Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007877
(1030 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776604.1| succinate dehydrogenase [ubiquinone] cytochrome... 239 2e-63
>ref|NP_776604.1| succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial [Bos taurus].
Length = 158
Score = 239 bits (611), Expect = 2e-63
Identities = 116/156 (74%), Positives = 118/156 (75%)
Frame = +1
Query: 70 LWRLSVLCGARGGGALVLRTSVVRPAHVSAFLQDRPTPGWCGVQHIHLSPSHQASSKAAS 249
LWRLSVLCGA+ G AL LRT VVRPA VSAFLQDRP GWCG QHIHLSPSH + SKAAS
Sbjct: 3 LWRLSVLCGAKEGRALFLRTPVVRPALVSAFLQDRPAQGWCGTQHIHLSPSHHSGSKAAS 62
Query: 250 LHWTGERXXXXXXXXXXPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDXXXXX 429
LHWTGER PAAYLNPCSAMDYSLAA LTLH HWGIGQVVTDYV GD
Sbjct: 63 LHWTGERVVSVLLLGLIPAAYLNPCSAMDYSLAATLTLHSHWGIGQVVTDYVHGDAVQKA 122
Query: 430 XXXXXXXXXXFTFAGLCYFNYHDVGICKAVAMLWKL 537
FTFAGLCYFNYHDVGICKAVAMLWKL
Sbjct: 123 AKTGLLVLSAFTFAGLCYFNYHDVGICKAVAMLWKL 158
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,798,604
Number of extensions: 1064068
Number of successful extensions: 2876
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2875
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,273,310
Effective search space: 3425594400
Effective search space used: 3425594400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007877
(1030 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536573.2| PREDICTED: similar to Succinate dehydrogenase [... 211 7e-55
>ref|XP_536573.2| PREDICTED: similar to Succinate dehydrogenase [ubiquinone]
cytochrome b small subunit, mitochondrial precursor
(CybS) (Succinate-ubiquinone reductase membrane anchor
subunit) (QPs3) (CII-4) (Succinate dehydrogenase complex
subunit D) (Succinate-ubiquinone oxi... [Canis
familiaris].
Length = 177
Score = 211 bits (538), Expect = 7e-55
Identities = 102/142 (71%), Positives = 106/142 (74%)
Frame = +1
Query: 112 ALVLRTSVVRPAHVSAFLQDRPTPGWCGVQHIHLSPSHQASSKAASLHWTGERXXXXXXX 291
AL LR VVRPAHVSAFLQD+P PGWC QHIHLSP+H + SKAASLHWTGER
Sbjct: 36 ALFLRIPVVRPAHVSAFLQDQPAPGWCRTQHIHLSPNHYSGSKAASLHWTGERVVSVLLL 95
Query: 292 XXXPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDXXXXXXXXXXXXXXXFTFA 471
PAAYLNP SAMDYSLAAALTLH HWG+GQVVTDYVRGD TFA
Sbjct: 96 GLIPAAYLNPGSAMDYSLAAALTLHSHWGLGQVVTDYVRGDGLQKAVKAGVLALSALTFA 155
Query: 472 GLCYFNYHDVGICKAVAMLWKL 537
GLCYFNYHDVGICKAVAMLWKL
Sbjct: 156 GLCYFNYHDVGICKAVAMLWKL 177
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,309,300
Number of extensions: 1086621
Number of successful extensions: 2829
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2827
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 239
Effective length of database: 15,407,560
Effective search space: 3682406840
Effective search space used: 3682406840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007877
(1030 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090985.1| succinate dehydrogenase [ubiquinone] cytochr... 274 7e-74
Alignment gi|XP_003129896.1| PREDICTED: succinate dehydrogenase [ubiquino... 272 3e-73
>ref|NP_001090985.1| succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial [Sus scrofa].
Length = 159
Score = 274 bits (700), Expect = 7e-74
Identities = 133/159 (83%), Positives = 133/159 (83%)
Frame = +1
Query: 61 MATLWRLSVLCGARGGGALVLRTSVVRPAHVSAFLQDRPTPGWCGVQHIHLSPSHQASSK 240
MATLWRLSVLCGARGGGALVLRTSVVRPAHVSAFLQDR TPGWCGVQHIHLSPSHQASSK
Sbjct: 1 MATLWRLSVLCGARGGGALVLRTSVVRPAHVSAFLQDRHTPGWCGVQHIHLSPSHQASSK 60
Query: 241 AASLHWTGERXXXXXXXXXXPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDXX 420
AASLHWTGER PAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGD
Sbjct: 61 AASLHWTGERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDAL 120
Query: 421 XXXXXXXXXXXXXFTFAGLCYFNYHDVGICKAVAMLWKL 537
FTFAGLCYFNYHDVGICKAVAMLWKL
Sbjct: 121 QKAAKAGLLALSAFTFAGLCYFNYHDVGICKAVAMLWKL 159
>ref|XP_003129896.1| PREDICTED: succinate dehydrogenase [ubiquinone] cytochrome b small
subunit, mitochondrial-like [Sus scrofa].
Length = 159
Score = 272 bits (695), Expect = 3e-73
Identities = 132/159 (83%), Positives = 132/159 (83%)
Frame = +1
Query: 61 MATLWRLSVLCGARGGGALVLRTSVVRPAHVSAFLQDRPTPGWCGVQHIHLSPSHQASSK 240
MATLWRLSVLCG RGGGALVLRTSVVRPAHVSAFLQDR TPGWCGVQHIHLSPSHQASSK
Sbjct: 1 MATLWRLSVLCGPRGGGALVLRTSVVRPAHVSAFLQDRHTPGWCGVQHIHLSPSHQASSK 60
Query: 241 AASLHWTGERXXXXXXXXXXPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDXX 420
AASLHWTGER PAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGD
Sbjct: 61 AASLHWTGERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDAL 120
Query: 421 XXXXXXXXXXXXXFTFAGLCYFNYHDVGICKAVAMLWKL 537
FTFAGLCYFNYHDVGICKAVAMLWKL
Sbjct: 121 QKAAKAGLLALSAFTFAGLCYFNYHDVGICKAVAMLWKL 159
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,944,164
Number of extensions: 682212
Number of successful extensions: 1877
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1876
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 243
Effective length of database: 8,854,232
Effective search space: 2151578376
Effective search space used: 2151578376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007877
(1030 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080124.1| succinate dehydrogenase [ubiquinone] cytochrome... 218 5e-57
>ref|NP_080124.1| succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial [Mus musculus].
Length = 159
Score = 218 bits (556), Expect = 5e-57
Identities = 105/159 (66%), Positives = 115/159 (72%)
Frame = +1
Query: 61 MATLWRLSVLCGARGGGALVLRTSVVRPAHVSAFLQDRPTPGWCGVQHIHLSPSHQASSK 240
MA L +L VLC +G AL+LR+ VVRPA+VSAFLQD+PT G CG QHIHLSPSH + SK
Sbjct: 1 MAVLLKLGVLCSGQGARALLLRSRVVRPAYVSAFLQDQPTQGRCGTQHIHLSPSHHSGSK 60
Query: 241 AASLHWTGERXXXXXXXXXXPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDXX 420
AASLHWT ER PA YLNPCS +DYSLAAALTLH HWG+GQVVTDYV GD
Sbjct: 61 AASLHWTSERVVSVLLLGLIPAGYLNPCSVVDYSLAAALTLHSHWGLGQVVTDYVHGDTL 120
Query: 421 XXXXXXXXXXXXXFTFAGLCYFNYHDVGICKAVAMLWKL 537
TFAGLCYFNYHDVGIC+AVAMLWKL
Sbjct: 121 PKAARAGLLALSALTFAGLCYFNYHDVGICRAVAMLWKL 159
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,884,950
Number of extensions: 906412
Number of successful extensions: 2511
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2509
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 241
Effective length of database: 12,553,887
Effective search space: 3025486767
Effective search space used: 3025486767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007877
(1030 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002993.1| succinate dehydrogenase [ubiquinone] cytochrome... 246 2e-65
>ref|NP_002993.1| succinate dehydrogenase [ubiquinone] cytochrome b small subunit,
mitochondrial precursor [Homo sapiens].
Length = 159
Score = 246 bits (628), Expect = 2e-65
Identities = 117/159 (73%), Positives = 122/159 (76%)
Frame = +1
Query: 61 MATLWRLSVLCGARGGGALVLRTSVVRPAHVSAFLQDRPTPGWCGVQHIHLSPSHQASSK 240
MA LWRLS +CGA GG AL+LRT VVRPAH+SAFLQDRP P WCGVQHIHLSPSH + SK
Sbjct: 1 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK 60
Query: 241 AASLHWTGERXXXXXXXXXXPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDXX 420
AASLHWT ER PAAYLNPCSAMDYSLAAALTLHGHWG+GQVVTDYV GD
Sbjct: 61 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL 120
Query: 421 XXXXXXXXXXXXXFTFAGLCYFNYHDVGICKAVAMLWKL 537
TFAGLCYFNYHDVGICKAVAMLWKL
Sbjct: 121 QKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL 159
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,764,022
Number of extensions: 1074707
Number of successful extensions: 2968
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2959
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,901,872
Effective search space: 3576449280
Effective search space used: 3576449280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007877
(1030 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1263 0.0
Sscrofa_Chr04 547 e-153
Sscrofa_Chr02 537 e-150
>Sscrofa_Chr09
|| Length = 153670197
Score = 1263 bits (637), Expect = 0.0
Identities = 652/657 (99%)
Strand = Plus / Plus
Query: 374 ggggcattggacaagtcgttactgactacgtgcgaggggatgcactgcagaaagctgcca 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44644624 ggggcattggacaagtcgttactgactacgtgcgaggggatgcactgcagaaagctgcca 44644683
Query: 434 aggcaggccttttggcgctctcggctttcacctttgctgggctttgttatttcaactatc 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44644684 aggcaggccttttggcgctctcggctttcacctttgctgggctttgttatttcaactatc 44644743
Query: 494 atgatgtgggtatctgcaaagctgttgccatgttgtggaagctctgagcttttagagcta 553
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44644744 atgatgtggggatctgcaaagctgttgccatgttgtggaagctctgagcttttagagcta 44644803
Query: 554 ataccttgagagttgattgtacacctccttgcctctgctctgtcatgccattcagctcac 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44644804 ataccttgagagttgattgtacacctccttgcctctgctctgtcatgccattcagctcac 44644863
Query: 614 agtaagaaggaaataatagataagtccattggtgagacaaacctcttctcctaatcagtg 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44644864 agtaagaaggaaataatagataagtccattggtgagacaaacctcttctcctaatcagtg 44644923
Query: 674 ggttatttttggaatttaatctttgaggaaagatttgagaggaatcgtatccaagaaatt 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44644924 ggttatttttggaatttaatctttgaggaaagatttgagaggaatcgtatccaagaaatt 44644983
Query: 734 gtgagactgagctctcacaagactcagtgtctctcagcttttcacgagactcggtgtaac 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44644984 gtgagactgagctctcacaagactcagtgtctctcagcttttcacgagactcggtgtaac 44645043
Query: 794 taagcattacatatgagcttttgccttttcatttatcagacttttaaagggaattcagct 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44645044 taagcattacatatgagcttttgccttttcatttatcagacttttaaagggaattcagct 44645103
Query: 854 ttattactctcagtatctgctcacacttctgtatttgtcctaggatgatggagaaaggga 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44645104 ttattactctcagtatctgctcacacttctgtatttgtcctaggatgatggagaaaggga 44645163
Query: 914 aagaccattaattcctaaggaaagactttgtggaagagtaggcagtgtttcgtttttaca 973
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44645164 aagactgttaattcctaaggaaagactttgtggaagagtaggcagtgtttcgtttttaca 44645223
Query: 974 gacttcccctctctgttcagttgataccagttactgatggttacatgtcctggggaa 1030
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 44645224 gacttcccctctctgttcacttgataccagttactgatggtaacatgtcctggggaa 44645280
Score = 402 bits (203), Expect = e-109
Identities = 574/696 (82%), Gaps = 35/696 (5%)
Strand = Plus / Minus
Query: 42 ttgagccttcaggaaagacatggcgactctctggaggctcagtgttctttgcggtgcccg 101
|||||||||||||| ||||||||||||||| |||||| ||||| | | |||||||
Sbjct: 71517505 ttgagccttcaggagcgacatggcgactctccagaggctgagtgtcccctctggtgccca 71517446
Query: 102 aggaggaggagctctggtcctccggacctcagtggtcagacctgctcatgtctcagcatt 161
| ||| || |||| ||||||| ||| |||||||||||||| |||||| ||||||||
Sbjct: 71517445 aagagaag---ctctattcctccgaaccccagtggtcagacctattcatgtttcagcatt 71517389
Query: 162 tctccaggaccgacctaccccgggatggtgtggagtacagcacattcacctgtcacccag 221
|||||||| || ||||| ||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 71517388 tctccaggcccaacctatcccaggatggtgtggaatacagcacattcacctgtcacccag 71517329
Query: 222 ccaccaggctagttccaaggctgcatctctccactggactggtgagagggttgtcagtgt 281
|||||| || ||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 71517328 ccaccattctggttccaaggctccatctctccattggactggtgagagggttgtcagtgt 71517269
Query: 282 tttgctcctgggcctacttccagccgcttatttgaatccttgttctgcgatggactactc 341
|||||||||||| ||||||||||| |||||| |||||||||| || | || |||||||
Sbjct: 71517268 tttgctcctgggtctacttccagctgcttatctgaatccttgctccacattgaactactc 71517209
Query: 342 cctggccgcagccctcactctccatggtcactggggcattggacaagtcgttactgacta 401
|||||| | |||||| ||||||| ||||||||||||| |||||||| || ||||
Sbjct: 71517208 cctggctgaagccctggctctcca--gtcactggggcatgggacaagttatt----acta 71517155
Query: 402 cgtgcgaggggatgcactgcagaaagctgccaaggcaggccttttggcgctctcggcttt 461
||| ||||||||||||||||| ||||||| |||||| ||||| || || | |||||
Sbjct: 71517154 cgtttgaggggatgcactgcaggaagctgctgaggcagccctttcagcactattagcttt 71517095
Query: 462 cacctttgctgggctttgttatttcaactatcatgatgtgggtatctgcaaagctgttgc 521
||| || |||| || |||||||||||||||||||||||||| ||||||
Sbjct: 71517094 cacgttggctgtgc--tgttatttcaactatcatgatgtgggcatctgc----------- 71517048
Query: 522 catgttgtggaagctctgagcttttagagctaataccttgagagttgattgtacacctcc 581
|||||| |||||||| ||||| | |||||||||||| | |||||||||||
Sbjct: 71517047 -----tgtggatgctctgaggttttaaacttaataccttgag----gtctgtacacctcc 71516997
Query: 582 ttgcctctgctctgtcatgccattcagctcacagtaagaaggaaataataga-taagtcc 640
|||||| ||||||| |||||||||| |||||| |||||| ||| ||| ||| || |||
Sbjct: 71516996 ttgcctttgctctgcaatgccattcaactcacaataagaatgaagtaacagattaggtct 71516937
Query: 641 attggtgagacaaacctcttctc---ctaatcagtgggttatttttggaatttaatcttt 697
| | |||||||||| |||||||| ||||||| | |||||||||| |||||||||||||
Sbjct: 71516936 actagtgagacaaatctcttctcctactaatcacttggttatttttagaatttaatcttt 71516877
Query: 698 gaggaaagatttgagaggaatcgtatccaagaaatt 733
|||||||||||||||||||| ||||||||||||||
Sbjct: 71516876 gaggaaagatttgagaggaactgtatccaagaaatt 71516841
Score = 283 bits (143), Expect = 9e-74
Identities = 146/147 (99%)
Strand = Plus / Plus
Query: 229 gctagttccaaggctgcatctctccactggactggtgagagggttgtcagtgttttgctc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44637924 gctagttccaaggctgcatctctccactggactggtgagagggttgtcagtgttttgctc 44637983
Query: 289 ctgggcctacttccagccgcttatttgaatccttgttctgcgatggactactccctggcc 348
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 44637984 ctgggcctacttccagccgcttatttgaatccttgctctgcgatggactactccctggcc 44638043
Query: 349 gcagccctcactctccatggtcactgg 375
|||||||||||||||||||||||||||
Sbjct: 44638044 gcagccctcactctccatggtcactgg 44638070
Score = 228 bits (115), Expect = 5e-57
Identities = 118/119 (99%)
Strand = Plus / Plus
Query: 111 agctctggtcctccggacctcagtggtcagacctgctcatgtctcagcatttctccagga 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44635922 agctctggtcctccggacctcagtggtcagacctgctcatgtctcagcatttctccagga 44635981
Query: 171 ccgacctaccccgggatggtgtggagtacagcacattcacctgtcacccagccaccagg 229
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44635982 ccgacataccccgggatggtgtggagtacagcacattcacctgtcacccagccaccagg 44636040
Score = 204 bits (103), Expect = 7e-50
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 6 gttgtcgtgtgactgcttccgggttgcgggatgaccttgagccttcaggaaagacatggc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44632213 gttgtcgtgtgactgcttccgggttgcgggatgaccttgagccttcaggaaagacatggc 44632272
Query: 66 gactctctggaggctcagtgttctttgcggtgcccgaggaggaggag 112
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 44632273 gactctctggaggctcagtgttctttgcggtccccgaggaggaggag 44632319
Score = 163 bits (82), Expect = 2e-37
Identities = 175/206 (84%)
Strand = Plus / Minus
Query: 811 cttttgccttttcatttatcagacttttaaagggaattcagctttattactctcagtatc 870
|||||| ||||| || ||||| || ||||||||||||||| ||||||||||||||||||
Sbjct: 71516741 cttttgtcttttaatgtatcaaacccttaaagggaattcagttttattactctcagtatc 71516682
Query: 871 tgctcacacttctgtatttgtcctaggatgatggagaaagggaaagaccattaattccta 930
|| |||||| ||||||||||||| |||||||||||| ||||||| || ||| ||
Sbjct: 71516681 caaccaaacttctatatttgtcctagggtgatggagaaagagaaagactgttggttcata 71516622
Query: 931 aggaaagactttgtggaagagtaggcagtgtttcgtttttacagacttcccctctctgtt 990
| |||||||||| ||| | || ||||||||| |||||| || |||| |||||||||||
Sbjct: 71516621 actaaagactttgcagaaaattaagcagtgtttagtttttgcaaactttccctctctgtt 71516562
Query: 991 cagttgataccagttactgatggtta 1016
||||||||||||||||||||||||||
Sbjct: 71516561 cagttgataccagttactgatggtta 71516536
>Sscrofa_Chr04
|| Length = 143465943
Score = 547 bits (276), Expect = e-153
Identities = 429/481 (89%), Gaps = 18/481 (3%)
Strand = Plus / Minus
Query: 83 gtgttctttgcggtgcccgaggaggaggagctctggtcctccggacctcagtggtcagac 142
||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 97293599 gtgttctctgcggtgcctcaggaggaggagctctggtcctccgaacctcagtggtcagat 97293540
Query: 143 ctgctcatgtctcagcatttctccaggaccgacctaccccgggatggtgtggagtacagc 202
|||||||||||||| |||||| || ||||||||||||||| ||||||||
Sbjct: 97293539 ctgctcatgtctcaacatttcccctggaccgacctacccc------------agtacagc 97293492
Query: 203 acattcacctgtcacccagccaccaggctagttccaaggctgcatctctccactggactg 262
|||||||||| ||||||||||||||| || ||||||||||||||||||||| |||| |||
Sbjct: 97293491 acattcacctatcacccagccaccagtcttgttccaaggctgcatctctcccctgggctg 97293432
Query: 263 gtgagagggttgtcagtgttttgctcctgggcctacttccagccgcttatttgaatcctt 322
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 97293431 gtgagagggttgtcactgttttgctcctgggcctacttccagctgcttatttgaatcctt 97293372
Query: 323 gttctgcgatggactactccctggccgcagccctcactctccatggtcactggggcattg 382
| | | ||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 97293371 gctgtacgatggactactctctggccgcagccctcactctccatagtcactggggcattg 97293312
Query: 383 gacaagtcgttactgactacgtgcgaggggatgcactgcagaaagctgccaaggcaggcc 442
||||||||||| || | || ||||||||||||||||||||||||||||||||||||
Sbjct: 97293311 gacaagtcgtt----accatgtttgaggggatgcactgcagaaagctgccaaggcaggcc 97293256
Query: 443 ttttggcgctctcggctttcacctttgctgggctttgttatttcaactatcatgatgtgg 502
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 97293255 ttttggcgctctcggctttcacctttgctgggctttgttatttcaactagtatgaggtgg 97293196
Query: 503 gtatctgcaaagctgttgccatgttgtggaagctctgagcttttagagctaataccttga 562
| |||||||||||| |||||||| ||||||| ||||| ||||||| |||||| |||||
Sbjct: 97293195 gcatctgcaaagctcttgccatgctgtggaa--actgagattttagacctaatatcttga 97293138
Query: 563 g 563
|
Sbjct: 97293137 g 97293137
Score = 345 bits (174), Expect = 3e-92
Identities = 231/249 (92%), Gaps = 2/249 (0%)
Strand = Plus / Minus
Query: 782 actcggtgtaactaagcattacatatgagcttttgccttttcatttatcagacttttaaa 841
|||| ||||| ||||||| |||| |||||||||||||||||||||||| | ||| |||||
Sbjct: 97292672 actcagtgtacctaagcagtacacatgagcttttgccttttcatttattaaactcttaaa 97292613
Query: 842 gggaattcagctttattactctcagtatctgctcacacttctgtatttgtcctaggatga 901
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97292612 gggaattcagcttta--actctcagtatctgctcacacttctgtatttgtcctaggatga 97292555
Query: 902 tggagaaagggaaagaccattaattcctaaggaaagactttgtggaagagtaggcagtgt 961
||||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||
Sbjct: 97292554 tggagaaagggaaagactgttaattcctaaggaaagactttgtggaaaattaggtagtgt 97292495
Query: 962 ttcgtttttacagacttcccctctctgttcagttgataccagttactgatggttacatgt 1021
|| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 97292494 ttagtttttacagccttcccctctctgttcagttgatactagttactgatggttacatgt 97292435
Query: 1022 cctggggaa 1030
||| |||||
Sbjct: 97292434 cctagggaa 97292426
Score = 287 bits (145), Expect = 6e-75
Identities = 188/200 (94%), Gaps = 3/200 (1%)
Strand = Plus / Minus
Query: 551 ctaataccttgagagttgattgtacacctccttgcctctgctctgtcatgccattcagct 610
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 97292873 ctaataccttgagaattgattgtacaccttcttgcctctgctctgtcatgccattcagct 97292814
Query: 611 cacagtaagaaggaaataatagataagtccattggtgagacaaacctcttctcctaatca 670
|||| |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 97292813 cacaataagaaggaaatgacagacaagtccattggtgagacaaacctcttctcctaatca 97292754
Query: 671 gtgggttatttttggaatttaatctttgaggaaagatttgagaggaatcgtatccaagaa 730
||||||||| ||| |||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct: 97292753 gtgggttatattt-gaatttaatctt--aggaaagatttgggaggaattgtatccaagaa 97292697
Query: 731 attgtgagactgagctctca 750
||||||||||||||||||||
Sbjct: 97292696 attgtgagactgagctctca 97292677
>Sscrofa_Chr02
|| Length = 162569375
Score = 537 bits (271), Expect = e-150
Identities = 559/651 (85%), Gaps = 8/651 (1%)
Strand = Plus / Plus
Query: 33 gggatgaccttgagccttcaggaaagacatggcgactctctggaggctcagtgttctttg 92
||||||||||||||||||||| | |||||||||||||||||||||| || || ||
Sbjct: 73879477 gggatgaccttgagccttcagcagccacatggcgactctctggaggctgagcaccctctg 73879536
Query: 93 cggtgcccgaggaggaggagctctggtcctccggacctcagtggtcagacctgctcatgt 152
|| |||| | ||||||||||||| ||||| | ||| | ||||||| ||||||||||||
Sbjct: 73879537 tggggcccaaaaaggaggagctctgttcctctgaaccccggtggtcaaacctgctcatgt 73879596
Query: 153 ctcagcatttctccaggaccgacctaccccgggatggtgtggagtacagcacattcacct 212
|||||||||||||| | ||||||| || ||||||||||||| | ||||||||||||||
Sbjct: 73879597 ctcagcatttctccggagccgaccttccgggggatggtgtggaatgcagcacattcacct 73879656
Query: 213 gtcacccagccaccaggctagttccaaggctgcatctctccactggactggtgagagggt 272
|||||||||||||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct: 73879657 gtcacccagccaccagtctgattccaaggctgcatctctccactggactggcaagagggc 73879716
Query: 273 tgtcagtgttttgctcctgggcctacttccagccgcttatttgaatccttgttctgcgat 332
|||||| |||||||||||||||||| ||||||| ||||||||||||||||| || || ||
Sbjct: 73879717 tgtcagcgttttgctcctgggcctatttccagcggcttatttgaatccttgctcggcaat 73879776
Query: 333 ggactactccctggccgcagccctcactctccatggtcactggggcattggacaagtcgt 392
||||||| | |||||| ||||||||||||||||| ||||||||| || ||||||||| ||
Sbjct: 73879777 ggactaccctctggccacagccctcactctccat-gtcactgggacactggacaagttgt 73879835
Query: 393 tactgactacgtgcgaggggatgcactgcagaaagctgccaaggcaggccttttggcgct 452
| |||| || |||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct: 73879836 t----actatgtcagaggggatgcactgcagaaagctgcccaggcaggccctttggcact 73879891
Query: 453 ctcggctttcacctttgctgggctttgttatttcaactatcatgatgtgggtatctgcaa 512
| |||| ||| ||||||||||||||||||||| ||||| | |||||||| |||||||
Sbjct: 73879892 cctggctctcatctttgctgggctttgttattttaacta-cccgatgtgggcctctgcaa 73879950
Query: 513 agctgttgccatgttgtggaagctctgagcttttagagctaataccttgagagttgattg 572
||||||||| ||| ||||||||||||| |||||||| | ||||||||||| | |
Sbjct: 73879951 agctgttgctatgatgtggaagctctggacttttagactttataccttgagaact--tca 73880008
Query: 573 tacacctccttgcctctgctctgtcatgccattcagctcacagtaagaaggaaataatag 632
|||||||||| ||||||| ||||||||||||||| ||||||| |||| |||||| || ||
Sbjct: 73880009 tacacctcctcgcctctgttctgtcatgccattcggctcacaataaggaggaaagaacag 73880068
Query: 633 ataagtccattggtgagacaaacctcttctcctaatcagtgggttattttt 683
||||||| |||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 73880069 ataagtcaattggtgagacaaacctcttctcccaatcagctggttattttt 73880119
Score = 523 bits (264), Expect = e-146
Identities = 559/652 (85%), Gaps = 9/652 (1%)
Strand = Plus / Plus
Query: 33 gggatgaccttgagccttcaggaaagacatggcgactctctggaggctcagtgttctttg 92
||||||||||||||||||||| | |||||||||||||||||||||| || || ||
Sbjct: 73753927 gggatgaccttgagccttcagcagccacatggcgactctctggaggctgagcaccctctg 73753986
Query: 93 cggtgcccgaggaggaggagctctggtcctccggacctcagtggtcagacctgctcatgt 152
|| |||| | ||||||||||||| ||||| | ||| | ||||||| ||||||||||||
Sbjct: 73753987 tggggcccaaaaaggaggagctctgttcctctgaaccccggtggtcaaacctgctcatgt 73754046
Query: 153 ctcagcatttctccaggaccgacctaccccgggatggtgtggagtacagcacattcacct 212
|||||||||||||| | ||||||| || ||||||||||||| | ||||||||||||||
Sbjct: 73754047 ctcagcatttctccggagccgaccttccgggggatggtgtggaatgcagcacattcacct 73754106
Query: 213 gtcacccagccaccaggctagttccaaggctgcatctctccactggactggtgagagggt 272
|||||||||||||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct: 73754107 gtcacccagccaccagtctgattccaaggctgcatctctccactggactggcaagagggc 73754166
Query: 273 tgtcagtgttttgctcctgggcctacttccagccgcttatttgaatccttgttc-tgcga 331
|||||| |||||||||||||||||| ||||||| ||||||||||||||||| || || |
Sbjct: 73754167 tgtcagcgttttgctcctgggcctatttccagcggcttatttgaatccttgctcgggcaa 73754226
Query: 332 tggactactccctggccgcagccctcactctccatggtcactggggcattggacaagtcg 391
|||||||| | |||||| ||||||||||||||||| ||||||||| || ||||||||| |
Sbjct: 73754227 tggactaccctctggccacagccctcactctccat-gtcactgggacactggacaagttg 73754285
Query: 392 ttactgactacgtgcgaggggatgcactgcagaaagctgccaaggcaggccttttggcgc 451
|| |||| || |||||||||||||||||||||||||| ||||||||| |||||| |
Sbjct: 73754286 tt----actatgtcagaggggatgcactgcagaaagctgcccaggcaggccctttggcac 73754341
Query: 452 tctcggctttcacctttgctgggctttgttatttcaactatcatgatgtgggtatctgca 511
|| |||| ||| ||||||||||||||||||||| ||||| | |||||||| ||||||
Sbjct: 73754342 tcctggctctcatctttgctgggctttgttattttaacta-cccgatgtgggcctctgca 73754400
Query: 512 aagctgttgccatgttgtggaagctctgagcttttagagctaataccttgagagttgatt 571
|||||||||| ||| ||||||||||||| |||||||| | ||||||||||| | |
Sbjct: 73754401 aagctgttgctatgatgtggaagctctggacttttagactttataccttgagaact--tc 73754458
Query: 572 gtacacctccttgcctctgctctgtcatgccattcagctcacagtaagaaggaaataata 631
|||||||||| ||||||| ||||||||||||||| ||||||| |||| |||||| || |
Sbjct: 73754459 atacacctcctcgcctctgttctgtcatgccattcggctcacaataaggaggaaagaaca 73754518
Query: 632 gataagtccattggtgagacaaacctcttctcctaatcagtgggttattttt 683
|||||||| |||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 73754519 gataagtcaattggtgagacaaacctcttctcccaatcagctggttattttt 73754570
Score = 250 bits (126), Expect = 1e-63
Identities = 262/305 (85%), Gaps = 3/305 (0%)
Strand = Plus / Plus
Query: 674 ggttatttttggaatttaatctttgaggaaagatttgagaggaatcgtatccaagaaatt 733
|||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 73754811 ggttatttttagaatttaatctttgaggaaagatttgagaggaattgcatccaagaagtt 73754870
Query: 734 gtgagactgagctctcacaagactc-agtgtctctcagcttttcacgagactcggtgtaa 792
|||||||| |||||| | || ||| ||||||||||| ||| |||||| ||||||
Sbjct: 73754871 gtgagactaagctctgt--attctggagtatctctcagcttctcataagactcagtgtaa 73754928
Query: 793 ctaagcattacatatgagcttttgccttttcatttatcagacttttaaagggaattcagc 852
||||||||| || ||||| |||||||||| | |||||| |||||||| |||||||||||
Sbjct: 73754929 ctaagcattctatgtgagcgtttgccttttaagttatcaaacttttaacgggaattcagc 73754988
Query: 853 tttattactctcagtatctgctcacacttctgtatttgtcctaggatgatggagaaaggg 912
|||||||||||| ||| ||| ||| |||||| ||||||||||||||||||||||||||||
Sbjct: 73754989 tttattactctcggtacctgatcaaacttctatatttgtcctaggatgatggagaaaggg 73755048
Query: 913 aaagaccattaattcctaaggaaagactttgtggaagagtaggcagtgtttcgtttttac 972
|||||| |||| || ||| |||||||||| ||| | |||||||||||| |||||| |
Sbjct: 73755049 aaagactgttaagtcataaataaagactttgcagaaaattaggcagtgtttagtttttgc 73755108
Query: 973 agact 977
|||||
Sbjct: 73755109 agact 73755113
Score = 250 bits (126), Expect = 1e-63
Identities = 262/305 (85%), Gaps = 3/305 (0%)
Strand = Plus / Plus
Query: 674 ggttatttttggaatttaatctttgaggaaagatttgagaggaatcgtatccaagaaatt 733
|||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 73880360 ggttatttttagaatttaatctttgaggaaagatttgagaggaattgcatccaagaagtt 73880419
Query: 734 gtgagactgagctctcacaagactc-agtgtctctcagcttttcacgagactcggtgtaa 792
|||||||| |||||| | || ||| ||||||||||| ||| |||||| ||||||
Sbjct: 73880420 gtgagactaagctctgt--attctggagtatctctcagcttctcataagactcagtgtaa 73880477
Query: 793 ctaagcattacatatgagcttttgccttttcatttatcagacttttaaagggaattcagc 852
||||||||| || ||||| |||||||||| | |||||| |||||||| |||||||||||
Sbjct: 73880478 ctaagcattctatgtgagcgtttgccttttaagttatcaaacttttaacgggaattcagc 73880537
Query: 853 tttattactctcagtatctgctcacacttctgtatttgtcctaggatgatggagaaaggg 912
|||||||||||| ||| ||| ||| |||||| ||||||||||||||||||||||||||||
Sbjct: 73880538 tttattactctcggtacctgatcaaacttctatatttgtcctaggatgatggagaaaggg 73880597
Query: 913 aaagaccattaattcctaaggaaagactttgtggaagagtaggcagtgtttcgtttttac 972
|||||| |||| || ||| |||||||||| ||| | |||||||||||| |||||| |
Sbjct: 73880598 aaagactgttaagtcataaataaagactttgcagaaaattaggcagtgtttagtttttgc 73880657
Query: 973 agact 977
|||||
Sbjct: 73880658 agact 73880662
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,071,492
Number of extensions: 246
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 25
Length of query: 1030
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1009
Effective length of database: 2,808,413,156
Effective search space: 2833688874404
Effective search space used: 2833688874404
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)