Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007883
(1234 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_803468.1| aspartate aminotransferase, cytoplasmic [Bos ta... 742 0.0
Alignment gi|NP_777231.1| aspartate aminotransferase, mitochondrial [Bos ... 350 2e-96
Alignment gi|NP_001033147.1| putative aspartate aminotransferase, cytopla... 301 8e-82
>ref|NP_803468.1| aspartate aminotransferase, cytoplasmic [Bos taurus].
Length = 413
Score = 742 bits (1916), Expect = 0.0
Identities = 360/386 (93%), Positives = 371/386 (96%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
MAPPS+FAEVPQAQPVLVFKL ADFREDPDPRKVNLGVGAYRTDD QPWVLPVVRKVEQR
Sbjct: 1 MAPPSIFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDSQPWVLPVVRKVEQR 60
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFL 435
IANDSS+NHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQ LGGTGALRIGAEFL
Sbjct: 61 IANDSSINHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQCLGGTGALRIGAEFL 120
Query: 436 ARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN 615
ARWYNGTNNKDTPVYVSSPTWENHNGVF AGFKDIRSY YWD KRGLDLQGFL+DLE
Sbjct: 121 ARWYNGTNNKDTPVYVSSPTWENHNGVFIAAGFKDIRSYHYWDAAKRGLDLQGFLNDLEK 180
Query: 616 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA 795
APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQ FASG+LEKDAWA
Sbjct: 181 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQAFASGSLEKDAWA 240
Query: 796 IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPP 975
IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVR+TWSNPP
Sbjct: 241 IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRITWSNPP 300
Query: 976 AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGN 1155
AQGARIVARTLSDPELF+EWTGNVKTMADRIL+MRSELRARLEAL+TPGTWNHIT+Q G
Sbjct: 301 AQGARIVARTLSDPELFNEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITEQIGM 360
Query: 1156 VSFTGVNPQQVEYLIPRKHIYLLPSG 1233
SFTG+NP+QVEYLI KHIYLLPSG
Sbjct: 361 FSFTGLNPKQVEYLINEKHIYLLPSG 386
>ref|NP_777231.1| aspartate aminotransferase, mitochondrial [Bos taurus].
Length = 430
Score = 350 bits (897), Expect = 2e-96
Identities = 179/394 (45%), Positives = 253/394 (64%)
Frame = +1
Query: 52 PADSCSLAMAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLP 231
P + + + S +A V P + + F+ D + +K+NLGVGAYR D+ +P+VLP
Sbjct: 19 PGLAAAASARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLP 78
Query: 232 VVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGA 411
VRK E +IA +L+ EYLPI GLAEF ++ LALG+++ L+ R VQ++ GTGA
Sbjct: 79 SVRKAEAQIAA-KNLDKEYLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGA 137
Query: 412 LRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQ 591
LRIGA FL R++ + + V++ PTW NH +F AG + ++SYRY+D + G D
Sbjct: 138 LRIGASFLQRFFKFSRD----VFLPKPTWGNHTPIFRDAGMQ-LQSYRYYDPKTCGFDFT 192
Query: 592 GFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG 771
G + D+ P S+ +LHACAHNPTG DP PEQWK++A+V+K+ LF FFD AYQGFASG
Sbjct: 193 GAIEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATVVKKNNLFAFFDMAYQGFASG 252
Query: 772 NLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIV 951
+ KDAWA+R+F+ +G + QS++KN GLY ERVG TVV K+ + RV SQ++ ++
Sbjct: 253 DGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILI 312
Query: 952 RVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWN 1131
R +SNPP GARI + L+ P+L +W VK MADRI+SMR++L + L+ + W
Sbjct: 313 RPMYSNPPINGARIASTILTSPDLRKQWLHEVKGMADRIISMRTQLVSNLKKEGSSHNWQ 372
Query: 1132 HITDQNGNVSFTGVNPQQVEYLIPRKHIYLLPSG 1233
HI DQ G +TG+ P+QVE L IY+ G
Sbjct: 373 HIIDQIGMFCYTGLKPEQVERLTKEFSIYMTKDG 406
>ref|NP_001033147.1| putative aspartate aminotransferase, cytoplasmic 2 [Bos taurus].
Length = 407
Score = 301 bits (771), Expect = 8e-82
Identities = 154/382 (40%), Positives = 230/382 (60%)
Frame = +1
Query: 88 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAND 267
SVF +VP AQ L L+ +++D +P K+ L T +PWV VVRK +IA D
Sbjct: 5 SVFTDVPMAQK-LEGSLLKTYKQDDNPNKMFLAYKVCMTSKGRPWVSSVVRKTRMQIAQD 63
Query: 268 SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 447
SLN+EY P++G+ F + L G +S + E R GGVQ++G +GA ++GA+FL W
Sbjct: 64 PSLNYEYTPVMGMKSFVQASLNLLFGKNSQVIVENRAGGVQTVGDSGAFQLGAQFLKSWC 123
Query: 448 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 627
+ VY+ S E H +F GF + + +WD+ LD L +++AP
Sbjct: 124 QSSQI----VYIVSSQKEPHGLIFQDMGFT-VYEHTFWDSAHLCLDPNMLLDVVKHAPHG 178
Query: 628 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 807
+FV+ + + TP QW Q+ ++MK + +FPFFD YQG ++G+LE+DA + YF
Sbjct: 179 CVFVIGSMGN----CQLTPSQWTQLMTLMKSKEIFPFFDIPYQGLSTGDLEEDARFLHYF 234
Query: 808 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPPAQGA 987
VS+GFE FC+QS SKNFG+Y+E VG L VV + +LRVLSQ+ R W NPP GA
Sbjct: 235 VSQGFEFFCSQSLSKNFGIYDEGVGTLVVVTLDNQLLLRVLSQLMNFARALWLNPPTTGA 294
Query: 988 RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGNVSFT 1167
RI+ L +P + EW +++ + + ++ + +++ +L L TPG+W+HIT+Q G+ S+
Sbjct: 295 RIITSVLCNPAMQGEWRQSLEGVVENVMMTKEKVKEKLRLLGTPGSWDHITEQKGSHSYL 354
Query: 1168 GVNPQQVEYLIPRKHIYLLPSG 1233
G+N QQVEYLI KHIY+ +G
Sbjct: 355 GLNSQQVEYLISEKHIYIPKNG 376
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,493,327
Number of extensions: 1417342
Number of successful extensions: 5086
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5078
Number of HSP's successfully gapped: 3
Length of query: 411
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 306
Effective length of database: 14,207,134
Effective search space: 4347383004
Effective search space used: 4347383004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007883
(1234 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543963.1| PREDICTED: similar to aspartate aminotransferas... 736 0.0
Alignment gi|XP_861285.1| PREDICTED: similar to aspartate aminotransferas... 692 0.0
Alignment gi|XP_535278.2| PREDICTED: similar to Aspartate aminotransferas... 352 3e-97
Alignment gi|XP_851273.1| PREDICTED: similar to Aspartate aminotransferas... 345 4e-95
Alignment gi|XP_863389.1| PREDICTED: similar to Aspartate aminotransferas... 324 1e-88
Alignment gi|XP_532809.2| PREDICTED: similar to CG8430-PB, isoform B [Can... 290 1e-78
Alignment gi|XP_851350.1| PREDICTED: similar to Aspartate aminotransferas... 58 2e-08
>ref|XP_543963.1| PREDICTED: similar to aspartate aminotransferase 1 isoform 1 [Canis
familiaris].
Length = 413
Score = 736 bits (1900), Expect = 0.0
Identities = 355/386 (91%), Positives = 370/386 (95%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
MAPPSVFAEVPQAQPVLVFKL ADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQ+
Sbjct: 1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQK 60
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFL 435
IAND SLNHEYLPILGLAEFRTCASRL LGDDSPALQEKRVGGVQSLGGTGALRIGAEFL
Sbjct: 61 IANDHSLNHEYLPILGLAEFRTCASRLVLGDDSPALQEKRVGGVQSLGGTGALRIGAEFL 120
Query: 436 ARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN 615
ARWYNGTNNKDTPVYVSSPTWENHNGVF+ AGFKDIRSY YWD KRGLDLQGFL+DLEN
Sbjct: 121 ARWYNGTNNKDTPVYVSSPTWENHNGVFSAAGFKDIRSYHYWDEAKRGLDLQGFLNDLEN 180
Query: 616 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA 795
APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG+LEKDAWA
Sbjct: 181 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGDLEKDAWA 240
Query: 796 IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPP 975
+RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAK+ DSILRVLSQMEKIVR+TWSNPP
Sbjct: 241 VRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKDADSILRVLSQMEKIVRITWSNPP 300
Query: 976 AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGN 1155
AQGARIVA TLS+PELF EWTGNVKTMADRIL+MRS+LR RLEAL+TPGTWNHIT+Q G
Sbjct: 301 AQGARIVASTLSNPELFKEWTGNVKTMADRILTMRSKLRERLEALKTPGTWNHITEQIGM 360
Query: 1156 VSFTGVNPQQVEYLIPRKHIYLLPSG 1233
SFTG+NP+QVEYL+ KHIYLLPSG
Sbjct: 361 FSFTGLNPKQVEYLVNEKHIYLLPSG 386
>ref|XP_861285.1| PREDICTED: similar to aspartate aminotransferase 1 isoform 2 [Canis
familiaris].
Length = 394
Score = 692 bits (1786), Expect = 0.0
Identities = 338/386 (87%), Positives = 351/386 (90%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
MAPPSVFAEVPQAQPVLVFKL ADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQ+
Sbjct: 1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQK 60
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFL 435
IAND SLNHEYLPILGLAEFRTCASRL LGDDSPALQEKRVGGVQSLGGTGALRIGAEFL
Sbjct: 61 IANDHSLNHEYLPILGLAEFRTCASRLVLGDDSPALQEKRVGGVQSLGGTGALRIGAEFL 120
Query: 436 ARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN 615
ARWYNGTNNKDTPVYVSSPTWENHNGVF+ AGFKDIRSY YWD KRGLDLQGFL+DLEN
Sbjct: 121 ARWYNGTNNKDTPVYVSSPTWENHNGVFSAAGFKDIRSYHYWDEAKRGLDLQGFLNDLEN 180
Query: 616 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA 795
APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG+LEKDAWA
Sbjct: 181 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGDLEKDAWA 240
Query: 796 IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPP 975
+RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAK+ DSILRVLSQMEKIVR+TWSNPP
Sbjct: 241 VRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKDADSILRVLSQMEKIVRITWSNPP 300
Query: 976 AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGN 1155
AQGARIVA TLS+PELF EW RLEAL+TPGTWNHIT+Q G
Sbjct: 301 AQGARIVASTLSNPELFKEW-------------------ERLEALKTPGTWNHITEQIGM 341
Query: 1156 VSFTGVNPQQVEYLIPRKHIYLLPSG 1233
SFTG+NP+QVEYL+ KHIYLLPSG
Sbjct: 342 FSFTGLNPKQVEYLVNEKHIYLLPSG 367
>ref|XP_535278.2| PREDICTED: similar to Aspartate aminotransferase, mitochondrial
precursor (Transaminase A) (Glutamate oxaloacetate
transaminase-2) [Canis familiaris].
Length = 570
Score = 352 bits (904), Expect = 3e-97
Identities = 179/382 (46%), Positives = 248/382 (64%)
Frame = +1
Query: 88 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAND 267
S + V P + + F+ D + +K+NLGVGAYR D+ +P+VLP VRK E +IA
Sbjct: 171 SWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA- 229
Query: 268 SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 447
+L+ EYLPI GLAEF ++ LALG+++ L+ R VQ++ GTGALRIGA FL R++
Sbjct: 230 KNLDKEYLPIAGLAEFCKASAELALGENNEVLKSSRYVTVQTISGTGALRIGASFLQRFF 289
Query: 448 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 627
+ + V++ P+W NH +F AG + + YRY+D + G D G + D+ P+
Sbjct: 290 KFSQD----VFLPKPSWGNHTPIFRDAGMQ-LHGYRYYDPKTCGFDFTGAIEDISKMPQQ 344
Query: 628 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 807
S+ +LHACAHNPTG DP PEQWK+IA+V+K+ LF FFD AYQGFASG+ KDAWA+R+F
Sbjct: 345 SVLLLHACAHNPTGVDPRPEQWKEIATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHF 404
Query: 808 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPPAQGA 987
+ +G + QS++KN GLY ERVG TVV K+ D RV SQ++ ++R +SNPP GA
Sbjct: 405 IEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDADEAKRVESQLKILIRPMYSNPPINGA 464
Query: 988 RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGNVSFT 1167
RI + L+ P+L +W VK MADRI+SMR++L + L+ + W HITDQ G FT
Sbjct: 465 RIASTILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFT 524
Query: 1168 GVNPQQVEYLIPRKHIYLLPSG 1233
G+ P+QVE L IY+ G
Sbjct: 525 GLKPEQVERLTKEFSIYMTKDG 546
>ref|XP_851273.1| PREDICTED: similar to Aspartate aminotransferase, mitochondrial
precursor (Transaminase A) (Glutamate oxaloacetate
transaminase-2) isoform 2 [Canis familiaris].
Length = 393
Score = 345 bits (886), Expect = 4e-95
Identities = 174/367 (47%), Positives = 242/367 (65%)
Frame = +1
Query: 88 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAND 267
S + V P + + F+ D + +K+NLGVGAYR D+ +P+VLP VRK E +IA
Sbjct: 31 SWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA- 89
Query: 268 SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 447
+L+ EYLPI GLAEF ++ LALG+++ L+ R VQ++ GTGALRIGA FL R++
Sbjct: 90 KNLDKEYLPIAGLAEFCKASAELALGENNEVLKSSRYVTVQTISGTGALRIGASFLQRFF 149
Query: 448 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 627
+ + V++ P+W NH +F AG + + YRY+D + G D G + D+ P+
Sbjct: 150 KFSQD----VFLPKPSWGNHTPIFRDAGMQ-LHGYRYYDPKTCGFDFTGAIEDISKMPQQ 204
Query: 628 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 807
S+ +LHACAHNPTG DP PEQWK+IA+V+K+ LF FFD AYQGFASG+ KDAWA+R+F
Sbjct: 205 SVLLLHACAHNPTGVDPRPEQWKEIATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHF 264
Query: 808 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPPAQGA 987
+ +G + QS++KN GLY ERVG TVV K+ D RV SQ++ ++R +SNPP GA
Sbjct: 265 IEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDADEAKRVESQLKILIRPMYSNPPINGA 324
Query: 988 RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGNVSFT 1167
RI + L+ P+L +W VK MADRI+SMR++L + L+ + W HITDQ G FT
Sbjct: 325 RIASTILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFT 384
Query: 1168 GVNPQQV 1188
G+ P+QV
Sbjct: 385 GLKPEQV 391
>ref|XP_863389.1| PREDICTED: similar to Aspartate aminotransferase, mitochondrial
precursor (Transaminase A) (Glutamate oxaloacetate
transaminase-2) isoform 3 [Canis familiaris].
Length = 394
Score = 324 bits (830), Expect = 1e-88
Identities = 169/375 (45%), Positives = 233/375 (62%)
Frame = +1
Query: 88 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAND 267
S + V P + + F+ D + +K+NLGVGAYR D+ +P+VLP VRK E +IA
Sbjct: 31 SWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA- 89
Query: 268 SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 447
+L+ EYLPI GLAEF ++ LALG+++ L+ R VQ++ GTGALRIGA FL R++
Sbjct: 90 KNLDKEYLPIAGLAEFCKASAELALGENNEVLKSSRYVTVQTISGTGALRIGASFLQRFF 149
Query: 448 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 627
+ + V++ P+W NH +F AG + + YRY+D + G D G + D+ P+
Sbjct: 150 KFSQD----VFLPKPSWGNHTPIFRDAGMQ-LHGYRYYDPKTCGFDFTGAIEDISKMPQQ 204
Query: 628 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 807
S+ +LHACAHNPTG DP PEQWK+IA+V+K+ LF FFD AYQGFASG+ KDAWA+R+F
Sbjct: 205 SVLLLHACAHNPTGVDPRPEQWKEIATVVKKNNLFAFFDMAYQGFASGDGNKDAWAVRHF 264
Query: 808 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPPAQGA 987
+ +G + QS++KN GLY ERVG TVV K+ D RV SQ++ ++R +SNPP GA
Sbjct: 265 IEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDADEAKRVESQLKILIRPMYSNPPINGA 324
Query: 988 RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGNVSFT 1167
RI + L+ P+L +W VK MADRI+SMR L T ++G +S
Sbjct: 325 RIASTILTSPDLRKQWLQEVKGMADRIISMRERLTKEFSIYMT---------KDGRISVA 375
Query: 1168 GVNPQQVEYLIPRKH 1212
GV V YL H
Sbjct: 376 GVTSGNVGYLAHAIH 390
>ref|XP_532809.2| PREDICTED: similar to CG8430-PB, isoform B [Canis familiaris].
Length = 406
Score = 290 bits (743), Expect = 1e-78
Identities = 156/383 (40%), Positives = 231/383 (60%), Gaps = 1/383 (0%)
Frame = +1
Query: 88 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAND 267
SVF +VP AQ L L+ +++D P+K+ L T + QPWV VV K+ +I+ D
Sbjct: 5 SVFLDVPLAQK-LEGSLLKTYKQDDCPKKIFLAYRVCMTTEGQPWVSSVVPKIRLQISQD 63
Query: 268 SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 447
SLN+EY+P++G+ F + +L G + + E RVGGV ++G GA ++GA+FL W
Sbjct: 64 PSLNYEYMPMMGMKSFMEASLKLLFGKYNQVIVENRVGGVHTVGDNGAFQLGAQFLKIW- 122
Query: 448 NGTNNKDTP-VYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE 624
KD+ VY+ S E+H VF GF + Y WD+++ +D L E AP
Sbjct: 123 ----RKDSRIVYIISSKKESHGLVFQDMGFT-VCEYSLWDSKQLCMDPNVLLDVAEQAPH 177
Query: 625 FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRY 804
IFV+ N T QW ++ + MK + +FPFFD YQG ++GNLE+D ++Y
Sbjct: 178 GCIFVIG----NIGDCKLTQSQWARLIASMKSKQIFPFFDIPYQGLSTGNLEEDTGFLQY 233
Query: 805 FVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPPAQG 984
FVS+ FE FC+QS SK FG+Y+E VG L VVA +L VLSQ+ + + W NPP +G
Sbjct: 234 FVSQDFEFFCSQSLSKIFGIYDEGVGVLVVVALNNQLLLCVLSQLMNLTQALWLNPPTRG 293
Query: 985 ARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGNVSF 1164
ARI+ L +P L EW ++K + + I+ ++ +++ +L L TPG+W+HITDQNG S+
Sbjct: 294 ARIITSILCNPALQGEWKQSLKELVENIMLIKEKVKEKLRLLGTPGSWDHITDQNGPQSY 353
Query: 1165 TGVNPQQVEYLIPRKHIYLLPSG 1233
G+N Q+VEYL+ +KHIY+ +G
Sbjct: 354 LGLNSQKVEYLVKKKHIYIPKNG 376
>ref|XP_851350.1| PREDICTED: similar to Aspartate aminotransferase, mitochondrial
precursor (Transaminase A) (Glutamate oxaloacetate
transaminase-2) [Canis familiaris].
Length = 123
Score = 58.2 bits (139), Expect = 2e-08
Identities = 36/119 (30%), Positives = 59/119 (49%)
Frame = +1
Query: 748 AYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRV 927
A QGFA+ + KDAW + +F+ +G + QS++K GL E +G TVV+K+ D R
Sbjct: 2 ASQGFANSDGNKDAWTVCHFMEQGINVGPCQSYAKIMGLSGEHMGAFTVVSKDADEARRP 61
Query: 928 LSQMEKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLE 1104
P G +I + P+L + VK +AD++ M ++L + L+
Sbjct: 62 F--------------PISGGQIALTIQTSPDLQKQRWQEVKGLADQVPIMWTQLVSSLK 106
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,789,682
Number of extensions: 1463702
Number of successful extensions: 5331
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5307
Number of HSP's successfully gapped: 7
Length of query: 411
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 306
Effective length of database: 15,374,224
Effective search space: 4704512544
Effective search space used: 4704512544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007883
(1234 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999092.1| aspartate aminotransferase, cytoplasmic [Sus sc... 775 0.0
Alignment gi|NP_999093.1| aspartate aminotransferase, mitochondrial [Sus ... 349 2e-96
>ref|NP_999092.1| aspartate aminotransferase, cytoplasmic [Sus scrofa].
Length = 413
Score = 775 bits (2001), Expect = 0.0
Identities = 378/386 (97%), Positives = 381/386 (98%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR
Sbjct: 1 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 60
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFL 435
IANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFL
Sbjct: 61 IANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFL 120
Query: 436 ARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN 615
ARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN
Sbjct: 121 ARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN 180
Query: 616 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA 795
APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA
Sbjct: 181 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA 240
Query: 796 IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPP 975
IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPP
Sbjct: 241 IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPP 300
Query: 976 AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGN 1155
AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL+TPGTWNHITDQ G
Sbjct: 301 AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGM 360
Query: 1156 VSFTGVNPQQVEYLIPRKHIYLLPSG 1233
SFTG+NP+QVEYLI KHIYLLPSG
Sbjct: 361 FSFTGLNPKQVEYLINEKHIYLLPSG 386
>ref|NP_999093.1| aspartate aminotransferase, mitochondrial [Sus scrofa].
Length = 430
Score = 349 bits (896), Expect = 2e-96
Identities = 179/394 (45%), Positives = 252/394 (63%)
Frame = +1
Query: 52 PADSCSLAMAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLP 231
P + + + S +A V P + + F+ D + +K+NLGVGAYR D+ +P+VLP
Sbjct: 19 PGLAAAASARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLP 78
Query: 232 VVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGA 411
VRK E +IA +L+ EYLPI GLAEF ++ LALG+++ L+ R VQ++ GTGA
Sbjct: 79 SVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGA 137
Query: 412 LRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQ 591
LRIGA FL R++ + + V++ P+W NH +F AG + + SYRY+D + G D
Sbjct: 138 LRIGANFLQRFFKFSRD----VFLPKPSWGNHTPIFRDAGMQ-LHSYRYYDPKTCGFDFT 192
Query: 592 GFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG 771
G L D+ P S+ +LHACAHNPTG DP PEQWK++A+++K+ LF FFD AYQGFASG
Sbjct: 193 GALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKKNNLFAFFDMAYQGFASG 252
Query: 772 NLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIV 951
+ KDAWA+R+F+ +G + QS++KN GLY ERVG TVV K+ + RV SQ++ ++
Sbjct: 253 DGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILI 312
Query: 952 RVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWN 1131
R +SNPP GARI + L+ P+L +W VK MADRI+SMR++L + L+ + W
Sbjct: 313 RPMYSNPPVNGARIASTILTSPDLRQQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQ 372
Query: 1132 HITDQNGNVSFTGVNPQQVEYLIPRKHIYLLPSG 1233
HI DQ G FTG+ P+QVE L IY+ G
Sbjct: 373 HIVDQIGMFCFTGIKPEQVERLTKEFSIYMTKDG 406
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,602,915
Number of extensions: 917820
Number of successful extensions: 3359
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3351
Number of HSP's successfully gapped: 2
Length of query: 411
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 310
Effective length of database: 8,829,335
Effective search space: 2737093850
Effective search space used: 2737093850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007883
(1234 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034454.2| aspartate aminotransferase, cytoplasmic [Mus mu... 704 0.0
Alignment gi|NP_034455.1| aspartate aminotransferase, mitochondrial [Mus ... 355 4e-98
Alignment gi|XP_003086836.1| PREDICTED: aspartate aminotransferase, cytop... 293 2e-79
Alignment gi|NP_083950.1| putative aspartate aminotransferase, cytoplasmi... 268 6e-72
>ref|NP_034454.2| aspartate aminotransferase, cytoplasmic [Mus musculus].
Length = 413
Score = 704 bits (1816), Expect = 0.0
Identities = 337/386 (87%), Positives = 364/386 (94%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
MAPPSVFA+VPQA PVLVFKL ADFR+DPDPRKVNLGVGAYRTD+ QPWVLPVVRKVEQ+
Sbjct: 1 MAPPSVFAQVPQAPPVLVFKLTADFRDDPDPRKVNLGVGAYRTDESQPWVLPVVRKVEQK 60
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFL 435
IAND+SLNHEYLPILGLAEFR+CASRL LGD+S A++E RVGGVQSLGGTGALRIGA+FL
Sbjct: 61 IANDNSLNHEYLPILGLAEFRSCASRLVLGDNSLAIRENRVGGVQSLGGTGALRIGADFL 120
Query: 436 ARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN 615
RWYNGT+NK+TP+YVSSPTWENHN VF+ AGFKDIR Y YWD EKRGLDLQGFL+DLEN
Sbjct: 121 GRWYNGTDNKNTPIYVSSPTWENHNAVFSAAGFKDIRPYCYWDAEKRGLDLQGFLNDLEN 180
Query: 616 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA 795
APEFSIFVLHACAHNPTGTDPTPEQWKQIA+VM+RRFLFPFFDSAYQGFASG+LEKDAWA
Sbjct: 181 APEFSIFVLHACAHNPTGTDPTPEQWKQIAAVMQRRFLFPFFDSAYQGFASGDLEKDAWA 240
Query: 796 IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPP 975
IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVV KE DS+LRVLSQMEKIVR+TWSNPP
Sbjct: 241 IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVGKESDSVLRVLSQMEKIVRITWSNPP 300
Query: 976 AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGN 1155
AQGARIVA TLSDPELF EW GNVKTMADRIL+MRSELRARLEAL+TPGTW+HIT+Q G
Sbjct: 301 AQGARIVAATLSDPELFKEWKGNVKTMADRILTMRSELRARLEALKTPGTWSHITEQIGM 360
Query: 1156 VSFTGVNPQQVEYLIPRKHIYLLPSG 1233
SFTG+NP+QVEYL+ KHIYLLPSG
Sbjct: 361 FSFTGLNPKQVEYLVNEKHIYLLPSG 386
>ref|NP_034455.1| aspartate aminotransferase, mitochondrial [Mus musculus].
Length = 430
Score = 355 bits (911), Expect = 4e-98
Identities = 181/394 (45%), Positives = 255/394 (64%)
Frame = +1
Query: 52 PADSCSLAMAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLP 231
P + + + S + V P + + F+ D + +K+NLGVGAYR D+ +P+VLP
Sbjct: 19 PGLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLP 78
Query: 232 VVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGA 411
VRK E +IA +L+ EYLPI GLAEF ++ LALG+++ L+ R VQ++ GTGA
Sbjct: 79 SVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGA 137
Query: 412 LRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQ 591
LR+GA FL R++ + + V++ P+W NH +F AG + ++ YRY+D + G D
Sbjct: 138 LRVGASFLQRFFKFSRD----VFLPKPSWGNHTPIFRDAGMQ-LQGYRYYDPKTCGFDFS 192
Query: 592 GFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG 771
G L D+ PE S+ +LHACAHNPTG DP PEQWK+IASV+K++ LF FFD AYQGFASG
Sbjct: 193 GALEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVKKKNLFAFFDMAYQGFASG 252
Query: 772 NLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIV 951
+ +KDAWA+R+F+ +G + QS++KN GLY ERVG TVV K+ + RV SQ++ ++
Sbjct: 253 DGDKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVCKDAEEAKRVESQLKILI 312
Query: 952 RVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWN 1131
R +SNPP GARI A L+ P+L +W VK MADRI+SMR++L + L+ + W
Sbjct: 313 RPLYSNPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQ 372
Query: 1132 HITDQNGNVSFTGVNPQQVEYLIPRKHIYLLPSG 1233
HITDQ G FTG+ P+QVE L +Y+ G
Sbjct: 373 HITDQIGMFCFTGLKPEQVERLTKEFSVYMTKDG 406
>ref|XP_003086836.1| PREDICTED: aspartate aminotransferase, cytoplasmic-like, partial [Mus
musculus].
Length = 318
Score = 293 bits (750), Expect = 2e-79
Identities = 151/292 (51%), Positives = 195/292 (66%), Gaps = 6/292 (2%)
Frame = +1
Query: 376 VGGVQSLGGTGALRIGAEFLARWYN--GTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRS 549
V +Q++ GTGA +G FL+R+YN G +K VY+S+PTW NHN +F+ G I
Sbjct: 1 VASIQTISGTGACHLGGLFLSRFYNPYGDASKKPTVYLSNPTWANHNQIFSNVGLP-IAQ 59
Query: 550 YRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFL 729
Y Y+D + +GLD+ G L +APE SI +LHACAHNPTG DPT QW++IA +M +
Sbjct: 60 YPYFDQKTKGLDIDGMKKALSDAPERSIILLHACAHNPTGVDPTLAQWREIAEIMAAKGH 119
Query: 730 FPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVV-AKE 906
FPFFD+AYQGFASG+L++DA AIR FV GFEL AQSF+KNFGLY +R G + A
Sbjct: 120 FPFFDTAYQGFASGDLDRDASAIRLFVELGFELVVAQSFAKNFGLYGQRAGCFHFISAPS 179
Query: 907 PDS---ILRVLSQMEKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSM 1077
PD+ RV SQ+ + R SNPP GA++ + L+DP LF EW N++TM+ RI+ M
Sbjct: 180 PDAASITTRVASQLTLLQRSEISNPPIYGAKVASIVLNDPALFAEWKENLRTMSGRIIDM 239
Query: 1078 RSELRARLEALQTPGTWNHITDQNGNVSFTGVNPQQVEYLIPRKHIYLLPSG 1233
R LRA+LE L TPG WNHITDQ G SFTG+N +QV L HIY+ +G
Sbjct: 240 RKALRAKLEELGTPGPWNHITDQIGMFSFTGLNEKQVAKLREEFHIYMTKNG 291
>ref|NP_083950.1| putative aspartate aminotransferase, cytoplasmic 2 [Mus musculus].
Length = 404
Score = 268 bits (685), Expect = 6e-72
Identities = 152/382 (39%), Positives = 219/382 (57%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
M SVF +VP AQ L L+ +R+D P K+ L T++ PWV VV K +
Sbjct: 1 MTSLSVFRDVPTAQK-LEGSLLKIYRQDGYPSKLFLAYKVCMTEEGHPWVSLVVHKTRLQ 59
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFL 435
IA D SL++EYLP++GL F + L G S A+ EKRVGGV +G +GA ++GA+FL
Sbjct: 60 IAEDPSLDYEYLPLVGLKSFIQSSLELLFGKHSEAIAEKRVGGVHIVGESGAFQLGAQFL 119
Query: 436 ARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN 615
W V + S E +F GF + Y W+ D F+ L++
Sbjct: 120 KTWRKNVKI----VCIVSCQKEQCGLIFQDMGFI-VYEYSIWNASDLCSDPSMFVEVLQH 174
Query: 616 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA 795
P SI V+ N T T QW ++ S++K + +FPFFD QG ++G+LE+D
Sbjct: 175 IPVGSILVIG----NITDCKFTQNQWTKLMSIIKSKQIFPFFDIPCQGLSTGDLEEDTKI 230
Query: 796 IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPP 975
++YFVS G E FC+QS SKNFG+Y+E VG L V A +L VLSQ+ V+ W NPP
Sbjct: 231 LQYFVSLGLEFFCSQSLSKNFGIYDEGVGILVVAALSNQHLLCVLSQLMDYVQALWGNPP 290
Query: 976 AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGN 1155
A GARI+ L +P LF EW ++K + + ++ ++ +++ +L L TPG+W+HIT Q+G
Sbjct: 291 ATGARIITSILCNPALFGEWKQSLKGVVENMMLIKEKVKEKLRLLGTPGSWDHITRQSGT 350
Query: 1156 VSFTGVNPQQVEYLIPRKHIYL 1221
+ G+ QQVE+L+ +KHIYL
Sbjct: 351 HGYLGLTYQQVEFLVKKKHIYL 372
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,624,205
Number of extensions: 1197803
Number of successful extensions: 4172
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4159
Number of HSP's successfully gapped: 4
Length of query: 411
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 307
Effective length of database: 12,493,815
Effective search space: 3835601205
Effective search space used: 3835601205
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007883
(1234 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002070.1| aspartate aminotransferase, cytoplasmic [Homo s... 729 0.0
Alignment gi|NP_002071.2| aspartate aminotransferase, mitochondrial precu... 358 6e-99
Alignment gi|NP_689626.2| putative aspartate aminotransferase, cytoplasmi... 281 1e-75
>ref|NP_002070.1| aspartate aminotransferase, cytoplasmic [Homo sapiens].
Length = 413
Score = 729 bits (1882), Expect = 0.0
Identities = 350/386 (90%), Positives = 369/386 (95%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
MAPPSVFAEVPQAQPVLVFKL ADFREDPDPRKVNLGVGAYRTDDC PWVLPVV+KVEQ+
Sbjct: 1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQK 60
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFL 435
IAND+SLNHEYLPILGLAEFR+CASRLALGDDSPAL+EKRVGGVQSLGGTGALRIGA+FL
Sbjct: 61 IANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFL 120
Query: 436 ARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN 615
ARWYNGTNNK+TPVYVSSPTWENHN VF+ AGFKDIRSYRYWD EKRGLDLQGFL+DLEN
Sbjct: 121 ARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLEN 180
Query: 616 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWA 795
APEFSI VLHACAHNPTG DPTPEQWKQIASVMK RFLFPFFDSAYQGFASGNLE+DAWA
Sbjct: 181 APEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWA 240
Query: 796 IRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPP 975
IRYFVSEGFE FCAQSFSKNFGLYNERVGNLTVV KEP+SIL+VLSQMEKIVR+TWSNPP
Sbjct: 241 IRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPP 300
Query: 976 AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGN 1155
AQGARIVA TLS+PELF EWTGNVKTMADRIL+MRSELRARLEAL+TPGTWNHITDQ G
Sbjct: 301 AQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGM 360
Query: 1156 VSFTGVNPQQVEYLIPRKHIYLLPSG 1233
SFTG+NP+QVEYL+ KHIYLLPSG
Sbjct: 361 FSFTGLNPKQVEYLVNEKHIYLLPSG 386
>ref|NP_002071.2| aspartate aminotransferase, mitochondrial precursor [Homo sapiens].
Length = 430
Score = 358 bits (919), Expect = 6e-99
Identities = 184/394 (46%), Positives = 255/394 (64%)
Frame = +1
Query: 52 PADSCSLAMAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLP 231
P + + + S + V P + + F+ D + +K+NLGVGAYR D+ +P+VLP
Sbjct: 19 PGLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLP 78
Query: 232 VVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGA 411
VRK E +IA +L+ EYLPI GLAEF ++ LALG++S L+ R VQ++ GTGA
Sbjct: 79 SVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGA 137
Query: 412 LRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQ 591
LRIGA FL R++ + + V++ PTW NH +F AG + ++ YRY+D + G D
Sbjct: 138 LRIGASFLQRFFKFSRD----VFLPKPTWGNHTPIFRDAGMQ-LQGYRYYDPKTCGFDFT 192
Query: 592 GFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG 771
G + D+ PE S+ +LHACAHNPTG DP PEQWK+IA+V+K+R LF FFD AYQGFASG
Sbjct: 193 GAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLFAFFDMAYQGFASG 252
Query: 772 NLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIV 951
+ +KDAWA+R+F+ +G + QS++KN GLY ERVG T+V K+ D RV SQ++ ++
Sbjct: 253 DGDKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTMVCKDADEAKRVESQLKILI 312
Query: 952 RVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWN 1131
R +SNPP GARI A L+ P+L +W VK MADRI+ MR++L + L+ + W
Sbjct: 313 RPMYSNPPLNGARIAAAILNTPDLRKQWLQEVKVMADRIIGMRTQLVSNLKKEGSTHNWQ 372
Query: 1132 HITDQNGNVSFTGVNPQQVEYLIPRKHIYLLPSG 1233
HITDQ G FTG+ P+QVE LI IY+ G
Sbjct: 373 HITDQIGMFCFTGLKPEQVERLIKEFSIYMTKDG 406
>ref|NP_689626.2| putative aspartate aminotransferase, cytoplasmic 2 [Homo sapiens].
Length = 421
Score = 281 bits (718), Expect = 1e-75
Identities = 150/382 (39%), Positives = 222/382 (58%)
Frame = +1
Query: 88 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAND 267
SVF +VP A L L+ +++D P K+ L T++ PWV VV+K +I+ D
Sbjct: 5 SVFMDVPLAHK-LEGSLLKTYKQDDYPNKIFLAYRVCMTNEGHPWVSLVVQKTRLQISQD 63
Query: 268 SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY 447
SLN+EYLP +GL F + L G S A+ E RVGGV ++G +GA ++G +FL W+
Sbjct: 64 PSLNYEYLPTMGLKSFIQASLALLFGKHSQAIVENRVGGVHTVGDSGAFQLGVQFLRAWH 123
Query: 448 NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEF 627
VY+ S E H VF GF + Y WD +K +D L+ +E P
Sbjct: 124 KDARI----VYIISSQKELHGLVFQDMGFT-VYEYSVWDPKKLCMDPDILLNVVEQIPHG 178
Query: 628 SIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYF 807
+ V+ N TP W ++ S++K + +FPFFD QG + +LE+D ++YF
Sbjct: 179 CVLVMG----NIIDCKLTPSGWAKLMSMIKSKQIFPFFDIPCQGLYTSDLEEDTRILQYF 234
Query: 808 VSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMEKIVRVTWSNPPAQGA 987
VS+GFE FC+QS SKNFG+Y+E VG L VVA +L VLSQ+E + + W NPP GA
Sbjct: 235 VSQGFEFFCSQSLSKNFGIYDEGVGMLVVVAVNNQQLLCVLSQLEGLAQALWLNPPNTGA 294
Query: 988 RIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALQTPGTWNHITDQNGNVSFT 1167
R++ L +P L EW ++K + + I+ + +++ +L+ L TPG+W HIT+Q+G +
Sbjct: 295 RVITSILCNPALLGEWKQSLKEVVENIMLTKEKVKEKLQLLGTPGSWGHITEQSGTHGYL 354
Query: 1168 GVNPQQVEYLIPRKHIYLLPSG 1233
G+N QQVEYL+ +KHIY+ +G
Sbjct: 355 GLNSQQVEYLVRKKHIYIPKNG 376
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,708,268
Number of extensions: 1439910
Number of successful extensions: 5298
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5283
Number of HSP's successfully gapped: 3
Length of query: 411
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 306
Effective length of database: 14,835,944
Effective search space: 4539798864
Effective search space used: 4539798864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007883
(1234 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 371 e-100
>Sscrofa_Chr14
|| Length = 153851969
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 192 agcttatcgcaccgatgattgccagccttgggttttgccagtcgtgaggaaggtggagca 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120072100 agcttatcgcaccgatgattgccagccttgggttttgccagtcgtgaggaaggtggagca 120072041
Query: 252 gaggattgctaatgacagcagcctaaaccacgagtacctgcccatcctgggcctggcaga 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120072040 gaggattgctaatgacagcagcctaaaccacgagtacctgcccatcctgggcctggcaga 120071981
Query: 312 gttccggacctgtgcttcccgccttgcccttggagatgacagcccagctcttcaggagaa 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120071980 gttccggacctgtgcttcccgccttgcccttggagatgacagcccagctcttcaggagaa 120071921
Query: 372 gcgggtg 378
|||||||
Sbjct: 120071920 gcgggtg 120071914
Score = 367 bits (185), Expect = 1e-98
Identities = 191/193 (98%)
Strand = Plus / Minus
Query: 1 gttgcagcggttggacggtaccgagcggctccgggcgcgaggtgaaagctcccggccgac 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 120080916 gttgcagcggttggacggtaccgagcggctccaggcgcgaggtgaaagctcccggccgac 120080857
Query: 61 tcctgctctctagctatggcacctccatcagtctttgccgaggttcctcaggcccagccg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120080856 tcctgctctctagctatggcacctccatcagtctttgccgaggttcctcaggcccagccc 120080797
Query: 121 gtccttgtctttaagctcattgctgacttccgggaggatccggacccccgcaaggtcaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120080796 gtccttgtctttaagctcattgctgacttccgggaggatccggacccccgcaaggtcaac 120080737
Query: 181 ctaggagtgggag 193
|||||||||||||
Sbjct: 120080736 ctaggagtgggag 120080724
Score = 331 bits (167), Expect = 5e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 869 atgagcgcgtggggaacctgaccgtggttgcaaaagaacccgatagcatcctgcgagtcc 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120059964 atgagcgcgtggggaacctgaccgtggttgcaaaagaacccgatagcatcctgcgagtcc 120059905
Query: 929 tttcccagatggagaagatcgtgcgagtgacgtggtccaatccccctgctcagggagcga 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120059904 tttcccagatggagaagatcgtgcgagtgacgtggtccaatccccctgctcagggagcga 120059845
Query: 989 gaatcgtggcccgtacgctctctgaccctgagctctttcatgaatgg 1035
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120059844 gaatcgtggcccgtacgctctctgaccctgagctctttcatgaatgg 120059798
Score = 305 bits (154), Expect = 3e-80
Identities = 157/158 (99%)
Strand = Plus / Minus
Query: 716 agcgccggtttctgttccccttctttgactcagcctatcagggcttcgcatctggcaacc 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120060200 agcgccggtttctgttccccttctttgactcagcctatcagggcttcgcatctggcaacc 120060141
Query: 776 tagaaaaagacgcctgggccattcgctattttgtgtctgaagggttcgagctcttctgtg 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120060140 tagaaaaagacgcctgggccattcgctattttgtgtctgaagggttcgagctcttctgtg 120060081
Query: 836 cccagtccttctccaagaacttcgggctctacaatgag 873
||||||||||||||||||||||||||||||||| ||||
Sbjct: 120060080 cccagtccttctccaagaacttcgggctctacagtgag 120060043
Score = 248 bits (125), Expect = 6e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 375 ggtgggaggggtgcagtctttggggggaacgggtgcacttcgaattggagctgagttctt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120063048 ggtgggaggggtgcagtctttggggggaacgggtgcacttcgaattggagctgagttctt 120062989
Query: 435 agcacgatggtacaatggaacgaacaacaaagacacgcctgtctacgtatcctcaccaac 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120062988 agcacgatggtacaatggaacgaacaacaaagacacgcctgtctacgtatcctcaccaac 120062929
Query: 495 ctggg 499
|||||
Sbjct: 120062928 ctggg 120062924
Score = 232 bits (117), Expect = 4e-58
Identities = 137/144 (95%)
Strand = Plus / Minus
Query: 1034 ggacaggtaacgtgaagacaatggctgaccgcattctgagcatgagatctgagcttaggg 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120058820 ggacaggtaacgtgaagacaatggctgaccgcattctgagcatgagatctgagcttaggg 120058761
Query: 1094 cacgattagaagccctncagacccctggaacctggaaccacatcacggaccagaatggaa 1153
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 120058760 cacgattagaagccctcaagacccctggaacctggaaccacatcacggaccagattggaa 120058701
Query: 1154 atgtcagcttcactggggtgaacc 1177
|||||||||||||| ||||||
Sbjct: 120058700 tgttcagcttcactgggttgaacc 120058677
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 499 gaaaatcacaatggagtcttcactactgctggattcaaagacattcggtcctatcgctat 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120062471 gaaaatcacaatggagtcttcactactgctggattcaaagacattcggtcctatcgctat 120062412
Query: 559 tgggataccgagaagagaggacttgatctccagggtttcctgagtgatctggag 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120062411 tgggataccgagaagagaggacttgatctccagggtttcctgagtgatctggag 120062358
Score = 204 bits (103), Expect = 8e-50
Identities = 106/107 (99%)
Strand = Plus / Minus
Query: 611 agaacgctcctgagttctccatctttgtcctccacgcctgtgcccacaacccgacaggga 670
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 120062140 agaacgctcctgagttctccatctttgtcctccacgcctgtgcccacaacccaacaggga 120062081
Query: 671 ccgacccaactccggagcagtggaagcagatcgcctctgtcatgaag 717
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120062080 ccgacccaactccggagcagtggaagcagatcgcctctgtcatgaag 120062034
Score = 69.9 bits (35), Expect = 3e-09
Identities = 52/55 (94%), Gaps = 2/55 (3%)
Strand = Plus / Minus
Query: 1181 agcaggttgaatatctgattccacgaaa-gcacatctatctgctaccaagtggtc 1234
||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct: 120054833 agcaggttgaatatctgat-caacgaaaagcacatctatctgctaccaagtggtc 120054780
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,801,112
Number of extensions: 122
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 9
Length of query: 1234
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1213
Effective length of database: 2,808,413,156
Effective search space: 3406605158228
Effective search space used: 3406605158228
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)