Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007885
(1065 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_803468.1| aspartate aminotransferase, cytoplasmic [Bos ta... 374 e-151
Alignment gi|NP_777231.1| aspartate aminotransferase, mitochondrial [Bos ... 196 2e-66
Alignment gi|NP_001033147.1| putative aspartate aminotransferase, cytopla... 146 3e-35
>ref|NP_803468.1| aspartate aminotransferase, cytoplasmic [Bos taurus].
Length = 413
Score = 374 bits (959), Expect(2) = e-151
Identities = 184/218 (84%), Positives = 192/218 (88%), Gaps = 5/218 (2%)
Frame = +3
Query: 354 PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGF 533
PALQEKRVGGVQ LGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVF AGF
Sbjct: 94 PALQEKRVGGVQCLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFIAAGF 153
Query: 534 KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 713
KDIRSY YWD KRGLDLQGFL+DLE APEFSIFVLHACAHNPTGTDPTPEQWKQIASVM
Sbjct: 154 KDIRSYHYWDAAKRGLDLQGFLNDLEKAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 213
Query: 714 KRRFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTV 893
KRRFLFPFFDSAYQ FASG+L+KDAWAIRYFVSE FELFCAQSFSKNFGLYNERVGNLTV
Sbjct: 214 KRRFLFPFFDSAYQAFASGSLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTV 273
Query: 894 VAKDPIASCESFPKWRDRASDVV-----NPPAQGARIV 992
VAK+P +S + + +V NPPAQGARIV
Sbjct: 274 VAKEP----DSILRVLSQMEKIVRITWSNPPAQGARIV 307
Score = 182 bits (461), Expect(2) = e-151
Identities = 88/93 (94%), Positives = 90/93 (96%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
MAPPS+FAEVPQAQPVLVFKL ADFRE PDPRKVNLGVGAYRTDD QPWVLPVVRKVEQR
Sbjct: 1 MAPPSIFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDSQPWVLPVVRKVEQR 60
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDS 354
IANDSS+NHEYLPILGLAEFRTCASRLALGDDS
Sbjct: 61 IANDSSINHEYLPILGLAEFRTCASRLALGDDS 93
Score = 55.8 bits (133), Expect = 6e-08
Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = +2
Query: 899 KRPDSILRVLSQMERSCE*RGQSPCSR-SEDRAPTLSDPELFHEWNSNLKTMPDPI 1063
K PDSILRVLSQME+ +P ++ + A TLSDPELF+EW N+KTM D I
Sbjct: 276 KEPDSILRVLSQMEKIVRITWSNPPAQGARIVARTLSDPELFNEWTGNVKTMADRI 331
>ref|NP_777231.1| aspartate aminotransferase, mitochondrial [Bos taurus].
Length = 430
Score = 196 bits (498), Expect(2) = 2e-66
Identities = 100/215 (46%), Positives = 136/215 (63%), Gaps = 5/215 (2%)
Frame = +3
Query: 360 LQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKD 539
L+ R VQ++ GTGALRIGA FL R++ + + V++ PTW NH +F AG +
Sbjct: 121 LKSGRYVTVQTISGTGALRIGASFLQRFFKFSRD----VFLPKPTWGNHTPIFRDAGMQ- 175
Query: 540 IRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKR 719
++SYRY+D + G D G + D+ P S+ +LHACAHNPTG DP PEQWK++A+V+K+
Sbjct: 176 LQSYRYYDPKTCGFDFTGAIEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATVVKK 235
Query: 720 RFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVVA 899
LF FFD AYQGFASG+ KDAWA+R+F+ + + QS++KN GLY ERVG TVV
Sbjct: 236 NNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVC 295
Query: 900 KDPIASCESFPKWRDRASDVV-----NPPAQGARI 989
KD E + + ++ NPP GARI
Sbjct: 296 KD----AEEAKRVESQLKILIRPMYSNPPINGARI 326
Score = 75.5 bits (184), Expect(2) = 2e-66
Identities = 41/105 (39%), Positives = 65/105 (61%)
Frame = +1
Query: 52 PADSCSLAMAPPSVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLP 231
P + + + S +A V P + + F+ + +K+NLGVGAYR D+ +P+VLP
Sbjct: 19 PGLAAAASARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLP 78
Query: 232 VVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDDSQLFR 366
VRK E +IA +L+ EYLPI GLAEF ++ LALG+++++ +
Sbjct: 79 SVRKAEAQIA-AKNLDKEYLPIAGLAEFCKASAELALGENNEVLK 122
>ref|NP_001033147.1| putative aspartate aminotransferase, cytoplasmic 2 [Bos taurus].
Length = 407
Score = 146 bits (368), Expect = 3e-35
Identities = 85/223 (38%), Positives = 126/223 (56%), Gaps = 1/223 (0%)
Frame = +3
Query: 366 EKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIR 545
E R GGVQ++G +GA ++GA+FL W + VY+ S E H +F GF +
Sbjct: 97 ENRAGGVQTVGDSGAFQLGAQFLKSWCQSSQI----VYIVSSQKEPHGLIFQDMGFT-VY 151
Query: 546 SYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRF 725
+ +WD+ LD L +++AP +FV+ + + TP QW Q+ ++MK +
Sbjct: 152 EHTFWDSAHLCLDPNMLLDVVKHAPHGCVFVIGSMGN----CQLTPSQWTQLMTLMKSKE 207
Query: 726 LFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVVAKD 905
+FPFFD YQG ++G+L++DA + YFVS+ FE FC+QS SKNFG+Y+E VG L VV D
Sbjct: 208 IFPFFDIPYQGLSTGDLEEDARFLHYFVSQGFEFFCSQSLSKNFGIYDEGVGTLVVVTLD 267
Query: 906 PIASCESFPKWRDRASDV-VNPPAQGARIVPLPSLTLNSFMNG 1031
+ + A + +NPP GARI+ S+ N M G
Sbjct: 268 NQLLLRVLSQLMNFARALWLNPPTTGARII--TSVLCNPAMQG 308
Score = 68.2 bits (165), Expect = 1e-11
Identities = 39/111 (35%), Positives = 58/111 (52%)
Frame = +1
Query: 88 SVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAND 267
SVF +VP AQ L L+ +++ +P K+ L T +PWV VVRK +IA D
Sbjct: 5 SVFTDVPMAQK-LEGSLLKTYKQDDNPNKMFLAYKVCMTSKGRPWVSSVVRKTRMQIAQD 63
Query: 268 SSLNHEYLPILGLAEFRTCASRLALGDDSQLFRRSGWEGCSLWGERVHFEL 420
SLN+EY P++G+ F + L G +SQ+ + G G+ F+L
Sbjct: 64 PSLNYEYTPVMGMKSFVQASLNLLFGKNSQVIVENRAGGVQTVGDSGAFQL 114
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,864,077
Number of extensions: 1196916
Number of successful extensions: 4195
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4180
Number of HSP's successfully gapped: 7
Length of query: 355
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 252
Effective length of database: 14,273,310
Effective search space: 3596874120
Effective search space used: 3596874120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007885
(1065 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543963.1| PREDICTED: similar to aspartate aminotransferas... 379 e-153
Alignment gi|XP_861285.1| PREDICTED: similar to aspartate aminotransferas... 379 e-153
Alignment gi|XP_535278.2| PREDICTED: similar to Aspartate aminotransferas... 195 7e-66
Alignment gi|XP_863389.1| PREDICTED: similar to Aspartate aminotransferas... 195 7e-66
Alignment gi|XP_851273.1| PREDICTED: similar to Aspartate aminotransferas... 195 7e-66
Alignment gi|XP_532809.2| PREDICTED: similar to CG8430-PB, isoform B [Can... 138 1e-32
>ref|XP_543963.1| PREDICTED: similar to aspartate aminotransferase 1 isoform 1 [Canis
familiaris].
Length = 413
Score = 379 bits (973), Expect(2) = e-153
Identities = 186/218 (85%), Positives = 195/218 (89%), Gaps = 5/218 (2%)
Frame = +3
Query: 354 PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGF 533
PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVF+ AGF
Sbjct: 94 PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFSAAGF 153
Query: 534 KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 713
KDIRSY YWD KRGLDLQGFL+DLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM
Sbjct: 154 KDIRSYHYWDEAKRGLDLQGFLNDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 213
Query: 714 KRRFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTV 893
KRRFLFPFFDSAYQGFASG+L+KDAWA+RYFVSE FELFCAQSFSKNFGLYNERVGNLTV
Sbjct: 214 KRRFLFPFFDSAYQGFASGDLEKDAWAVRYFVSEGFELFCAQSFSKNFGLYNERVGNLTV 273
Query: 894 VAKDPIASCESFPKWRDRASDVV-----NPPAQGARIV 992
VAKD +S + + +V NPPAQGARIV
Sbjct: 274 VAKD----ADSILRVLSQMEKIVRITWSNPPAQGARIV 307
Score = 182 bits (462), Expect(2) = e-153
Identities = 88/93 (94%), Positives = 89/93 (95%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
MAPPSVFAEVPQAQPVLVFKL ADFRE PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQ+
Sbjct: 1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQK 60
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDS 354
IAND SLNHEYLPILGLAEFRTCASRL LGDDS
Sbjct: 61 IANDHSLNHEYLPILGLAEFRTCASRLVLGDDS 93
Score = 49.7 bits (117), Expect = 5e-06
Identities = 29/56 (51%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +2
Query: 899 KRPDSILRVLSQMERSCE*RGQSPCSR-SEDRAPTLSDPELFHEWNSNLKTMPDPI 1063
K DSILRVLSQME+ +P ++ + A TLS+PELF EW N+KTM D I
Sbjct: 276 KDADSILRVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFKEWTGNVKTMADRI 331
>ref|XP_861285.1| PREDICTED: similar to aspartate aminotransferase 1 isoform 2 [Canis
familiaris].
Length = 394
Score = 379 bits (973), Expect(2) = e-153
Identities = 186/218 (85%), Positives = 195/218 (89%), Gaps = 5/218 (2%)
Frame = +3
Query: 354 PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGF 533
PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVF+ AGF
Sbjct: 94 PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFSAAGF 153
Query: 534 KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 713
KDIRSY YWD KRGLDLQGFL+DLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM
Sbjct: 154 KDIRSYHYWDEAKRGLDLQGFLNDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 213
Query: 714 KRRFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTV 893
KRRFLFPFFDSAYQGFASG+L+KDAWA+RYFVSE FELFCAQSFSKNFGLYNERVGNLTV
Sbjct: 214 KRRFLFPFFDSAYQGFASGDLEKDAWAVRYFVSEGFELFCAQSFSKNFGLYNERVGNLTV 273
Query: 894 VAKDPIASCESFPKWRDRASDVV-----NPPAQGARIV 992
VAKD +S + + +V NPPAQGARIV
Sbjct: 274 VAKD----ADSILRVLSQMEKIVRITWSNPPAQGARIV 307
Score = 182 bits (462), Expect(2) = e-153
Identities = 88/93 (94%), Positives = 89/93 (95%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
MAPPSVFAEVPQAQPVLVFKL ADFRE PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQ+
Sbjct: 1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQK 60
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDS 354
IAND SLNHEYLPILGLAEFRTCASRL LGDDS
Sbjct: 61 IANDHSLNHEYLPILGLAEFRTCASRLVLGDDS 93
>ref|XP_535278.2| PREDICTED: similar to Aspartate aminotransferase, mitochondrial
precursor (Transaminase A) (Glutamate oxaloacetate
transaminase-2) [Canis familiaris].
Length = 570
Score = 195 bits (496), Expect(2) = 7e-66
Identities = 102/212 (48%), Positives = 134/212 (63%), Gaps = 2/212 (0%)
Frame = +3
Query: 360 LQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKD 539
L+ R VQ++ GTGALRIGA FL R++ + + V++ P+W NH +F AG +
Sbjct: 261 LKSSRYVTVQTISGTGALRIGASFLQRFFKFSQD----VFLPKPSWGNHTPIFRDAGMQ- 315
Query: 540 IRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKR 719
+ YRY+D + G D G + D+ P+ S+ +LHACAHNPTG DP PEQWK+IA+V+K+
Sbjct: 316 LHGYRYYDPKTCGFDFTGAIEDISKMPQQSVLLLHACAHNPTGVDPRPEQWKEIATVVKK 375
Query: 720 RFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVVA 899
LF FFD AYQGFASG+ KDAWA+R+F+ + + QS++KN GLY ERVG TVV
Sbjct: 376 NNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVC 435
Query: 900 K--DPIASCESFPKWRDRASDVVNPPAQGARI 989
K D ES K R NPP GARI
Sbjct: 436 KDADEAKRVESQLKILIRPM-YSNPPINGARI 466
Score = 74.7 bits (182), Expect(2) = 7e-66
Identities = 40/95 (42%), Positives = 61/95 (64%)
Frame = +1
Query: 88 SVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAND 267
S + V P + + F+ + +K+NLGVGAYR D+ +P+VLP VRK E +IA
Sbjct: 171 SWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIA-A 229
Query: 268 SSLNHEYLPILGLAEFRTCASRLALGDDSQLFRRS 372
+L+ EYLPI GLAEF ++ LALG+++++ + S
Sbjct: 230 KNLDKEYLPIAGLAEFCKASAELALGENNEVLKSS 264
>ref|XP_863389.1| PREDICTED: similar to Aspartate aminotransferase, mitochondrial
precursor (Transaminase A) (Glutamate oxaloacetate
transaminase-2) isoform 3 [Canis familiaris].
Length = 394
Score = 195 bits (496), Expect(2) = 7e-66
Identities = 102/212 (48%), Positives = 134/212 (63%), Gaps = 2/212 (0%)
Frame = +3
Query: 360 LQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKD 539
L+ R VQ++ GTGALRIGA FL R++ + + V++ P+W NH +F AG +
Sbjct: 121 LKSSRYVTVQTISGTGALRIGASFLQRFFKFSQD----VFLPKPSWGNHTPIFRDAGMQ- 175
Query: 540 IRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKR 719
+ YRY+D + G D G + D+ P+ S+ +LHACAHNPTG DP PEQWK+IA+V+K+
Sbjct: 176 LHGYRYYDPKTCGFDFTGAIEDISKMPQQSVLLLHACAHNPTGVDPRPEQWKEIATVVKK 235
Query: 720 RFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVVA 899
LF FFD AYQGFASG+ KDAWA+R+F+ + + QS++KN GLY ERVG TVV
Sbjct: 236 NNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVC 295
Query: 900 K--DPIASCESFPKWRDRASDVVNPPAQGARI 989
K D ES K R NPP GARI
Sbjct: 296 KDADEAKRVESQLKILIRPM-YSNPPINGARI 326
Score = 74.7 bits (182), Expect(2) = 7e-66
Identities = 40/95 (42%), Positives = 61/95 (64%)
Frame = +1
Query: 88 SVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAND 267
S + V P + + F+ + +K+NLGVGAYR D+ +P+VLP VRK E +IA
Sbjct: 31 SWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIA-A 89
Query: 268 SSLNHEYLPILGLAEFRTCASRLALGDDSQLFRRS 372
+L+ EYLPI GLAEF ++ LALG+++++ + S
Sbjct: 90 KNLDKEYLPIAGLAEFCKASAELALGENNEVLKSS 124
>ref|XP_851273.1| PREDICTED: similar to Aspartate aminotransferase, mitochondrial
precursor (Transaminase A) (Glutamate oxaloacetate
transaminase-2) isoform 2 [Canis familiaris].
Length = 393
Score = 195 bits (496), Expect(2) = 7e-66
Identities = 102/212 (48%), Positives = 134/212 (63%), Gaps = 2/212 (0%)
Frame = +3
Query: 360 LQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKD 539
L+ R VQ++ GTGALRIGA FL R++ + + V++ P+W NH +F AG +
Sbjct: 121 LKSSRYVTVQTISGTGALRIGASFLQRFFKFSQD----VFLPKPSWGNHTPIFRDAGMQ- 175
Query: 540 IRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKR 719
+ YRY+D + G D G + D+ P+ S+ +LHACAHNPTG DP PEQWK+IA+V+K+
Sbjct: 176 LHGYRYYDPKTCGFDFTGAIEDISKMPQQSVLLLHACAHNPTGVDPRPEQWKEIATVVKK 235
Query: 720 RFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVVA 899
LF FFD AYQGFASG+ KDAWA+R+F+ + + QS++KN GLY ERVG TVV
Sbjct: 236 NNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVC 295
Query: 900 K--DPIASCESFPKWRDRASDVVNPPAQGARI 989
K D ES K R NPP GARI
Sbjct: 296 KDADEAKRVESQLKILIRPM-YSNPPINGARI 326
Score = 74.7 bits (182), Expect(2) = 7e-66
Identities = 40/95 (42%), Positives = 61/95 (64%)
Frame = +1
Query: 88 SVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAND 267
S + V P + + F+ + +K+NLGVGAYR D+ +P+VLP VRK E +IA
Sbjct: 31 SWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIA-A 89
Query: 268 SSLNHEYLPILGLAEFRTCASRLALGDDSQLFRRS 372
+L+ EYLPI GLAEF ++ LALG+++++ + S
Sbjct: 90 KNLDKEYLPIAGLAEFCKASAELALGENNEVLKSS 124
>ref|XP_532809.2| PREDICTED: similar to CG8430-PB, isoform B [Canis familiaris].
Length = 406
Score = 138 bits (347), Expect = 1e-32
Identities = 87/224 (38%), Positives = 124/224 (55%), Gaps = 2/224 (0%)
Frame = +3
Query: 366 EKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTP-VYVSSPTWENHNGVFTTAGFKDI 542
E RVGGV ++G GA ++GA+FL W KD+ VY+ S E+H VF GF +
Sbjct: 97 ENRVGGVHTVGDNGAFQLGAQFLKIW-----RKDSRIVYIISSKKESHGLVFQDMGFT-V 150
Query: 543 RSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR 722
Y WD+++ +D L E AP IFV+ N T QW ++ + MK +
Sbjct: 151 CEYSLWDSKQLCMDPNVLLDVAEQAPHGCIFVIG----NIGDCKLTQSQWARLIASMKSK 206
Query: 723 FLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVVA- 899
+FPFFD YQG ++GNL++D ++YFVS+ FE FC+QS SK FG+Y+E VG L VVA
Sbjct: 207 QIFPFFDIPYQGLSTGNLEEDTGFLQYFVSQDFEFFCSQSLSKIFGIYDEGVGVLVVVAL 266
Query: 900 KDPIASCESFPKWRDRASDVVNPPAQGARIVPLPSLTLNSFMNG 1031
+ + C + +NPP +GARI+ S+ N + G
Sbjct: 267 NNQLLLCVLSQLMNLTQALWLNPPTRGARII--TSILCNPALQG 308
Score = 65.1 bits (157), Expect = 1e-10
Identities = 37/111 (33%), Positives = 60/111 (54%)
Frame = +1
Query: 88 SVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAND 267
SVF +VP AQ L L+ +++ P+K+ L T + QPWV VV K+ +I+ D
Sbjct: 5 SVFLDVPLAQK-LEGSLLKTYKQDDCPKKIFLAYRVCMTTEGQPWVSSVVPKIRLQISQD 63
Query: 268 SSLNHEYLPILGLAEFRTCASRLALGDDSQLFRRSGWEGCSLWGERVHFEL 420
SLN+EY+P++G+ F + +L G +Q+ + G G+ F+L
Sbjct: 64 PSLNYEYMPMMGMKSFMEASLKLLFGKYNQVIVENRVGGVHTVGDNGAFQL 114
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,805,030
Number of extensions: 1241221
Number of successful extensions: 4369
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4348
Number of HSP's successfully gapped: 13
Length of query: 355
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 251
Effective length of database: 15,407,560
Effective search space: 3867297560
Effective search space used: 3867297560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007885
(1065 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999092.1| aspartate aminotransferase, cytoplasmic [Sus sc... 394 e-160
Alignment gi|NP_999093.1| aspartate aminotransferase, mitochondrial [Sus ... 194 1e-65
>ref|NP_999092.1| aspartate aminotransferase, cytoplasmic [Sus scrofa].
Length = 413
Score = 394 bits (1011), Expect(2) = e-160
Identities = 194/218 (88%), Positives = 200/218 (91%), Gaps = 5/218 (2%)
Frame = +3
Query: 354 PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGF 533
PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGF
Sbjct: 94 PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGF 153
Query: 534 KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 713
KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM
Sbjct: 154 KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 213
Query: 714 KRRFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTV 893
KRRFLFPFFDSAYQGFASGNL+KDAWAIRYFVSE FELFCAQSFSKNFGLYNERVGNLTV
Sbjct: 214 KRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTV 273
Query: 894 VAKDPIASCESFPKWRDRASDVV-----NPPAQGARIV 992
VAK+P +S + + +V NPPAQGARIV
Sbjct: 274 VAKEP----DSILRVLSQMEKIVRVTWSNPPAQGARIV 307
Score = 189 bits (479), Expect(2) = e-160
Identities = 92/93 (98%), Positives = 92/93 (98%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
MAPPSVFAEVPQAQPVLVFKLIADFRE PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR
Sbjct: 1 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 60
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDS 354
IANDSSLNHEYLPILGLAEFRTCASRLALGDDS
Sbjct: 61 IANDSSLNHEYLPILGLAEFRTCASRLALGDDS 93
Score = 58.5 bits (140), Expect = 6e-09
Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = +2
Query: 899 KRPDSILRVLSQMERSCE*RGQSPCSR-SEDRAPTLSDPELFHEWNSNLKTMPDPI 1063
K PDSILRVLSQME+ +P ++ + A TLSDPELFHEW N+KTM D I
Sbjct: 276 KEPDSILRVLSQMEKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRI 331
>ref|NP_999093.1| aspartate aminotransferase, mitochondrial [Sus scrofa].
Length = 430
Score = 194 bits (493), Expect(2) = 1e-65
Identities = 99/215 (46%), Positives = 135/215 (62%), Gaps = 5/215 (2%)
Frame = +3
Query: 360 LQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKD 539
L+ R VQ++ GTGALRIGA FL R++ + + V++ P+W NH +F AG +
Sbjct: 121 LKSGRYVTVQTISGTGALRIGANFLQRFFKFSRD----VFLPKPSWGNHTPIFRDAGMQ- 175
Query: 540 IRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKR 719
+ SYRY+D + G D G L D+ P S+ +LHACAHNPTG DP PEQWK++A+++K+
Sbjct: 176 LHSYRYYDPKTCGFDFTGALEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATLVKK 235
Query: 720 RFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVVA 899
LF FFD AYQGFASG+ KDAWA+R+F+ + + QS++KN GLY ERVG TVV
Sbjct: 236 NNLFAFFDMAYQGFASGDGNKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVC 295
Query: 900 KDPIASCESFPKWRDRASDVV-----NPPAQGARI 989
KD E + + ++ NPP GARI
Sbjct: 296 KD----AEEAKRVESQLKILIRPMYSNPPVNGARI 326
Score = 74.3 bits (181), Expect(2) = 1e-65
Identities = 41/105 (39%), Positives = 65/105 (61%)
Frame = +1
Query: 52 PADSCSLAMAPPSVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLP 231
P + + + S +A V P + + F+ + +K+NLGVGAYR D+ +P+VLP
Sbjct: 19 PGLAAAASARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLP 78
Query: 232 VVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDDSQLFR 366
VRK E +IA +L+ EYLPI GLAEF ++ LALG+++++ +
Sbjct: 79 SVRKAEAQIA-AKNLDKEYLPIGGLAEFCKASAELALGENNEVLK 122
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,695,453
Number of extensions: 774980
Number of successful extensions: 2866
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2856
Number of HSP's successfully gapped: 5
Length of query: 355
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,854,232
Effective search space: 2257829160
Effective search space used: 2257829160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007885
(1065 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034454.2| aspartate aminotransferase, cytoplasmic [Mus mu... 356 e-143
Alignment gi|NP_034455.1| aspartate aminotransferase, mitochondrial [Mus ... 199 2e-66
Alignment gi|XP_003086836.1| PREDICTED: aspartate aminotransferase, cytop... 194 7e-52
Alignment gi|NP_083950.1| putative aspartate aminotransferase, cytoplasmi... 119 5e-27
>ref|NP_034454.2| aspartate aminotransferase, cytoplasmic [Mus musculus].
Length = 413
Score = 356 bits (914), Expect(2) = e-143
Identities = 173/217 (79%), Positives = 190/217 (87%), Gaps = 5/217 (2%)
Frame = +3
Query: 357 ALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFK 536
A++E RVGGVQSLGGTGALRIGA+FL RWYNGT+NK+TP+YVSSPTWENHN VF+ AGFK
Sbjct: 95 AIRENRVGGVQSLGGTGALRIGADFLGRWYNGTDNKNTPIYVSSPTWENHNAVFSAAGFK 154
Query: 537 DIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMK 716
DIR Y YWD EKRGLDLQGFL+DLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIA+VM+
Sbjct: 155 DIRPYCYWDAEKRGLDLQGFLNDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIAAVMQ 214
Query: 717 RRFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVV 896
RRFLFPFFDSAYQGFASG+L+KDAWAIRYFVSE FELFCAQSFSKNFGLYNERVGNLTVV
Sbjct: 215 RRFLFPFFDSAYQGFASGDLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVV 274
Query: 897 AKDPIASCESFPKWRDRASDVV-----NPPAQGARIV 992
K+ +S + + +V NPPAQGARIV
Sbjct: 275 GKE----SDSVLRVLSQMEKIVRITWSNPPAQGARIV 307
Score = 171 bits (432), Expect(2) = e-143
Identities = 82/99 (82%), Positives = 90/99 (90%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
MAPPSVFA+VPQA PVLVFKL ADFR+ PDPRKVNLGVGAYRTD+ QPWVLPVVRKVEQ+
Sbjct: 1 MAPPSVFAQVPQAPPVLVFKLTADFRDDPDPRKVNLGVGAYRTDESQPWVLPVVRKVEQK 60
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDSQLFRRS 372
IAND+SLNHEYLPILGLAEFR+CASRL LGD+S R +
Sbjct: 61 IANDNSLNHEYLPILGLAEFRSCASRLVLGDNSLAIREN 99
Score = 52.0 bits (123), Expect = 8e-07
Identities = 29/56 (51%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +2
Query: 899 KRPDSILRVLSQMERSCE*RGQSPCSR-SEDRAPTLSDPELFHEWNSNLKTMPDPI 1063
K DS+LRVLSQME+ +P ++ + A TLSDPELF EW N+KTM D I
Sbjct: 276 KESDSVLRVLSQMEKIVRITWSNPPAQGARIVAATLSDPELFKEWKGNVKTMADRI 331
>ref|NP_034455.1| aspartate aminotransferase, mitochondrial [Mus musculus].
Length = 430
Score = 199 bits (505), Expect(2) = 2e-66
Identities = 101/215 (46%), Positives = 137/215 (63%), Gaps = 5/215 (2%)
Frame = +3
Query: 360 LQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKD 539
L+ R VQ++ GTGALR+GA FL R++ + + V++ P+W NH +F AG +
Sbjct: 121 LKSGRFVTVQTISGTGALRVGASFLQRFFKFSRD----VFLPKPSWGNHTPIFRDAGMQ- 175
Query: 540 IRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKR 719
++ YRY+D + G D G L D+ PE S+ +LHACAHNPTG DP PEQWK+IASV+K+
Sbjct: 176 LQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVKK 235
Query: 720 RFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVVA 899
+ LF FFD AYQGFASG+ KDAWA+R+F+ + + QS++KN GLY ERVG TVV
Sbjct: 236 KNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVVC 295
Query: 900 KDPIASCESFPKWRDRASDVV-----NPPAQGARI 989
KD E + + ++ NPP GARI
Sbjct: 296 KD----AEEAKRVESQLKILIRPLYSNPPLNGARI 326
Score = 72.8 bits (177), Expect(2) = 2e-66
Identities = 40/105 (38%), Positives = 64/105 (60%)
Frame = +1
Query: 52 PADSCSLAMAPPSVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLP 231
P + + + S + V P + + F+ + +K+NLGVGAYR D+ +P+VLP
Sbjct: 19 PGLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLP 78
Query: 232 VVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDDSQLFR 366
VRK E +IA +L+ EYLPI GLAEF ++ LALG+++++ +
Sbjct: 79 SVRKAEAQIA-AKNLDKEYLPIGGLAEFCKASAELALGENNEVLK 122
>ref|XP_003086836.1| PREDICTED: aspartate aminotransferase, cytoplasmic-like, partial [Mus
musculus].
Length = 318
Score = 194 bits (493), Expect(2) = 7e-52
Identities = 105/221 (47%), Positives = 140/221 (63%), Gaps = 7/221 (3%)
Frame = +3
Query: 375 VGGVQSLGGTGALRIGAEFLARWYN--GTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRS 548
V +Q++ GTGA +G FL+R+YN G +K VY+S+PTW NHN +F+ G I
Sbjct: 1 VASIQTISGTGACHLGGLFLSRFYNPYGDASKKPTVYLSNPTWANHNQIFSNVGLP-IAQ 59
Query: 549 YRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFL 728
Y Y+D + +GLD+ G L +APE SI +LHACAHNPTG DPT QW++IA +M +
Sbjct: 60 YPYFDQKTKGLDIDGMKKALSDAPERSIILLHACAHNPTGVDPTLAQWREIAEIMAAKGH 119
Query: 729 FPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVV-AKD 905
FPFFD+AYQGFASG+L +DA AIR FV FEL AQSF+KNFGLY +R G + A
Sbjct: 120 FPFFDTAYQGFASGDLDRDASAIRLFVELGFELVVAQSFAKNFGLYGQRAGCFHFISAPS 179
Query: 906 PIASCESFPKWRD----RASDVVNPPAQGARIVPLPSLTLN 1016
P A+ + + S++ NPP GA++ S+ LN
Sbjct: 180 PDAASITTRVASQLTLLQRSEISNPPIYGAKVA---SIVLN 217
Score = 28.9 bits (63), Expect(2) = 7e-52
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 1001 LSDPELFHEWNSNLKTM 1051
L+DP LF EW NL+TM
Sbjct: 216 LNDPALFAEWKENLRTM 232
>ref|NP_083950.1| putative aspartate aminotransferase, cytoplasmic 2 [Mus musculus].
Length = 404
Score = 119 bits (297), Expect = 5e-27
Identities = 78/213 (36%), Positives = 111/213 (52%), Gaps = 1/213 (0%)
Frame = +3
Query: 357 ALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFK 536
A+ EKRVGGV +G +GA ++GA+FL W V + S E +F GF
Sbjct: 94 AIAEKRVGGVHIVGESGAFQLGAQFLKTWRKNVKI----VCIVSCQKEQCGLIFQDMGFI 149
Query: 537 DIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMK 716
+ Y W+ D F+ L++ P SI V+ N T T QW ++ S++K
Sbjct: 150 -VYEYSIWNASDLCSDPSMFVEVLQHIPVGSILVIG----NITDCKFTQNQWTKLMSIIK 204
Query: 717 RRFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVV 896
+ +FPFFD QG ++G+L++D ++YFVS E FC+QS SKNFG+Y+E VG L V
Sbjct: 205 SKQIFPFFDIPCQGLSTGDLEEDTKILQYFVSLGLEFFCSQSLSKNFGIYDEGVGILVVA 264
Query: 897 AKDPIASCESFPKWRDRASDV-VNPPAQGARIV 992
A + D + NPPA GARI+
Sbjct: 265 ALSNQHLLCVLSQLMDYVQALWGNPPATGARII 297
Score = 63.2 bits (152), Expect = 3e-10
Identities = 41/115 (35%), Positives = 57/115 (49%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
M SVF +VP AQ L L+ +R+ P K+ L T++ PWV VV K +
Sbjct: 1 MTSLSVFRDVPTAQK-LEGSLLKIYRQDGYPSKLFLAYKVCMTEEGHPWVSLVVHKTRLQ 59
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDSQLFRRSGWEGCSLWGERVHFEL 420
IA D SL++EYLP++GL F + L G S+ G + GE F+L
Sbjct: 60 IAEDPSLDYEYLPLVGLKSFIQSSLELLFGKHSEAIAEKRVGGVHIVGESGAFQL 114
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,994,489
Number of extensions: 1005280
Number of successful extensions: 3316
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3303
Number of HSP's successfully gapped: 9
Length of query: 355
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 253
Effective length of database: 12,553,887
Effective search space: 3176133411
Effective search space used: 3176133411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007885
(1065 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002070.1| aspartate aminotransferase, cytoplasmic [Homo s... 370 e-150
Alignment gi|NP_002071.2| aspartate aminotransferase, mitochondrial precu... 197 2e-66
Alignment gi|NP_689626.2| putative aspartate aminotransferase, cytoplasmi... 128 1e-29
>ref|NP_002070.1| aspartate aminotransferase, cytoplasmic [Homo sapiens].
Length = 413
Score = 370 bits (949), Expect(2) = e-150
Identities = 181/218 (83%), Positives = 192/218 (88%), Gaps = 5/218 (2%)
Frame = +3
Query: 354 PALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGF 533
PAL+EKRVGGVQSLGGTGALRIGA+FLARWYNGTNNK+TPVYVSSPTWENHN VF+ AGF
Sbjct: 94 PALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGF 153
Query: 534 KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 713
KDIRSYRYWD EKRGLDLQGFL+DLENAPEFSI VLHACAHNPTG DPTPEQWKQIASVM
Sbjct: 154 KDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVM 213
Query: 714 KRRFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTV 893
K RFLFPFFDSAYQGFASGNL++DAWAIRYFVSE FE FCAQSFSKNFGLYNERVGNLTV
Sbjct: 214 KHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTV 273
Query: 894 VAKDPIASCESFPKWRDRASDVV-----NPPAQGARIV 992
V K+P ES + + +V NPPAQGARIV
Sbjct: 274 VGKEP----ESILQVLSQMEKIVRITWSNPPAQGARIV 307
Score = 180 bits (456), Expect(2) = e-150
Identities = 86/93 (92%), Positives = 90/93 (96%)
Frame = +1
Query: 76 MAPPSVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQR 255
MAPPSVFAEVPQAQPVLVFKL ADFRE PDPRKVNLGVGAYRTDDC PWVLPVV+KVEQ+
Sbjct: 1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQK 60
Query: 256 IANDSSLNHEYLPILGLAEFRTCASRLALGDDS 354
IAND+SLNHEYLPILGLAEFR+CASRLALGDDS
Sbjct: 61 IANDNSLNHEYLPILGLAEFRSCASRLALGDDS 93
Score = 50.8 bits (120), Expect = 2e-06
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +2
Query: 899 KRPDSILRVLSQMERSCE*RGQSPCSR-SEDRAPTLSDPELFHEWNSNLKTMPDPI 1063
K P+SIL+VLSQME+ +P ++ + A TLS+PELF EW N+KTM D I
Sbjct: 276 KEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFEEWTGNVKTMADRI 331
>ref|NP_002071.2| aspartate aminotransferase, mitochondrial precursor [Homo sapiens].
Length = 430
Score = 197 bits (502), Expect(2) = 2e-66
Identities = 104/212 (49%), Positives = 136/212 (64%), Gaps = 2/212 (0%)
Frame = +3
Query: 360 LQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKD 539
L+ R VQ++ GTGALRIGA FL R++ + + V++ PTW NH +F AG +
Sbjct: 121 LKSGRFVTVQTISGTGALRIGASFLQRFFKFSRD----VFLPKPTWGNHTPIFRDAGMQ- 175
Query: 540 IRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKR 719
++ YRY+D + G D G + D+ PE S+ +LHACAHNPTG DP PEQWK+IA+V+K+
Sbjct: 176 LQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVKK 235
Query: 720 RFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVVA 899
R LF FFD AYQGFASG+ KDAWA+R+F+ + + QS++KN GLY ERVG T+V
Sbjct: 236 RNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTMVC 295
Query: 900 K--DPIASCESFPKWRDRASDVVNPPAQGARI 989
K D ES K R NPP GARI
Sbjct: 296 KDADEAKRVESQLKILIRPM-YSNPPLNGARI 326
Score = 73.9 bits (180), Expect(2) = 2e-66
Identities = 41/105 (39%), Positives = 64/105 (60%)
Frame = +1
Query: 52 PADSCSLAMAPPSVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLP 231
P + + + S + V P + + F+ + +K+NLGVGAYR D+ +P+VLP
Sbjct: 19 PGLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLP 78
Query: 232 VVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDDSQLFR 366
VRK E +IA +L+ EYLPI GLAEF ++ LALG++S++ +
Sbjct: 79 SVRKAEAQIA-AKNLDKEYLPIGGLAEFCKASAELALGENSEVLK 122
>ref|NP_689626.2| putative aspartate aminotransferase, cytoplasmic 2 [Homo sapiens].
Length = 421
Score = 128 bits (321), Expect = 1e-29
Identities = 77/213 (36%), Positives = 115/213 (53%), Gaps = 1/213 (0%)
Frame = +3
Query: 357 ALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFK 536
A+ E RVGGV ++G +GA ++G +FL W+ VY+ S E H VF GF
Sbjct: 94 AIVENRVGGVHTVGDSGAFQLGVQFLRAWHKDARI----VYIISSQKELHGLVFQDMGFT 149
Query: 537 DIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMK 716
+ Y WD +K +D L+ +E P + V+ N TP W ++ S++K
Sbjct: 150 -VYEYSVWDPKKLCMDPDILLNVVEQIPHGCVLVMG----NIIDCKLTPSGWAKLMSMIK 204
Query: 717 RRFLFPFFDSAYQGFASGNLKKDAWAIRYFVSERFELFCAQSFSKNFGLYNERVGNLTVV 896
+ +FPFFD QG + +L++D ++YFVS+ FE FC+QS SKNFG+Y+E VG L VV
Sbjct: 205 SKQIFPFFDIPCQGLYTSDLEEDTRILQYFVSQGFEFFCSQSLSKNFGIYDEGVGMLVVV 264
Query: 897 AKDPIASCESFPKWRDRASDV-VNPPAQGARIV 992
A + + A + +NPP GAR++
Sbjct: 265 AVNNQQLLCVLSQLEGLAQALWLNPPNTGARVI 297
Score = 60.1 bits (144), Expect = 3e-09
Identities = 38/111 (34%), Positives = 55/111 (49%)
Frame = +1
Query: 88 SVFAEVPQAQPVLVFKLIADFREGPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAND 267
SVF +VP A L L+ +++ P K+ L T++ PWV VV+K +I+ D
Sbjct: 5 SVFMDVPLAHK-LEGSLLKTYKQDDYPNKIFLAYRVCMTNEGHPWVSLVVQKTRLQISQD 63
Query: 268 SSLNHEYLPILGLAEFRTCASRLALGDDSQLFRRSGWEGCSLWGERVHFEL 420
SLN+EYLP +GL F + L G SQ + G G+ F+L
Sbjct: 64 PSLNYEYLPTMGLKSFIQASLALLFGKHSQAIVENRVGGVHTVGDSGAFQL 114
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,856,247
Number of extensions: 1211889
Number of successful extensions: 4221
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4209
Number of HSP's successfully gapped: 7
Length of query: 355
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 251
Effective length of database: 14,868,908
Effective search space: 3732095908
Effective search space used: 3732095908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007885
(1065 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 359 2e-96
>Sscrofa_Chr14
|| Length = 153851969
Score = 359 bits (181), Expect = 2e-96
Identities = 190/193 (98%)
Strand = Plus / Minus
Query: 1 gttgcagcggttggacggtaccgagcggctccgggcgcgaggtgaaagctcccggccgac 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 120080916 gttgcagcggttggacggtaccgagcggctccaggcgcgaggtgaaagctcccggccgac 120080857
Query: 61 tcctgctctctagctatggcacctccatcagtctttgccgaggttcctcaggcccagccg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120080856 tcctgctctctagctatggcacctccatcagtctttgccgaggttcctcaggcccagccc 120080797
Query: 121 gtccttgtctttaagctcattgctgacttccgggagggtccggacccccgcaaggtcaac 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 120080796 gtccttgtctttaagctcattgctgacttccgggaggatccggacccccgcaaggtcaac 120080737
Query: 181 ctaggagtgggag 193
|||||||||||||
Sbjct: 120080736 ctaggagtgggag 120080724
Score = 339 bits (171), Expect = 2e-90
Identities = 184/187 (98%), Gaps = 1/187 (0%)
Strand = Plus / Minus
Query: 192 agcttatcgcaccgatgattgccagccctgggttttgccggtcgtgaggaaggtggagca 251
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 120072100 agcttatcgcaccgatgattgccagccttgggttttgccagtcgtgaggaaggtggagca 120072041
Query: 252 gaggattgctaatgacagcagcctaaaccacgagtacctgcccatcctgggcctggcaga 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120072040 gaggattgctaatgacagcagcctaaaccacgagtacctgcccatcctgggcctggcaga 120071981
Query: 312 gttccggacctgtgcttcccgccttgcccttggagatgacag-ccagctcttcaggagaa 370
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 120071980 gttccggacctgtgcttcccgccttgcccttggagatgacagcccagctcttcaggagaa 120071921
Query: 371 gcgggtg 377
|||||||
Sbjct: 120071920 gcgggtg 120071914
Score = 256 bits (129), Expect = 2e-65
Identities = 149/158 (94%)
Strand = Plus / Minus
Query: 715 agcgccggtttctgttccccttctttgactcagcctatcagggcttcgcatctggcaacc 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120060200 agcgccggtttctgttccccttctttgactcagcctatcagggcttcgcatctggcaacc 120060141
Query: 775 tnnnnnnngacgcctgggccattcgctattttgtgtctgaaaggttcgagctcttctgtg 834
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 120060140 tagaaaaagacgcctgggccattcgctattttgtgtctgaagggttcgagctcttctgtg 120060081
Query: 835 cccagtccttctccaagaacttcgggctctacaatgag 872
||||||||||||||||||||||||||||||||| ||||
Sbjct: 120060080 cccagtccttctccaagaacttcgggctctacagtgag 120060043
Score = 240 bits (121), Expect = 1e-60
Identities = 124/125 (99%)
Strand = Plus / Minus
Query: 374 ggtgggaggggtgcagtctttggggggaacgggtgcacttcgaattggagctgagttctt 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120063048 ggtgggaggggtgcagtctttggggggaacgggtgcacttcgaattggagctgagttctt 120062989
Query: 434 agcacgatggtacaatggaacaaacaacaaagacacgcctgtctacgtatcctcaccaac 493
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 120062988 agcacgatggtacaatggaacgaacaacaaagacacgcctgtctacgtatcctcaccaac 120062929
Query: 494 ctggg 498
|||||
Sbjct: 120062928 ctggg 120062924
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 498 gaaaatcacaatggagtcttcactactgctggattcaaagacattcggtcctatcgctat 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120062471 gaaaatcacaatggagtcttcactactgctggattcaaagacattcggtcctatcgctat 120062412
Query: 558 tgggataccgagaagagaggacttgatctccagggtttcctgagtgatctggag 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120062411 tgggataccgagaagagaggacttgatctccagggtttcctgagtgatctggag 120062358
Score = 220 bits (111), Expect = 1e-54
Identities = 157/167 (94%), Gaps = 4/167 (2%)
Strand = Plus / Minus
Query: 868 atgagcgcgtggggaacctgaccgtggttgcaaaag-acccgatagcatcctgcgagtcc 926
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 120059964 atgagcgcgtggggaacctgaccgtggttgcaaaagaacccgatagcatcctgcgagtcc 120059905
Query: 927 tttcccaaatggag-agatcgtgcgagtgacgtggt-caatccccctgctcaaggagcga 984
||||||| |||||| ||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 120059904 tttcccagatggagaagatcgtgcgagtgacgtggtccaatccccctgctcagggagcga 120059845
Query: 985 ggatcgt-gcccctaccctctctgaccctgaactctttcatgaatgg 1030
| ||||| |||| ||| |||||||||||||| |||||||||||||||
Sbjct: 120059844 gaatcgtggcccgtacgctctctgaccctgagctctttcatgaatgg 120059798
Score = 196 bits (99), Expect = 2e-47
Identities = 105/107 (98%)
Strand = Plus / Minus
Query: 610 agaacgctcctgagttctccatctttgtcctccacgcctgtgcccacaacccgacaggga 669
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 120062140 agaacgctcctgagttctccatctttgtcctccacgcctgtgcccacaacccaacaggga 120062081
Query: 670 ccgacccaactccagagcagtggaagcagatcgcctctgtcatgaag 716
||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 120062080 ccgacccaactccggagcagtggaagcagatcgcctctgtcatgaag 120062034
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,562,688
Number of extensions: 125
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 7
Length of query: 1065
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1044
Effective length of database: 2,808,413,156
Effective search space: 2931983334864
Effective search space used: 2931983334864
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)