Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007871
(2267 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069861.1| probable RNA-binding protein EIF1AD [Bos tau... 253 7e-67
Alignment gi|XP_002705974.1| PREDICTED: barrier to autointegration factor... 194 3e-49
Alignment gi|NP_892033.1| barrier-to-autointegration factor [Bos taurus]. 187 3e-47
Alignment gi|XP_001787260.1| PREDICTED: barrier to autointegration factor... 187 3e-47
Alignment gi|NP_001035649.1| barrier-to-autointegration factor-like prote... 87 6e-17
>ref|NP_001069861.1| probable RNA-binding protein EIF1AD [Bos taurus].
Length = 166
Score = 253 bits (645), Expect = 7e-67
Identities = 124/154 (80%), Positives = 136/154 (88%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEHMVPSD+QQI+RVLRTPGNNLHEVETAQGQ FLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHMVPSDQQQIMRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLC++HVR+LQK+G WP+AFS+V EK +++ NRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNNDRNRQ 120
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPE PAEP+ DLFVNTNRRQYH
Sbjct: 121 TQPEFPAEPQSSGEESSSEDDSDLFVNTNRRQYH 154
>ref|XP_002705974.1| PREDICTED: barrier to autointegration factor 1 [Bos taurus].
Length = 125
Score = 194 bits (493), Expect = 3e-49
Identities = 92/94 (97%), Positives = 94/94 (100%)
Frame = +3
Query: 1311 LSLIKMTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKD 1490
LSLI+MTTSQKHRDFVAEPMGEKPVGSLAGIG+VLGKKLEERGFDKAYVVLGQFLVLKKD
Sbjct: 32 LSLIEMTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKD 91
Query: 1491 EDLFREWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EDLFREWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 92 EDLFREWLKDTCGANAKQSRDCFGCLREWCDAFL 125
>ref|NP_892033.1| barrier-to-autointegration factor [Bos taurus].
Length = 89
Score = 187 bits (476), Expect = 3e-47
Identities = 88/89 (98%), Positives = 89/89 (100%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIG+VLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>ref|XP_001787260.1| PREDICTED: barrier to autointegration factor 1 isoform 1 [Bos
taurus].
Length = 89
Score = 187 bits (476), Expect = 3e-47
Identities = 88/89 (98%), Positives = 89/89 (100%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIG+VLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>ref|NP_001035649.1| barrier-to-autointegration factor-like protein [Bos taurus].
Length = 90
Score = 87.0 bits (214), Expect = 6e-17
Identities = 41/86 (47%), Positives = 57/86 (66%)
Frame = +3
Query: 1335 SQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWL 1514
S + R F++EP+GEK V + GI L L +GF+KAYV+LGQFL++ K E F++WL
Sbjct: 5 SPRLRAFLSEPIGEKDVAWVDGISHELAINLVTKGFNKAYVLLGQFLLMHKREAEFQKWL 64
Query: 1515 KDTCGANAKQSRDCFGCLREWCDAFL 1592
CGA ++R+C CL+EWC FL
Sbjct: 65 ICCCGATEFEARECSNCLKEWCSCFL 90
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 76,554,442
Number of extensions: 2060457
Number of successful extensions: 8588
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8557
Number of HSP's successfully gapped: 5
Length of query: 755
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 645
Effective length of database: 14,041,694
Effective search space: 9056892630
Effective search space used: 9056892630
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007871
(2267 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533226.1| PREDICTED: similar to CG31957-PA isoform 1 [Can... 265 1e-70
Alignment gi|XP_854776.1| PREDICTED: similar to barrier to autointegratio... 187 3e-47
Alignment gi|XP_866141.1| PREDICTED: similar to CG31957-PA isoform 2 [Can... 181 3e-45
Alignment gi|XP_542878.2| PREDICTED: similar to Hypothetical BAF-like pro... 83 1e-15
>ref|XP_533226.1| PREDICTED: similar to CG31957-PA isoform 1 [Canis familiaris].
Length = 166
Score = 265 bits (677), Expect = 1e-70
Identities = 131/154 (85%), Positives = 140/154 (90%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEHMVPSD+QQIVRVLRTPGNNLHEVETAQGQ FLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLC++HVR+LQKEGLWP+AFSEVAEKH++N NRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGLWPEAFSEVAEKHNNNRNRQ 120
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPELPAEP+ DLFVNTNRRQY+
Sbjct: 121 TQPELPAEPQSSGEESSSEDDSDLFVNTNRRQYY 154
>ref|XP_854776.1| PREDICTED: similar to barrier to autointegration factor 1 [Canis
familiaris].
Length = 89
Score = 187 bits (476), Expect = 3e-47
Identities = 88/89 (98%), Positives = 89/89 (100%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIG+VLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>ref|XP_866141.1| PREDICTED: similar to CG31957-PA isoform 2 [Canis familiaris].
Length = 93
Score = 181 bits (459), Expect = 3e-45
Identities = 88/92 (95%), Positives = 91/92 (98%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEHMVPSD+QQIVRVLRTPGNNLHEVETAQGQ FLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNH 346
IWIKRGDFLIVDPIEEGEKVKAEISFVLC++H
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDH 92
>ref|XP_542878.2| PREDICTED: similar to Hypothetical BAF-like protein C20orf179 [Canis
familiaris].
Length = 100
Score = 82.8 bits (203), Expect = 1e-15
Identities = 38/86 (44%), Positives = 57/86 (66%)
Frame = +3
Query: 1335 SQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWL 1514
S + R F++EP+GEK V + GI L L +GF+KAY++LGQFL++ K+E F++WL
Sbjct: 15 SPRLRAFLSEPIGEKDVAWVDGISHELAINLVTKGFNKAYILLGQFLLMHKNEAEFQKWL 74
Query: 1515 KDTCGANAKQSRDCFGCLREWCDAFL 1592
CGA ++++ CL+EWC FL
Sbjct: 75 ICCCGATESEAQESSHCLKEWCSCFL 100
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 79,640,114
Number of extensions: 2074790
Number of successful extensions: 8560
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8520
Number of HSP's successfully gapped: 4
Length of query: 755
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 645
Effective length of database: 15,207,544
Effective search space: 9808865880
Effective search space used: 9808865880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007871
(2267 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353822.1| PREDICTED: probable RNA-binding protein EIF1... 287 2e-77
Alignment gi|XP_003353821.1| PREDICTED: probable RNA-binding protein EIF1... 287 2e-77
Alignment gi|XP_003122557.1| PREDICTED: probable RNA-binding protein EIF1... 287 2e-77
Alignment gi|XP_003122556.1| PREDICTED: probable RNA-binding protein EIF1... 287 2e-77
Alignment gi|XP_003353820.1| PREDICTED: barrier-to-autointegration factor... 189 6e-48
Alignment gi|XP_003353819.1| PREDICTED: barrier-to-autointegration factor... 189 6e-48
Alignment gi|XP_003353818.1| PREDICTED: barrier-to-autointegration factor... 189 6e-48
Alignment gi|XP_003353817.1| PREDICTED: barrier-to-autointegration factor... 189 6e-48
Alignment gi|XP_003353816.1| PREDICTED: barrier-to-autointegration factor... 189 6e-48
Alignment gi|XP_003122562.1| PREDICTED: barrier-to-autointegration factor... 189 6e-48
>ref|XP_003353822.1| PREDICTED: probable RNA-binding protein EIF1AD-like isoform 2 [Sus
scrofa].
Length = 166
Score = 287 bits (734), Expect = 2e-77
Identities = 143/154 (92%), Positives = 143/154 (92%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 120
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPELPAEPRL DLFVNTNRRQYH
Sbjct: 121 TQPELPAEPRLSEDKSSSEDDSDLFVNTNRRQYH 154
>ref|XP_003353821.1| PREDICTED: probable RNA-binding protein EIF1AD-like isoform 1 [Sus
scrofa].
Length = 166
Score = 287 bits (734), Expect = 2e-77
Identities = 143/154 (92%), Positives = 143/154 (92%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 120
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPELPAEPRL DLFVNTNRRQYH
Sbjct: 121 TQPELPAEPRLSEDKSSSEDDSDLFVNTNRRQYH 154
>ref|XP_003122557.1| PREDICTED: probable RNA-binding protein EIF1AD-like isoform 2 [Sus
scrofa].
Length = 166
Score = 287 bits (734), Expect = 2e-77
Identities = 143/154 (92%), Positives = 143/154 (92%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 120
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPELPAEPRL DLFVNTNRRQYH
Sbjct: 121 TQPELPAEPRLSEDKSSSEDDSDLFVNTNRRQYH 154
>ref|XP_003122556.1| PREDICTED: probable RNA-binding protein EIF1AD-like isoform 1 [Sus
scrofa].
Length = 166
Score = 287 bits (734), Expect = 2e-77
Identities = 143/154 (92%), Positives = 143/154 (92%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 120
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPELPAEPRL DLFVNTNRRQYH
Sbjct: 121 TQPELPAEPRLSEDKSSSEDDSDLFVNTNRRQYH 154
>ref|XP_003353820.1| PREDICTED: barrier-to-autointegration factor-like [Sus scrofa].
Length = 89
Score = 189 bits (480), Expect = 6e-48
Identities = 89/89 (100%), Positives = 89/89 (100%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>ref|XP_003353819.1| PREDICTED: barrier-to-autointegration factor-like [Sus scrofa].
Length = 89
Score = 189 bits (480), Expect = 6e-48
Identities = 89/89 (100%), Positives = 89/89 (100%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>ref|XP_003353818.1| PREDICTED: barrier-to-autointegration factor-like [Sus scrofa].
Length = 89
Score = 189 bits (480), Expect = 6e-48
Identities = 89/89 (100%), Positives = 89/89 (100%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>ref|XP_003353817.1| PREDICTED: barrier-to-autointegration factor-like [Sus scrofa].
Length = 89
Score = 189 bits (480), Expect = 6e-48
Identities = 89/89 (100%), Positives = 89/89 (100%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>ref|XP_003353816.1| PREDICTED: barrier-to-autointegration factor-like [Sus scrofa].
Length = 89
Score = 189 bits (480), Expect = 6e-48
Identities = 89/89 (100%), Positives = 89/89 (100%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>ref|XP_003122562.1| PREDICTED: barrier-to-autointegration factor-like isoform 5 [Sus
scrofa].
Length = 89
Score = 189 bits (480), Expect = 6e-48
Identities = 89/89 (100%), Positives = 89/89 (100%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,974,251
Number of extensions: 1414053
Number of successful extensions: 5459
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5441
Number of HSP's successfully gapped: 16
Length of query: 755
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 648
Effective length of database: 8,679,953
Effective search space: 5624609544
Effective search space used: 5624609544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007871
(2267 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081512.1| probable RNA-binding protein EIF1AD [Mus muscul... 251 1e-66
Alignment gi|NP_001033320.1| barrier-to-autointegration factor [Mus muscu... 186 9e-47
Alignment gi|NP_035923.1| barrier-to-autointegration factor [Mus musculus]. 186 9e-47
Alignment gi|NP_997158.1| barrier-to-autointegration factor-like protein ... 81 3e-15
Alignment gi|NP_001038215.1| barrier-to-autointegration factor-like prote... 81 3e-15
>ref|NP_081512.1| probable RNA-binding protein EIF1AD [Mus musculus].
Length = 170
Score = 251 bits (642), Expect = 1e-66
Identities = 126/154 (81%), Positives = 136/154 (88%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQA+KRKHVV+EVLGEHMVPSD QQIV+VLRTPGNNLHEVETAQGQ FLVSMPSKYRKN
Sbjct: 1 MSQASKRKHVVQEVLGEHMVPSDHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLC+NHVR+LQKEG WP+AFSEVAEK +N NR+
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEK-QNNMNRE 119
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
+QPELPAEP+L DLFVNTN RQYH
Sbjct: 120 SQPELPAEPQLSGEGSSSEDDSDLFVNTNHRQYH 153
>ref|NP_001033320.1| barrier-to-autointegration factor [Mus musculus].
Length = 89
Score = 186 bits (471), Expect = 9e-47
Identities = 87/89 (97%), Positives = 88/89 (98%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIGDVL K+LEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLSKRLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>ref|NP_035923.1| barrier-to-autointegration factor [Mus musculus].
Length = 89
Score = 186 bits (471), Expect = 9e-47
Identities = 87/89 (97%), Positives = 88/89 (98%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIGDVL K+LEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLSKRLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>ref|NP_997158.1| barrier-to-autointegration factor-like protein [Mus musculus].
Length = 90
Score = 81.3 bits (199), Expect = 3e-15
Identities = 39/86 (45%), Positives = 55/86 (63%)
Frame = +3
Query: 1335 SQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWL 1514
S + R F++EP+GEK V + GI L L +GF+KAYV+LGQFL++ K+E F+ W+
Sbjct: 5 SPRLRAFLSEPIGEKDVAWVDGISRELAINLVTKGFNKAYVLLGQFLLMHKNEAEFQRWI 64
Query: 1515 KDTCGANAKQSRDCFGCLREWCDAFL 1592
CGA ++R CL+EWC FL
Sbjct: 65 ICCCGATECEARQSSTCLKEWCSCFL 90
>ref|NP_001038215.1| barrier-to-autointegration factor-like protein [Mus musculus].
Length = 90
Score = 81.3 bits (199), Expect = 3e-15
Identities = 39/86 (45%), Positives = 55/86 (63%)
Frame = +3
Query: 1335 SQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWL 1514
S + R F++EP+GEK V + GI L L +GF+KAYV+LGQFL++ K+E F+ W+
Sbjct: 5 SPRLRAFLSEPIGEKDVAWVDGISRELAINLVTKGFNKAYVLLGQFLLMHKNEAEFQRWI 64
Query: 1515 KDTCGANAKQSRDCFGCLREWCDAFL 1592
CGA ++R CL+EWC FL
Sbjct: 65 ICCCGATECEARQSSTCLKEWCSCFL 90
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 65,871,938
Number of extensions: 1673398
Number of successful extensions: 6624
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6588
Number of HSP's successfully gapped: 5
Length of query: 755
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 646
Effective length of database: 12,343,635
Effective search space: 7973988210
Effective search space used: 7973988210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007871
(2267 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001229415.1| probable RNA-binding protein EIF1AD [Homo sa... 261 1e-69
Alignment gi|NP_001229414.1| probable RNA-binding protein EIF1AD [Homo sa... 261 1e-69
Alignment gi|NP_001229413.1| probable RNA-binding protein EIF1AD [Homo sa... 261 1e-69
Alignment gi|NP_001229412.1| probable RNA-binding protein EIF1AD [Homo sa... 261 1e-69
Alignment gi|NP_115701.2| probable RNA-binding protein EIF1AD [Homo sapie... 261 1e-69
Alignment gi|NP_001229411.1| probable RNA-binding protein EIF1AD [Homo sa... 261 1e-69
Alignment gi|NP_001229410.1| probable RNA-binding protein EIF1AD [Homo sa... 261 1e-69
Alignment gi|NP_001137457.1| barrier-to-autointegration factor [Homo sapi... 187 3e-47
Alignment gi|NP_003851.1| barrier-to-autointegration factor [Homo sapiens]. 187 3e-47
Alignment gi|NP_001152967.1| barrier-to-autointegration factor-like prote... 72 2e-12
>ref|NP_001229415.1| probable RNA-binding protein EIF1AD [Homo sapiens].
Length = 165
Score = 261 bits (668), Expect = 1e-69
Identities = 131/154 (85%), Positives = 139/154 (90%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEH+VPSD+QQIVRVLRTPGNNLHEVETAQGQ FLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLC++HVR+LQKEG WP+AFSEVAEKH +N NRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKH-NNRNRQ 119
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPELPAEP+L DLFVNTNRRQYH
Sbjct: 120 TQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYH 153
>ref|NP_001229414.1| probable RNA-binding protein EIF1AD [Homo sapiens].
Length = 165
Score = 261 bits (668), Expect = 1e-69
Identities = 131/154 (85%), Positives = 139/154 (90%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEH+VPSD+QQIVRVLRTPGNNLHEVETAQGQ FLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLC++HVR+LQKEG WP+AFSEVAEKH +N NRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKH-NNRNRQ 119
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPELPAEP+L DLFVNTNRRQYH
Sbjct: 120 TQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYH 153
>ref|NP_001229413.1| probable RNA-binding protein EIF1AD [Homo sapiens].
Length = 165
Score = 261 bits (668), Expect = 1e-69
Identities = 131/154 (85%), Positives = 139/154 (90%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEH+VPSD+QQIVRVLRTPGNNLHEVETAQGQ FLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLC++HVR+LQKEG WP+AFSEVAEKH +N NRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKH-NNRNRQ 119
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPELPAEP+L DLFVNTNRRQYH
Sbjct: 120 TQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYH 153
>ref|NP_001229412.1| probable RNA-binding protein EIF1AD [Homo sapiens].
Length = 165
Score = 261 bits (668), Expect = 1e-69
Identities = 131/154 (85%), Positives = 139/154 (90%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEH+VPSD+QQIVRVLRTPGNNLHEVETAQGQ FLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLC++HVR+LQKEG WP+AFSEVAEKH +N NRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKH-NNRNRQ 119
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPELPAEP+L DLFVNTNRRQYH
Sbjct: 120 TQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYH 153
>ref|NP_115701.2| probable RNA-binding protein EIF1AD [Homo sapiens].
Length = 165
Score = 261 bits (668), Expect = 1e-69
Identities = 131/154 (85%), Positives = 139/154 (90%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEH+VPSD+QQIVRVLRTPGNNLHEVETAQGQ FLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLC++HVR+LQKEG WP+AFSEVAEKH +N NRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKH-NNRNRQ 119
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPELPAEP+L DLFVNTNRRQYH
Sbjct: 120 TQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYH 153
>ref|NP_001229411.1| probable RNA-binding protein EIF1AD [Homo sapiens].
Length = 165
Score = 261 bits (668), Expect = 1e-69
Identities = 131/154 (85%), Positives = 139/154 (90%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEH+VPSD+QQIVRVLRTPGNNLHEVETAQGQ FLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLC++HVR+LQKEG WP+AFSEVAEKH +N NRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKH-NNRNRQ 119
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPELPAEP+L DLFVNTNRRQYH
Sbjct: 120 TQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYH 153
>ref|NP_001229410.1| probable RNA-binding protein EIF1AD [Homo sapiens].
Length = 165
Score = 261 bits (668), Expect = 1e-69
Identities = 131/154 (85%), Positives = 139/154 (90%)
Frame = -3
Query: 621 MSQATKRKHVVKEVLGEHMVPSDRQQIVRVLRTPGNNLHEVETAQGQHFLVSMPSKYRKN 442
MSQATKRKHVVKEVLGEH+VPSD+QQIVRVLRTPGNNLHEVETAQGQ FLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
Query: 441 IWIKRGDFLIVDPIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAFSEVAEKHDDNSNRQ 262
IWIKRGDFLIVDPIEEGEKVKAEISFVLC++HVR+LQKEG WP+AFSEVAEKH +N NRQ
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKH-NNRNRQ 119
Query: 261 TQPELPAEPRLXXXXXXXXXXXDLFVNTNRRQYH 160
TQPELPAEP+L DLFVNTNRRQYH
Sbjct: 120 TQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYH 153
>ref|NP_001137457.1| barrier-to-autointegration factor [Homo sapiens].
Length = 89
Score = 187 bits (476), Expect = 3e-47
Identities = 88/89 (98%), Positives = 89/89 (100%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIG+VLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>ref|NP_003851.1| barrier-to-autointegration factor [Homo sapiens].
Length = 89
Score = 187 bits (476), Expect = 3e-47
Identities = 88/89 (98%), Positives = 89/89 (100%)
Frame = +3
Query: 1326 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 1505
MTTSQKHRDFVAEPMGEKPVGSLAGIG+VLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 1506 EWLKDTCGANAKQSRDCFGCLREWCDAFL 1592
EWLKDTCGANAKQSRDCFGCLREWCDAFL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>ref|NP_001152967.1| barrier-to-autointegration factor-like protein isoform 2 [Homo
sapiens].
Length = 97
Score = 72.0 bits (175), Expect = 2e-12
Identities = 36/86 (41%), Positives = 53/86 (61%)
Frame = +3
Query: 1335 SQKHRDFVAEPMGEKPVGSLAGIGDVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWL 1514
S + R F++EP+GEK V + GI L L +G +KAY++LGQFL++ K+E F+ WL
Sbjct: 12 SPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEFQRWL 71
Query: 1515 KDTCGANAKQSRDCFGCLREWCDAFL 1592
GA +++ CL+EWC FL
Sbjct: 72 ICCFGATECEAQQTSHCLKEWCACFL 97
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 77,984,786
Number of extensions: 2015657
Number of successful extensions: 8193
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 8154
Number of HSP's successfully gapped: 12
Length of query: 755
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 645
Effective length of database: 14,671,124
Effective search space: 9462874980
Effective search space used: 9462874980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007871
(2267 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1294 0.0
Sscrofa_Chr16 230 3e-57
>Sscrofa_Chr02
|| Length = 162569375
Score = 1294 bits (653), Expect = 0.0
Identities = 671/680 (98%)
Strand = Plus / Minus
Query: 632 ctctctggccctcggatcccacgggcgatgcctgaagcggaacgaccccgttctccaggc 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5407292 ctctctggccctcggatcccacgggcgatgcctgaagcggaacgaccccgttctccaggc 5407233
Query: 692 tggacgctgaacacgtctcgtcaacgactcgctttgtagctgagtcaacgagcgcacaga 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5407232 tggacgctgaacacgtctcgtcaacgactcgctttgtagctgagtcaacgagcgcacaga 5407173
Query: 752 aaatggacttgccggcggtcgcgccggtgaagaccccttggactcaagtctcttacaagc 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5407172 aaatggacttgccggcggtcgcgccggtgaagaccccttggactcaagtctcttacaagc 5407113
Query: 812 cggacggcgaggaagacagcacgcgccggcccgaggaaaccccttacttccggcgctctc 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5407112 cggacggcgaggaagacagcacgcgccggcccgaggaaaccccttacttccggcgctctc 5407053
Query: 872 tcggaagcctcccagccacacctccctccttgtccgctcctctaattcttcccaccacca 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5407052 tcggaagcctcccagccacacctccctccttgtccgctcctctaattcttcccaccacca 5406993
Query: 932 agtaggccacgtttaatccttaagttccaaatgtcgcgccgccgagaaataaagttttct 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5406992 agtaggccacgtttaatccttaagttccaaatgtcgcgccgccgagaaataaagttttct 5406933
Query: 992 cctcccaggcctctgctccctcagaccggaaatatttcccgagcagtgagaccacagaaa 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5406932 cctcccaggcctctgctccctcagaccggaaatatttcccgagcagtgagaccacagaaa 5406873
Query: 1052 gctgcccggcttcccgcaaagcaaccggaaaggagcgcctcctaaacgcacgctggcgcg 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5406872 gctgcccggcttcccgcaaagcaaccggaaaggagcgcctcctaaacgcacgctggcgcg 5406813
Query: 1112 ccgccccctcaaccccggcccaatctcaactctatgacttcacgcggctagaggtgccca 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5406812 ccgccccctcaaccccggcccaatctcaactctatgacttcacgcggctagaggtgccca 5406753
Query: 1172 atgtaattttgggnnnnnnnnnaaggcggctcttgaggcgacccggaagcggaagtgggg 1231
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5406752 atgtaattttgggtttttttttaaggcggctcttgaggcgacccggaagcggaagtgggg 5406693
Query: 1232 cgaaagttctagcgggtcgaggcatccgcaggagcggccgggtggcgggagaggccgtta 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5406692 cgaaagttctagcgggtcgaggcatccgcaggagcggccgggtggcgggagaggccgtta 5406633
Query: 1292 cgggaaccggagctgcgggt 1311
||||||||||||||||||||
Sbjct: 5406632 cgggaaccggagctgcgggt 5406613
Score = 1265 bits (638), Expect = 0.0
Identities = 670/681 (98%), Gaps = 2/681 (0%)
Strand = Plus / Minus
Query: 632 ctctctggccctcggatcccacgggcgatgcctgaagcggaacgaccccgttctccaggc 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439406 ctctctggccctcggatcccacgggcgatgcctgaagcggaacgaccccgttctccaggc 5439347
Query: 692 tggacgctgaacacgtctcgtcaacgactcgctttgtagctgagtcaacgagcgcacaga 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439346 tggacgctgaacacgtctcgtcaacgactcgctttgtagctgagtcaacgagcgcacaga 5439287
Query: 752 aaatggacttgccggcggtcgcgccggtgaagaccccttggactcaagtctcttacaagc 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439286 aaatggacttgccggcggtcgcgccggtgaagaccccttggactcaagtctcttacaagc 5439227
Query: 812 cggacggcgaggaagacagcacgcgccggcccgaggaaaccccttacttccggcgctctc 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439226 cggacggcgaggaagacagcacgcgccggcccgaggaaaccccttacttccggcgctctc 5439167
Query: 872 tcggaagcctcccagccacacctccctccttgtccgctcctctaattcttcccaccacca 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439166 tcggaagcctcccagccacacctccctccttgtccgctcctctaattcttcccaccacca 5439107
Query: 932 agtaggccacgtttaatccttaagttccaaatgtcgcgccgccgagaaataaagttttct 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439106 agtaggccacgtttaatccttaagttccaaatgtcgcgccgccgagaaataaagttttct 5439047
Query: 992 cctcccaggcctctgctccctcagaccggaaatatttcccgagcagtgagaccacagaaa 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439046 cctcccaggcctctgctccctcagaccggaaatatttcccgagcagtgagaccacagaaa 5438987
Query: 1052 gctgcccggcttcccgcaaagcaaccggaaaggagcgcctcctaaacgcacgctggcgcg 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5438986 gctgcccggcttcccgcaaagcaaccggaaaggagcgcctcctaaacgcacgctggcgcg 5438927
Query: 1112 ccgccccctcaaccccggcccaatctcaactctatgacttcacgcggctagaggtgccca 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5438926 ccgccccctcaaccccggcccaatctcaactctatgacttcacgcggctagaggtgccca 5438867
Query: 1172 atgtaattttgggnnnnnnnnnaaggcggctc-ttgaggcgacccggaagcggaagtggg 1230
||||||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct: 5438866 atgtaattttgggtttttttttaaggcggctctttgaggcgacccgg-agcggaagtggg 5438808
Query: 1231 gcgaaagttctagcgggtcgaggcatccgcaggagcggccgggtggcgggagaggccgtt 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5438807 gcgaaagttctagcgggtcgaggcatccgcaggagcggccgggtggcgggagaggccgtt 5438748
Query: 1291 acgggaaccggagctgcgggt 1311
|||||||||||||||||||||
Sbjct: 5438747 acgggaaccggagctgcgggt 5438727
Score = 1047 bits (528), Expect = 0.0
Identities = 528/528 (100%)
Strand = Plus / Minus
Query: 1447 aggcctatgtggtccttggccagtttctggtgctcaagaaagatgaagacctcttccggg 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405562 aggcctatgtggtccttggccagtttctggtgctcaagaaagatgaagacctcttccggg 5405503
Query: 1507 aatggctgaaggacacgtgtggcgccaatgccaagcagtcgcgggactgcttcgggtgcc 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405502 aatggctgaaggacacgtgtggcgccaatgccaagcagtcgcgggactgcttcgggtgcc 5405443
Query: 1567 tccgggagtggtgtgatgccttcttgtgatgccctccggggagcccccgaccccaagccc 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405442 tccgggagtggtgtgatgccttcttgtgatgccctccggggagcccccgaccccaagccc 5405383
Query: 1627 cagcattgagtctccagagtttgcagccaagccaggactcctcccccatcctctacaaag 1686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405382 cagcattgagtctccagagtttgcagccaagccaggactcctcccccatcctctacaaag 5405323
Query: 1687 gaaaagattgctgttgtgtgcacttccaacgtactccagcatcttttgggagttctctcc 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405322 gaaaagattgctgttgtgtgcacttccaacgtactccagcatcttttgggagttctctcc 5405263
Query: 1747 cctcaccatgtcaccttttttggaattctcacacttgcatgcatctcccttctcctttcc 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405262 cctcaccatgtcaccttttttggaattctcacacttgcatgcatctcccttctcctttcc 5405203
Query: 1807 ttgccagtttcatgtcagcaattaccagcttttctgagtgaattcctggtcctggccctt 1866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405202 ttgccagtttcatgtcagcaattaccagcttttctgagtgaattcctggtcctggccctt 5405143
Query: 1867 acccctaccctcacttctgatctgttttatgccatgtttggccctctttttggcagaaca 1926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405142 acccctaccctcacttctgatctgttttatgccatgtttggccctctttttggcagaaca 5405083
Query: 1927 gttcctgtccttgtaaagttttctaaatcaataaagtcagtggccttc 1974
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405082 gttcctgtccttgtaaagttttctaaatcaataaagtcagtggccttc 5405035
Score = 1047 bits (528), Expect = 0.0
Identities = 528/528 (100%)
Strand = Plus / Minus
Query: 1447 aggcctatgtggtccttggccagtttctggtgctcaagaaagatgaagacctcttccggg 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437676 aggcctatgtggtccttggccagtttctggtgctcaagaaagatgaagacctcttccggg 5437617
Query: 1507 aatggctgaaggacacgtgtggcgccaatgccaagcagtcgcgggactgcttcgggtgcc 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437616 aatggctgaaggacacgtgtggcgccaatgccaagcagtcgcgggactgcttcgggtgcc 5437557
Query: 1567 tccgggagtggtgtgatgccttcttgtgatgccctccggggagcccccgaccccaagccc 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437556 tccgggagtggtgtgatgccttcttgtgatgccctccggggagcccccgaccccaagccc 5437497
Query: 1627 cagcattgagtctccagagtttgcagccaagccaggactcctcccccatcctctacaaag 1686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437496 cagcattgagtctccagagtttgcagccaagccaggactcctcccccatcctctacaaag 5437437
Query: 1687 gaaaagattgctgttgtgtgcacttccaacgtactccagcatcttttgggagttctctcc 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437436 gaaaagattgctgttgtgtgcacttccaacgtactccagcatcttttgggagttctctcc 5437377
Query: 1747 cctcaccatgtcaccttttttggaattctcacacttgcatgcatctcccttctcctttcc 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437376 cctcaccatgtcaccttttttggaattctcacacttgcatgcatctcccttctcctttcc 5437317
Query: 1807 ttgccagtttcatgtcagcaattaccagcttttctgagtgaattcctggtcctggccctt 1866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437316 ttgccagtttcatgtcagcaattaccagcttttctgagtgaattcctggtcctggccctt 5437257
Query: 1867 acccctaccctcacttctgatctgttttatgccatgtttggccctctttttggcagaaca 1926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437256 acccctaccctcacttctgatctgttttatgccatgtttggccctctttttggcagaaca 5437197
Query: 1927 gttcctgtccttgtaaagttttctaaatcaataaagtcagtggccttc 1974
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437196 gttcctgtccttgtaaagttttctaaatcaataaagtcagtggccttc 5437149
Score = 525 bits (265), Expect = e-146
Identities = 267/268 (99%)
Strand = Plus / Minus
Query: 1 cagagaggggccctgccntgtccccatccagggggaaagatctgcaaagcaccctgggaa 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5409794 cagagaggggccctgccttgtccccatccagggggaaagatctgcaaagcaccctgggaa 5409735
Query: 61 tgtccaagctcagaggatccaagggcgagtctcagccagaggagaagtgggtccggggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5409734 tgtccaagctcagaggatccaagggcgagtctcagccagaggagaagtgggtccggggtc 5409675
Query: 121 tcaggctgcctcctcctcttcgctctcctcctcactctcatgatactgtctgcggttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5409674 tcaggctgcctcctcctcttcgctctcctcctcactctcatgatactgtctgcggttggt 5409615
Query: 181 gttaacaaaaaggtcagaatcatcttcagagctggacttgtcttctgacaaccgtggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5409614 gttaacaaaaaggtcagaatcatcttcagagctggacttgtcttctgacaaccgtggctc 5409555
Query: 241 agctgggagttctggctgagtctgtctg 268
||||||||||||||||||||||||||||
Sbjct: 5409554 agctgggagttctggctgagtctgtctg 5409527
Score = 525 bits (265), Expect = e-146
Identities = 267/268 (99%)
Strand = Plus / Minus
Query: 1 cagagaggggccctgccntgtccccatccagggggaaagatctgcaaagcaccctgggaa 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5441908 cagagaggggccctgccttgtccccatccagggggaaagatctgcaaagcaccctgggaa 5441849
Query: 61 tgtccaagctcagaggatccaagggcgagtctcagccagaggagaagtgggtccggggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5441848 tgtccaagctcagaggatccaagggcgagtctcagccagaggagaagtgggtccggggtc 5441789
Query: 121 tcaggctgcctcctcctcttcgctctcctcctcactctcatgatactgtctgcggttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5441788 tcaggctgcctcctcctcttcgctctcctcctcactctcatgatactgtctgcggttggt 5441729
Query: 181 gttaacaaaaaggtcagaatcatcttcagagctggacttgtcttctgacaaccgtggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5441728 gttaacaaaaaggtcagaatcatcttcagagctggacttgtcttctgacaaccgtggctc 5441669
Query: 241 agctgggagttctggctgagtctgtctg 268
||||||||||||||||||||||||||||
Sbjct: 5441668 agctgggagttctggctgagtctgtctg 5441641
Score = 280 bits (141), Expect = 3e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 1309 ggttaagcttgatcaagatgacaacttcccaaaagcaccgagatttcgtggcagagccca 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405920 ggttaagcttgatcaagatgacaacttcccaaaagcaccgagatttcgtggcagagccca 5405861
Query: 1369 tgggggaaaagccagtgggaagcctggccgggattggtgacgtactgggcaagaagctgg 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405860 tgggggaaaagccagtgggaagcctggccgggattggtgacgtactgggcaagaagctgg 5405801
Query: 1429 aggaaaggggctttgacaagg 1449
|||||||||||||||||||||
Sbjct: 5405800 aggaaaggggctttgacaagg 5405780
Score = 280 bits (141), Expect = 3e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 1309 ggttaagcttgatcaagatgacaacttcccaaaagcaccgagatttcgtggcagagccca 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5438034 ggttaagcttgatcaagatgacaacttcccaaaagcaccgagatttcgtggcagagccca 5437975
Query: 1369 tgggggaaaagccagtgggaagcctggccgggattggtgacgtactgggcaagaagctgg 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5437974 tgggggaaaagccagtgggaagcctggccgggattggtgacgtactgggcaagaagctgg 5437915
Query: 1429 aggaaaggggctttgacaagg 1449
|||||||||||||||||||||
Sbjct: 5437914 aggaaaggggctttgacaagg 5437894
Score = 222 bits (112), Expect = 7e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 316 ccagagcccttccttctgtagagcgcgcacatgatttctgcagagcacaaaggagatctc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5408641 ccagagcccttccttctgtagagcgcgcacatgatttctgcagagcacaaaggagatctc 5408582
Query: 376 ggccttcactttctctccctcttcaatagggtcaacaatgagaaagtcccct 427
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5408581 ggccttcactttctctccctcttcaatagggtcaacaatgagaaagtcccct 5408530
Score = 222 bits (112), Expect = 7e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 316 ccagagcccttccttctgtagagcgcgcacatgatttctgcagagcacaaaggagatctc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440755 ccagagcccttccttctgtagagcgcgcacatgatttctgcagagcacaaaggagatctc 5440696
Query: 376 ggccttcactttctctccctcttcaatagggtcaacaatgagaaagtcccct 427
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440695 ggccttcactttctctccctcttcaatagggtcaacaatgagaaagtcccct 5440644
Score = 220 bits (111), Expect = 3e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 425 cctctcttgatccagatgttcttgcggtatttggagggcatgctcaccaggaagtgctgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5408435 cctctcttgatccagatgttcttgcggtatttggagggcatgctcaccaggaagtgctgc 5408376
Query: 485 ccctgggctgtctccacctcatgcagattgttccctggggtcctgagcacc 535
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5408375 ccctgggctgtctccacctcatgcagattgttccctggggtcctgagcacc 5408325
Score = 220 bits (111), Expect = 3e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 425 cctctcttgatccagatgttcttgcggtatttggagggcatgctcaccaggaagtgctgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440549 cctctcttgatccagatgttcttgcggtatttggagggcatgctcaccaggaagtgctgc 5440490
Query: 485 ccctgggctgtctccacctcatgcagattgttccctggggtcctgagcacc 535
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440489 ccctgggctgtctccacctcatgcagattgttccctggggtcctgagcacc 5440439
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 532 caccctgacgatctgctgccggtcggagggcaccatgtgctcccccagcacctccttcac 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5408232 caccctgacgatctgctgccggtcggagggcaccatgtgctcccccagcacctccttcac 5408173
Query: 592 cacgtgcttcctcttggtggcctgagacatgttgttgggtc 632
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 5408172 cacgtgcttcctcttggtggcctgagacatgttgttgggtc 5408132
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 532 caccctgacgatctgctgccggtcggagggcaccatgtgctcccccagcacctccttcac 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440346 caccctgacgatctgctgccggtcggagggcaccatgtgctcccccagcacctccttcac 5440287
Query: 592 cacgtgcttcctcttggtggcctgagacatgttgttgggtc 632
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440286 cacgtgcttcctcttggtggcctgagacatgttgttgggtc 5440246
Score = 103 bits (52), Expect = 4e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 266 ctgttactgttatcatcgtgtttctcagccacttcggagaaggcctgtggcc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5408862 ctgttactgttatcatcgtgtttctcagccacttcggagaaggcctgtggcc 5408811
Score = 103 bits (52), Expect = 4e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 266 ctgttactgttatcatcgtgtttctcagccacttcggagaaggcctgtggcc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440976 ctgttactgttatcatcgtgtttctcagccacttcggagaaggcctgtggcc 5440925
>Sscrofa_Chr16
|| Length = 86898991
Score = 230 bits (116), Expect = 3e-57
Identities = 198/225 (88%), Gaps = 4/225 (1%)
Strand = Plus / Minus
Query: 1300 ggagctgcgggttaagcttgatcaagatgacaacttcccaaaagcaccgagatttcgtgg 1359
||||||| |||||||| | |||||||||| || |||||||||||| ||||||| ||||
Sbjct: 11305453 ggagctgtgggttaagacttatcaagatgagaatctcccaaaagcacagagattttgtgg 11305394
Query: 1360 cagagcccatgggggaaaagccagtgggaagcctggccgggattggtgacgtactgggca 1419
||||||||||||||||||||||| |||||||||||| ||||||||||| || ||||||
Sbjct: 11305393 cagagcccatgggggaaaagccaatgggaagcctggttgggattggtgaagtcatgggca 11305334
Query: 1420 agaagctggaggaaaggggctttgacaaggcctatgtggtccttggccagtttctggtgc 1479
||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||
Sbjct: 11305333 agaagctggaggaaaggggctttgacaaggcttgtattgtccttggccagtttctggtgt 11305274
Query: 1480 tcaagaaagatgaagacctcttccgggaatggctgaaggacacgt 1524
| |||||||||||||||||||||||||| |||||||||||
Sbjct: 11305273 t----taagatgaagacctcttccgggaatggtggaaggacacgt 11305233
Score = 204 bits (103), Expect = 2e-49
Identities = 197/226 (87%), Gaps = 3/226 (1%)
Strand = Plus / Minus
Query: 1678 tctacaaaggaaaagattgctgttgt--gtgcacttccaacgtactccagcatcttttgg 1735
||||||||||||||||||||||||| |||||| ||||| ||||||||| |||||||
Sbjct: 11305054 tctacaaaggaaaagattgctgttgcacgtgcacctccaa-gtactccagggccttttgg 11304996
Query: 1736 gagttctctcccctcaccatgtcaccttttttggaattctcacacttgcatgcatctccc 1795
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 11304995 gagttctctctcctcaccgctggaccttttttggaattctcacacttgcatgcatctccc 11304936
Query: 1796 ttctcctttccttgccagtttcatgtcagcaattaccagcttttctgagtgaattcctgg 1855
|| |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 11304935 ttttcctttccctgccaattttatgtcagcaattaccagcttttctgagtgaattcctga 11304876
Query: 1856 tcctggcccttacccctaccctcacttctgatctgttttatgccat 1901
|| |||| ||| |||| |||| |||||||||||||||||||
Sbjct: 11304875 ccccatccctcacctataccttcacccctgatctgttttatgccat 11304830
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 59,819,308
Number of extensions: 425
Number of successful extensions: 425
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 422
Number of HSP's successfully gapped: 20
Length of query: 2267
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2245
Effective length of database: 2,808,408,574
Effective search space: 6304877248630
Effective search space used: 6304877248630
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)