Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007875
(1765 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039458.1| dnaJ homolog subfamily C member 11 [Bos taur... 1029 0.0
Alignment gi|NP_776957.2| dnaJ homolog subfamily B member 6 [Bos taurus]. 86 1e-16
Alignment gi|NP_001069384.1| dnaJ homolog subfamily B member 3 [Bos tauru... 85 2e-16
Alignment gi|NP_001093200.1| dnaJ homolog subfamily B member 7 [Bos tauru... 79 1e-14
Alignment gi|NP_001028935.1| dnaJ homolog subfamily B member 1 [Bos tauru... 78 2e-14
Alignment gi|NP_001014959.1| dnaJ homolog subfamily B member 5 [Bos tauru... 77 4e-14
Alignment gi|NP_001039968.1| dnaJ homolog subfamily B member 4 [Bos tauru... 77 4e-14
Alignment gi|NP_001029764.1| dnaJ homolog subfamily B member 2 [Bos tauru... 75 1e-13
Alignment gi|NP_001095590.2| DnaJ (Hsp40) homolog, subfamily A, member 4 ... 72 2e-12
Alignment gi|XP_002697194.1| PREDICTED: DnaJ homolog, subfamily B, member... 71 3e-12
>ref|NP_001039458.1| dnaJ homolog subfamily C member 11 [Bos taurus].
Length = 559
Score = 1029 bits (2661), Expect = 0.0
Identities = 519/559 (92%), Positives = 530/559 (94%)
Frame = +3
Query: 21 MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN 200
MATALSEEELDNEDYYSLLNVRREAS EELKAAYRRLCMLYHPDKHRDPELKSQAERLFN
Sbjct: 1 MATALSEEELDNEDYYSLLNVRREASCEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN 60
Query: 201 LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAXXXXXXXXXXXXXXXXXXX 380
LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPA
Sbjct: 61 LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEFERLQREREERRLQ 120
Query: 381 XXTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTASDTAIL 560
TNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTASDTAIL
Sbjct: 121 QRTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTASDTAIL 180
Query: 561 SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN 740
SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTT+
Sbjct: 181 SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTH 240
Query: 741 CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLG 920
CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWG+QSAMNTSIVRDTKTSHFTVALQLG
Sbjct: 241 CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGVQSAMNTSIVRDTKTSHFTVALQLG 300
Query: 921 IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAVVSVGVPQG 1100
IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGA VS+GVPQG
Sbjct: 301 IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSIGVPQG 360
Query: 1101 VSLKVKLNRASQTYFFPIHLTGQLLPSAVFYATVGPLVLYFAMHRLVIKPYLRAQKEKEL 1280
VSLK+KLNRASQTYFFPIHLT QLLPSAVFYAT GPLVLYFA+HRLVI+PYLRAQKEKEL
Sbjct: 361 VSLKIKLNRASQTYFFPIHLTDQLLPSAVFYATAGPLVLYFALHRLVIRPYLRAQKEKEL 420
Query: 1281 EKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVSDRSKRH 1460
EKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFV+D+SK+
Sbjct: 421 EKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDKSKKS 480
Query: 1461 ERVKAIDVTVPLQCLVRDSKLILTEASXAGLPGFYDPCVGEEKNLKVLYQFRGVLHXVMA 1640
E+VK IDVTVPLQCLV+DSKLILTEAS AGLPGFYDPCVGEEKNLKVLYQFRGVLH VMA
Sbjct: 481 EKVKVIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMA 540
Query: 1641 LDSEALRIPKQSHRIDTDG 1697
LDSEALRIPKQSHRIDTDG
Sbjct: 541 LDSEALRIPKQSHRIDTDG 559
>ref|NP_776957.2| dnaJ homolog subfamily B member 6 [Bos taurus].
Length = 242
Score = 85.5 bits (210), Expect = 1e-16
Identities = 43/77 (55%), Positives = 55/77 (71%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS+E++K AYR+L + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL G
Sbjct: 61 KRDIYDRYGKEGLNGGG 77
>ref|NP_001069384.1| dnaJ homolog subfamily B member 3 [Bos taurus].
Length = 244
Score = 84.7 bits (208), Expect = 2e-16
Identities = 43/77 (55%), Positives = 55/77 (71%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V R+ASSE +K AYR+L + +HPDK+ PE K +AER F V QAYEVLSD +
Sbjct: 3 DYYEVLGVPRQASSEAIKKAYRKLALKWHPDKN--PENKEEAERRFKQVAQAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R +YD YG+ G+E G
Sbjct: 61 KRDVYDRYGEAGVEGGG 77
>ref|NP_001093200.1| dnaJ homolog subfamily B member 7 [Bos taurus].
Length = 304
Score = 79.3 bits (194), Expect = 1e-14
Identities = 40/77 (51%), Positives = 52/77 (67%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L + R AS E++K AYR++ + +HPDK+ PE K +AER F V +AYEVLS +
Sbjct: 3 DYYQVLGLERHASPEDIKKAYRKVALKWHPDKN--PENKEEAERKFKEVAEAYEVLSHDE 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL G
Sbjct: 61 KRDIYDKYGKEGLNGGG 77
>ref|NP_001028935.1| dnaJ homolog subfamily B member 1 [Bos taurus].
Length = 340
Score = 78.2 bits (191), Expect = 2e-14
Identities = 38/78 (48%), Positives = 52/78 (66%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY L + R AS EE+K AYRR + YHPDK+++P AE F + +AY+VLSDP
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP----GAEEKFKEIAEAYDVLSDP 58
Query: 237 QTRAIYDIYGKRGLEMEG 290
+ R I+D YG+ GL+ G
Sbjct: 59 RKREIFDRYGEEGLKGSG 76
>ref|NP_001014959.1| dnaJ homolog subfamily B member 5 [Bos taurus].
Length = 348
Score = 77.4 bits (189), Expect = 4e-14
Identities = 34/78 (43%), Positives = 53/78 (67%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY +L + A+ +E+K AYR++ + YHPDK+++P AE F + +AY+VLSDP
Sbjct: 3 KDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEP----NAEEKFKEIAEAYDVLSDP 58
Query: 237 QTRAIYDIYGKRGLEMEG 290
+ R +YD YG+ GL+ G
Sbjct: 59 KKRGLYDQYGEEGLKTGG 76
>ref|NP_001039968.1| dnaJ homolog subfamily B member 4 [Bos taurus].
Length = 337
Score = 77.4 bits (189), Expect = 4e-14
Identities = 36/75 (48%), Positives = 52/75 (69%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY +L + + AS E++K AYR+ + +HPDK++ P QAE F V +AYEVLSDP
Sbjct: 3 KDYYCILGIEKGASDEDIKKAYRKQALRFHPDKNKSP----QAEERFKEVAEAYEVLSDP 58
Query: 237 QTRAIYDIYGKRGLE 281
+ R IYD +G+ GL+
Sbjct: 59 KKREIYDQFGEEGLK 73
>ref|NP_001029764.1| dnaJ homolog subfamily B member 2 [Bos taurus].
Length = 278
Score = 75.5 bits (184), Expect = 1e-13
Identities = 37/76 (48%), Positives = 52/76 (68%)
Frame = +3
Query: 63 YYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQT 242
YY +L+V R AS++++K AYR+ + +HPDK+ P+ K AE+ F V +AYEVLSD
Sbjct: 4 YYEILDVPRSASADDIKKAYRKKALQWHPDKN--PDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 243 RAIYDIYGKRGLEMEG 290
R IYD+YG+ GL G
Sbjct: 62 REIYDLYGREGLTGAG 77
>ref|NP_001095590.2| DnaJ (Hsp40) homolog, subfamily A, member 4 [Bos taurus].
Length = 426
Score = 71.6 bits (174), Expect = 2e-12
Identities = 37/76 (48%), Positives = 49/76 (64%)
Frame = +3
Query: 63 YYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQT 242
YY +L V+ AS EE+K AYR+L + YHPDK+ D K F L+ QAYEVLSDP+
Sbjct: 36 YYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEK------FKLISQAYEVLSDPKK 89
Query: 243 RAIYDIYGKRGLEMEG 290
R IYD G++ ++ G
Sbjct: 90 RDIYDQGGEQAIKEGG 105
>ref|XP_002697194.1| PREDICTED: DnaJ homolog, subfamily B, member 8-like [Bos taurus].
Length = 231
Score = 71.2 bits (173), Expect = 3e-12
Identities = 35/77 (45%), Positives = 52/77 (67%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
+YY +L V+ AS E++K AYR+L + +HPDK +P+ K +AE+ F V +AYEVLSD +
Sbjct: 3 NYYEVLGVQASASPEDIKKAYRKLALRWHPDK--NPDNKEEAEKKFKQVSEAYEVLSDSK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R++YD G G + G
Sbjct: 61 KRSLYDRAGCDGWRLGG 77
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,929,248
Number of extensions: 1761218
Number of successful extensions: 7490
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 7381
Number of HSP's successfully gapped: 46
Length of query: 588
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 480
Effective length of database: 14,107,870
Effective search space: 6771777600
Effective search space used: 6771777600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007875
(1765 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849469.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 1032 0.0
Alignment gi|XP_858801.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 910 0.0
Alignment gi|XP_858761.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 848 0.0
Alignment gi|XP_858724.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 597 e-170
Alignment gi|XP_852935.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 86 1e-16
Alignment gi|XP_861662.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 86 1e-16
Alignment gi|XP_861635.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 86 1e-16
Alignment gi|XP_850522.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 86 1e-16
Alignment gi|XP_546188.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 86 1e-16
Alignment gi|XP_852900.1| PREDICTED: similar to DnaJ homolog subfamily B ... 77 4e-14
>ref|XP_849469.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 11
isoform 1 [Canis familiaris].
Length = 559
Score = 1032 bits (2669), Expect = 0.0
Identities = 522/559 (93%), Positives = 532/559 (95%)
Frame = +3
Query: 21 MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN 200
MATAL+EEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN
Sbjct: 1 MATALNEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN 60
Query: 201 LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAXXXXXXXXXXXXXXXXXXX 380
LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPA
Sbjct: 61 LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEFERLQREREERRLQ 120
Query: 381 XXTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTASDTAIL 560
TNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTA+DTAIL
Sbjct: 121 QRTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTATDTAIL 180
Query: 561 SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN 740
SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN
Sbjct: 181 SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN 240
Query: 741 CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLG 920
CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLG
Sbjct: 241 CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLG 300
Query: 921 IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAVVSVGVPQG 1100
IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGA VSVGVPQG
Sbjct: 301 IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVGVPQG 360
Query: 1101 VSLKVKLNRASQTYFFPIHLTGQLLPSAVFYATVGPLVLYFAMHRLVIKPYLRAQKEKEL 1280
VSLKVKLNRASQTYFFPIHLT QLLPSAVFYATVGPLV+YFA+HRLVIKPYLRAQKEKEL
Sbjct: 361 VSLKVKLNRASQTYFFPIHLTDQLLPSAVFYATVGPLVVYFALHRLVIKPYLRAQKEKEL 420
Query: 1281 EKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVSDRSKRH 1460
EKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFV+D+SK+
Sbjct: 421 EKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDKSKKS 480
Query: 1461 ERVKAIDVTVPLQCLVRDSKLILTEASXAGLPGFYDPCVGEEKNLKVLYQFRGVLHXVMA 1640
E+VK IDVTVPLQCLV+DSKLILTEAS AGLPGFYDPCVGEEKNLKVLYQFRGVLH VMA
Sbjct: 481 EKVKVIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMA 540
Query: 1641 LDSEALRIPKQSHRIDTDG 1697
LD+EALRIPKQSHRIDTDG
Sbjct: 541 LDNEALRIPKQSHRIDTDG 559
>ref|XP_858801.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 11
isoform 4 [Canis familiaris].
Length = 507
Score = 910 bits (2351), Expect = 0.0
Identities = 473/559 (84%), Positives = 481/559 (86%)
Frame = +3
Query: 21 MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN 200
MATAL+EEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN
Sbjct: 1 MATALNEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN 60
Query: 201 LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAXXXXXXXXXXXXXXXXXXX 380
LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPA
Sbjct: 61 LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEFERLQREREERRLQ 120
Query: 381 XXTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTASDTAIL 560
TNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTA+DTAIL
Sbjct: 121 QRTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTATDTAIL 180
Query: 561 SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN 740
SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN
Sbjct: 181 SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN 240
Query: 741 CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLG 920
CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLG
Sbjct: 241 CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLG 300
Query: 921 IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAVVSVGVPQG 1100
IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGA VSVGVPQG
Sbjct: 301 IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVGVPQG 360
Query: 1101 VSLKVKLNRASQTYFFPIHLTGQLLPSAVFYATVGPLVLYFAMHRLVIKPYLRAQKEKEL 1280
VSLKVK EL
Sbjct: 361 VSLKVK----------------------------------------------------EL 368
Query: 1281 EKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVSDRSKRH 1460
EKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFV+D+SK+
Sbjct: 369 EKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDKSKKS 428
Query: 1461 ERVKAIDVTVPLQCLVRDSKLILTEASXAGLPGFYDPCVGEEKNLKVLYQFRGVLHXVMA 1640
E+VK IDVTVPLQCLV+DSKLILTEAS AGLPGFYDPCVGEEKNLKVLYQFRGVLH VMA
Sbjct: 429 EKVKVIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMA 488
Query: 1641 LDSEALRIPKQSHRIDTDG 1697
LD+EALRIPKQSHRIDTDG
Sbjct: 489 LDNEALRIPKQSHRIDTDG 507
>ref|XP_858761.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 11
isoform 3 [Canis familiaris].
Length = 469
Score = 848 bits (2192), Expect = 0.0
Identities = 431/468 (92%), Positives = 441/468 (94%)
Frame = +3
Query: 294 EVVERRRTPAXXXXXXXXXXXXXXXXXXXXXTNPKGTISVGIDATDLFDRYEEEYEDVSG 473
+VVERRRTPA TNPKGTISVGIDATDLFDRYEEEYEDVSG
Sbjct: 2 KVVERRRTPAEIREEFERLQREREERRLQQRTNPKGTISVGIDATDLFDRYEEEYEDVSG 61
Query: 474 SGFPQIEINKMHISQSIEAPLTASDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGEL 653
SGFPQIEINKMHISQSIEAPLTA+DTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGEL
Sbjct: 62 SGFPQIEINKMHISQSIEAPLTATDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGEL 121
Query: 654 EFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQ 833
EFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQ
Sbjct: 122 EFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQ 181
Query: 834 WRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFF 1013
WRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFF
Sbjct: 182 WRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFF 241
Query: 1014 GTVVEYGAERKISRHSVLGAVVSVGVPQGVSLKVKLNRASQTYFFPIHLTGQLLPSAVFY 1193
GTVVEYGAERKISRHSVLGA VSVGVPQGVSLKVKLNRASQTYFFPIHLT QLLPSAVFY
Sbjct: 242 GTVVEYGAERKISRHSVLGAAVSVGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFY 301
Query: 1194 ATVGPLVLYFAMHRLVIKPYLRAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRR 1373
ATVGPLV+YFA+HRLVIKPYLRAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRR
Sbjct: 302 ATVGPLVVYFALHRLVIKPYLRAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRR 361
Query: 1374 IIEAEESRMGLIIVNAWYGKFVSDRSKRHERVKAIDVTVPLQCLVRDSKLILTEASXAGL 1553
IIEAEESRMGLIIVNAWYGKFV+D+SK+ E+VK IDVTVPLQCLV+DSKLILTEAS AGL
Sbjct: 362 IIEAEESRMGLIIVNAWYGKFVNDKSKKSEKVKVIDVTVPLQCLVKDSKLILTEASKAGL 421
Query: 1554 PGFYDPCVGEEKNLKVLYQFRGVLHXVMALDSEALRIPKQSHRIDTDG 1697
PGFYDPCVGEEKNLKVLYQFRGVLH VMALD+EALRIPKQSHRIDTDG
Sbjct: 422 PGFYDPCVGEEKNLKVLYQFRGVLHQVMALDNEALRIPKQSHRIDTDG 469
>ref|XP_858724.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 11
isoform 2 [Canis familiaris].
Length = 316
Score = 597 bits (1538), Expect = e-170
Identities = 301/315 (95%), Positives = 309/315 (98%)
Frame = +3
Query: 753 FSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHS 932
FSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHS
Sbjct: 2 FSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHS 61
Query: 933 FALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAVVSVGVPQGVSLK 1112
FALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGA VSVGVPQGVSLK
Sbjct: 62 FALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVGVPQGVSLK 121
Query: 1113 VKLNRASQTYFFPIHLTGQLLPSAVFYATVGPLVLYFAMHRLVIKPYLRAQKEKELEKQR 1292
VKLNRASQTYFFPIHLT QLLPSAVFYATVGPLV+YFA+HRLVIKPYLRAQKEKELEKQR
Sbjct: 122 VKLNRASQTYFFPIHLTDQLLPSAVFYATVGPLVVYFALHRLVIKPYLRAQKEKELEKQR 181
Query: 1293 ESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVSDRSKRHERVK 1472
ESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFV+D+SK+ E+VK
Sbjct: 182 ESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDKSKKSEKVK 241
Query: 1473 AIDVTVPLQCLVRDSKLILTEASXAGLPGFYDPCVGEEKNLKVLYQFRGVLHXVMALDSE 1652
IDVTVPLQCLV+DSKLILTEAS AGLPGFYDPCVGEEKNLKVLYQFRGVLH VMALD+E
Sbjct: 242 VIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMALDNE 301
Query: 1653 ALRIPKQSHRIDTDG 1697
ALRIPKQSHRIDTDG
Sbjct: 302 ALRIPKQSHRIDTDG 316
>ref|XP_852935.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 3
[Canis familiaris].
Length = 281
Score = 85.9 bits (211), Expect = 1e-16
Identities = 46/94 (48%), Positives = 61/94 (64%)
Frame = +3
Query: 9 KVAKMATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAE 188
+V ++A S D DYY +L V R AS+E +K AYR+L + +HPDK+ PE K +AE
Sbjct: 29 RVVRVARGPSRGLSDMVDYYEVLGVPRRASAEAIKKAYRKLALRWHPDKN--PENKEEAE 86
Query: 189 RLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEG 290
R F V QAYEVLSD + R +YD YG+ G+E G
Sbjct: 87 RRFKQVAQAYEVLSDARKRDVYDRYGEAGVEGGG 120
>ref|XP_861662.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 6
isoform b isoform 3 [Canis familiaris].
Length = 241
Score = 85.5 bits (210), Expect = 1e-16
Identities = 43/77 (55%), Positives = 55/77 (71%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS+E++K AYR+L + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL G
Sbjct: 61 KRDIYDRYGKEGLNGGG 77
>ref|XP_861635.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 6
isoform a isoform 2 [Canis familiaris].
Length = 328
Score = 85.5 bits (210), Expect = 1e-16
Identities = 43/77 (55%), Positives = 55/77 (71%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS+E++K AYR+L + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL G
Sbjct: 61 KRDIYDRYGKEGLNGGG 77
>ref|XP_850522.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 6
isoform a isoform 1 [Canis familiaris].
Length = 336
Score = 85.5 bits (210), Expect = 1e-16
Identities = 43/77 (55%), Positives = 55/77 (71%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS+E++K AYR+L + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL G
Sbjct: 61 KRDIYDRYGKEGLNGGG 77
>ref|XP_546188.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 6
isoform a [Canis familiaris].
Length = 252
Score = 85.5 bits (210), Expect = 1e-16
Identities = 43/77 (55%), Positives = 55/77 (71%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS+E++K AYR+L + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL G
Sbjct: 61 KRDIYDRYGKEGLNGGG 77
>ref|XP_852900.1| PREDICTED: similar to DnaJ homolog subfamily B member 1 (Heat shock
40 kDa protein 1) (Heat shock protein 40) (HSP40) (DnaJ
protein homolog 1) (HDJ-1) isoform 2 [Canis familiaris].
Length = 340
Score = 77.4 bits (189), Expect = 4e-14
Identities = 38/78 (48%), Positives = 52/78 (66%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY L + R AS EE+K AYRR + YHPDK+++P AE F + +AY+VLSDP
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP----GAEEKFKEIAEAYDVLSDP 58
Query: 237 QTRAIYDIYGKRGLEMEG 290
+ R I+D YG+ GL+ G
Sbjct: 59 RKREIFDRYGEEGLKGGG 76
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,955,332
Number of extensions: 1827309
Number of successful extensions: 7989
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 7859
Number of HSP's successfully gapped: 79
Length of query: 588
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 480
Effective length of database: 15,274,216
Effective search space: 7331623680
Effective search space used: 7331623680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007875
(1765 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127592.2| PREDICTED: dnaJ homolog subfamily C member 1... 350 e-108
Alignment gi|XP_003134565.2| PREDICTED: dnaJ homolog subfamily B member 6... 85 1e-16
Alignment gi|XP_003127964.1| PREDICTED: dnaJ homolog subfamily B member 4... 77 2e-14
Alignment gi|XP_003123416.1| PREDICTED: dnaJ homolog subfamily B member 1... 77 2e-14
Alignment gi|XP_003122027.2| PREDICTED: dnaJ homolog subfamily A member 3... 74 2e-13
Alignment gi|XP_003133716.2| PREDICTED: dnaJ homolog subfamily B member 2... 72 8e-13
Alignment gi|NP_999504.1| dnaJ homolog subfamily A member 4 [Sus scrofa]. 72 1e-12
Alignment gi|XP_003133928.1| PREDICTED: dnaJ homolog subfamily C member 2... 70 4e-12
Alignment gi|XP_003132456.1| PREDICTED: dnaJ homolog subfamily B member 8... 70 5e-12
Alignment gi|XP_003354675.1| PREDICTED: dnaJ homolog subfamily A member 3... 69 1e-11
>ref|XP_003127592.2| PREDICTED: dnaJ homolog subfamily C member 11-like [Sus scrofa].
Length = 260
Score = 350 bits (899), Expect(2) = e-108
Identities = 181/182 (99%), Positives = 181/182 (99%)
Frame = +3
Query: 858 MNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGA 1037
MNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGA
Sbjct: 1 MNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGA 60
Query: 1038 ERKISRHSVLGAVVSVGVPQGVSLKVKLNRASQTYFFPIHLTGQLLPSAVFYATVGPLVL 1217
ERKISRHSVLGAVVSVGVPQGVSLKVKLNRASQTYFFPIHLT QLLPSAVFYATVGPLVL
Sbjct: 61 ERKISRHSVLGAVVSVGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYATVGPLVL 120
Query: 1218 YFAMHRLVIKPYLRAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESR 1397
YFAMHRLVIKPYLRAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESR
Sbjct: 121 YFAMHRLVIKPYLRAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESR 180
Query: 1398 MG 1403
MG
Sbjct: 181 MG 182
Score = 62.0 bits (149), Expect(2) = e-108
Identities = 30/54 (55%), Positives = 30/54 (55%)
Frame = +2
Query: 1403 AHHCXXXXXXXXXXXXXXXXXXXXXXXDRAPAVPGQGLQAHPHRGLXGGAAWVL 1564
AHHC DRAPAVPGQGLQAHPHRGL GGAAWVL
Sbjct: 207 AHHCQRLVRQVRQRQEQEAREGQGHRRDRAPAVPGQGLQAHPHRGLQGGAAWVL 260
>ref|XP_003134565.2| PREDICTED: dnaJ homolog subfamily B member 6-like [Sus scrofa].
Length = 104
Score = 85.1 bits (209), Expect = 1e-16
Identities = 42/73 (57%), Positives = 54/73 (73%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS+E++K AYR+L + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGL 278
R IYD YGK GL
Sbjct: 61 KRDIYDKYGKEGL 73
>ref|XP_003127964.1| PREDICTED: dnaJ homolog subfamily B member 4-like [Sus scrofa].
Length = 337
Score = 77.4 bits (189), Expect = 2e-14
Identities = 36/75 (48%), Positives = 52/75 (69%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY +L + + AS E++K AYR+ + +HPDK++ P QAE F V +AYEVLSDP
Sbjct: 3 KDYYCILGIEKGASDEDIKKAYRKQALRFHPDKNKSP----QAEEKFKEVAEAYEVLSDP 58
Query: 237 QTRAIYDIYGKRGLE 281
+ R IYD +G+ GL+
Sbjct: 59 KKREIYDQFGEEGLK 73
>ref|XP_003123416.1| PREDICTED: dnaJ homolog subfamily B member 1 isoform 1 [Sus
scrofa].
Length = 339
Score = 77.4 bits (189), Expect = 2e-14
Identities = 38/78 (48%), Positives = 52/78 (66%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY L + R AS EE+K AYRR + YHPDK+++P AE F + +AY+VLSDP
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP----GAEEKFKEIAEAYDVLSDP 58
Query: 237 QTRAIYDIYGKRGLEMEG 290
+ R I+D YG+ GL+ G
Sbjct: 59 RKREIFDRYGEEGLKGGG 76
>ref|XP_003122027.2| PREDICTED: dnaJ homolog subfamily A member 3, mitochondrial-like
[Sus scrofa].
Length = 330
Score = 74.3 bits (181), Expect = 2e-13
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY +L + A+ +E+K AYR++ + YHPDK+++P AE F + +AY+VLSDP
Sbjct: 117 KDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEP----NAEEKFKEIAEAYDVLSDP 172
Query: 237 QTRAIYDIYGKRG 275
+ R +YD YG+ G
Sbjct: 173 KKRGLYDQYGEEG 185
>ref|XP_003133716.2| PREDICTED: dnaJ homolog subfamily B member 2-like [Sus scrofa].
Length = 278
Score = 72.4 bits (176), Expect = 8e-13
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = +3
Query: 63 YYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQT 242
YY +L+V R A+++++K AYR+ + +HPDK+ P+ K AE+ F V +AYEVLSD
Sbjct: 4 YYEILDVPRSATADDIKKAYRKKALQWHPDKN--PDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 243 RAIYDIYGKRGLEMEG 290
R IYD YG+ GL G
Sbjct: 62 REIYDRYGREGLTGAG 77
>ref|NP_999504.1| dnaJ homolog subfamily A member 4 [Sus scrofa].
Length = 397
Score = 71.6 bits (174), Expect = 1e-12
Identities = 37/76 (48%), Positives = 49/76 (64%)
Frame = +3
Query: 63 YYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQT 242
YY +L V+ AS EE+K AYR+L + YHPDK+ D K F L+ QAYEVLSDP+
Sbjct: 7 YYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEK------FKLISQAYEVLSDPKK 60
Query: 243 RAIYDIYGKRGLEMEG 290
R IYD G++ ++ G
Sbjct: 61 RDIYDQGGEQAIKEGG 76
>ref|XP_003133928.1| PREDICTED: dnaJ homolog subfamily C member 21 [Sus scrofa].
Length = 532
Score = 70.1 bits (170), Expect = 4e-12
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = +3
Query: 63 YYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQT 242
+Y L VRR+AS EELK AYR+L + +HPDK+ D ++A F L+ AY+VLSDPQ
Sbjct: 4 HYEALGVRRDASEEELKKAYRKLALKWHPDKNLDN--AAEAAEQFKLIQAAYDVLSDPQE 61
Query: 243 RAIYD 257
RA YD
Sbjct: 62 RAWYD 66
>ref|XP_003132456.1| PREDICTED: dnaJ homolog subfamily B member 8-like [Sus scrofa].
Length = 231
Score = 69.7 bits (169), Expect = 5e-12
Identities = 33/69 (47%), Positives = 49/69 (71%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
+YY +L V+ AS E++K AYR+L + +HPDK +P+ K +AE+ F V +AYEVLSD +
Sbjct: 3 NYYEVLGVQASASPEDIKKAYRKLALRWHPDK--NPDNKEEAEKKFKQVSEAYEVLSDSK 60
Query: 240 TRAIYDIYG 266
R++YD G
Sbjct: 61 KRSVYDRAG 69
>ref|XP_003354675.1| PREDICTED: dnaJ homolog subfamily A member 3, mitochondrial isoform
2 [Sus scrofa].
Length = 480
Score = 68.6 bits (166), Expect = 1e-11
Identities = 35/78 (44%), Positives = 47/78 (60%)
Frame = +3
Query: 48 LDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVL 227
L EDYY +L V R AS +E+K AY +L YHPD ++D +A+ F+ + +AYEVL
Sbjct: 89 LSKEDYYQILGVPRSASQKEIKKAYYQLAKKYHPDTNKD---DPKAKEKFSQLAEAYEVL 145
Query: 228 SDPQTRAIYDIYGKRGLE 281
SD R YD YG G +
Sbjct: 146 SDEVKRKQYDTYGSAGFD 163
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,875,088
Number of extensions: 1133704
Number of successful extensions: 4943
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 4878
Number of HSP's successfully gapped: 36
Length of query: 588
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 484
Effective length of database: 8,754,644
Effective search space: 4237247696
Effective search space used: 4237247696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007875
(1765 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766292.2| dnaJ homolog subfamily C member 11 [Mus musculu... 1014 0.0
Alignment gi|NP_001120839.1| dnaJ homolog subfamily B member 6 isoform d ... 82 1e-15
Alignment gi|NP_001033030.2| dnaJ homolog subfamily B member 6 isoform b ... 82 1e-15
Alignment gi|NP_035977.2| dnaJ homolog subfamily B member 6 isoform c [Mu... 82 1e-15
Alignment gi|NP_001033029.1| dnaJ homolog subfamily B member 6 isoform a ... 82 1e-15
Alignment gi|NP_067292.2| dnaJ homolog subfamily B member 7 [Mus musculus]. 82 1e-15
Alignment gi|NP_063927.1| dnaJ homolog subfamily B member 5 [Mus musculus]. 78 3e-14
Alignment gi|NP_061278.1| dnaJ homolog subfamily B member 1 [Mus musculus]. 76 1e-13
Alignment gi|NP_032325.2| dnaJ homolog subfamily B member 3 [Mus musculus]. 75 1e-13
Alignment gi|NP_080202.1| dnaJ homolog subfamily B member 4 [Mus musculus]. 75 2e-13
>ref|NP_766292.2| dnaJ homolog subfamily C member 11 [Mus musculus].
Length = 559
Score = 1014 bits (2622), Expect = 0.0
Identities = 507/559 (90%), Positives = 529/559 (94%)
Frame = +3
Query: 21 MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN 200
MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN
Sbjct: 1 MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN 60
Query: 201 LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAXXXXXXXXXXXXXXXXXXX 380
LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVER+RTPA
Sbjct: 61 LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERKRTPAEIREEFERLQREREERRLQ 120
Query: 381 XXTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTASDTAIL 560
TNPKGTISVG+DATDLFDRY+EEYEDVSGSGFPQIEINKMHISQSIEAPLTA+DTAIL
Sbjct: 121 QRTNPKGTISVGVDATDLFDRYDEEYEDVSGSGFPQIEINKMHISQSIEAPLTATDTAIL 180
Query: 561 SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN 740
SGSLSTQNGNGGGS+NFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN
Sbjct: 181 SGSLSTQNGNGGGSVNFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN 240
Query: 741 CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLG 920
CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKT HFTVALQLG
Sbjct: 241 CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTCHFTVALQLG 300
Query: 921 IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAVVSVGVPQG 1100
IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGT+VEYGAERKISRHSVLGA VS+GVPQG
Sbjct: 301 IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTIVEYGAERKISRHSVLGAAVSIGVPQG 360
Query: 1101 VSLKVKLNRASQTYFFPIHLTGQLLPSAVFYATVGPLVLYFAMHRLVIKPYLRAQKEKEL 1280
VSLKVKLNRASQTYFFPIHLT QLLPSAVFYATVGPLV+Y A+HRL+I+PYLRAQKEKEL
Sbjct: 361 VSLKVKLNRASQTYFFPIHLTDQLLPSAVFYATVGPLVVYLAVHRLIIRPYLRAQKEKEL 420
Query: 1281 EKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVSDRSKRH 1460
EKQRE+TA+DILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFV+D+S+++
Sbjct: 421 EKQRENTASDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDKSRKN 480
Query: 1461 ERVKAIDVTVPLQCLVRDSKLILTEASXAGLPGFYDPCVGEEKNLKVLYQFRGVLHXVMA 1640
E+VK IDVTVPLQCLV+DSKLILTEAS AGLPGFYDPCVGEEK+L+VLYQFRGVLH VM
Sbjct: 481 EKVKVIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKSLRVLYQFRGVLHQVMV 540
Query: 1641 LDSEALRIPKQSHRIDTDG 1697
DSEALRIPKQSHRIDTDG
Sbjct: 541 PDSEALRIPKQSHRIDTDG 559
>ref|NP_001120839.1| dnaJ homolog subfamily B member 6 isoform d [Mus musculus].
Length = 241
Score = 82.4 bits (202), Expect = 1e-15
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS E++K AYR+ + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL G
Sbjct: 61 KRDIYDKYGKEGLNGGG 77
>ref|NP_001033030.2| dnaJ homolog subfamily B member 6 isoform b [Mus musculus].
Length = 261
Score = 82.4 bits (202), Expect = 1e-15
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS E++K AYR+ + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL G
Sbjct: 61 KRDIYDKYGKEGLNGGG 77
>ref|NP_035977.2| dnaJ homolog subfamily B member 6 isoform c [Mus musculus].
Length = 242
Score = 82.4 bits (202), Expect = 1e-15
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS E++K AYR+ + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL G
Sbjct: 61 KRDIYDKYGKEGLNGGG 77
>ref|NP_001033029.1| dnaJ homolog subfamily B member 6 isoform a [Mus musculus].
Length = 365
Score = 82.4 bits (202), Expect = 1e-15
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS E++K AYR+ + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL G
Sbjct: 61 KRDIYDKYGKEGLNGGG 77
>ref|NP_067292.2| dnaJ homolog subfamily B member 7 [Mus musculus].
Length = 312
Score = 82.0 bits (201), Expect = 1e-15
Identities = 41/77 (53%), Positives = 55/77 (71%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS E++K AYR++ + +HPDK+ PE K +AER F V +AYEVLS+ +
Sbjct: 3 DYYEVLGVQRYASPEDIKRAYRKVALKWHPDKN--PENKEEAERKFKEVAEAYEVLSNVE 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL+ G
Sbjct: 61 KRDIYDKYGKEGLDGRG 77
>ref|NP_063927.1| dnaJ homolog subfamily B member 5 [Mus musculus].
Length = 348
Score = 77.8 bits (190), Expect = 3e-14
Identities = 34/78 (43%), Positives = 54/78 (69%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY +L + A+ +E+K AYR++ + YHPDK+++P AE F + +AY+VLSDP
Sbjct: 3 KDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEP----NAEEKFKEIAEAYDVLSDP 58
Query: 237 QTRAIYDIYGKRGLEMEG 290
+ R++YD YG+ GL+ G
Sbjct: 59 KKRSLYDQYGEEGLKTGG 76
>ref|NP_061278.1| dnaJ homolog subfamily B member 1 [Mus musculus].
Length = 340
Score = 75.9 bits (185), Expect = 1e-13
Identities = 36/75 (48%), Positives = 51/75 (68%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY L + R AS +E+K AYRR + YHPDK+++P AE F + +AY+VLSDP
Sbjct: 3 KDYYQTLGLARGASDDEIKRAYRRQALRYHPDKNKEP----GAEEKFKEIAEAYDVLSDP 58
Query: 237 QTRAIYDIYGKRGLE 281
+ R I+D YG+ GL+
Sbjct: 59 RKREIFDRYGEEGLK 73
>ref|NP_032325.2| dnaJ homolog subfamily B member 3 [Mus musculus].
Length = 242
Score = 75.5 bits (184), Expect = 1e-13
Identities = 38/72 (52%), Positives = 51/72 (70%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V R+AS+E ++ AYR+L + +HPDK +PE K +AER F V QAYEVLSD +
Sbjct: 3 DYYEVLGVPRQASAEAIRKAYRKLALKWHPDK--NPEHKEEAERRFKQVAQAYEVLSDVR 60
Query: 240 TRAIYDIYGKRG 275
R +YD G+ G
Sbjct: 61 KREVYDRCGEVG 72
>ref|NP_080202.1| dnaJ homolog subfamily B member 4 [Mus musculus].
Length = 337
Score = 75.1 bits (183), Expect = 2e-13
Identities = 35/75 (46%), Positives = 52/75 (69%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY +L + + A+ E++K AYR+ + +HPDK++ P QAE F V +AYEVLSDP
Sbjct: 3 KDYYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSP----QAEEKFKEVAEAYEVLSDP 58
Query: 237 QTRAIYDIYGKRGLE 281
+ R IYD +G+ GL+
Sbjct: 59 KKREIYDQFGEEGLK 73
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,122,644
Number of extensions: 1483123
Number of successful extensions: 6470
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 6351
Number of HSP's successfully gapped: 51
Length of query: 588
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 481
Effective length of database: 12,403,707
Effective search space: 5966183067
Effective search space used: 5966183067
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007875
(1765 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060668.2| dnaJ homolog subfamily C member 11 [Homo sapien... 1024 0.0
Alignment gi|NP_490647.1| dnaJ homolog subfamily B member 6 isoform a [Ho... 85 2e-16
Alignment gi|NP_005485.1| dnaJ homolog subfamily B member 6 isoform b [Ho... 85 2e-16
Alignment gi|NP_001001394.1| dnaJ homolog subfamily B member 3 [Homo sapi... 83 7e-16
Alignment gi|NP_006136.1| dnaJ homolog subfamily B member 1 [Homo sapiens]. 78 2e-14
Alignment gi|NP_008965.2| dnaJ homolog subfamily B member 4 [Homo sapiens]. 77 4e-14
Alignment gi|NP_001128477.1| dnaJ homolog subfamily B member 5 isoform 1 ... 77 4e-14
Alignment gi|NP_036398.3| dnaJ homolog subfamily B member 5 isoform 3 [Ho... 77 4e-14
Alignment gi|NP_001128476.2| dnaJ homolog subfamily B member 5 isoform 2 ... 77 4e-14
Alignment gi|NP_660157.1| dnaJ homolog subfamily B member 7 [Homo sapiens]. 75 1e-13
>ref|NP_060668.2| dnaJ homolog subfamily C member 11 [Homo sapiens].
Length = 559
Score = 1024 bits (2648), Expect = 0.0
Identities = 515/559 (92%), Positives = 529/559 (94%)
Frame = +3
Query: 21 MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN 200
MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN
Sbjct: 1 MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFN 60
Query: 201 LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAXXXXXXXXXXXXXXXXXXX 380
LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPA
Sbjct: 61 LVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEFERLQREREERRLQ 120
Query: 381 XXTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTASDTAIL 560
TNPKGTISVG+DATDLFDRY+EEYEDVSGS FPQIEINKMHISQSIEAPLTA+DTAIL
Sbjct: 121 QRTNPKGTISVGVDATDLFDRYDEEYEDVSGSSFPQIEINKMHISQSIEAPLTATDTAIL 180
Query: 561 SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN 740
SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN
Sbjct: 181 SGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTN 240
Query: 741 CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLG 920
CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLG
Sbjct: 241 CALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLG 300
Query: 921 IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAVVSVGVPQG 1100
IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGA VSVGVPQG
Sbjct: 301 IPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVGVPQG 360
Query: 1101 VSLKVKLNRASQTYFFPIHLTGQLLPSAVFYATVGPLVLYFAMHRLVIKPYLRAQKEKEL 1280
VSLKVKLNRASQTYFFPIHLT QLLPSA+FYATVGPLV+YFAMHRL+IKPYLRAQKEKEL
Sbjct: 361 VSLKVKLNRASQTYFFPIHLTDQLLPSAMFYATVGPLVVYFAMHRLIIKPYLRAQKEKEL 420
Query: 1281 EKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVSDRSKRH 1460
EKQRES ATD+LQKKQEAE+AVRLMQESVRRIIEAEESRMGLIIVNAWYGKFV+D+S++
Sbjct: 421 EKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDKSRKS 480
Query: 1461 ERVKAIDVTVPLQCLVRDSKLILTEASXAGLPGFYDPCVGEEKNLKVLYQFRGVLHXVMA 1640
E+VK IDVTVPLQCLV+DSKLILTEAS AGLPGFYDPCVGEEKNLKVLYQFRGVLH VM
Sbjct: 481 EKVKVIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMV 540
Query: 1641 LDSEALRIPKQSHRIDTDG 1697
LDSEALRIPKQSHRIDTDG
Sbjct: 541 LDSEALRIPKQSHRIDTDG 559
>ref|NP_490647.1| dnaJ homolog subfamily B member 6 isoform a [Homo sapiens].
Length = 326
Score = 84.7 bits (208), Expect = 2e-16
Identities = 43/77 (55%), Positives = 54/77 (70%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS E++K AYR+L + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL G
Sbjct: 61 KRDIYDKYGKEGLNGGG 77
>ref|NP_005485.1| dnaJ homolog subfamily B member 6 isoform b [Homo sapiens].
Length = 241
Score = 84.7 bits (208), Expect = 2e-16
Identities = 43/77 (55%), Positives = 54/77 (70%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L V+R AS E++K AYR+L + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKN--PENKEEAERKFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YGK GL G
Sbjct: 61 KRDIYDKYGKEGLNGGG 77
>ref|NP_001001394.1| dnaJ homolog subfamily B member 3 [Homo sapiens].
Length = 145
Score = 83.2 bits (204), Expect = 7e-16
Identities = 42/74 (56%), Positives = 54/74 (72%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L+V R+ASSE +K AYR+L + +HPDK+ PE K +AER F V +AYEVLSD +
Sbjct: 3 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKN--PENKEEAERRFKQVAEAYEVLSDAK 60
Query: 240 TRAIYDIYGKRGLE 281
R IYD YG+ G E
Sbjct: 61 KRDIYDRYGEAGAE 74
>ref|NP_006136.1| dnaJ homolog subfamily B member 1 [Homo sapiens].
Length = 340
Score = 78.2 bits (191), Expect = 2e-14
Identities = 38/78 (48%), Positives = 52/78 (66%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY L + R AS EE+K AYRR + YHPDK+++P AE F + +AY+VLSDP
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP----GAEEKFKEIAEAYDVLSDP 58
Query: 237 QTRAIYDIYGKRGLEMEG 290
+ R I+D YG+ GL+ G
Sbjct: 59 RKREIFDRYGEEGLKGSG 76
>ref|NP_008965.2| dnaJ homolog subfamily B member 4 [Homo sapiens].
Length = 337
Score = 77.4 bits (189), Expect = 4e-14
Identities = 36/75 (48%), Positives = 52/75 (69%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY +L + + AS E++K AYR+ + +HPDK++ P QAE F V +AYEVLSDP
Sbjct: 3 KDYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSP----QAEEKFKEVAEAYEVLSDP 58
Query: 237 QTRAIYDIYGKRGLE 281
+ R IYD +G+ GL+
Sbjct: 59 KKREIYDQFGEEGLK 73
>ref|NP_001128477.1| dnaJ homolog subfamily B member 5 isoform 1 [Homo sapiens].
Length = 420
Score = 77.4 bits (189), Expect = 4e-14
Identities = 34/78 (43%), Positives = 53/78 (67%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY +L + A+ +E+K AYR++ + YHPDK+++P AE F + +AY+VLSDP
Sbjct: 75 KDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEP----NAEEKFKEIAEAYDVLSDP 130
Query: 237 QTRAIYDIYGKRGLEMEG 290
+ R +YD YG+ GL+ G
Sbjct: 131 KKRGLYDQYGEEGLKTGG 148
>ref|NP_036398.3| dnaJ homolog subfamily B member 5 isoform 3 [Homo sapiens].
Length = 348
Score = 77.4 bits (189), Expect = 4e-14
Identities = 34/78 (43%), Positives = 53/78 (67%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY +L + A+ +E+K AYR++ + YHPDK+++P AE F + +AY+VLSDP
Sbjct: 3 KDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEP----NAEEKFKEIAEAYDVLSDP 58
Query: 237 QTRAIYDIYGKRGLEMEG 290
+ R +YD YG+ GL+ G
Sbjct: 59 KKRGLYDQYGEEGLKTGG 76
>ref|NP_001128476.2| dnaJ homolog subfamily B member 5 isoform 2 [Homo sapiens].
Length = 462
Score = 77.4 bits (189), Expect = 4e-14
Identities = 34/78 (43%), Positives = 53/78 (67%)
Frame = +3
Query: 57 EDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDP 236
+DYY +L + A+ +E+K AYR++ + YHPDK+++P AE F + +AY+VLSDP
Sbjct: 117 KDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEP----NAEEKFKEIAEAYDVLSDP 172
Query: 237 QTRAIYDIYGKRGLEMEG 290
+ R +YD YG+ GL+ G
Sbjct: 173 KKRGLYDQYGEEGLKTGG 190
>ref|NP_660157.1| dnaJ homolog subfamily B member 7 [Homo sapiens].
Length = 309
Score = 75.5 bits (184), Expect = 1e-13
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +3
Query: 60 DYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQ 239
DYY +L ++R AS E++K AY ++ + +HPDK+ PE K +AER F V +AYEVLS+ +
Sbjct: 3 DYYEVLGLQRYASPEDIKKAYHKVALKWHPDKN--PENKEEAERKFKEVAEAYEVLSNDE 60
Query: 240 TRAIYDIYGKRGLEMEG 290
R IYD YG GL G
Sbjct: 61 KRDIYDKYGTEGLNGGG 77
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 66,514,751
Number of extensions: 1787779
Number of successful extensions: 7819
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 7679
Number of HSP's successfully gapped: 45
Length of query: 588
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 480
Effective length of database: 14,737,052
Effective search space: 7073784960
Effective search space used: 7073784960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007875
(1765 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 371 e-100
>Sscrofa_Chr06
|| Length = 157765593
Score = 371 bits (187), Expect = e-100
Identities = 190/191 (99%)
Strand = Plus / Plus
Query: 724 gcttcgtgacgacgaactgtgctctgcagttctcgtcgcgcggcatccggcccggcctca 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62370729 gcttcgtgacgacgaactgtgctctgcagttctcgtcgcgcggcatccggcccggcctca 62370788
Query: 784 ccaccgtcctggctcggaacctggacaagaacaccgtgggctacctgcagtggcgctggg 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62370789 ccaccgtcctggctcggaacctggacaagaacaccgtgggctacctgcagtggcgctggg 62370848
Query: 844 gcatccagtcagccatgaacaccagcatcgtgcgggacaccaaaaccagccacttcaccg 903
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62370849 gcatccagtcagccatgaacaccagcatcgtacgggacaccaaaaccagccacttcaccg 62370908
Query: 904 tggcgctgcaa 914
|||||||||||
Sbjct: 62370909 tggcgctgcaa 62370919
Score = 295 bits (149), Expect = 4e-77
Identities = 155/157 (98%)
Strand = Plus / Plus
Query: 1118 gttaaacagggccagtcagacctacttcttcccgattcacctgacgggccagctgctccc 1177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 62374942 gttaaacagggccagtcagacctacttcttcccgattcacctgacggaccagctgctccc 62375001
Query: 1178 cagcgccgtgttctacgccaccgtggggccgctcgtgctctacttcgcaatgcaccgcct 1237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62375002 cagcgccgtgttctatgccaccgtggggccgctcgtgctctacttcgcaatgcaccgcct 62375061
Query: 1238 ggtcatcaaaccctacctcagggcccagaaggagaag 1274
|||||||||||||||||||||||||||||||||||||
Sbjct: 62375062 ggtcatcaaaccctacctcagggcccagaaggagaag 62375098
Score = 281 bits (142), Expect = 6e-73
Identities = 144/145 (99%)
Strand = Plus / Plus
Query: 1401 gggctcatcattgtcaacgcctggtacggcaagttcgtcagcgacaggagcaagaggcac 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62377037 gggctcatcattgtcaacgcctggtacggcaagttcgtcagcgacaggagcaagaggcac 62377096
Query: 1461 gagagggtcaaggccatcgacgtgaccgtgcccctgcagtgcctggtcagggactccaag 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62377097 gagagggtcaaggccatcgacgtgaccgtgcccctgcagtgcctggtcagggactccaag 62377156
Query: 1521 ctcatcctcaccgaggcctccnagg 1545
||||||||||||||||||||| |||
Sbjct: 62377157 ctcatcctcaccgaggcctccaagg 62377181
Score = 240 bits (121), Expect = 2e-60
Identities = 124/125 (99%)
Strand = Plus / Plus
Query: 526 aggcacccttgaccgcttcagacacagccatcctctctggaagcctctcaacccagaatg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62365896 aggcacccttgaccgcttcagacacagccatcctctctggaagcctctcaacccagaatg 62365955
Query: 586 ggaacggaggggggtccattaacttcgcgctcagacgagtcacttctgcaaagggatggg 645
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62365956 gaaacggaggggggtccattaacttcgcgctcagacgagtcacttctgcaaagggatggg 62366015
Query: 646 gtgag 650
|||||
Sbjct: 62366016 gtgag 62366020
Score = 240 bits (121), Expect = 2e-60
Identities = 129/132 (97%)
Strand = Plus / Plus
Query: 1543 aggcggggctgcctgggttctatgacccgtgtgtcggggaagagaagaacctgaaagtgc 1602
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 62377880 aggcggggctgcctgggttctatgacccgtgtgtgggggaagagaagaacctgaaagtgc 62377939
Query: 1603 tctaccagttccgaggcgtgctgcatcangtgatggcgctggacagcgaggcgctcagga 1662
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 62377940 tctaccagttccgaggcgtcctgcatcaggtgatggcgctggacagcgaggcgctcagga 62377999
Query: 1663 taccaaagcagt 1674
||||||||||||
Sbjct: 62378000 taccaaagcagt 62378011
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1001 ggcaggcttcttcgggacggtggtggagtacggagcggagaggaagatctccaggcacag 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62371705 ggcaggcttcttcgggacggtggtggagtacggagcggagaggaagatctccaggcacag 62371764
Query: 1061 tgtcttaggggcagtggtcagcgttggagtcccccagggcgtctctctcaaagtcaagt 1119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62371765 tgtcttaggggcagtggtcagcgttggagtcccccagggcgtctctctcaaagtcaagt 62371823
Score = 165 bits (83), Expect = 1e-37
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 915 ctcggaatccctcactccttcgcactgatcagttatcagcacaagttccaggatgacgac 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62371350 ctcggaatccctcactccttcgcactgatcagttatcagcacaagttccaggatgacgac 62371409
Query: 975 cagacccgcgtcaaaggctccctcaag 1001
|||||||| ||||||||||||||||||
Sbjct: 62371410 cagacccgagtcaaaggctccctcaag 62371436
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 649 agttagaattcggagctggggatctgcagggacctttatttggcctgaagctgttccgta 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62367380 agttagaattcggagctggggatctgcagggacctttatttggcctgaagctgttccgta 62367439
Query: 709 atctcacaccaagatg 724
||||||||||||||||
Sbjct: 62367440 atctcacaccaagatg 62367455
Score = 143 bits (72), Expect = 4e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1274 ggagctggaaaagcagagggaaagcacagccaccgacattctgcagaagaaacaggaggc 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62376413 ggagctggaaaagcagagggaaagcacagccaccgacattctgcagaagaaacaggaggc 62376472
Query: 1334 agaagctgcggt 1345
||||||||||||
Sbjct: 62376473 agaagctgcggt 62376484
Score = 141 bits (71), Expect = 1e-30
Identities = 85/87 (97%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1675 ctcacaggattgatactgatggataaagggcttgagaaaccgga-taaaaggaggctgca 1733
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 62378575 ctcacaggattgatactgatggataaagggcttgagaaaccggattaaaaggaggctgca 62378634
Query: 1734 aaaaatcatttccctgggaatctacaa 1760
||||||||||| |||||||||||||||
Sbjct: 62378635 aaaaatcattt-cctgggaatctacaa 62378660
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1343 ggtccgactgatgcaggaatcggtccgaagaataatcgaggccgaagagtccagaatggg 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62376906 ggtccgactgatgcaggaatcggtccgaagaataatcgaggccgaagagtccagaatggg 62376965
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,535,734
Number of extensions: 241
Number of successful extensions: 241
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 11
Length of query: 1765
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1743
Effective length of database: 2,808,408,574
Effective search space: 4895056144482
Effective search space used: 4895056144482
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)