Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007882
(1138 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029582.1| C-X-C motif chemokine 14 [Bos taurus]. 177 1e-44
>ref|NP_001029582.1| C-X-C motif chemokine 14 [Bos taurus].
Length = 99
Score = 177 bits (450), Expect = 1e-44
Identities = 81/81 (100%), Positives = 81/81 (100%)
Frame = +2
Query: 326 RVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKSMSRYRGQEHCLHPKLQ 505
RVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKSMSRYRGQEHCLHPKLQ
Sbjct: 19 RVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKSMSRYRGQEHCLHPKLQ 78
Query: 506 STKRFIKWYNAWNEKRRVYEE 568
STKRFIKWYNAWNEKRRVYEE
Sbjct: 79 STKRFIKWYNAWNEKRRVYEE 99
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,261,093
Number of extensions: 1053026
Number of successful extensions: 4717
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4708
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,240,222
Effective search space: 3916061050
Effective search space used: 3916061050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007882
(1138 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852570.1| PREDICTED: similar to small inducible cytokine ... 177 2e-44
>ref|XP_852570.1| PREDICTED: similar to small inducible cytokine B14 precursor [Canis
familiaris].
Length = 387
Score = 177 bits (449), Expect = 2e-44
Identities = 102/193 (52%), Positives = 105/193 (54%), Gaps = 17/193 (8%)
Frame = +2
Query: 41 KRPGRAEGGCGE-----------------SPRASGAXXXXXXXARLPPPGRAQRQRVEPG 169
K RAEGGCGE + ASGA P RA+R P
Sbjct: 219 KEARRAEGGCGERGAERRARRGSPGTTDGAAGASGAGRRAPGTQSRAEPSRAERPAPSPV 278
Query: 170 GALRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRXXXXXXXXXXXXXXXXRVDGSKCK 349
A R MR RVDGSKCK
Sbjct: 279 PAPRRAPPAS------------------------MRLLPAALLLLLLALCAARVDGSKCK 314
Query: 350 CSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKSMSRYRGQEHCLHPKLQSTKRFIKW 529
CSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKS+SRYRGQEHCLHPKLQSTKRFIKW
Sbjct: 315 CSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKSVSRYRGQEHCLHPKLQSTKRFIKW 374
Query: 530 YNAWNEKRRVYEE 568
YNAWNEKRRVYEE
Sbjct: 375 YNAWNEKRRVYEE 387
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,752,812
Number of extensions: 1060401
Number of successful extensions: 4801
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4791
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 275
Effective length of database: 15,407,560
Effective search space: 4237079000
Effective search space used: 4237079000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007882
(1138 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123998.1| PREDICTED: c-X-C motif chemokine 14 [Sus scr... 177 7e-45
>ref|XP_003123998.1| PREDICTED: c-X-C motif chemokine 14 [Sus scrofa].
Length = 99
Score = 177 bits (450), Expect = 7e-45
Identities = 81/81 (100%), Positives = 81/81 (100%)
Frame = +2
Query: 326 RVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKSMSRYRGQEHCLHPKLQ 505
RVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKSMSRYRGQEHCLHPKLQ
Sbjct: 19 RVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKSMSRYRGQEHCLHPKLQ 78
Query: 506 STKRFIKWYNAWNEKRRVYEE 568
STKRFIKWYNAWNEKRRVYEE
Sbjct: 79 STKRFIKWYNAWNEKRRVYEE 99
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,655,555
Number of extensions: 718194
Number of successful extensions: 3025
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3012
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 278
Effective length of database: 8,829,335
Effective search space: 2454555130
Effective search space used: 2454555130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007882
(1138 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062514.2| C-X-C motif chemokine 14 precursor [Mus musculu... 177 1e-44
>ref|NP_062514.2| C-X-C motif chemokine 14 precursor [Mus musculus].
Length = 99
Score = 177 bits (449), Expect = 1e-44
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 326 RVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKSMSRYRGQEHCLHPKLQ 505
RVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVI+TTKSMSRYRGQEHCLHPKLQ
Sbjct: 19 RVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIVTTKSMSRYRGQEHCLHPKLQ 78
Query: 506 STKRFIKWYNAWNEKRRVYEE 568
STKRFIKWYNAWNEKRRVYEE
Sbjct: 79 STKRFIKWYNAWNEKRRVYEE 99
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,565,006
Number of extensions: 848288
Number of successful extensions: 3401
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3385
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 276
Effective length of database: 12,523,851
Effective search space: 3456582876
Effective search space used: 3456582876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007882
(1138 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004878.2| C-X-C motif chemokine 14 precursor [Homo sapien... 176 4e-44
>ref|NP_004878.2| C-X-C motif chemokine 14 precursor [Homo sapiens].
Length = 111
Score = 176 bits (446), Expect = 4e-44
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = +2
Query: 326 RVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKSMSRYRGQEHCLHPKLQ 505
RVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKS+SRYRGQEHCLHPKLQ
Sbjct: 31 RVDGSKCKCSRKGPKIRYSDVKKLEMKPKYPHCEEKMVIITTKSVSRYRGQEHCLHPKLQ 90
Query: 506 STKRFIKWYNAWNEKRRVYEE 568
STKRFIKWYNAWNEKRRVYEE
Sbjct: 91 STKRFIKWYNAWNEKRRVYEE 111
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,813,310
Number of extensions: 1022425
Number of successful extensions: 4350
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4337
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,868,908
Effective search space: 4088949700
Effective search space used: 4088949700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007882
(1138 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 559 e-156
>Sscrofa_Chr02
|| Length = 162569375
Score = 559 bits (282), Expect = e-156
Identities = 285/286 (99%)
Strand = Plus / Plus
Query: 553 cagggtctatgaagaatagggtgaaaaatcccccgagggaaaacgtcacaccggtcagga 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143452348 cagggtctatgaagaatagggtgaaaaatcccccgagggaaaacgtcacaccggtcagga 143452407
Query: 613 gacgagcaaaggactttgccgattaaacaaacaaaccctttctttgtcacaggcataaga 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143452408 gacgagcaaaggactttgccgattaaacaaacaaaccctttctttgtcacaggcataaga 143452467
Query: 673 cacgaattaaacatggttacccagcacttttaccgagggtcggtggttcgttttatagct 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143452468 cacgaattaaacatggttacccagcacttttaccgagggtcggtggttcgttttatagct 143452527
Query: 733 gcgagcaaaaggcttccagatgtgagagccttctctcgcgctccagacaccatcacaagc 792
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 143452528 gcgagcaaaaggcttccagatgtgagagccttctcttgcgctccagacaccatcacaagc 143452587
Query: 793 tgctttttactgaaaaagggggaaaactcatgcatttcctttgttt 838
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143452588 tgctttttactgaaaaagggggaaaactcatgcatttcctttgttt 143452633
Score = 535 bits (270), Expect = e-149
Identities = 273/274 (99%)
Strand = Plus / Plus
Query: 865 ttttttggacttacccagatatcactatacatctgagctttctaagcgcctgggagggca 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143452659 ttttttggacttacccagatatcactatacatctgagctttctaagcgcctgggagggca 143452718
Query: 925 gggagcttgggtgagacactgctcagcagcctggctcccttcccagcaccggaagcttcc 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143452719 gggagcttgggtgagacactgctcagcagcctggctcccttcccagcaccggaagcttcc 143452778
Query: 985 cgcccgggggtcctggggcctcggcccagctgctcccctgggctcacggttggtcactgc 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143452779 cgcccgggggtcctggggcctcggcccagctgctcccctgggctcacggttggtcactgc 143452838
Query: 1045 tacaggggggctcggcagtggcccccagctgccgggcaagcaggaacagatctctccgca 1104
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 143452839 tacaggggggctcggcagtggcccccagctgccgggcaagcaggagcagatctctccgca 143452898
Query: 1105 tctgttctttgaggaactcgagtttggccgcccg 1138
||||||||||||||||||||||||||||||||||
Sbjct: 143452899 tctgttctttgaggaactcgagtttggccgcccg 143452932
Score = 533 bits (269), Expect = e-149
Identities = 314/336 (93%)
Strand = Plus / Plus
Query: 1 ttaatgagctcgctcgaggcgagggcaggagcggatttaaaagaggcctgggcgggcgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143444383 ttaatgagctcgctcgaggcgagggcaggagcggatttaaaagaggcctgggcgggcgga 143444442
Query: 61 gggaggctgtggagagagcccgagagcgagcggagcnnnnnnnnnnnnnnnnnnnnnagc 120
|||||||||||||||||||||||||||||||||||| |||
Sbjct: 143444443 gggaggctgtggagagagcccgagagcgagcggagcgcagcagcagcagcagcagcgagc 143444502
Query: 121 gaggctaccaccgccgggccgggcgcagcggcagcgagtggagccaggaggcgcgctccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143444503 gaggctaccaccgccgggccgggcgcagcggcagcgagtggagccaggaggcgcgctccg 143444562
Query: 181 ggcagaaagagcctgccgcccgccgagccggcgcccgaaagcgcgggcgccctccccgag 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 143444563 ggcagaaagagcctgccgcccgccgagccggcgcccgaaagcgtgggcgccctccccgag 143444622
Query: 241 tccctgctcccgcgccgtggccccggccagcatgaggctcctgacggccgcgctgctcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143444623 tccctgctcccgcgccgtggccccggccagcatgaggctcctgacggccgcgctgctcct 143444682
Query: 301 gctgctcctggcgctgtgtgctgcgcgcgtggacgg 336
||||||||||||||||||||||||||||||||||||
Sbjct: 143444683 gctgctcctggcgctgtgtgctgcgcgcgtggacgg 143444718
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 442 catcaccaccaagagcatgtccaggtaccgaggtcaggagcactgcctgcatcccaagct 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143449203 catcaccaccaagagcatgtccaggtaccgaggtcaggagcactgcctgcatcccaagct 143449262
Query: 502 gcagagcaccaagcggttcatcaagtggtacaacgcctggaatgagaagcgcagg 556
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143449263 gcagagcaccaagcggttcatcaagtggtacaacgcctggaatgagaagcgcagg 143449317
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 335 gggtccaaatgcaagtgctcccggaagggacccaagatccgctacagcgacgtgaagaag 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143444893 gggtccaaatgcaagtgctcccggaagggacccaagatccgctacagcgacgtgaagaag 143444952
Query: 395 ctggaaatgaagccaaagtacccgcactgcgaggagaagatggttat 441
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143444953 ctggaaatgaagccaaagtacccgcactgcgaggagaagatggttat 143444999
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,435,380
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 6
Length of query: 1138
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1117
Effective length of database: 2,808,413,156
Effective search space: 3136997495252
Effective search space used: 3136997495252
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)