + G + V G T++ E+A +
Sbjct: 186 AFLIPAPYYGAITQHVCLYGNVRLVCVHLDSEVTGLDTRPFQLTVEKLEMALQRAHSEGV 245
Query: 684 KTKAIILNTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVY 827
K K +IL PHNPLG +++ EL+ + +H+ + DEVY V+
Sbjct: 246 KVKGLILINPHNPLGDIYSPGELRDYLEFAKRHELHVMVDEVYMLSVF 293
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,301,488
Number of extensions: 954831
Number of successful extensions: 2537
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2529
Number of HSP's successfully gapped: 7
Length of query: 312
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 209
Effective length of database: 15,440,896
Effective search space: 3227147264
Effective search space used: 3227147264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007865
(937 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929419.2| PREDICTED: kynurenine--oxoglutarate transami... 546 e-156
Alignment gi|XP_003125974.1| PREDICTED: kynurenine--oxoglutarate transami... 546 e-156
Alignment gi|XP_003122257.1| PREDICTED: kynurenine--oxoglutarate transami... 271 4e-78
Alignment gi|XP_003353726.1| PREDICTED: kynurenine--oxoglutarate transami... 199 2e-56
Alignment gi|XP_003122900.1| PREDICTED: 1-aminocyclopropane-1-carboxylate... 65 7e-11
>ref|XP_001929419.2| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 1 [Sus
scrofa].
Length = 453
Score = 546 bits (1407), Expect = e-156
Identities = 270/278 (97%), Positives = 271/278 (97%)
Frame = +3
Query: 72 MFLAQRSLCNLGSKVLRTVSASKILGLSTSTEMSSKFKNAKRIEGLDSNVWVEFTQLAAD 251
MFLAQRSLCNLGSKVLRTVSASKILGLSTSTEMSSKFKNAKRIEGLDSNVWVEFTQLAAD
Sbjct: 1 MFLAQRSLCNLGSKVLRTVSASKILGLSTSTEMSSKFKNAKRIEGLDSNVWVEFTQLAAD 60
Query: 252 PTVVNLGQGLPDISPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFYQKQI 431
PTVVNLGQGLPDISPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFYQKQI
Sbjct: 61 PTVVNLGQGLPDISPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFYQKQI 120
Query: 432 NPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFVPLRSKP 611
NPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFVPLRSKP
Sbjct: 121 NPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFVPLRSKP 180
Query: 612 VDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLCIKHDTL 791
VDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLCIKHDTL
Sbjct: 181 VDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLCIKHDTL 240
Query: 792 CISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP*EVLGK 905
CISDEVYEWIVYTGKKHFKI FPGMWE+TI GK
Sbjct: 241 CISDEVYEWIVYTGKKHFKIATFPGMWERTITIGSAGK 278
>ref|XP_003125974.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 2 [Sus
scrofa].
Length = 453
Score = 546 bits (1407), Expect = e-156
Identities = 270/278 (97%), Positives = 271/278 (97%)
Frame = +3
Query: 72 MFLAQRSLCNLGSKVLRTVSASKILGLSTSTEMSSKFKNAKRIEGLDSNVWVEFTQLAAD 251
MFLAQRSLCNLGSKVLRTVSASKILGLSTSTEMSSKFKNAKRIEGLDSNVWVEFTQLAAD
Sbjct: 1 MFLAQRSLCNLGSKVLRTVSASKILGLSTSTEMSSKFKNAKRIEGLDSNVWVEFTQLAAD 60
Query: 252 PTVVNLGQGLPDISPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFYQKQI 431
PTVVNLGQGLPDISPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFYQKQI
Sbjct: 61 PTVVNLGQGLPDISPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFYQKQI 120
Query: 432 NPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFVPLRSKP 611
NPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFVPLRSKP
Sbjct: 121 NPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFVPLRSKP 180
Query: 612 VDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLCIKHDTL 791
VDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLCIKHDTL
Sbjct: 181 VDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLCIKHDTL 240
Query: 792 CISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP*EVLGK 905
CISDEVYEWIVYTGKKHFKI FPGMWE+TI GK
Sbjct: 241 CISDEVYEWIVYTGKKHFKIATFPGMWERTITIGSAGK 278
>ref|XP_003122257.1| PREDICTED: kynurenine--oxoglutarate transaminase 1 isoform 1 [Sus
scrofa].
Length = 458
Score = 271 bits (694), Expect(2) = 4e-78
Identities = 126/246 (51%), Positives = 174/246 (70%), Gaps = 2/246 (0%)
Frame = +3
Query: 174 SKFKNAKRIEGLDSNVWVEFTQLAADPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSM-N 350
+K A+R++G+D N WVEF +LA++ VVNLGQG PD PP++ E + D M N
Sbjct: 36 AKRLQARRLDGIDHNPWVEFVKLASEADVVNLGQGFPDFPPPDFALEAFQHAVSGDFMLN 95
Query: 351 QYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVM 530
QYT+ FG+ L K L+ +GK ++++P + ++VTVGAYG+LF A Q ++EGDEVI++
Sbjct: 96 QYTKAFGYPPLTKILASFFGKLLGQELDPLKNVLVTVGAYGALFTAFQALVDEGDEVIII 155
Query: 531 VPFYDCYGPMVSMAGGTPVFVPLRSKPV-DGKRWCSSDWTLDPQELASKFNSKTKAIILN 707
PF+DCY PM MAGG PVFV L+ P DG+ SS+W LDP ELASKF +TKA++LN
Sbjct: 156 EPFFDCYEPMTLMAGGLPVFVSLKPSPAQDGELDSSSNWQLDPMELASKFTPRTKALVLN 215
Query: 708 TPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP 887
TP+NPLGKVF++ EL+++A LC +HD +CI+DEVY+W+VY +H I PGMWE+T+
Sbjct: 216 TPNNPLGKVFSKPELELVASLCQQHDVVCIADEVYQWLVYDQYQHISIASLPGMWERTLT 275
Query: 888 *EVLGK 905
GK
Sbjct: 276 VGSAGK 281
Score = 38.5 bits (88), Expect(2) = 4e-78
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGKTF+ TGWK+GW
Sbjct: 275 TVGSAGKTFSATGWKVGW 292
>ref|XP_003353726.1| PREDICTED: kynurenine--oxoglutarate transaminase 1 [Sus scrofa].
Length = 374
Score = 199 bits (506), Expect(2) = 2e-56
Identities = 104/246 (42%), Positives = 139/246 (56%), Gaps = 2/246 (0%)
Frame = +3
Query: 174 SKFKNAKRIEGLDSNVWVEFTQLAADPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSM-N 350
+K A+R++G+D N WVEF +LA++ VVNLGQG PD PP++ E + D M N
Sbjct: 2 AKRLQARRLDGIDHNPWVEFVKLASEADVVNLGQGFPDFPPPDFALEAFQHAVSGDFMLN 61
Query: 351 QYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVM 530
QYT+ F VI++
Sbjct: 62 QYTKAF--------------------------------------------------VIII 71
Query: 531 VPFYDCYGPMVSMAGGTPVFVPLRSKPV-DGKRWCSSDWTLDPQELASKFNSKTKAIILN 707
PF+DCY PM MAGG PVFV L+ P DG+ SS+W LDP ELASKF +TKA++LN
Sbjct: 72 EPFFDCYEPMTLMAGGLPVFVSLKPSPAQDGELDSSSNWQLDPMELASKFTPRTKALVLN 131
Query: 708 TPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP 887
TP+NPLGKVF++ EL+++A LC +HD +CI+DEVY+W+VY +H I PGMWE+T+
Sbjct: 132 TPNNPLGKVFSKPELELVASLCQQHDVVCIADEVYQWLVYDQYQHISIASLPGMWERTLT 191
Query: 888 *EVLGK 905
GK
Sbjct: 192 VGSAGK 197
Score = 38.5 bits (88), Expect(2) = 2e-56
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGKTF+ TGWK+GW
Sbjct: 191 TVGSAGKTFSATGWKVGW 208
>ref|XP_003122900.1| PREDICTED: 1-aminocyclopropane-1-carboxylate synthase-like protein
1-like [Sus scrofa].
Length = 506
Score = 64.7 bits (156), Expect = 7e-11
Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 6/174 (3%)
Frame = +3
Query: 342 SMNQYTRGFGHLSLVKALSCLYGKFYQKQINPTE-EIVVTVGAYGSLFNAIQGFI-EEGD 515
S+ QY GHL L + ++ + FY K P + E VV + SLF+A+ + E G+
Sbjct: 129 SLLQYPDWRGHLFLREEVA-RFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGE 187
Query: 516 EVIVMVPFYDCYGPMVSMAGGTPVFVPLRSKPVDGKRWCSSDWTLDPQELASK-FNS--- 683
++ P+Y V + GG + V G T++ E+A + NS
Sbjct: 188 AFLIPAPYYGSITQHVCLYGGVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQGANSEGV 247
Query: 684 KTKAIILNTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHF 845
K K +IL PHNPLG V++ ELQ D +H+ I DE+Y V+ F
Sbjct: 248 KVKGLILINPHNPLGDVYSLGELQEYLDFAKRHELHVIVDEIYLLSVFEKSVEF 301
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,904,017
Number of extensions: 585900
Number of successful extensions: 1517
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1508
Number of HSP's successfully gapped: 8
Length of query: 312
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 213
Effective length of database: 8,879,129
Effective search space: 1891254477
Effective search space used: 1891254477
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007865
(937 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776124.1| kynurenine--oxoglutarate transaminase 3 [Mus mu... 410 e-120
Alignment gi|NP_765992.2| kynurenine--oxoglutarate transaminase 1 [Mus mu... 268 2e-76
Alignment gi|NP_899043.1| 1-aminocyclopropane-1-carboxylate synthase-like... 60 3e-09
Alignment gi|NP_666326.1| tyrosine aminotransferase [Mus musculus]. 54 1e-08
>ref|NP_776124.1| kynurenine--oxoglutarate transaminase 3 [Mus musculus].
Length = 420
Score = 410 bits (1054), Expect(2) = e-120
Identities = 192/246 (78%), Positives = 215/246 (87%)
Frame = +3
Query: 168 MSSKFKNAKRIEGLDSNVWVEFTQLAADPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSM 347
M+ KFKNAKRIEGLDSNVWVEFT+LAADP+VVNLGQG PDISPP YVKE+LSK A +D+M
Sbjct: 1 MALKFKNAKRIEGLDSNVWVEFTKLAADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNM 60
Query: 348 NQYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIV 527
NQYTRGFGH +LVKALSCLYGK YQ+QI+P EEI+V VGAYGSLFN+IQG ++ GDEVI+
Sbjct: 61 NQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVII 120
Query: 528 MVPFYDCYGPMVSMAGGTPVFVPLRSKPVDGKRWCSSDWTLDPQELASKFNSKTKAIILN 707
MVPFYDCY PMV MAG PVF+PLRSKP DG +W SSDWT DP+EL SKF+SKTKAIILN
Sbjct: 121 MVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILN 180
Query: 708 TPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP 887
TPHNPLGKV+TR+ELQVIADLC+KHDTLCISDEVYEW+VYTG H KI PGMWE+TI
Sbjct: 181 TPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTIT 240
Query: 888 *EVLGK 905
GK
Sbjct: 241 IGSAGK 246
Score = 41.6 bits (96), Expect(2) = e-120
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGKTF+VTGWKLGW
Sbjct: 240 TIGSAGKTFSVTGWKLGW 257
>ref|NP_765992.2| kynurenine--oxoglutarate transaminase 1 [Mus musculus].
Length = 424
Score = 268 bits (684), Expect(2) = 2e-76
Identities = 126/246 (51%), Positives = 172/246 (69%), Gaps = 2/246 (0%)
Frame = +3
Query: 174 SKFKNAKRIEGLDSNVWVEFTQLAADPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSM-N 350
SK A+R+EG+D N WVEFT+L+ + VVNLGQG PD SPP++ + + + M N
Sbjct: 2 SKQLQARRLEGIDHNPWVEFTRLSKEYDVVNLGQGFPDFSPPDFAVQAFQQATTGNFMLN 61
Query: 351 QYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVM 530
QYT FG+ L K L+ +GK ++++P + ++VTVGAYG+LF A Q ++EGDEVI++
Sbjct: 62 QYTSAFGYPPLTKILASFFGKLLGQEMDPLKNVLVTVGAYGALFTAFQALVDEGDEVIII 121
Query: 531 VPFYDCYGPMVSMAGGTPVFVPLRSKPVD-GKRWCSSDWTLDPQELASKFNSKTKAIILN 707
P ++CY PM MAGG PVFV LR P G+ S+DW LDP ELASKF +TK ++LN
Sbjct: 122 EPAFNCYEPMTMMAGGRPVFVSLRLSPAPKGQLGSSNDWQLDPTELASKFTPRTKILVLN 181
Query: 708 TPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP 887
TP+NPLGKVF+++EL+++A LC +HD LC SDEVY+W+VY G +H I PGMWE+T+
Sbjct: 182 TPNNPLGKVFSKKELELVAALCQQHDVLCFSDEVYQWLVYDGHQHISIASLPGMWERTLT 241
Query: 888 *EVLGK 905
GK
Sbjct: 242 IGSAGK 247
Score = 37.4 bits (85), Expect(2) = 2e-76
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGK+F+ TGWK+GW
Sbjct: 241 TIGSAGKSFSATGWKVGW 258
>ref|NP_899043.1| 1-aminocyclopropane-1-carboxylate synthase-like protein 1 [Mus
musculus].
Length = 479
Score = 59.7 bits (143), Expect = 3e-09
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 6/168 (3%)
Frame = +3
Query: 342 SMNQYTRGFGHLSLVKALSCLYGKFYQKQINPTE-EIVVTVGAYGSLFNAIQGFI-EEGD 515
S+ QY GHL L + ++ + FY K P + E VV + SLF+A+ + E G+
Sbjct: 106 SLLQYPDWRGHLFLREEVA-KFLSFYCKSPAPLKPENVVVLNGCASLFSALATVLCEAGE 164
Query: 516 EVIVMVPFYDCYGPMVSMAGGTPVFVPLRSKPVDGKRWCSSDWTLDPQELA----SKFNS 683
+++ P+Y + + G + V G T++ E+ S
Sbjct: 165 ALLIPTPYYGAITQHIYLYGNVRLAYVYLDSKVTGLNTRPFQLTVEKLEMVLQGVSSEGV 224
Query: 684 KTKAIILNTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVY 827
K K +IL P NPLG V++ EELQ ++H I DEVY V+
Sbjct: 225 KVKGLILINPQNPLGDVYSPEELQDFLRFAMRHKLHVIMDEVYMLSVF 272
>ref|NP_666326.1| tyrosine aminotransferase [Mus musculus].
Length = 454
Score = 53.5 bits (127), Expect(2) = 1e-08
Identities = 44/203 (21%), Positives = 86/203 (42%), Gaps = 7/203 (3%)
Frame = +3
Query: 255 TVVNLGQGLPDI-----SPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFY 419
TV++L G P + + PE V + + N Y G+LS + ++ +Y
Sbjct: 72 TVISLSIGDPTVFGNLPTDPE-VTQAMKDALDSGKYNGYAPSIGYLSSREEVA----SYY 126
Query: 420 QKQINPTE--EIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFV 593
P E ++++T G ++ + G +++ P + Y + G
Sbjct: 127 HCPEAPLEAKDVILTSGCSQAIELCLAVLANPGQNILIPRPGFSLYRTLAESMGIEVKLY 186
Query: 594 PLRSKPVDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLC 773
L + W +D ++L S + KT +++N P NP G VF++ LQ I +
Sbjct: 187 NLLPE---------KSWEIDLKQLESLIDEKTACLVVNNPSNPCGSVFSKRHLQKILAVA 237
Query: 774 IKHDTLCISDEVYEWIVYTGKKH 842
+ ++DE+Y +V++ K+
Sbjct: 238 ERQCVPILADEIYGDMVFSDCKY 260
Score = 23.9 bits (50), Expect(2) = 1e-08
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 890 GSAGKTFNVTGWKLGW 937
G K + V GW+LGW
Sbjct: 276 GGLAKRWLVPGWRLGW 291
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,188,068
Number of extensions: 797176
Number of successful extensions: 2070
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2067
Number of HSP's successfully gapped: 7
Length of query: 312
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 211
Effective length of database: 12,583,923
Effective search space: 2655207753
Effective search space used: 2655207753
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007865
(937 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008661.1| kynurenine--oxoglutarate transaminase 3 isof... 450 e-127
Alignment gi|NP_001008662.1| kynurenine--oxoglutarate transaminase 3 isof... 412 e-115
Alignment gi|NP_001116143.1| kynurenine--oxoglutarate transaminase 1 isof... 274 9e-79
Alignment gi|NP_004050.3| kynurenine--oxoglutarate transaminase 1 isoform... 274 9e-79
Alignment gi|NP_001116144.1| kynurenine--oxoglutarate transaminase 1 isof... 204 7e-58
Alignment gi|NP_001120691.1| 1-aminocyclopropane-1-carboxylate synthase-l... 56 4e-08
Alignment gi|NP_115981.1| 1-aminocyclopropane-1-carboxylate synthase-like... 56 4e-08
Alignment gi|NP_000344.1| tyrosine aminotransferase [Homo sapiens]. 51 9e-08
>ref|NP_001008661.1| kynurenine--oxoglutarate transaminase 3 isoform 1 [Homo sapiens].
Length = 454
Score = 450 bits (1158), Expect = e-127
Identities = 221/280 (78%), Positives = 245/280 (87%), Gaps = 2/280 (0%)
Frame = +3
Query: 72 MFLAQRSLCNLG--SKVLRTVSASKILGLSTSTEMSSKFKNAKRIEGLDSNVWVEFTQLA 245
MFLAQRSLC+L +K L+T+S+SKILG STS +MS KF NAKRIEGLDSNVW+EFT+LA
Sbjct: 1 MFLAQRSLCSLSGRAKFLKTISSSKILGFSTSAKMSLKFTNAKRIEGLDSNVWIEFTKLA 60
Query: 246 ADPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFYQK 425
ADP+VVNLGQG PDISPP YVKE+LSKIAA+DS+NQYTRGFGH SLVKALS LY K YQK
Sbjct: 61 ADPSVVNLGQGFPDISPPTYVKEELSKIAAIDSLNQYTRGFGHPSLVKALSYLYEKLYQK 120
Query: 426 QINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFVPLRS 605
QI+ +EI+VTVGAYGSLFN IQ I+EGDEVI++VPFYDCY PMV MAG TPVF+PLRS
Sbjct: 121 QIDSNKEILVTVGAYGSLFNTIQALIDEGDEVILIVPFYDCYEPMVRMAGATPVFIPLRS 180
Query: 606 KPVDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLCIKHD 785
KPV GKRW SSDWTLDPQEL SKFNSKTKAIILNTPHNPLGKV+ REELQVIADLCIK+D
Sbjct: 181 KPVYGKRWSSSDWTLDPQELESKFNSKTKAIILNTPHNPLGKVYNREELQVIADLCIKYD 240
Query: 786 TLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP*EVLGK 905
TLCISDEVYEW+VY+G KH KI FPGMWE+TI GK
Sbjct: 241 TLCISDEVYEWLVYSGNKHLKIATFPGMWERTITIGSAGK 280
>ref|NP_001008662.1| kynurenine--oxoglutarate transaminase 3 isoform 2 [Homo sapiens].
Length = 420
Score = 412 bits (1059), Expect = e-115
Identities = 199/246 (80%), Positives = 217/246 (88%)
Frame = +3
Query: 168 MSSKFKNAKRIEGLDSNVWVEFTQLAADPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSM 347
MS KF NAKRIEGLDSNVW+EFT+LAADP+VVNLGQG PDISPP YVKE+LSKIAA+DS+
Sbjct: 1 MSLKFTNAKRIEGLDSNVWIEFTKLAADPSVVNLGQGFPDISPPTYVKEELSKIAAIDSL 60
Query: 348 NQYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIV 527
NQYTRGFGH SLVKALS LY K YQKQI+ +EI+VTVGAYGSLFN IQ I+EGDEVI+
Sbjct: 61 NQYTRGFGHPSLVKALSYLYEKLYQKQIDSNKEILVTVGAYGSLFNTIQALIDEGDEVIL 120
Query: 528 MVPFYDCYGPMVSMAGGTPVFVPLRSKPVDGKRWCSSDWTLDPQELASKFNSKTKAIILN 707
+VPFYDCY PMV MAG TPVF+PLRSKPV GKRW SSDWTLDPQEL SKFNSKTKAIILN
Sbjct: 121 IVPFYDCYEPMVRMAGATPVFIPLRSKPVYGKRWSSSDWTLDPQELESKFNSKTKAIILN 180
Query: 708 TPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP 887
TPHNPLGKV+ REELQVIADLCIK+DTLCISDEVYEW+VY+G KH KI FPGMWE+TI
Sbjct: 181 TPHNPLGKVYNREELQVIADLCIKYDTLCISDEVYEWLVYSGNKHLKIATFPGMWERTIT 240
Query: 888 *EVLGK 905
GK
Sbjct: 241 IGSAGK 246
>ref|NP_001116143.1| kynurenine--oxoglutarate transaminase 1 isoform a [Homo sapiens].
Length = 422
Score = 274 bits (700), Expect(2) = 9e-79
Identities = 127/246 (51%), Positives = 175/246 (71%), Gaps = 2/246 (0%)
Frame = +3
Query: 174 SKFKNAKRIEGLDSNVWVEFTQLAADPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSM-N 350
+K A+R++G+D N WVEF +LA++ VVNLGQG PD PP++ E + D M N
Sbjct: 2 AKQLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLN 61
Query: 351 QYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVM 530
QYT+ FG+ L K L+ +G+ ++I+P ++VTVG YG+LF A Q ++EGDEVI++
Sbjct: 62 QYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIII 121
Query: 531 VPFYDCYGPMVSMAGGTPVFVPLRSKPV-DGKRWCSSDWTLDPQELASKFNSKTKAIILN 707
PF+DCY PM MAGG PVFV L+ P+ +G+ SS+W LDP ELA KF S+TKA++LN
Sbjct: 122 EPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLN 181
Query: 708 TPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP 887
TP+NPLGKVF+REEL+++A LC +HD +CI+DEVY+W+VY G +H I PGMWE+T+
Sbjct: 182 TPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLT 241
Query: 888 *EVLGK 905
GK
Sbjct: 242 IGSAGK 247
Score = 38.9 bits (89), Expect(2) = 9e-79
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGKTF+ TGWK+GW
Sbjct: 241 TIGSAGKTFSATGWKVGW 258
>ref|NP_004050.3| kynurenine--oxoglutarate transaminase 1 isoform a [Homo sapiens].
Length = 422
Score = 274 bits (700), Expect(2) = 9e-79
Identities = 127/246 (51%), Positives = 175/246 (71%), Gaps = 2/246 (0%)
Frame = +3
Query: 174 SKFKNAKRIEGLDSNVWVEFTQLAADPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSM-N 350
+K A+R++G+D N WVEF +LA++ VVNLGQG PD PP++ E + D M N
Sbjct: 2 AKQLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLN 61
Query: 351 QYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVM 530
QYT+ FG+ L K L+ +G+ ++I+P ++VTVG YG+LF A Q ++EGDEVI++
Sbjct: 62 QYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIII 121
Query: 531 VPFYDCYGPMVSMAGGTPVFVPLRSKPV-DGKRWCSSDWTLDPQELASKFNSKTKAIILN 707
PF+DCY PM MAGG PVFV L+ P+ +G+ SS+W LDP ELA KF S+TKA++LN
Sbjct: 122 EPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLN 181
Query: 708 TPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP 887
TP+NPLGKVF+REEL+++A LC +HD +CI+DEVY+W+VY G +H I PGMWE+T+
Sbjct: 182 TPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLT 241
Query: 888 *EVLGK 905
GK
Sbjct: 242 IGSAGK 247
Score = 38.9 bits (89), Expect(2) = 9e-79
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGKTF+ TGWK+GW
Sbjct: 241 TIGSAGKTFSATGWKVGW 258
>ref|NP_001116144.1| kynurenine--oxoglutarate transaminase 1 isoform b [Homo sapiens].
Length = 372
Score = 204 bits (519), Expect(2) = 7e-58
Identities = 106/246 (43%), Positives = 142/246 (57%), Gaps = 2/246 (0%)
Frame = +3
Query: 174 SKFKNAKRIEGLDSNVWVEFTQLAADPTVVNLGQGLPDISPPEYVKEKLSKIAAVDSM-N 350
+K A+R++G+D N WVEF +LA++ VVNLGQG PD PP++ E + D M N
Sbjct: 2 AKQLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLN 61
Query: 351 QYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFIEEGDEVIVM 530
QYT+ F VI++
Sbjct: 62 QYTKTF--------------------------------------------------VIII 71
Query: 531 VPFYDCYGPMVSMAGGTPVFVPLRSKPV-DGKRWCSSDWTLDPQELASKFNSKTKAIILN 707
PF+DCY PM MAGG PVFV L+ P+ +G+ SS+W LDP ELA KF S+TKA++LN
Sbjct: 72 EPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLN 131
Query: 708 TPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVYTGKKHFKIPPFPGMWEKTIP 887
TP+NPLGKVF+REEL+++A LC +HD +CI+DEVY+W+VY G +H I PGMWE+T+
Sbjct: 132 TPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLT 191
Query: 888 *EVLGK 905
GK
Sbjct: 192 IGSAGK 197
Score = 38.9 bits (89), Expect(2) = 7e-58
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +2
Query: 884 TLGSAGKTFNVTGWKLGW 937
T+GSAGKTF+ TGWK+GW
Sbjct: 191 TIGSAGKTFSATGWKVGW 208
>ref|NP_001120691.1| 1-aminocyclopropane-1-carboxylate synthase-like protein 1 [Homo
sapiens].
Length = 501
Score = 56.2 bits (134), Expect = 4e-08
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 5/167 (2%)
Frame = +3
Query: 342 SMNQYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFI-EEGDE 518
S+ QY GHL L + ++ + + + E VV + SLF+A+ + E G+
Sbjct: 128 SLLQYADWRGHLFLREEVAKFLSFYCKSPVPLRPENVVVLNGGASLFSALATVLCEAGEA 187
Query: 519 VIVMVPFYDCYGPMVSMAGGTPVFVPLRSKPVDGKRWCSSDWTLDPQELASKF----NSK 686
++ P+Y V + G + V G T++ E+A + K
Sbjct: 188 FLIPTPYYGAITQHVCLYGNIRLAYVYLDSEVTGLDTRPFQLTVEKLEMALREAHSEGVK 247
Query: 687 TKAIILNTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVY 827
K +IL +P NPLG V++ EELQ +H I DEVY V+
Sbjct: 248 VKGLILISPQNPLGDVYSPEELQEYLVFAKRHRLHVIVDEVYMLSVF 294
>ref|NP_115981.1| 1-aminocyclopropane-1-carboxylate synthase-like protein 1 [Homo
sapiens].
Length = 501
Score = 56.2 bits (134), Expect = 4e-08
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 5/167 (2%)
Frame = +3
Query: 342 SMNQYTRGFGHLSLVKALSCLYGKFYQKQINPTEEIVVTVGAYGSLFNAIQGFI-EEGDE 518
S+ QY GHL L + ++ + + + E VV + SLF+A+ + E G+
Sbjct: 128 SLLQYADWRGHLFLREEVAKFLSFYCKSPVPLRPENVVVLNGGASLFSALATVLCEAGEA 187
Query: 519 VIVMVPFYDCYGPMVSMAGGTPVFVPLRSKPVDGKRWCSSDWTLDPQELASKF----NSK 686
++ P+Y V + G + V G T++ E+A + K
Sbjct: 188 FLIPTPYYGAITQHVCLYGNIRLAYVYLDSEVTGLDTRPFQLTVEKLEMALREAHSEGVK 247
Query: 687 TKAIILNTPHNPLGKVFTREELQVIADLCIKHDTLCISDEVYEWIVY 827
K +IL +P NPLG V++ EELQ +H I DEVY V+
Sbjct: 248 VKGLILISPQNPLGDVYSPEELQEYLVFAKRHRLHVIVDEVYMLSVF 294
>ref|NP_000344.1| tyrosine aminotransferase [Homo sapiens].
Length = 454
Score = 50.8 bits (120), Expect(2) = 9e-08
Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 7/203 (3%)
Frame = +3
Query: 255 TVVNLGQGLPDI-----SPPEYVKEKLSKIAAVDSMNQYTRGFGHLSLVKALSCLYGKFY 419
T+++L G P + + PE V + + N Y G LS + ++ +Y
Sbjct: 72 TMISLSIGDPTVFGNLPTDPE-VTQAMKDALDSGKYNGYAPSIGFLSSREEIA----SYY 126
Query: 420 QKQINPTE--EIVVTVGAYGSLFNAIQGFIEEGDEVIVMVPFYDCYGPMVSMAGGTPVFV 593
P E ++++T G ++ + G ++V P + Y + G
Sbjct: 127 HCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLY 186
Query: 594 PLRSKPVDGKRWCSSDWTLDPQELASKFNSKTKAIILNTPHNPLGKVFTREELQVIADLC 773
L + W +D ++L + KT +I+N P NP G VF++ LQ I +
Sbjct: 187 NLLPE---------KSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVA 237
Query: 774 IKHDTLCISDEVYEWIVYTGKKH 842
+ ++DE+Y +V++ K+
Sbjct: 238 ARQCVPILADEIYGDMVFSDCKY 260
Score = 23.9 bits (50), Expect(2) = 9e-08
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 890 GSAGKTFNVTGWKLGW 937
G K + V GW+LGW
Sbjct: 276 GGLAKRWLVPGWRLGW 291
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,647,389
Number of extensions: 940267
Number of successful extensions: 2490
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2479
Number of HSP's successfully gapped: 13
Length of query: 312
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,934,836
Effective search space: 3136315560
Effective search space used: 3136315560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007865
(937 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 301 4e-79
>Sscrofa_Chr04
|| Length = 143465943
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 369 ggtcatctatcacttgtgaaagctctgtcctgcctgtatggaaagttttatcaaaagcag 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139702171 ggtcatctatcacttgtgaaagctctgtcctgcctgtatggaaagttttatcaaaagcag 139702230
Query: 429 atcaatcccactgaagaaatcgttgtgacagtgggagcgtatggatccctttttaatgcc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139702231 atcaatcccactgaagaaatcgttgtgacagtgggagcgtatggatccctttttaatgcc 139702290
Query: 489 attcaaggattcatcgaggagggagacgaagt 520
||||||||||||||||||||||||||||||||
Sbjct: 139702291 attcaaggattcatcgaggagggagacgaagt 139702322
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 605 gaaacctgtcgatgggaaaagatggtgcagttctgactggacgttagatcctcaagaact 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139708926 gaaacctgtcgatgggaaaagatggtgcagttctgactggacgttagatcctcaagaact 139708985
Query: 665 ggcgagcaaatttaattccaaaaccaaagctataatactgaatacgcctcataaccctct 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139708986 ggcgagcaaatttaattccaaaaccaaagctataatactgaatacgcctcataaccctct 139709045
Query: 725 tggcaaggtg 734
||||||||||
Sbjct: 139709046 tggcaaggtg 139709055
Score = 242 bits (122), Expect = 3e-61
Identities = 139/147 (94%)
Strand = Plus / Plus
Query: 223 gggtcgaattcacccagttggctgcagaccccaccgttgtcaatcttggccaaggcctcc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139699070 gggtcgaattcacccagttggctgcagaccccaccgttgtcaatcttggccaaggcctcc 139699129
Query: 283 cagacatttnnnnnnntgagtacgtcaaagagaagctgtcgaagatcgcagccgttgaca 342
||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 139699130 cagacatttccccccctgagtacgtcaaggagaagctgtcgaagatcgcagccgttgaca 139699189
Query: 343 gtatgaatcagtacacacggggctttg 369
|||||||||||||||||||||||||||
Sbjct: 139699190 gtatgaatcagtacacacggggctttg 139699216
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 730 aggtgttcaccagggaggaactccaggtaatcgctgacctctgcatcaaacatgacacgc 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139709144 aggtgttcaccagggaggaactccaggtaatcgctgacctctgcatcaaacatgacacgc 139709203
Query: 790 tctgcatcagtgatgaggtctatgaatggatcgtgtacaccgggaagaagcactttaaaa 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139709204 tctgcatcagtgatgaggtctatgaatggatcgtgtacaccgggaagaagcactttaaaa 139709263
Query: 850 ta 851
||
Sbjct: 139709264 ta 139709265
Score = 192 bits (97), Expect = 2e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 69 agcatgtttttggcccagaggagtctctgcaaccttggcagtaaagtcctgagaacagtt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139682018 agcatgtttttggcccagaggagtctctgcaaccttggcagtaaagtcctgagaacagtt 139682077
Query: 129 tctgcttcaaaaatccttggactttctacttctaccg 165
|||||||||||||||||||||||||||||||||||||
Sbjct: 139682078 tctgcttcaaaaatccttggactttctacttctaccg 139682114
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 519 gtcatagtgatggtgcctttctatgactgctacgggcccatggtgagcatggccggagga 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139707806 gtcatagtgatggtgcctttctatgactgctacgggcccatggtgagcatggccggagga 139707865
Query: 579 acgcccgtttttgttcccctgcgatcg 605
|||||||||||||||||||||||||||
Sbjct: 139707866 acgcccgtttttgttcccctgcgatcg 139707892
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 agttctcgcgggacttgggccacggaaagcgaggtgttcgcggaagggatgtgagtggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139676649 agttctcgcgggacttgggccacggaaagcgaggtgttcgcggaagggatgtgagtggcg 139676708
Query: 61 cgtcggtaag 70
||||||||||
Sbjct: 139676709 cgtcggtaag 139676718
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 165 gaaatgtcttcgaaattcaaaaatgcaaaacgaattgaaggccttgacagcaatgtatgg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139698134 gaaatgtcttcgaaattcaaaaatgcaaaacgaattgaaggccttgacagcaatgtatgg 139698193
Score = 97.6 bits (49), Expect = 1e-17
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 856 cttttccgggtatgtgggaaaaaacgataccc-taggaagtgctgggaaaactttcaatg 914
||||||||||||||||||||| ||||||| || |||||||||||||||| ||||||| ||
Sbjct: 139715855 cttttccgggtatgtgggaaagaacgataaccataggaagtgctgggaagactttcagtg 139715914
Query: 915 taactggctggaa 927
|||||||||||||
Sbjct: 139715915 taactggctggaa 139715927
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,706,847
Number of extensions: 120
Number of successful extensions: 120
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 9
Length of query: 937
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 916
Effective length of database: 2,808,413,156
Effective search space: 2572506450896
Effective search space used: 2572506450896
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)