Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007869
(1303 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776568.1| polymeric immunoglobulin receptor precursor [Bo... 520 e-148
Alignment gi|XP_002696258.1| PREDICTED: CD300e antigen-like [Bos taurus]. 59 7e-09
Alignment gi|XP_603093.3| PREDICTED: CD300e antigen-like [Bos taurus]. 59 7e-09
Alignment gi|NP_001179385.1| CMRF35-like molecule 8 [Bos taurus]. 54 4e-07
Alignment gi|XP_002696264.1| PREDICTED: leukocyte membrane antigen-like [... 54 4e-07
Alignment gi|XP_002696260.1| PREDICTED: CD300 molecule-like family member... 51 3e-06
Alignment gi|XP_001256397.2| PREDICTED: immune receptor expressed on myel... 51 3e-06
Alignment gi|NP_001098493.1| CD300 molecule-like family member b [Bos tau... 50 6e-06
Alignment gi|XP_002693941.1| PREDICTED: Fas apoptotic inhibitory molecule... 50 6e-06
Alignment gi|XP_001789011.1| PREDICTED: immune receptor expressed on myel... 50 6e-06
>ref|NP_776568.1| polymeric immunoglobulin receptor precursor [Bos taurus].
Length = 757
Score = 520 bits (1340), Expect = e-148
Identities = 253/385 (65%), Positives = 297/385 (77%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVIL 234
V+CPYNPK+ NS KYWC WEE +NGRCP+LVES GL+ EQYEGRL L EPGNGT+TVIL
Sbjct: 368 VSCPYNPKDANSAKYWCHWEEAQNGRCPRLVESRGLMKEQYEGRLVLLTEPGNGTYTVIL 427
Query: 235 NQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFPCKF 414
NQLT++DAGFYWC+T+ D+RW STVELK+V+GEP+LK+P+NVTAW+GE LKLSCHFPCKF
Sbjct: 428 NQLTDQDAGFYWCVTDGDTRWISTVELKVVQGEPSLKVPKNVTAWLGEPLKLSCHFPCKF 487
Query: 415 YSYQKYWCKWSNTGCRALPSQDEGQSQAFVNCDKKSQIISLNLNPVRKEDEGWYWCGVKD 594
YS++KYWCKWSN GC ALP+Q++G SQAFV+CD+ SQ++SLNL+ V KEDEGWYWCGVK+
Sbjct: 488 YSFEKYWCKWSNRGCSALPTQNDGPSQAFVSCDQNSQVVSLNLDTVTKEDEGWYWCGVKE 547
Query: 595 GLHYGETGAVYVAVEQKAKGSGDXXXXXXXXXXXXXXXXXXXXXTENEVLLDPSLIAEDR 774
G YGET AVYVAVE + KGS +N+ LLDPS A++
Sbjct: 548 GPRYGETAAVYVAVESRVKGS--QGAKQVKAAPAGAAIQSRAGEIQNKALLDPSFFAKE- 604
Query: 775 AVKDGEXXXXXXXXXXXXXXXXXQGGGSKAVVSTLVPLALVMLVGAVTIGVLRARHRKNV 954
+VKD G SKA+VSTLVPLALV++ G V IGV+RARHRKNV
Sbjct: 605 SVKDA---AGGPGAPADPGRPTGYSGSSKALVSTLVPLALVLVAGVVAIGVVRARHRKNV 661
Query: 955 DRISIRSYRTDISMSDFENSRDFGAHDNAGATLDTQETSLGGKDRFTTTTENTMEDKEPK 1134
DRISIRSYRTDISMSDFENSRDF DN GA+ + QETSLGGKD F TTTE+T+E KEPK
Sbjct: 662 DRISIRSYRTDISMSDFENSRDFEGRDNMGASPEAQETSLGGKDEFATTTEDTVESKEPK 721
Query: 1135 RAKRSSKEEADRAFTTFLLQATALS 1209
+AKRSSKEEAD AFTTFLLQA L+
Sbjct: 722 KAKRSSKEEADEAFTTFLLQAKNLA 746
Score = 75.5 bits (184), Expect = 1e-13
Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 9/190 (4%)
Frame = +1
Query: 52 AVTCPYNPKETN--SLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFT 225
++ C Y P N + KYWCR + GRC L+ S G V++ Y GR L P +GTF
Sbjct: 37 SIKCYYPPTSVNRHTRKYWCR--QGAQGRCTTLISSEGYVSDDYVGRANLTNFPESGTFV 94
Query: 226 VILNQLTNRDAGFYWCLTNEDSRWRS-TVELKIVEGEPNLKLPENVTAWVGETLKLSCHF 402
V ++ LT++D+G Y C SR + V L++ + T +G T+ ++C F
Sbjct: 95 VDISHLTHKDSGRYKCGLGISSRGLNFDVSLEVSQDPAQASHAHVYTIDLGRTVTINCPF 154
Query: 403 PCKFYSYQKYWCKWSNTGCRALPSQDEGQSQAFVN------CDKKSQIISLNLNPVRKED 564
+K CK + C + S ++ + + + S+ +N V+ D
Sbjct: 155 TRANSEKRKSLCKKTIQDCFQVVDSTGYVSNSYKDRAHISILGTNTLVFSVVINRVKLSD 214
Query: 565 EGWYWCGVKD 594
G Y C D
Sbjct: 215 AGMYVCQAGD 224
Score = 65.5 bits (158), Expect = 1e-10
Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 8/187 (4%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGT--FTV 228
+ CP+ + K C+ + C Q+V+S+G V+ Y+ R A G T F+V
Sbjct: 150 INCPFTRANSEKRKSLCKKTIQD---CFQVVDSTGYVSNSYKDR-AHISILGTNTLVFSV 205
Query: 229 ILNQLTNRDAGFYWCLTNEDSRW-RSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFP 405
++N++ DAG Y C +D++ + ++L+++E EP L V + ++ C
Sbjct: 206 VINRVKLSDAGMYVCQAGDDAKADKINIDLQVLEPEPEL-----VYGDLRSSVTFDCSLG 260
Query: 406 CKFYSYQKYWCKWSNTG-CRALPSQDEGQSQAF----VNCDKKSQIISLNLNPVRKEDEG 570
+ + K+ C+ N G C + + ++Q F V+ K + + S+++ +RKED G
Sbjct: 261 PEVANVPKFLCQKKNGGACNVVINTLGKKAQDFQGRIVSVPKDNGVFSVHITSLRKEDAG 320
Query: 571 WYWCGVK 591
Y CG +
Sbjct: 321 RYVCGAQ 327
Score = 60.8 bits (146), Expect = 3e-09
Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 13/192 (6%)
Frame = +1
Query: 61 CPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVILNQ 240
C P+ N K+ C ++ G C ++ + G + ++GR+ + NG F+V +
Sbjct: 257 CSLGPEVANVPKFLC--QKKNGGACNVVINTLGKKAQDFQGRIVSVPKD-NGVFSVHITS 313
Query: 241 LTNRDAGFYWCLTNEDSR----WRSTVELKIVEGEPNLKLPENVTAWV-GETLKLSCHFP 405
L DAG Y C + W V E + +V V G ++ +SC +
Sbjct: 314 LRKEDAGRYVCGAQPEGEPQDGWPVQAWQLFVNEETAIPASPSVVKGVRGGSVTVSCPYN 373
Query: 406 CKFYSYQKYWCKW---SNTGCRALPS-----QDEGQSQAFVNCDKKSQIISLNLNPVRKE 561
K + KYWC W N C L +++ + + + + + ++ LN + +
Sbjct: 374 PKDANSAKYWCHWEEAQNGRCPRLVESRGLMKEQYEGRLVLLTEPGNGTYTVILNQLTDQ 433
Query: 562 DEGWYWCGVKDG 597
D G+YWC V DG
Sbjct: 434 DAGFYWC-VTDG 444
>ref|XP_002696258.1| PREDICTED: CD300e antigen-like [Bos taurus].
Length = 328
Score = 59.3 bits (142), Expect = 7e-09
Identities = 32/103 (31%), Positives = 55/103 (53%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVIL 234
V C Y KYWCR + C ++VE+ G E+ GR+++ ++ N TFTVI+
Sbjct: 34 VRCQYEKAYKGHNKYWCRGKYGTV--CRKIVETKGEEKERRNGRVSIRDQADNLTFTVIM 91
Query: 235 NQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNLKLPENVT 363
L+ DAG YWC R ++ L ++ +P++++ +V+
Sbjct: 92 ENLSTNDAGSYWC------RIQTVWILDVLSWDPSVQVEVSVS 128
>ref|XP_603093.3| PREDICTED: CD300e antigen-like [Bos taurus].
Length = 257
Score = 59.3 bits (142), Expect = 7e-09
Identities = 32/103 (31%), Positives = 55/103 (53%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVIL 234
V C Y KYWCR + C ++VE+ G E+ GR+++ ++ N TFTVI+
Sbjct: 34 VRCQYEKAYKGHNKYWCRGKYGTV--CRKIVETKGEEKERRNGRVSIRDQADNLTFTVIM 91
Query: 235 NQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNLKLPENVT 363
L+ DAG YWC R ++ L ++ +P++++ +V+
Sbjct: 92 ENLSTNDAGSYWC------RIQTVWILDVLSWDPSVQVEVSVS 128
>ref|NP_001179385.1| CMRF35-like molecule 8 [Bos taurus].
Length = 299
Score = 53.5 bits (127), Expect = 4e-07
Identities = 29/90 (32%), Positives = 46/90 (51%)
Frame = +1
Query: 52 AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVI 231
+V C Y K N+ KYWC+ N P +V ++ E +G +++ + P N TFTV
Sbjct: 40 SVECRYQEKFRNNNKYWCK---NSCLLSPNIVATTESKTEVTQGHVSIRDHPANLTFTVT 96
Query: 232 LNQLTNRDAGFYWCLTNEDSRWRSTVELKI 321
L L DAG Y C + ++ T E+++
Sbjct: 97 LESLREEDAGTYRCGIDVSYKFDPTFEVEV 126
>ref|XP_002696264.1| PREDICTED: leukocyte membrane antigen-like [Bos taurus].
Length = 299
Score = 53.5 bits (127), Expect = 4e-07
Identities = 29/90 (32%), Positives = 46/90 (51%)
Frame = +1
Query: 52 AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVI 231
+V C Y K N+ KYWC+ N P +V ++ E +G +++ + P N TFTV
Sbjct: 40 SVECRYQEKFRNNNKYWCK---NSCLLSPNIVATTESKTEVTQGHVSIRDHPANLTFTVT 96
Query: 232 LNQLTNRDAGFYWCLTNEDSRWRSTVELKI 321
L L DAG Y C + ++ T E+++
Sbjct: 97 LESLREEDAGTYRCGIDVSYKFDPTFEVEV 126
>ref|XP_002696260.1| PREDICTED: CD300 molecule-like family member d-like [Bos taurus].
Length = 338
Score = 50.8 bits (120), Expect = 3e-06
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVIL 234
V C Y+P+ +K+WCR N C +V+++G E EGR+++ + + +FTV +
Sbjct: 97 VRCQYDPRYERYVKWWCRGAAWNN--CRFVVKTTGSEKEVKEGRVSIRDNQKDRSFTVTM 154
Query: 235 NQLTNRDAGFYWC 273
+L D+ YWC
Sbjct: 155 KELRLDDSDTYWC 167
>ref|XP_001256397.2| PREDICTED: immune receptor expressed on myeloid cells splice-like
[Bos taurus].
Length = 514
Score = 50.8 bits (120), Expect = 3e-06
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVIL 234
V C Y+P+ +K+WCR N C +V+++G E EGR+++ + + +FTV +
Sbjct: 140 VRCQYDPRYERYVKWWCRGAAWNN--CRFVVKTTGSEKEVKEGRVSIRDNQKDRSFTVTM 197
Query: 235 NQLTNRDAGFYWC 273
+L D+ YWC
Sbjct: 198 KELRLDDSDTYWC 210
>ref|NP_001098493.1| CD300 molecule-like family member b [Bos taurus].
Length = 200
Score = 49.7 bits (117), Expect = 6e-06
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +1
Query: 52 AVTCPYNPKETNSLKYWCR---WEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTF 222
+V C Y+ S K+WCR W C LVE+ GL E+ R+++ + N +F
Sbjct: 33 SVQCHYDSGWETSKKWWCRGAWWAS-----CRILVETQGLEREEKGARVSIKDNQRNRSF 87
Query: 223 TVILNQLTNRDAGFYWC 273
TV + +L DA YWC
Sbjct: 88 TVTMQELRPDDADTYWC 104
>ref|XP_002693941.1| PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus].
Length = 419
Score = 49.7 bits (117), Expect = 6e-06
Identities = 26/73 (35%), Positives = 41/73 (56%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVIL 234
+ CP ET+ Y CR + E+GRC +V S+ V E+++ R+ L + P F V++
Sbjct: 35 IECPL--PETHVRIYLCRTID-ESGRCTTVVSSNKYVREEFKHRVTLEQCPDRNLFLVVM 91
Query: 235 NQLTNRDAGFYWC 273
+LT D+G Y C
Sbjct: 92 TELTKNDSGIYAC 104
>ref|XP_001789011.1| PREDICTED: immune receptor expressed on myeloid cells splice-like
[Bos taurus].
Length = 383
Score = 49.7 bits (117), Expect = 6e-06
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVIL 234
V C Y+P + +K+WCR N C +V+++G E EGR+++ + + +FTV +
Sbjct: 118 VQCQYDPGYEHYVKWWCRGAAWNN--CRFVVKTTGSEKEVKEGRVSIRDNQKDRSFTVTM 175
Query: 235 NQLTNRDAGFYWC 273
+L D+ YWC
Sbjct: 176 EELRLDDSDTYWC 188
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,451,024
Number of extensions: 1435122
Number of successful extensions: 8292
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 8088
Number of HSP's successfully gapped: 14
Length of query: 434
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 329
Effective length of database: 14,207,134
Effective search space: 4674147086
Effective search space used: 4674147086
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007869
(1303 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537133.2| PREDICTED: similar to Polymeric-immunoglobulin ... 492 e-139
>ref|XP_537133.2| PREDICTED: similar to Polymeric-immunoglobulin receptor precursor
(Poly-Ig receptor) (PIGR) [Canis familiaris].
Length = 780
Score = 492 bits (1267), Expect = e-139
Identities = 253/424 (59%), Positives = 295/424 (69%), Gaps = 21/424 (4%)
Frame = +1
Query: 1 LIPPXXXXXXXXXXXXXAVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYE 180
+IPP AV CPY PKETNSLKYWCRWE+ +NG C LVES G V EQYE
Sbjct: 350 VIPPSPSVVKGVVGGSVAVFCPYKPKETNSLKYWCRWEDTQNGLCRSLVESDGGVTEQYE 409
Query: 181 GRLALYEEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNLKLPENV 360
GRLAL+EEPGNGT+TVILNQLT DAGFYWCLTN D+ WRS V+L++VEGEP+LK+P NV
Sbjct: 410 GRLALHEEPGNGTYTVILNQLTANDAGFYWCLTNGDTHWRSMVKLQVVEGEPSLKVPNNV 469
Query: 361 TAWVGETLKLSCHFPCKFYSYQKYWCKWSNTGCRALPSQDEGQSQAFVNCDKKSQIISLN 540
TA VGETLKL CHFPCK+YSY+KYWCKWSN C+ LPSQ EG S AFVNCD+ SQI+SL+
Sbjct: 470 TALVGETLKLPCHFPCKYYSYEKYWCKWSNKDCKILPSQGEGPSDAFVNCDQNSQIVSLS 529
Query: 541 LNPVRKEDEGWYWCGVKDGLHYGETGAVYVAVEQKAKGSGDXXXXXXXXXXXXXXXXXXX 720
L+PV KEDEGWYWCGVK+GL YGET AVYVAV++K KGS D
Sbjct: 530 LDPVSKEDEGWYWCGVKNGLRYGETMAVYVAVKEKVKGSQD--VSQVNAAPGEEAVESNV 587
Query: 721 XXTENEVLLDPSLIAEDRAVKDGEXXXXXXXXXXXXXXXXXQGGGSKAVVSTLVPLALVM 900
E++V+ +P L+ ++ AV+ G+ Q G SK ++STLVPL LV+
Sbjct: 588 RKVESKVVQNPRLLVDNVAVETGD-AAGGNRASVDTSSSAGQSGTSKVLLSTLVPLGLVL 646
Query: 901 LVGAVTIGVLRARHRKNVDRISIRSYRTDISMSDFENSRDFGAHDNAGATLDTQETSLGG 1080
VGAV + VLRARHRKNVDRISIRSYRTDISMSDFENSRDFGA+DN GA+ QET+L G
Sbjct: 647 AVGAVVVAVLRARHRKNVDRISIRSYRTDISMSDFENSRDFGANDNMGASQVIQETTLEG 706
Query: 1081 KDR---FTTTTENTMEDKEPKRAKR------------------SSKEEADRAFTTFLLQA 1197
D TTTTE TME +EPK+AKR SSKEEAD A+T FLLQ
Sbjct: 707 HDECSAATTTTEKTMESEEPKKAKRTSEETTSTWVGADVRIGKSSKEEADMAYTAFLLQT 766
Query: 1198 TALS 1209
++
Sbjct: 767 NNMA 770
Score = 77.4 bits (189), Expect = 3e-14
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Frame = +1
Query: 52 AVTCPYNPKETN--SLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFT 225
++TC Y N + KYWCR + GRC L+ S G V++ YEGR + P + TF
Sbjct: 37 SITCYYPATSVNRHTRKYWCR--QGAKGRCTTLISSDGYVSKDYEGRANITNFPDSSTFV 94
Query: 226 VILNQLTNRDAGFYWCLTNEDSRWRS-TVELKIVEGEPNLKLPENVTAWVGETLKLSCHF 402
+ ++ LT D+G Y C +SR S V L + +G L E TA +G T+ ++C F
Sbjct: 95 MNIDHLTQNDSGRYKCGLGINSRGLSFDVSLDVSKGPGPLGDTEVYTADLGGTVTINCPF 154
Query: 403 PCKFYSYQKYWCKWSNTGC 459
+ +K CK ++ GC
Sbjct: 155 KPENSEKKKSVCKKTDKGC 173
Score = 69.3 bits (168), Expect = 8e-12
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNG--TFTV 228
+ CP+ P+ + K C+ + + G C +++S+G VN Y GR+ L E G TF+
Sbjct: 150 INCPFKPENSEKKKSVCK--KTDKG-CVTVIDSTGEVNSDYGGRIEL-EIMGTDQLTFSF 205
Query: 229 ILNQLTNRDAGFYWCLTNEDS-RWRSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFP 405
I+ Q+ DAG Y C ED+ +S V+L++++ EPNL + + ++ C
Sbjct: 206 IIKQVQLSDAGRYVCQIGEDTIGEKSNVDLQVLKPEPNLLYGD-----LRGSVIFDCALG 260
Query: 406 CKFYSYQKYWCKWSNTGC-----RALPSQDEGQSQAFVNCDKKSQIISLNLNPVRKEDEG 570
+ K+ C+ SN L +D + K + S+++ +RKED G
Sbjct: 261 SDVENMAKFLCRMSNEEACDVVINTLGKKDRSFEGRILLIPKNKRSFSVHITNLRKEDAG 320
Query: 571 WYWCG 585
Y CG
Sbjct: 321 NYLCG 325
Score = 66.6 bits (161), Expect = 5e-11
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 18/200 (9%)
Frame = +1
Query: 61 CPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVILNQ 240
C N K+ CR E C ++ + G + +EGR+ L + +F+V +
Sbjct: 257 CALGSDVENMAKFLCRMSNEE--ACDVVINTLGKKDRSFEGRILLIPK-NKRSFSVHITN 313
Query: 241 LTNRDAGFYWCLTNEDSR---------WRSTV-ELKIVEGEPNLKLPENVTAWVGETLKL 390
L DAG Y C + D W+ V E ++ P++ V VG ++ +
Sbjct: 314 LRKEDAGNYLCGAHSDGEPQKGSPIQAWQLFVNEETVIPPSPSV-----VKGVVGGSVAV 368
Query: 391 SCHFPCKFYSYQKYWCKWSNTG---CRALPSQDEGQSQAF-----VNCDKKSQIISLNLN 546
C + K + KYWC+W +T CR+L D G ++ + ++ + + ++ LN
Sbjct: 369 FCPYKPKETNSLKYWCRWEDTQNGLCRSLVESDGGVTEQYEGRLALHEEPGNGTYTVILN 428
Query: 547 PVRKEDEGWYWCGVKDGLHY 606
+ D G+YWC H+
Sbjct: 429 QLTANDAGFYWCLTNGDTHW 448
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,725,225
Number of extensions: 1477416
Number of successful extensions: 8254
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8129
Number of HSP's successfully gapped: 4
Length of query: 434
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 328
Effective length of database: 15,340,888
Effective search space: 5031811264
Effective search space used: 5031811264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007869
(1303 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999324.1| polymeric immunoglobulin receptor [Sus scrofa]. 703 0.0
Alignment gi|XP_003357466.1| PREDICTED: polymeric immunoglobulin receptor... 264 9e-71
Alignment gi|XP_003131286.2| PREDICTED: polymeric immunoglobulin receptor... 78 9e-15
Alignment gi|XP_003357468.1| PREDICTED: high affinity immunoglobulin alph... 52 7e-07
>ref|NP_999324.1| polymeric immunoglobulin receptor [Sus scrofa].
Length = 758
Score = 703 bits (1815), Expect = 0.0
Identities = 347/411 (84%), Positives = 354/411 (86%)
Frame = +1
Query: 1 LIPPXXXXXXXXXXXXXAVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYE 180
+IPP AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYE
Sbjct: 346 MIPPRSSVVRGVVGGSVAVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYE 405
Query: 181 GRLALYEEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNLKLPENV 360
GRLALYEEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNLKLPENV
Sbjct: 406 GRLALYEEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNLKLPENV 465
Query: 361 TAWVGETLKLSCHFPCKFYSYQKYWCKWSNTGCRALPSQDEGQSQAFVNCDKKSQIISLN 540
TAWVGETLKLSCHFPCKFYSYQKYWCKWSNTGCRALPSQDEGQSQAFVNCDKKSQIISLN
Sbjct: 466 TAWVGETLKLSCHFPCKFYSYQKYWCKWSNTGCRALPSQDEGQSQAFVNCDKKSQIISLN 525
Query: 541 LNPVRKEDEGWYWCGVKDGLHYGETGAVYVAVEQKAKGSGDXXXXXXXXXXXXXXXXXXX 720
LNPVRKEDEGWYWCGVKDGLHYGETGAVYVAVEQKAKGSGD
Sbjct: 526 LNPVRKEDEGWYWCGVKDGLHYGETGAVYVAVEQKAKGSGDARLANAAPAPAEDAIEPRA 585
Query: 721 XXTENEVLLDPSLIAEDRAVKDGEXXXXXXXXXXXXXXXXXQGGGSKAVVSTLVPLALVM 900
TENEVLLDPSLIAEDRAVKDGE QGGGSKAVVSTLVPLALVM
Sbjct: 586 RETENEVLLDPSLIAEDRAVKDGEGPASGSGVPAAPGSSVGQGGGSKAVVSTLVPLALVM 645
Query: 901 LVGAVTIGVLRARHRKNVDRISIRSYRTDISMSDFENSRDFGAHDNAGATLDTQETSLGG 1080
LVGAVTIGVLRARHRKNVDRISIRSYRTDISMSDFE+SRDFGAHDNAGATLDTQETSLGG
Sbjct: 646 LVGAVTIGVLRARHRKNVDRISIRSYRTDISMSDFESSRDFGAHDNAGATLDTQETSLGG 705
Query: 1081 KDRFTTTTENTMEDKEPKRAKRSSKEEADRAFTTFLLQATALSPPTKRPPK 1233
KDRFTTTTENTMEDKEPKRAKRSSKEEAD+AFTTFLLQA ++ T+ P+
Sbjct: 706 KDRFTTTTENTMEDKEPKRAKRSSKEEADKAFTTFLLQANSIIAATQNGPR 756
Score = 73.2 bits (178), Expect = 3e-13
Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 11/192 (5%)
Frame = +1
Query: 52 AVTCPYNPKETN--SLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFT 225
++ C Y N S KYWCR GRC L+ S G +++ Y+GR L P NGTF
Sbjct: 37 SIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRANLTNFPENGTFV 94
Query: 226 VILNQLTNRDAGFYWCLTNEDSRWRS-TVELKIVEGEPNLKLPENVTAWVGETLKLSCHF 402
+ + LT D+G Y C SR S V L++ +G + TA +G T+ ++C
Sbjct: 95 MDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLGSTVTINC-- 152
Query: 403 PCKFYSYQKYWCKWSNTG-CRALPSQDEG------QSQAFVNCDKKSQII-SLNLNPVRK 558
P K + QK + G R L G ++A ++ +Q++ S +N ++
Sbjct: 153 PFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQL 212
Query: 559 EDEGWYWCGVKD 594
D G Y C D
Sbjct: 213 RDAGIYICQAGD 224
Score = 54.7 bits (130), Expect = 1e-07
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 15/189 (7%)
Frame = +1
Query: 61 CPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVILNQ 240
C + N K+ C+ + + C ++ + G + +EGR+ L + N F+V +
Sbjct: 253 CALGQEMANVAKFLCQLKNGKT--CNVVINTLGKKAQDFEGRILLTPKE-NSHFSVHITG 309
Query: 241 LTNRDAGFYWCLTNEDSRWRS---TVELKIVEGEPNLKLPEN--VTAWVGETLKLSCHFP 405
L DAG Y C + D + ++ E + P + V VG ++ ++C +
Sbjct: 310 LRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPRSSVVRGVVGGSVAVTCPYN 369
Query: 406 CKFYSYQKYWCKWSNTGCRALPSQDEGQSQAFVNCDKKSQI----------ISLNLNPVR 555
K + KYWC+W P E S VN + ++ ++ LN +
Sbjct: 370 PKETNSLKYWCRWEENENGRCPQLVE--SSGLVNEQYEGRLALYEEPGNGTFTVILNQLT 427
Query: 556 KEDEGWYWC 582
D G+YWC
Sbjct: 428 NRDAGFYWC 436
Score = 48.9 bits (115), Expect = 6e-06
Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Frame = +1
Query: 142 LVESSGLVNEQYEGRLALYEEPGNG-TFTVILNQLTNRDAGFYWCLTNEDSRWRSTVELK 318
+++S+G +N + R L + N F+ ++N++ RDAG Y C ++ S+ +L+
Sbjct: 176 VIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEE---SSADLQ 232
Query: 319 IVEGEPNLKLPENVTAWVGETLKLSCHFPCKFYSYQKYWCKWSN-TGCRALPSQDEGQSQ 495
+++ EP L + + ++ C + + K+ C+ N C + + ++Q
Sbjct: 233 VLKPEPEL-----IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQ 287
Query: 496 AFVN----CDKKSQIISLNLNPVRKEDEGWYWCG 585
F K++ S+++ +RKED G Y CG
Sbjct: 288 DFEGRILLTPKENSHFSVHITGLRKEDAGHYLCG 321
>ref|XP_003357466.1| PREDICTED: polymeric immunoglobulin receptor-like, partial [Sus
scrofa].
Length = 405
Score = 264 bits (674), Expect = 9e-71
Identities = 122/136 (89%), Positives = 123/136 (90%)
Frame = +1
Query: 1 LIPPXXXXXXXXXXXXXAVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYE 180
+IPP AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYE
Sbjct: 216 MIPPRSSVVRGVVGGSVAVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYE 275
Query: 181 GRLALYEEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNLKLPENV 360
GRLALYEEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNLKLPENV
Sbjct: 276 GRLALYEEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNLKLPENV 335
Query: 361 TAWVGETLKLSCHFPC 408
TAWVGETLKLSCHFPC
Sbjct: 336 TAWVGETLKLSCHFPC 351
Score = 54.7 bits (130), Expect = 1e-07
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Frame = +1
Query: 61 CPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVILNQ 240
C + N K+ C+ + + C ++ + G + +EGR+ L + N F+V +
Sbjct: 123 CALGQEMANVAKFLCQLKNGKT--CNVVINTLGKKAQDFEGRILLTPKE-NSHFSVHITG 179
Query: 241 LTNRDAGFYWCLTNEDSRWRSTVELKIVE---GEPNLKLPEN--VTAWVGETLKLSCHFP 405
L DAG Y C + D + ++ + E + P + V VG ++ ++C +
Sbjct: 180 LRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPRSSVVRGVVGGSVAVTCPYN 239
Query: 406 CKFYSYQKYWCKWSNTGCRALPSQDEGQSQAFVNCDKKSQI----------ISLNLNPVR 555
K + KYWC+W P E S VN + ++ ++ LN +
Sbjct: 240 PKETNSLKYWCRWEENENGRCPQLVE--SSGLVNEQYEGRLALYEEPGNGTFTVILNQLT 297
Query: 556 KEDEGWYWC 582
D G+YWC
Sbjct: 298 NRDAGFYWC 306
Score = 48.9 bits (115), Expect = 6e-06
Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Frame = +1
Query: 142 LVESSGLVNEQYEGRLALYEEPGNG-TFTVILNQLTNRDAGFYWCLTNEDSRWRSTVELK 318
+++S+G +N + R L + N F+ ++N++ RDAG Y C ++ S+ +L+
Sbjct: 46 VIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEE---SSADLQ 102
Query: 319 IVEGEPNLKLPENVTAWVGETLKLSCHFPCKFYSYQKYWCKWSN-TGCRALPSQDEGQSQ 495
+++ EP L + + ++ C + + K+ C+ N C + + ++Q
Sbjct: 103 VLKPEPEL-----IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQ 157
Query: 496 AFVN----CDKKSQIISLNLNPVRKEDEGWYWCG 585
F K++ S+++ +RKED G Y CG
Sbjct: 158 DFEGRILLTPKENSHFSVHITGLRKEDAGHYLCG 191
>ref|XP_003131286.2| PREDICTED: polymeric immunoglobulin receptor-like [Sus scrofa].
Length = 581
Score = 78.2 bits (191), Expect = 9e-15
Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 7/187 (3%)
Frame = +1
Query: 52 AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVI 231
AV C Y P + K+WCR + G C LV+++ E R+++ ++ N TFTV
Sbjct: 240 AVQCRYTPGWESHGKWWCRGADW--GNCKILVQTTASEPEVKRDRVSIRDDRENRTFTVT 297
Query: 232 LNQLTNRDAGFYWC-LTNEDSRWRSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFPC 408
+L DAG YWC + + V + + G + P+ V +L + C +
Sbjct: 298 TEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGSSPVTGPKAVRGQERGSLAVQCRYTP 357
Query: 409 KFYSYQKYWCKWSN-TGCRAL-----PSQDEGQSQAFVNCDKKSQIISLNLNPVRKEDEG 570
+ S+ K+WC+ ++ C+ L + + + + D++++ ++ +R +D G
Sbjct: 358 GWESHGKWWCRGADWDSCKILVQTTASEPEVKRDRVSIRDDRENRTFTVTTEELRLDDAG 417
Query: 571 WYWCGVK 591
YWCG++
Sbjct: 418 VYWCGIE 424
Score = 77.0 bits (188), Expect = 2e-14
Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 8/207 (3%)
Frame = +1
Query: 52 AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVI 231
AV C Y P + K+WCR + G C LV+++ E R+++ ++ N TFTV
Sbjct: 32 AVQCRYTPGWESHGKWWCRGADW--GNCKILVQTTASEPEVKRDRVSIRDDRENRTFTVT 89
Query: 232 LNQLTNRDAGFYWC-LTNEDSRWRSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFPC 408
+L DAG YWC + + V + + G P+ V +L + C +
Sbjct: 90 TEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPG------PKAVRGQERGSLAVQCRYTP 143
Query: 409 KFYSYQKYWCKWSNTG-CRAL-----PSQDEGQSQAFVNCDKKSQIISLNLNPVRKEDEG 570
+ S+ K+WC+ ++ G C+ L + + + + D++++ ++ +R +D G
Sbjct: 144 GWESHGKWWCRGADWGNCKILVQTTASEPEVKRDRVSIRDDRENRTFTVTTEELRLDDAG 203
Query: 571 WYWCGV-KDGLHYGETGAVYVAVEQKA 648
YWCG+ + G + E +V V KA
Sbjct: 204 IYWCGIARVGTDHAEQVSVTVDPGPKA 230
Score = 76.3 bits (186), Expect = 4e-14
Identities = 52/201 (25%), Positives = 95/201 (47%), Gaps = 8/201 (3%)
Frame = +1
Query: 52 AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVI 231
AV C Y P + K+WCR + G C LV+++ E R+++ ++ N TFTV
Sbjct: 136 AVQCRYTPGWESHGKWWCRGADW--GNCKILVQTTASEPEVKRDRVSIRDDRENRTFTVT 193
Query: 232 LNQLTNRDAGFYWC-LTNEDSRWRSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFPC 408
+L DAG YWC + + V + + G P+ V +L + C +
Sbjct: 194 TEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPG------PKAVRGQERGSLAVQCRYTP 247
Query: 409 KFYSYQKYWCKWSNTG-CRAL-----PSQDEGQSQAFVNCDKKSQIISLNLNPVRKEDEG 570
+ S+ K+WC+ ++ G C+ L + + + + D++++ ++ +R +D G
Sbjct: 248 GWESHGKWWCRGADWGNCKILVQTTASEPEVKRDRVSIRDDRENRTFTVTTEELRLDDAG 307
Query: 571 WYWCGV-KDGLHYGETGAVYV 630
YWCG+ + G + E +V V
Sbjct: 308 IYWCGIARVGTDHAEQVSVTV 328
>ref|XP_003357468.1| PREDICTED: high affinity immunoglobulin alpha and immunoglobulin mu
Fc receptor-like [Sus scrofa].
Length = 462
Score = 52.0 bits (123), Expect = 7e-07
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 55 VTCPYNPK--ETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTV 228
+ C Y P ++ KYWCR + G C +V ++ Y GR+AL + P G F V
Sbjct: 54 IQCKYGPLLISSHQRKYWCRLNPS-TGLCHTIVSTNRYTRPYYHGRVALEDFPKKGLFVV 112
Query: 229 ILNQLTNRDAGFYWC 273
L QL+ D G+Y C
Sbjct: 113 RLCQLSPEDVGYYRC 127
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,981,692
Number of extensions: 930399
Number of successful extensions: 5237
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5146
Number of HSP's successfully gapped: 11
Length of query: 434
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 332
Effective length of database: 8,804,438
Effective search space: 2923073416
Effective search space used: 2923073416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007869
(1303 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035212.2| polymeric immunoglobulin receptor precursor [Mu... 446 e-125
Alignment gi|NP_742047.1| CMRF35-like molecule 2 precursor [Mus musculus]. 60 3e-09
Alignment gi|NP_954695.1| CMRF35-like molecule 6 precursor [Mus musculus]. 59 8e-09
Alignment gi|NP_001157267.1| triggering receptor expressed on myeloid cel... 52 8e-07
Alignment gi|NP_001029094.1| triggering receptor expressed on myeloid cel... 52 8e-07
Alignment gi|NP_001157268.1| triggering receptor expressed on myeloid cel... 52 8e-07
Alignment gi|NP_766211.2| triggering receptor expressed on myeloid cells-... 52 8e-07
Alignment gi|NP_001154185.1| CMRF35-like molecule 9 isoform 2 [Mus muscul... 52 1e-06
>ref|NP_035212.2| polymeric immunoglobulin receptor precursor [Mus musculus].
Length = 771
Score = 446 bits (1148), Expect = e-125
Identities = 215/403 (53%), Positives = 277/403 (68%), Gaps = 9/403 (2%)
Frame = +1
Query: 52 AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVI 231
A+ CPYNPKE++SLKYWCRWE + NG CP LV + V E+YEGRLAL+++PGNGT+TVI
Sbjct: 367 AIACPYNPKESSSLKYWCRWEGDGNGHCPVLVGTQAQVQEEYEGRLALFDQPGNGTYTVI 426
Query: 232 LNQLTNRDAGFYWCLTNEDSRWRSTVELKIVEG--EPNLKL-PENVTAWVGETLKLSCHF 402
LNQLT DAGFYWCLTN DSRWR+T+EL++ E EPNL++ P+N TA +GET +SCH+
Sbjct: 427 LNQLTTEDAGFYWCLTNGDSRWRTTIELQVAEATREPNLEVTPQNATAVLGETFTVSCHY 486
Query: 403 PCKFYSYQKYWCKWSNTGCRALPSQDEGQSQAFVNCDKKSQIISLNLNPVRKEDEGWYWC 582
PCKFYS +KYWCKWSN GC LPS DEG Q+ V+CD+ SQ++S+ LNPV KEDEGWYWC
Sbjct: 487 PCKFYSQEKYWCKWSNKGCHILPSHDEGARQSSVSCDQSSQLVSMTLNPVSKEDEGWYWC 546
Query: 583 GVKDGLHYGETGAVYVAVEQKAKGSGDXXXXXXXXXXXXXXXXXXXXXT----ENEVLLD 750
GVK G YGET A+Y+AVE++ +GS + EN+ + +
Sbjct: 547 GVKQGQTYGETTAIYIAVEERTRGSSHVNPTDANARAKVALEEEVVDSSISEKENKAIPN 606
Query: 751 PSLIAEDRAVKD--GEXXXXXXXXXXXXXXXXXQGGGSKAVVSTLVPLALVMLVGAVTIG 924
P A +R +++ + + SK + STLVPL LV+ VGA+ +
Sbjct: 607 PGPFANEREIQNVGDQAQENRASGDAGSADGQSRSSSSKVLFSTLVPLGLVLAVGAIAVW 666
Query: 925 VLRARHRKNVDRISIRSYRTDISMSDFENSRDFGAHDNAGATLDTQETSLGGKDRFTTTT 1104
V R RHRKNVDR+SI SYRTDISM+DF+NSRD G +DN GA+ DTQ+T + GKD TTT
Sbjct: 667 VARVRHRKNVDRMSISSYRTDISMADFKNSRDLGGNDNMGASPDTQQTVIEGKDEIVTTT 726
Query: 1105 ENTMEDKEPKRAKRSSKEEADRAFTTFLLQATALSPPTKRPPK 1233
E T E +E K+AKRSSKEEAD A++ FLLQ++ ++ P+
Sbjct: 727 ECTAEPEESKKAKRSSKEEADMAYSAFLLQSSTIAAQVHDGPQ 769
Score = 76.6 bits (187), Expect = 4e-14
Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 9/191 (4%)
Frame = +1
Query: 52 AVTCPYNPKETN--SLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFT 225
++TC Y N + KYWCR + +G C L+ S+G ++++Y GR L P N TF
Sbjct: 37 SITCYYPDTSVNRHTRKYWCR--QGASGMCTTLISSNGYLSKEYSGRANLINFPENNTFV 94
Query: 226 VILNQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNLKLPENV-TAWVGETLKLSCHF 402
+ + QLT D G Y C +R S V P L +V T +G + + C F
Sbjct: 95 INIEQLTQDDTGSYKCGLGTSNRGLSFDVSLEVSQVPELPSDTHVYTKDIGRNVTIECPF 154
Query: 403 PCKFYSYQKYWCKWSNTGCRALPSQDEGQSQAFVNCDK------KSQIISLNLNPVRKED 564
+ +K CK +N C + E + +++ K + +N++ + D
Sbjct: 155 KRENAPSKKSLCKKTNQSCELVIDSTEKVNPSYIGRAKLFMKGTDLTVFYVNISHLTHND 214
Query: 565 EGWYWCGVKDG 597
G Y C +G
Sbjct: 215 AGLYICQAGEG 225
Score = 69.7 bits (169), Expect = 5e-12
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 13/187 (6%)
Frame = +1
Query: 61 CPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVILNQ 240
C + N KY CR + C ++ + G + +EGR+ + + NG F+V++
Sbjct: 257 CDLGREVANEAKYLCRMNKET---CDVIINTLGKRDPDFEGRILITPKDDNGRFSVLITG 313
Query: 241 LTNRDAGFYWCLTNE----DSRWRSTVELKIVEGEPNLKLPENVTAWV-GETLKLSCHFP 405
L DAG Y C + W V E + +V V G ++ ++C +
Sbjct: 314 LRKEDAGHYQCGAHSSGLPQEGWPIQTWQLFVNEESTIPNRRSVVKGVTGGSVAIACPYN 373
Query: 406 CKFYSYQKYWCKWSNTG---CRALPS-----QDEGQSQAFVNCDKKSQIISLNLNPVRKE 561
K S KYWC+W G C L Q+E + + + + ++ LN + E
Sbjct: 374 PKESSSLKYWCRWEGDGNGHCPVLVGTQAQVQEEYEGRLALFDQPGNGTYTVILNQLTTE 433
Query: 562 DEGWYWC 582
D G+YWC
Sbjct: 434 DAGFYWC 440
Score = 60.1 bits (144), Expect = 4e-09
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 7/184 (3%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGT-FTVI 231
+ CP+ + S K C+ N C +++S+ VN Y GR L+ + + T F V
Sbjct: 150 IECPFKRENAPSKKSLCK---KTNQSCELVIDSTEKVNPSYIGRAKLFMKGTDLTVFYVN 206
Query: 232 LNQLTNRDAGFYWCLTNED-SRWRSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFPC 408
++ LT+ DAG Y C E S + V+L+++ EP L + + ++ C
Sbjct: 207 ISHLTHNDAGLYICQAGEGPSADKKNVDLQVLAPEPELLYKD-----LRSSVTFECDLGR 261
Query: 409 KFYSYQKYWCKWSNTGC----RALPSQD-EGQSQAFVNCDKKSQIISLNLNPVRKEDEGW 573
+ + KY C+ + C L +D + + + + + S+ + +RKED G
Sbjct: 262 EVANEAKYLCRMNKETCDVIINTLGKRDPDFEGRILITPKDDNGRFSVLITGLRKEDAGH 321
Query: 574 YWCG 585
Y CG
Sbjct: 322 YQCG 325
>ref|NP_742047.1| CMRF35-like molecule 2 precursor [Mus musculus].
Length = 196
Score = 60.5 bits (145), Expect = 3e-09
Identities = 28/83 (33%), Positives = 41/83 (49%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVIL 234
V C Y+P +KYWCR + C +VE+ G E+ G +++ + N T TVI+
Sbjct: 34 VQCQYSPSYKGYMKYWCRGPHDTT--CKTIVETDGSEKEKRSGPVSIRDHASNSTITVIM 91
Query: 235 NQLTNRDAGFYWCLTNEDSRWRS 303
L+ +AG YWC W S
Sbjct: 92 EDLSEDNAGSYWCKIQTSFIWDS 114
>ref|NP_954695.1| CMRF35-like molecule 6 precursor [Mus musculus].
Length = 229
Score = 58.9 bits (141), Expect = 8e-09
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Frame = +1
Query: 52 AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVI 231
+V+C Y K K WC+W+ N C +V++S E GR+++ + P N TFTV
Sbjct: 40 SVSCQYEKKLKTKKKIWCKWKSNV--LCKDIVKTSAS-EEARNGRVSIRDHPDNLTFTVT 96
Query: 232 LNQLTNRDAGFYWCLTNEDSRWRS--------TVELKIVEGEPNLK 345
L LT DAG Y C+ + + + VE+ +V G+P +K
Sbjct: 97 LENLTLEDAGTYMCMVDIGFFYDAYLQIDKSFKVEVFVVPGKPPVK 142
Score = 55.1 bits (131), Expect = 1e-07
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Frame = +1
Query: 301 STVELKIVEGEPNLKLPENVTAWVGETLKLSCHFPCKFYSYQKYWCKW-SNTGCRAL--- 468
S V L +V G ++ P VT VGE+L +SC + K + +K WCKW SN C+ +
Sbjct: 12 SAVLLSLVPGHFPVRGPSTVTGTVGESLSVSCQYEKKLKTKKKIWCKWKSNVLCKDIVKT 71
Query: 469 -PSQDEGQSQAFVNCDKKSQIISLNLNPVRKEDEGWYWCGVKDGLHY 606
S++ + + + ++ L + ED G Y C V G Y
Sbjct: 72 SASEEARNGRVSIRDHPDNLTFTVTLENLTLEDAGTYMCMVDIGFFY 118
>ref|NP_001157267.1| triggering receptor expressed on myeloid cells-like 4 isoform 3
[Mus musculus].
Length = 264
Score = 52.4 bits (124), Expect = 8e-07
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 52 AVTCPYNPKETNS-LKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTV 228
+V C Y PKE + LK WCR + +C ++V +S E + ++++P G F +
Sbjct: 44 SVQCQYKPKEESYVLKTWCR--QTAPSKCTRVVTTSEPRKAARELQHTIWDDPEAGFFNI 101
Query: 229 ILNQLTNRDAGFYWC 273
+ QLT D+ FYWC
Sbjct: 102 TMTQLTEDDSAFYWC 116
>ref|NP_001029094.1| triggering receptor expressed on myeloid cells-like 4 isoform 1
[Mus musculus].
Length = 259
Score = 52.4 bits (124), Expect = 8e-07
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 52 AVTCPYNPKETNS-LKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTV 228
+V C Y PKE + LK WCR + +C ++V +S E + ++++P G F +
Sbjct: 40 SVQCQYKPKEESYVLKTWCR--QTAPSKCTRVVTTSEPRKAARELQHTIWDDPEAGFFNI 97
Query: 229 ILNQLTNRDAGFYWC 273
+ QLT D+ FYWC
Sbjct: 98 TMTQLTEDDSAFYWC 112
>ref|NP_001157268.1| triggering receptor expressed on myeloid cells-like 4 isoform 4
[Mus musculus].
Length = 255
Score = 52.4 bits (124), Expect = 8e-07
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 52 AVTCPYNPKETNS-LKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTV 228
+V C Y PKE + LK WCR + +C ++V +S E + ++++P G F +
Sbjct: 44 SVQCQYKPKEESYVLKTWCR--QTAPSKCTRVVTTSEPRKAARELQHTIWDDPEAGFFNI 101
Query: 229 ILNQLTNRDAGFYWC 273
+ QLT D+ FYWC
Sbjct: 102 TMTQLTEDDSAFYWC 116
>ref|NP_766211.2| triggering receptor expressed on myeloid cells-like 4 isoform 2
[Mus musculus].
Length = 263
Score = 52.4 bits (124), Expect = 8e-07
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 52 AVTCPYNPKETNS-LKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTV 228
+V C Y PKE + LK WCR + +C ++V +S E + ++++P G F +
Sbjct: 44 SVQCQYKPKEESYVLKTWCR--QTAPSKCTRVVTTSEPRKAARELQHTIWDDPEAGFFNI 101
Query: 229 ILNQLTNRDAGFYWC 273
+ QLT D+ FYWC
Sbjct: 102 TMTQLTEDDSAFYWC 116
>ref|NP_001154185.1| CMRF35-like molecule 9 isoform 2 [Mus musculus].
Length = 371
Score = 52.0 bits (123), Expect = 1e-06
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +1
Query: 52 AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVI 231
++ C Y K KYWCR RC +V ++ E GR+++ + P + TVI
Sbjct: 34 SLRCTYVEKMKEHRKYWCRQGGILVSRCGDIVYANQ-DQEVTRGRMSIRDSPQELSMTVI 92
Query: 232 LNQLTNRDAGFYWCLTNEDSRWRS-TVELKIVEGEPNLKLPENVTAWVGET 381
+ LT +D+G YWC + R S V L + P L P VTA G+T
Sbjct: 93 MRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPASPGLH-PTVVTAKQGKT 142
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,396,065
Number of extensions: 1191030
Number of successful extensions: 6446
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6310
Number of HSP's successfully gapped: 12
Length of query: 434
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 330
Effective length of database: 12,493,815
Effective search space: 4122958950
Effective search space used: 4122958950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007869
(1303 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002635.2| polymeric immunoglobulin receptor precursor [Ho... 514 e-146
Alignment gi|NP_009192.2| CMRF35-like molecule 8 [Homo sapiens]. 63 5e-10
Alignment gi|NP_006669.1| CMRF35-like molecule 6 precursor [Homo sapiens]. 60 4e-09
Alignment gi|NP_852114.2| CMRF35-like molecule 2 precursor [Homo sapiens]. 53 5e-07
Alignment gi|NP_937796.1| trem-like transcript 4 protein precursor [Homo ... 50 4e-06
>ref|NP_002635.2| polymeric immunoglobulin receptor precursor [Homo sapiens].
Length = 764
Score = 514 bits (1323), Expect = e-146
Identities = 250/395 (63%), Positives = 296/395 (74%), Gaps = 1/395 (0%)
Frame = +1
Query: 52 AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVI 231
AV CPYN KE+ S+KYWC WE +NGRCP LV+S G V QYEGRL+L EEPGNGTFTVI
Sbjct: 368 AVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVI 427
Query: 232 LNQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFPCK 411
LNQLT+RDAGFYWCLTN D+ WR+TVE+KI+EGEPNLK+P NVTA +GETLK+ CHFPCK
Sbjct: 428 LNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCK 487
Query: 412 FYSYQKYWCKWSNTGCRALPSQDEGQSQAFVNCDKKSQIISLNLNPVRKEDEGWYWCGVK 591
F SY+KYWCKW+NTGC+ALPSQDEG S+AFVNCD+ S+++SL LN V + DEGWYWCGVK
Sbjct: 488 FSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVK 547
Query: 592 DGLHYGETGAVYVAVEQ-KAKGSGDXXXXXXXXXXXXXXXXXXXXXTENEVLLDPSLIAE 768
G YGET AVYVAVE+ KA GS D EN+ + DP L AE
Sbjct: 548 QGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDPRLFAE 607
Query: 769 DRAVKDGEXXXXXXXXXXXXXXXXXQGGGSKAVVSTLVPLALVMLVGAVTIGVLRARHRK 948
++AV D QGG S+A+VSTLVPL LV+ VGAV +GV RARHRK
Sbjct: 608 EKAVADTRDQADGSRASVDSGSSEEQGGSSRALVSTLVPLGLVLAVGAVAVGVARARHRK 667
Query: 949 NVDRISIRSYRTDISMSDFENSRDFGAHDNAGATLDTQETSLGGKDRFTTTTENTMEDKE 1128
NVDR+SIRSYRTDISMSDFENSR+FGA+DN GA+ TQETSLGGK+ F TTE+T E KE
Sbjct: 668 NVDRVSIRSYRTDISMSDFENSREFGANDNMGASSITQETSLGGKEEFVATTESTTETKE 727
Query: 1129 PKRAKRSSKEEADRAFTTFLLQATALSPPTKRPPK 1233
PK+AKRSSKEEA+ A+ FLLQ++ ++ + P+
Sbjct: 728 PKKAKRSSKEEAEMAYKDFLLQSSTVAAEAQDGPQ 762
Score = 75.5 bits (184), Expect = 1e-13
Identities = 61/195 (31%), Positives = 89/195 (45%), Gaps = 14/195 (7%)
Frame = +1
Query: 52 AVTCPYNPKETN--SLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFT 225
++TC Y P N + KYWCR + G C L+ S G V+ +Y GR L P NGTF
Sbjct: 37 SITCYYPPTSVNRHTRKYWCR--QGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFV 94
Query: 226 VILNQLTNRDAGFYWCLTNEDSRWRS-TVELKIVEGEPNLKLPENVTAWVGETLKLSCHF 402
V + QL+ D+G Y C +SR S V L++ +G L + T +G T+ ++C
Sbjct: 95 VNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC-- 152
Query: 403 PCKFYSYQKYWCKWSNTGCRALPSQDEGQSQAFVNCDKKSQI-----------ISLNLNP 549
P K + QK + G + D S +VN + +I S+ +N
Sbjct: 153 PFKTENAQKRKSLYKQIGLYPVLVID---SSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ 209
Query: 550 VRKEDEGWYWCGVKD 594
+R D G Y C D
Sbjct: 210 LRLSDAGQYLCQAGD 224
Score = 67.0 bits (162), Expect = 4e-11
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 15/189 (7%)
Frame = +1
Query: 61 CPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVILNQ 240
C P+ N K+ CR EN C +V + G +EGR+ L + +G+F+V++
Sbjct: 257 CALGPEVANVAKFLCRQSSGEN--CDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITG 314
Query: 241 LTNRDAGFYWCLTNEDSRWR-----STVELKIVEGEPNLKLPENVTAWVGETLKLSCHFP 405
L DAG Y C + D + + +L + E + P V G ++ + C +
Sbjct: 315 LRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGGSVAVLCPYN 374
Query: 406 CKFYSYQKYWCKW---SNTGCRAL-------PSQDEGQSQAFVNCDKKSQIISLNLNPVR 555
K KYWC W N C L +Q EG+ + + ++ LN +
Sbjct: 375 RKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE--EPGNGTFTVILNQLT 432
Query: 556 KEDEGWYWC 582
D G+YWC
Sbjct: 433 SRDAGFYWC 441
Score = 62.4 bits (150), Expect = 9e-10
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 13/190 (6%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLV-ESSGLVNEQYEGRLAL-YEEPGNGTFTV 228
+ CP+ + K + + G P LV +SSG VN Y GR+ L + G F+V
Sbjct: 150 INCPFKTENAQKRKSLYK----QIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSV 205
Query: 229 ILNQLTNRDAGFYWCLTNEDSRW-RSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFP 405
++NQL DAG Y C +DS + +L++++ EP L V E L+ S F
Sbjct: 206 VINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPEL---------VYEDLRGSVTFH 256
Query: 406 C----KFYSYQKYWCKWSN-TGCRALPSQDEGQSQAF-----VNCDKKSQIISLNLNPVR 555
C + + K+ C+ S+ C + + ++ AF +N K S+ + +R
Sbjct: 257 CALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLR 316
Query: 556 KEDEGWYWCG 585
KED G Y CG
Sbjct: 317 KEDAGRYLCG 326
>ref|NP_009192.2| CMRF35-like molecule 8 [Homo sapiens].
Length = 299
Score = 63.2 bits (152), Expect = 5e-10
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Frame = +1
Query: 52 AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVI 231
+V CPY + KYWCR + C ++VE+ G ++ GR+++ + P N +FTV
Sbjct: 33 SVQCPYEKEHRTLNKYWCR--PPQIFLCDKIVETKGSAGKR-NGRVSIRDSPANLSFTVT 89
Query: 232 LNQLTNRDAGFYWCLTNEDSRWRSTVELKIVEGEPNL------KLPENVTAWVGETLKLS 393
L LT DAG YWC D+ W +VE E ++ P ++TA +T ++
Sbjct: 90 LENLTEEDAGTYWC--GVDTPWLRDFHDPVVEVEVSVFPASTSMTPASITA--AKTSTIT 145
Query: 394 CHFP 405
FP
Sbjct: 146 TAFP 149
>ref|NP_006669.1| CMRF35-like molecule 6 precursor [Homo sapiens].
Length = 224
Score = 60.1 bits (144), Expect = 4e-09
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Frame = +1
Query: 52 AVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVI 231
+V C Y + K+WCR + RC ++VE+ G ++ GR+++ + P N +FTV
Sbjct: 40 SVQCRYEKEHRTLNKFWCR--PPQILRCDKIVETKGSAGKR-NGRVSIRDSPANLSFTVT 96
Query: 232 LNQLTNRDAGFYWCLTNEDSRWRSTVELKIVE--------GEPNLKLPENVTAWVGETLK 387
L LT DAG YWC D+ W IVE G P++ G K
Sbjct: 97 LENLTEEDAGTYWC--GVDTPWLRDFHDPIVEVEVSVFPAGTTTASSPQSSMGTSGPPTK 154
Query: 388 LSCH 399
L H
Sbjct: 155 LPVH 158
>ref|NP_852114.2| CMRF35-like molecule 2 precursor [Homo sapiens].
Length = 205
Score = 53.1 bits (126), Expect = 5e-07
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Frame = +1
Query: 55 VTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVIL 234
V C Y KYWCR + + + C +VE+ G + GR+++ + P FTV +
Sbjct: 34 VWCQYESMYKGYNKYWCRGQYDTS--CESIVETKGEEKVERNGRVSIRDHPEALAFTVTM 91
Query: 235 NQLTNRDAGFYWCLTNE----DSRWRSTVELKIVEGEPNLKLPENVT 363
L DAG YWC DS R +L V P + P T
Sbjct: 92 QNLNEDDAGSYWCKIQTVWVLDSWSRDPSDLVRVYVSPAITTPRRTT 138
>ref|NP_937796.1| trem-like transcript 4 protein precursor [Homo sapiens].
Length = 200
Score = 50.4 bits (119), Expect = 4e-06
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 61 CPYNPKE-TNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVILN 237
C Y+PK K WC ++ RC LV SS + ++++P G F + +
Sbjct: 40 CQYSPKRGPYQPKSWC--QQTSPSRCTLLVTSSKPWTAVQKSHYTIWDKPNAGFFNITMI 97
Query: 238 QLTNRDAGFYWC 273
QLT D+GFYWC
Sbjct: 98 QLTQNDSGFYWC 109
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,559,270
Number of extensions: 1449260
Number of successful extensions: 8548
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8300
Number of HSP's successfully gapped: 8
Length of query: 434
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 329
Effective length of database: 14,835,944
Effective search space: 4881025576
Effective search space used: 4881025576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007869
(1303 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 650 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 650 bits (328), Expect = 0.0
Identities = 328/328 (100%)
Strand = Plus / Plus
Query: 2 tgattcccccaagatcctccgtggtgagaggtgtggtgggaggctccgtggccgtgacct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73892049 tgattcccccaagatcctccgtggtgagaggtgtggtgggaggctccgtggccgtgacct 73892108
Query: 62 gcccctacaacccgaaggaaacaaacagcctgaagtactggtgtcgctgggaagagaatg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73892109 gcccctacaacccgaaggaaacaaacagcctgaagtactggtgtcgctgggaagagaatg 73892168
Query: 122 aaaacggccgctgcccgcagctggtggaaagcagcgggctagtgaacgagcaatacgagg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73892169 aaaacggccgctgcccgcagctggtggaaagcagcgggctagtgaacgagcaatacgagg 73892228
Query: 182 gccggctcgcgctgtacgaggagccaggcaatggcaccttcacggtcatactcaaccagc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73892229 gccggctcgcgctgtacgaggagccaggcaatggcaccttcacggtcatactcaaccagc 73892288
Query: 242 tcaccaaccgggacgccggcttctactggtgtttgaccaacgaggactctcgctggaggt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73892289 tcaccaaccgggacgccggcttctactggtgtttgaccaacgaggactctcgctggaggt 73892348
Query: 302 ccaccgtagagctcaagattgttgaagg 329
||||||||||||||||||||||||||||
Sbjct: 73892349 ccaccgtagagctcaagattgttgaagg 73892376
Score = 648 bits (327), Expect = 0.0
Identities = 327/327 (100%)
Strand = Plus / Plus
Query: 327 aggagaaccgaacctcaagctacccgagaatgtcaccgcttgggtgggagagaccctcaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73892917 aggagaaccgaacctcaagctacccgagaatgtcaccgcttgggtgggagagaccctcaa 73892976
Query: 387 gctctcctgccacttcccatgcaaattctactcctaccagaagtactggtgtaagtggag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73892977 gctctcctgccacttcccatgcaaattctactcctaccagaagtactggtgtaagtggag 73893036
Query: 447 caacaccggctgcagggccctgcccagccaggacgaaggccagagccaggcctttgtgaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73893037 caacaccggctgcagggccctgcccagccaggacgaaggccagagccaggcctttgtgaa 73893096
Query: 507 ctgtgacaagaagagccagatcatctccctgaacctgaaccctgtcagaaaggaggatga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73893097 ctgtgacaagaagagccagatcatctccctgaacctgaaccctgtcagaaaggaggatga 73893156
Query: 567 aggctggtactggtgcggggtgaaggacggactccactatggagagactggggctgtcta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73893157 aggctggtactggtgcggggtgaaggacggactccactatggagagactggggctgtcta 73893216
Query: 627 cgtggcagtggaacagaaggcaaaggg 653
|||||||||||||||||||||||||||
Sbjct: 73893217 cgtggcagtggaacagaaggcaaaggg 73893243
Score = 648 bits (327), Expect = 0.0
Identities = 327/327 (100%)
Strand = Plus / Plus
Query: 327 aggagaaccgaacctcaagctacccgagaatgtcaccgcttgggtgggagagaccctcaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73974459 aggagaaccgaacctcaagctacccgagaatgtcaccgcttgggtgggagagaccctcaa 73974518
Query: 387 gctctcctgccacttcccatgcaaattctactcctaccagaagtactggtgtaagtggag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73974519 gctctcctgccacttcccatgcaaattctactcctaccagaagtactggtgtaagtggag 73974578
Query: 447 caacaccggctgcagggccctgcccagccaggacgaaggccagagccaggcctttgtgaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73974579 caacaccggctgcagggccctgcccagccaggacgaaggccagagccaggcctttgtgaa 73974638
Query: 507 ctgtgacaagaagagccagatcatctccctgaacctgaaccctgtcagaaaggaggatga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73974639 ctgtgacaagaagagccagatcatctccctgaacctgaaccctgtcagaaaggaggatga 73974698
Query: 567 aggctggtactggtgcggggtgaaggacggactccactatggagagactggggctgtcta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73974699 aggctggtactggtgcggggtgaaggacggactccactatggagagactggggctgtcta 73974758
Query: 627 cgtggcagtggaacagaaggcaaaggg 653
|||||||||||||||||||||||||||
Sbjct: 73974759 cgtggcagtggaacagaaggcaaaggg 73974785
Score = 618 bits (312), Expect = e-174
Identities = 319/320 (99%), Gaps = 1/320 (0%)
Strand = Plus / Plus
Query: 2 tgattcccccaagatcctccgtggtgagaggtgtggtgggaggctccgtggccgtgacct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73973593 tgattcccccaagatcctccgtggtgagaggtgtggtgggaggctccgtggccgtgacct 73973652
Query: 62 gcccctacaacccgaaggaaacaaacagcctgaagtactggtgtcgctgggaagagaatg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73973653 gcccctacaacccgaaggaaacaaacagcctgaagtactggtgtcgctgggaagagaatg 73973712
Query: 122 aaaacggccgctgcccgcagctggtggaaagcagcgggctagtgaacgagcaatacgagg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73973713 aaaacggccgctgcccgcagctggtggaaagcagcgggctagtgaacgagcaatacgagg 73973772
Query: 182 gccggctcgcgctgtacgaggagccaggcaatggcaccttcacggtcatactcaaccagc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73973773 gccggctcgcgctgtacgaggagccaggcaatggcaccttcacggtcatactcaaccagc 73973832
Query: 242 tcaccaaccgggacgccggcttctactggtgtttgaccaacgaggactctcgctggaggt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73973833 tcaccaaccgggacgccggcttctactggtgtttgaccaacgaggactctcgctggaggt 73973892
Query: 302 ccaccgtagagctcaagatt 321
|||||||||||||||||||
Sbjct: 73973893 -caccgtagagctcaagatt 73973911
Score = 361 bits (182), Expect = 6e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 652 gggtcgggagatgcccgtctagcaaatgctgctccggctcctgctgaagacgcaatagag 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73894570 gggtcgggagatgcccgtctagcaaatgctgctccggctcctgctgaagacgcaatagag 73894629
Query: 712 ccaagggccagggagactgagaacgaggtcctcctggatcccagcctcattgcagaggac 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73894630 ccaagggccagggagactgagaacgaggtcctcctggatcccagcctcattgcagaggac 73894689
Query: 772 agagcagtgaaggatggtgaaggcccagctagtgggagtggagtacctgcagcccctggc 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73894690 agagcagtgaaggatggtgaaggcccagctagtgggagtggagtacctgcagcccctggc 73894749
Query: 832 ag 833
||
Sbjct: 73894750 ag 73894751
Score = 361 bits (182), Expect = 6e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 652 gggtcgggagatgcccgtctagcaaatgctgctccggctcctgctgaagacgcaatagag 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73976112 gggtcgggagatgcccgtctagcaaatgctgctccggctcctgctgaagacgcaatagag 73976171
Query: 712 ccaagggccagggagactgagaacgaggtcctcctggatcccagcctcattgcagaggac 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73976172 ccaagggccagggagactgagaacgaggtcctcctggatcccagcctcattgcagaggac 73976231
Query: 772 agagcagtgaaggatggtgaaggcccagctagtgggagtggagtacctgcagcccctggc 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73976232 agagcagtgaaggatggtgaaggcccagctagtgggagtggagtacctgcagcccctggc 73976291
Query: 832 ag 833
||
Sbjct: 73976292 ag 73976293
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 955 gaccggatttcaatcagaagctacaggacagacatcagcatgtcagactttgagaactcc 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73895830 gaccggatttcaatcagaagctacaggacagacatcagcatgtcagactttgagaactcc 73895889
Query: 1015 cgggattttggagctcatgacaacgcgggagccactctagacacccaggagacatctctt 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73895890 cgggattttggagctcatgacaacgcgggagccactctagacacccaggagacatctctt 73895949
Query: 1075 ggagggaaagatag 1088
||||||||||||||
Sbjct: 73895950 ggagggaaagatag 73895963
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 955 gaccggatttcaatcagaagctacaggacagacatcagcatgtcagactttgagaactcc 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73977376 gaccggatttcaatcagaagctacaggacagacatcagcatgtcagactttgagaactcc 73977435
Query: 1015 cgggattttggagctcatgacaacgcgggagccactctagacacccaggagacatctctt 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73977436 cgggattttggagctcatgacaacgcgggagccactctagacacccaggagacatctctt 73977495
Query: 1075 ggagggaaagatag 1088
||||||||||||||
Sbjct: 73977496 ggagggaaagatag 73977509
Score = 248 bits (125), Expect = 7e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 831 cagctctgtgggccaaggcgggggctccaaagcggtcgtctccaccctggtgcccctggc 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73895116 cagctctgtgggccaaggcgggggctccaaagcggtcgtctccaccctggtgcccctggc 73895175
Query: 891 gctggtgatgcttgtgggggctgtgaccattggggtgctcagagcccggcacaggaagaa 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73895176 gctggtgatgcttgtgggggctgtgaccattggggtgctcagagcccggcacaggaagaa 73895235
Query: 951 tgtcg 955
|||||
Sbjct: 73895236 tgtcg 73895240
Score = 248 bits (125), Expect = 7e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 831 cagctctgtgggccaaggcgggggctccaaagcggtcgtctccaccctggtgcccctggc 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73976658 cagctctgtgggccaaggcgggggctccaaagcggtcgtctccaccctggtgcccctggc 73976717
Query: 891 gctggtgatgcttgtgggggctgtgaccattggggtgctcagagcccggcacaggaagaa 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73976718 gctggtgatgcttgtgggggctgtgaccattggggtgctcagagcccggcacaggaagaa 73976777
Query: 951 tgtcg 955
|||||
Sbjct: 73976778 tgtcg 73976782
Score = 167 bits (84), Expect = 2e-38
Identities = 143/160 (89%), Gaps = 2/160 (1%)
Strand = Plus / Plus
Query: 1146 gtcatccaaggaggaagccgacagggccttcaccaccttcctgctccagg-caacagcat 1204
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 73897503 gtcatccaaggaggaagccgacaaggccttcaccaccttcctgctccaggccaacagcat 73897562
Query: 1205 tatcgccgcctacca-aacggcccccaaaaaacttagacagagcgctggctgccccgtcc 1263
||||||||| ||| ||||||||| | || | ||||||||||||||||||||||||||
Sbjct: 73897563 tatcgccgctacccagaacggccccagagaagcctagacagagcgctggctgccccgtcc 73897622
Query: 1264 ctgaacatgtggcaatcccctttcaaatcccgttgatcct 1303
|||| |||||||||||| |||| |||| ||||||||||
Sbjct: 73897623 ctgagcatgtggcaatcaccttcagaatcacgttgatcct 73897662
Score = 167 bits (84), Expect = 2e-38
Identities = 143/160 (89%), Gaps = 2/160 (1%)
Strand = Plus / Plus
Query: 1146 gtcatccaaggaggaagccgacagggccttcaccaccttcctgctccagg-caacagcat 1204
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 73979049 gtcatccaaggaggaagccgacaaggccttcaccaccttcctgctccaggccaacagcat 73979108
Query: 1205 tatcgccgcctacca-aacggcccccaaaaaacttagacagagcgctggctgccccgtcc 1263
||||||||| ||| ||||||||| | || | ||||||||||||||||||||||||||
Sbjct: 73979109 tatcgccgctacccagaacggccccagagaagcctagacagagcgctggctgccccgtcc 73979168
Query: 1264 ctgaacatgtggcaatcccctttcaaatcccgttgatcct 1303
|||| |||||||||||| |||| |||| ||||||||||
Sbjct: 73979169 ctgagcatgtggcaatcaccttcagaatcacgttgatcct 73979208
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 1088 ggttcaccaccactaccgagaataccatggaggacaaagaacccaagagggcgaaaagg 1146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73896103 ggttcaccaccactaccgagaataccatggaggacaaagaacccaagagggcgaaaagg 73896161
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 1088 ggttcaccaccactaccgagaataccatggaggacaaagaacccaagagggcgaaaagg 1146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73977649 ggttcaccaccactaccgagaataccatggaggacaaagaacccaagagggcgaaaagg 73977707
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,140,179
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 14
Length of query: 1303
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1282
Effective length of database: 2,808,413,156
Effective search space: 3600385665992
Effective search space used: 3600385665992
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)